Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 307 of 373
Found at i:103852535 original size:23 final size:23
Alignment explanation
Indices: 103852505--103852587 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 23
103852495 GCTTTATCGA
* * *
103852505 TCAGGCACTTTATGTGTTGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
103852528 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
103852549 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
103852571 T-AGGCACTTTATGTGTC
1 TCAGGCACCTCATGTGTC
103852588 ATATACTGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
21 33 0.65
22 1 0.02
23 17 0.33
ACGTcount: A:0.14, C:0.22, G:0.25, T:0.39
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:103852552 original size:21 final size:21
Alignment explanation
Indices: 103852528--103852577 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
103852518 GTGTTGTATT
103852528 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
103852549 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
*
103852570 TTAGGCAC
1 TCAGGCAC
103852578 TTTATGTGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.30
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:103856146 original size:5 final size:5
Alignment explanation
Indices: 103856136--103856186 Score: 95
Period size: 5 Copynumber: 10.4 Consensus size: 5
103856126 TTATGTTTTA
103856136 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
103856185 AT
1 AT
103856187 AACCTAAAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.09
5 41 0.91
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:103857456 original size:15 final size:15
Alignment explanation
Indices: 103857436--103857492 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
103857426 CGATGAATTT
103857436 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
103857451 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
103857466 ATTGAATTTATATTG
1 ATTGAATTTATATTG
103857481 ATTGAA-TTATAT
1 ATTGAATTTATAT
103857493 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:103857681 original size:18 final size:19
Alignment explanation
Indices: 103857660--103857701 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
103857650 TAATGTGAAT
* *
103857660 AATTGAAATATATTGT-TG
1 AATTGAAAGAAATTGTATG
103857678 AATTGAAAGAAATTGTATG
1 AATTGAAAGAAATTGTATG
103857697 AATTG
1 AATTG
103857702 TGAAAATGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (19 bp):
AATTGAAAGAAATTGTATG
Found at i:103857894 original size:23 final size:23
Alignment explanation
Indices: 103857864--103857950 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
103857854 GCTTTATCGA
* *
103857864 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
103857887 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
103857908 TCAGGCACCTCGTGTGTC--ATT
1 TCAGGCACCTCATGTGTCGTATT
* * *
103857929 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
103857951 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.02
21 32 0.60
23 20 0.38
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:103857911 original size:21 final size:22
Alignment explanation
Indices: 103857876--103857925 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
103857866 AGGCACTTTA
103857876 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
103857899 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
103857920 TGTGTC
1 TGTGTC
103857926 ATTTTAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 18 0.67
23 9 0.33
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.34
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:103859801 original size:28 final size:28
Alignment explanation
Indices: 103859770--103859823 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
103859760 AAACAAAAAA
* *
103859770 AAGAAAGCTACGTGGGAAAATGACATTC
1 AAGAAAGCAACGTGGGAAAACGACATTC
**
103859798 AAGAAAGCAATTTGGGAAAACGACAT
1 AAGAAAGCAACGTGGGAAAACGACAT
103859824 CCAAATGCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.24, T:0.17
Consensus pattern (28 bp):
AAGAAAGCAACGTGGGAAAACGACATTC
Found at i:103861461 original size:26 final size:24
Alignment explanation
Indices: 103861422--103861477 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 24
103861412 AGACAAAGGA
103861422 TTTTTTTTTCACAAAAAAGCATATAC
1 TTTTTTTTTCACAAAAAAGC--ATAC
*
103861448 TTTTTTTTTTACAAAAAAGCATAC
1 TTTTTTTTTCACAAAAAAGCATAC
103861472 TTTTTT
1 TTTTTT
103861478 GTTGATACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 10 0.34
26 19 0.66
ACGTcount: A:0.34, C:0.12, G:0.04, T:0.50
Consensus pattern (24 bp):
TTTTTTTTTCACAAAAAAGCATAC
Found at i:103861982 original size:29 final size:30
Alignment explanation
Indices: 103861949--103862019 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
103861939 AAAAAATTTT
*
103861949 AACTTTTAAGGG-CCCAAATTTTTTT-TACC
1 AACTTTTAAGGGACCAAAATTTTTTTCT-CC
*
103861978 AACTTTTAAGGGATCTAAAATTTTTTTCTCC
1 AACTTTTAAGGGA-CCAAAATTTTTTTCTCC
103862009 AACTTTTAAGG
1 AACTTTTAAGG
103862020 AATCTAAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 12 0.32
31 24 0.65
32 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (30 bp):
AACTTTTAAGGGACCAAAATTTTTTTCTCC
Found at i:103862002 original size:31 final size:31
Alignment explanation
Indices: 103861964--103862028 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
103861954 TTAAGGGCCC
*
103861964 AAATTTTTTT-TACCAACTTTTAAGGGATCTA
1 AAATTTTTTTCT-CCAACTTTTAAGGAATCTA
103861995 AAATTTTTTTCTCCAACTTTTAAGGAATCTA
1 AAATTTTTTTCTCCAACTTTTAAGGAATCTA
103862026 AAA
1 AAA
103862029 CCCCATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (31 bp):
AAATTTTTTTCTCCAACTTTTAAGGAATCTA
Found at i:103864006 original size:19 final size:20
Alignment explanation
Indices: 103863978--103864030 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
103863968 TTTGCTTAAT
103863978 TAAT-TTTTAATAATTATTA
1 TAATATTTTAATAATTATTA
* *
103863997 TAA-ATTTTAATATTTTTTA
1 TAATATTTTAATAATTATTA
103864016 TAATATTTT-ATAATT
1 TAATATTTTAATAATT
103864031 CTAAAATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 24 0.83
20 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATATTTTAATAATTATTA
Found at i:103879690 original size:42 final size:43
Alignment explanation
Indices: 103879629--103879737 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 43
103879619 GACTTGATAT
*
103879629 TTACATGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTGA
* * * * *
103879671 TTTCGTGTAAGACCTTGTCTAGGACAGTAGCGTCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
*
103879714 TTACATGTAAGACCAAGTCTGGGA
1 TTACATGTAAGACCATGTCTGGGA
103879738 TGTTGGCATT
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
Found at i:103880900 original size:27 final size:27
Alignment explanation
Indices: 103880867--103880921 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
103880857 ACTATATATG
*
103880867 TATGAATTGTTATGATATCATGATGTA
1 TATGAATTGCTATGATATCATGATGTA
103880894 TATGAATTGCTATGATATCATGATGTA
1 TATGAATTGCTATGATATCATGATGTA
103880921 T
1 T
103880922 GATTAAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (27 bp):
TATGAATTGCTATGATATCATGATGTA
Found at i:103893100 original size:33 final size:33
Alignment explanation
Indices: 103893062--103893129 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
103893052 ACACAGAGTA
103893062 AACATTTAAGCTTAGTAAGTTCGTATAATACAG
1 AACATTTAAGCTTAGTAAGTTCGTATAATACAG
103893095 AACATTTAAGCTTAGTAAGTTCGTATAATACAG
1 AACATTTAAGCTTAGTAAGTTCGTATAATACAG
103893128 AA
1 AA
103893130 TTTAACTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (33 bp):
AACATTTAAGCTTAGTAAGTTCGTATAATACAG
Found at i:103893514 original size:25 final size:25
Alignment explanation
Indices: 103893486--103893573 Score: 149
Period size: 25 Copynumber: 3.5 Consensus size: 25
103893476 GTTGAATAAC
* * *
103893486 GGGAAGTTCATTCGAGCTGAATAAT
1 GGGAAGCTCATGCGAGCTGAAAAAT
103893511 GGGAAGCTCATGCGAGCTGAAAAAT
1 GGGAAGCTCATGCGAGCTGAAAAAT
103893536 GGGAAGCTCATGCGAGCTGAAAAAT
1 GGGAAGCTCATGCGAGCTGAAAAAT
103893561 GGGAAGCTCATGC
1 GGGAAGCTCATGC
103893574 AGTACCCCAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.33, C:0.16, G:0.32, T:0.19
Consensus pattern (25 bp):
GGGAAGCTCATGCGAGCTGAAAAAT
Found at i:103894181 original size:21 final size:21
Alignment explanation
Indices: 103894156--103894198 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
103894146 TCTATCATAA
103894156 TACTTCAAAATTCAAGTATAC
1 TACTTCAAAATTCAAGTATAC
103894177 TACTTCAAAATTCAAGTATAC
1 TACTTCAAAATTCAAGTATAC
103894198 T
1 T
103894199 CATAAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.35
Consensus pattern (21 bp):
TACTTCAAAATTCAAGTATAC
Found at i:103894205 original size:18 final size:20
Alignment explanation
Indices: 103894162--103894204 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
103894152 ATAATACTTC
*
103894162 AAAATTCAAGTATACTACTT
1 AAAATTCAAGTATACTACAT
103894182 CAAAATTCAAGTATACT-CAT
1 -AAAATTCAAGTATACTACAT
103894202 AAA
1 AAA
103894205 TGGAAAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 2 0.10
21 16 0.76
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATTCAAGTATACTACAT
Found at i:103897163 original size:4 final size:4
Alignment explanation
Indices: 103897154--103897182 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
103897144 CCCTTTTCTA
103897154 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
103897183 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:103898329 original size:36 final size:36
Alignment explanation
Indices: 103898289--103898362 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 36
103898279 GGGAATGAGC
103898289 TATATACAT-AATAGATTTAAAA-AATATATATATGTA
1 TATATACATGAATAGATTTAAAAGAA-AT-TATATGTA
*
103898325 TATATATATGAATAGATTTAAAAGAAATTATATGTA
1 TATATACATGAATAGATTTAAAAGAAATTATATGTA
103898361 TA
1 TA
103898363 AAATAACATG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
36 18 0.51
37 15 0.43
38 2 0.06
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.39
Consensus pattern (36 bp):
TATATACATGAATAGATTTAAAAGAAATTATATGTA
Found at i:103928708 original size:16 final size:15
Alignment explanation
Indices: 103928680--103928709 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
103928670 GCCACATTTA
103928680 TTTCTTTTTTCCTTC
1 TTTCTTTTTTCCTTC
103928695 TTTCTTTCTTTCCTT
1 TTTCTTT-TTTCCTT
103928710 TTTTTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTCTTTTTTCCTTC
Found at i:103930714 original size:18 final size:18
Alignment explanation
Indices: 103930691--103930726 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
103930681 TCACTATATT
103930691 TTTTTATATTAGAATTTA
1 TTTTTATATTAGAATTTA
* *
103930709 TTTTTATTTTAGAGTTTA
1 TTTTTATATTAGAATTTA
103930727 AATTTTTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (18 bp):
TTTTTATATTAGAATTTA
Found at i:103934275 original size:26 final size:27
Alignment explanation
Indices: 103934209--103934284 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 27
103934199 GTAACTGGTA
* * *
103934209 TAGTTCGCGGGGATAATAAACACTGGG
1 TAGTCCGCTGGGATAATAAACACGGGG
* *
103934236 TAGTCTG-TCAGGATAATAAAC-CGGGG
1 TAGTCCGCT-GGGATAATAAACACGGGG
*
103934262 TAGTCCGCTGGGATAGTAAACAC
1 TAGTCCGCTGGGATAATAAACAC
103934285 AGAGTAGTTC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (27 bp):
TAGTCCGCTGGGATAATAAACACGGGG
Found at i:103937374 original size:17 final size:16
Alignment explanation
Indices: 103937346--103937398 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
103937336 TTTGGTTCAC
103937346 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
103937362 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
103937379 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
103937395 TGTA
1 TGTA
103937399 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:103937463 original size:44 final size:45
Alignment explanation
Indices: 103937379--103937469 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
103937369 GGATTAGAGG
* * *
103937379 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
103937424 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
103937468 TG
1 TG
103937470 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:103937661 original size:18 final size:17
Alignment explanation
Indices: 103937640--103937674 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
103937630 TTATTATTAA
*
103937640 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
103937658 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
103937675 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:103937698 original size:37 final size:37
Alignment explanation
Indices: 103937657--103937824 Score: 99
Period size: 38 Copynumber: 4.3 Consensus size: 37
103937647 TTAATTAAAA
103937657 TATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 TATATAATTTAATAAAATTCTTAATAATTAATATTCT
* * * * **
103937694 TATATTAATTTACTGAAA-TCATAAT-ATATGATACTGTAA
1 TATA-TAATTTAATAAAATTCTTAATAAT-TAATA-T-TCT
* * * * **
103937733 AATATAATTAACATAATTATTATTAAATATATTTTAATTAAAC-
1 TATATAATTTA-ATAA-AATTCTT-AATA-A--TTAA-TATTCT
103937776 TATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 TATATAATTTAATAAAATTCTTAATAATTAATATTCT
103937813 TATATTAATTTA
1 TATA-TAATTTA
103937825 CTGAAATCAT
Statistics
Matches: 93, Mismatches: 23, Indels: 29
0.64 0.16 0.20
Matches are distributed among these distances:
36 5 0.05
37 22 0.24
38 25 0.27
39 7 0.08
40 5 0.05
41 7 0.08
42 7 0.08
43 9 0.10
44 1 0.01
45 2 0.02
46 3 0.03
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (37 bp):
TATATAATTTAATAAAATTCTTAATAATTAATATTCT
Found at i:103937942 original size:120 final size:120
Alignment explanation
Indices: 103937623--103938844 Score: 2320
Period size: 120 Copynumber: 10.2 Consensus size: 120
103937613 CTCATATTTA
103937623 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
103937688 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATAT-AATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103937742 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
103937807 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103937862 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103937927 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103937982 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
103938047 TATTCTTATATTAATTTACTCAAATCATAATATAGGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938102 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103938167 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938222 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103938287 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938342 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103938407 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938462 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103938527 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938582 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103938647 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938702 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
103938767 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
103938822 AACATATTTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
103938845 AACTTGAAAA
Statistics
Matches: 1085, Mismatches: 17, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
119 114 0.11
120 971 0.89
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:103940642 original size:66 final size:64
Alignment explanation
Indices: 103940556--103940763 Score: 179
Period size: 66 Copynumber: 3.3 Consensus size: 64
103940546 AAATATATTT
*
103940556 AATATTAATTATTTCA-AATTTTCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTT-TTTTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
103940620 AG
63 AG
* * * * **
103940622 AATATTAATTATTAAGAA-TTTTATTAA--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTAAGAATTTTTTTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* * * *
103940676 AATAATAATTATGTTA-CATTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTAT-TAAGAATT-TTTTTTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
103940740 AG
63 AG
103940742 AATATTAATTATTAAGAATTTT
1 AATATTAATTATTAAGAATTTT
103940764 ATTAAATTAT
Statistics
Matches: 106, Mismatches: 21, Indels: 31
0.67 0.13 0.20
Matches are distributed among these distances:
54 12 0.11
55 7 0.07
56 6 0.06
57 3 0.03
58 1 0.01
59 10 0.09
60 8 0.08
61 10 0.09
62 1 0.01
63 3 0.03
64 5 0.05
65 13 0.12
66 27 0.25
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTAAGAATTTTTTTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:103940656 original size:120 final size:120
Alignment explanation
Indices: 103940518--103940815 Score: 508
Period size: 120 Copynumber: 2.5 Consensus size: 120
103940508 AATTATTTTA
* * * * *
103940518 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTTTCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
*
103940582 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
103940638 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
103940703 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
103940758 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
103940816 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 161 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:103940673 original size:16 final size:16
Alignment explanation
Indices: 103940652--103940698 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
103940642 TTATTAAATT
103940652 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
103940668 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
103940683 AT-TATGTTACATTATA
1 ATATATTTTA-ATTATA
103940699 TTTTACAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 14 0.54
16 10 0.38
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:103940793 original size:16 final size:16
Alignment explanation
Indices: 103940772--103940813 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
103940762 TTATTAAATT
*
103940772 ATATATTTTAATTATA
1 ATATATTTTAATAATA
103940788 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
103940803 AT-TATGTTTAA
1 ATATAT-TTTAA
103940814 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:103940798 original size:15 final size:15
Alignment explanation
Indices: 103940763--103940804 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
103940753 TTAAGAATTT
*
103940763 TATTAAATTAT-ATA
1 TATTTAATTATAATA
103940777 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
103940791 TATTTAATAATAAT
1 TATTTAATTATAAT
103940805 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:103940954 original size:157 final size:157
Alignment explanation
Indices: 103940747--103941063 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
103940737 ATAAGAATAT
*
103940747 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
103940812 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
103940877 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
103940904 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
103940968 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
* *
103941033 ATAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
103941061 TAA
1 TAA
103941064 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 25 0.16
157 127 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:103941180 original size:44 final size:45
Alignment explanation
Indices: 103941115--103941205 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
103941105 ACCTCTATTC
* * *
103941115 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
103941159 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
103941204 CA
1 CA
103941206 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:103941207 original size:16 final size:16
Alignment explanation
Indices: 103941186--103941254 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
103941176 GATTAGCTAT
103941186 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
103941202 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
103941219 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
103941235 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
103941251 TACA
1 TACA
103941255 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:103941228 original size:33 final size:32
Alignment explanation
Indices: 103941186--103941254 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
103941176 GATTAGCTAT
103941186 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
103941219 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
103941251 TACA
1 TACA
103941255 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:103943581 original size:27 final size:27
Alignment explanation
Indices: 103943541--103943602 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
103943531 AGTAGCCCTA
* *
103943541 AAAAAAATTCACGAACTCTATTTCGTT
1 AAAAAAATTCACGAACCCTATTTCATT
*
103943568 AAAAAAATTGACGAACCCTATTTCATT
1 AAAAAAATTCACGAACCCTATTTCATT
*
103943595 CAAAAAAT
1 AAAAAAAT
103943603 AATTTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (27 bp):
AAAAAAATTCACGAACCCTATTTCATT
Found at i:103945347 original size:46 final size:46
Alignment explanation
Indices: 103945280--103945447 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
103945270 GCCCATAAGC
103945280 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
* * * * * **
103945326 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATC-TCT
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCATCCA-CAAGT
* * * *
103945372 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
*
103945419 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
103945448 TGCCCAAACA
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
46 64 0.65
47 34 0.35
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGT
Found at i:103945390 original size:93 final size:93
Alignment explanation
Indices: 103945279--103945451 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
103945269 CGCCCATAAG
* *
103945279 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
103945344 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
103945372 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
103945437 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
103945452 CAAACATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:103949087 original size:23 final size:23
Alignment explanation
Indices: 103949061--103949107 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
103949051 AAGAATGATT
103949061 TATGGGTTAATATTAAGGATAAA
1 TATGGGTTAATATTAAGGATAAA
103949084 TATGGGTTAATATTAAGGATAAA
1 TATGGGTTAATATTAAGGATAAA
103949107 T
1 T
103949108 TAAGAAACGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (23 bp):
TATGGGTTAATATTAAGGATAAA
Found at i:103949930 original size:6 final size:6
Alignment explanation
Indices: 103949921--103949958 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
103949911 AAATAAACAT
103949921 AAAAAG AAAAA- ATAAAAG -AAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAAG AAA
103949959 TCTAAAGACA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 6 0.21
6 23 0.79
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:103949932 original size:19 final size:17
Alignment explanation
Indices: 103949904--103949948 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
103949894 TTTAAAATAG
*
103949904 AAAGAGAAAATAAACATAA
1 AAAGAAAAAATAAA-A-AA
*
103949923 AAAGAAAAAATAAAAGA
1 AAAGAAAAAATAAAAAA
103949940 AAAGAAAAA
1 AAAGAAAAA
103949949 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.42
18 1 0.04
19 13 0.54
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAATAAAAAA
Found at i:103949942 original size:17 final size:17
Alignment explanation
Indices: 103949922--103949958 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
103949912 AATAAACATA
103949922 AAAAGAAAAA-ATAAAAG
1 AAAAGAAAAAGA-AAAAG
103949939 AAAAGAAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
103949956 AAA
1 AAA
103949959 TCTAAAGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAG
Found at i:103952307 original size:43 final size:43
Alignment explanation
Indices: 103952244--103952330 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
103952234 ATGGCCTAAG
* *
103952244 ACACGCCCATGTGTCCAAGCCATGTGGTCCACACGGCCGTGTC
1 ACACGCCCATGTGTCCAAGCCATATGGTCCACACGACCGTGTC
* *
103952287 ACACGCCCTTGTGTCTAAGCCATATGGTCCACACGACCGTGTC
1 ACACGCCCATGTGTCCAAGCCATATGGTCCACACGACCGTGTC
103952330 A
1 A
103952331 TGTACCCGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.21, C:0.36, G:0.23, T:0.21
Consensus pattern (43 bp):
ACACGCCCATGTGTCCAAGCCATATGGTCCACACGACCGTGTC
Found at i:103955187 original size:15 final size:12
Alignment explanation
Indices: 103955151--103955178 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
103955141 AGCAGGTTTC
103955151 ACAATATTCGCG
1 ACAATATTCGCG
103955163 ACAATATTCGCG
1 ACAATATTCGCG
103955175 ACAA
1 ACAA
103955179 CCATATTCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.21
Consensus pattern (12 bp):
ACAATATTCGCG
Found at i:103957474 original size:33 final size:33
Alignment explanation
Indices: 103957395--103957476 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
103957385 AGAAAGTTCA
*
103957395 TTGGGATAGTAAACACAGAATAGATAAAGTCTG
1 TTGGGATAGTAAACACAGAATAGAGAAAGTCTG
* * * * *
103957428 TTGAGACAATAAACATAGAATAGAGAAGGTCT-
1 TTGGGATAGTAAACACAGAATAGAGAAAGTCTG
103957460 TTCGGGATAGTAAACAC
1 TT-GGGATAGTAAACAC
103957477 GAGTAAGTCT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
32 2 0.05
33 36 0.95
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (33 bp):
TTGGGATAGTAAACACAGAATAGAGAAAGTCTG
Found at i:103957486 original size:27 final size:27
Alignment explanation
Indices: 103957462--103957539 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
103957452 GAAGGTCTTT
*
103957462 CGGGATAGTAAACACGAGTAAGTCTGC
1 CGGGACAGTAAACACGAGTAAGTCTGC
* * * * *
103957489 CTGAACAGTAAATATGGGTAAGTCTGC
1 CGGGACAGTAAACACGAGTAAGTCTGC
*
103957516 CTGGACAGTAAACACGAGTAAGTC
1 CGGGACAGTAAACACGAGTAAGTC
103957540 CGTCGGGATA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (27 bp):
CGGGACAGTAAACACGAGTAAGTCTGC
Found at i:103962202 original size:28 final size:28
Alignment explanation
Indices: 103962138--103962214 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 28
103962128 TGATTGAATC
*
103962138 GGTTGATG-AATTTTTTGAAGCAAAGAG
1 GGTTTATGAAATTTTTTGAAGCAAAGAG
* *
103962165 AG-TTATTGAAATTTTTTGAA-CGAAATAG
1 GGTTTA-TGAAATTTTTTGAAGC-AAAGAG
* *
103962193 GGTTTATGAAAATTTTTAAAGC
1 GGTTTATGAAATTTTTTGAAGC
103962215 TATATTCAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 29 0.74
29 4 0.10
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (28 bp):
GGTTTATGAAATTTTTTGAAGCAAAGAG
Found at i:103972508 original size:35 final size:35
Alignment explanation
Indices: 103972344--103972506 Score: 211
Period size: 35 Copynumber: 4.6 Consensus size: 35
103972334 CATGACAAAG
* * *
103972344 TGTGAAATGTAAGGTATAGTATTAACCATACTGAGT
1 TGTGAAACGT-AGGTATGGTATTATCCATACTGAGT
*
103972380 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
103972415 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
** ** *
103972450 TAAGAAACGTAGGTATGACATT-TCCGATACCGAGT
1 TGTGAAACGTAGGTATGGTATTATCC-ATACTGAGT
*
103972485 TGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTATGGTATT
103972507 TCAATGAGGA
Statistics
Matches: 113, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
34 3 0.03
35 101 0.89
36 9 0.08
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
Found at i:103974799 original size:7 final size:7
Alignment explanation
Indices: 103974787--103974817 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
103974777 TTCTGTTTCA
103974787 TTTGTTC
1 TTTGTTC
103974794 TTTGTTC
1 TTTGTTC
103974801 TTTGTTC
1 TTTGTTC
103974808 TTTGTTC
1 TTTGTTC
103974815 TTT
1 TTT
103974818 ATCTTTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.13, G:0.13, T:0.74
Consensus pattern (7 bp):
TTTGTTC
Found at i:103974801 original size:21 final size:21
Alignment explanation
Indices: 103974777--103974817 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
103974767 TCTTTTTCCC
103974777 TTCTGT-TTCATTTGTTCTTTG
1 TTCTGTGTTC-TTTGTTCTTTG
*
103974798 TTCTTTGTTCTTTGTTCTTT
1 TTCTGTGTTCTTTGTTCTTT
103974818 ATCTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.02, C:0.15, G:0.12, T:0.71
Consensus pattern (21 bp):
TTCTGTGTTCTTTGTTCTTTG
Found at i:103974852 original size:5 final size:5
Alignment explanation
Indices: 103974842--103974894 Score: 90
Period size: 5 Copynumber: 10.8 Consensus size: 5
103974832 TATTTTTTAT
*
103974842 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TTTAA TATAA TAT-A
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
103974891 TATA
1 TATA
103974895 CTTAATTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
4 4 0.09
5 41 0.91
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:103984412 original size:84 final size:84
Alignment explanation
Indices: 103984303--103984468 Score: 260
Period size: 84 Copynumber: 2.0 Consensus size: 84
103984293 CCAGTACCAC
* **
103984303 TAGTTCCACCACTTAAATTCTGTCCACAATCTTGCAACTCATCATTGTCCTTCACACCACCTTCT
1 TAGTTCCACCACTTAAATTCTGTCCACAATCTTGCAACTCACCATCATCCTTCACACCACCTTCT
103984368 CTTCTATTCACCACCTCAT
66 CTTCTATTCACCACCTCAT
* * *
103984387 TAGTTCCACCATTTAGATTCTGTCCACAATCTTGCAACTCACCATCATCCTTCACATCACCTTCT
1 TAGTTCCACCACTTAAATTCTGTCCACAATCTTGCAACTCACCATCATCCTTCACACCACCTTCT
* *
103984452 CTTTTATTCACCCCCTC
66 CTTCTATTCACCACCTC
103984469 TTCATTAACC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.23, C:0.37, G:0.05, T:0.35
Consensus pattern (84 bp):
TAGTTCCACCACTTAAATTCTGTCCACAATCTTGCAACTCACCATCATCCTTCACACCACCTTCT
CTTCTATTCACCACCTCAT
Found at i:103985078 original size:225 final size:216
Alignment explanation
Indices: 103984692--103985115 Score: 661
Period size: 225 Copynumber: 1.9 Consensus size: 216
103984682 CTCTCCACCA
* * *
103984692 CCACCACCAACACTCTTAGACTGTTCGCTGCCTGAATCCCGTGACCATGTTGGTGACCTTGACTT
1 CCACCACCAACACTCTTAGACTGCTCACTGCCTGAATCCCGTGACCATGTTGGCGACCTTGACTT
* *
103984757 AGACTTCGACTTGGAGCTTCTCCTCTTCAAATCCTCCTCCCTTGATTCCCCAACAACCCTGCCTG
66 AGACTTCGACTTGGAGCTTCTCCTCCTCAAATCCTCCTCCCTTGATTCCCCAACAACCCTCCCTG
*
103984822 CCCCCAAAGAATCCCTTGACCGTGTAGGTGAGCTCACATCCCTAACATCCTTCAGTTGCACCTTA
131 CCCCCAAAGAATCCCTTGACCGTGTAGGTGAGCTCACATCCCTAACATCCCTCAGTTGCACCTTA
103984887 CTACCTCTAGTCTCATCAATT
196 CTACCTCTAGTCTCATCAATT
103984908 CCACCACCAACACTCTTAGACTGCTCACTGCCTGAATCCCGTGACCATGTTGGCGACCTTGACAT
1 CCACCACCAACACTCTTAGACTGCTCACTGCCTGAATCCCGTGACCATGTTGGCGACCTTGAC--
* * *
103984973 TGACGTAGACATT-GCCTTGGTGCTTCTCCTCCTCAAATCTTCCCTTTCCCTTGATTCCCCAACA
64 T----TAGAC-TTCGACTTGGAGCTTCTCCTCCTCAAATCCT-CC--TCCCTTGATTCCCCAACA
*
103985037 ACCCTCCCTGCCCCCAAAGAATCCCTTGACCTTGTAGGTGAGCTCACATCCCTAACATCCCTCAG
121 ACCCTCCCTGCCCCCAAAGAATCCCTTGACCGTGTAGGTGAGCTCACATCCCTAACATCCCTCAG
103985102 TTGCACCTTACTAC
186 TTGCACCTTACTAC
103985116 TCCCTCTAAC
Statistics
Matches: 188, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
216 60 0.32
218 1 0.01
222 29 0.15
223 4 0.02
225 94 0.50
ACGTcount: A:0.21, C:0.37, G:0.14, T:0.28
Consensus pattern (216 bp):
CCACCACCAACACTCTTAGACTGCTCACTGCCTGAATCCCGTGACCATGTTGGCGACCTTGACTT
AGACTTCGACTTGGAGCTTCTCCTCCTCAAATCCTCCTCCCTTGATTCCCCAACAACCCTCCCTG
CCCCCAAAGAATCCCTTGACCGTGTAGGTGAGCTCACATCCCTAACATCCCTCAGTTGCACCTTA
CTACCTCTAGTCTCATCAATT
Found at i:103990558 original size:40 final size:39
Alignment explanation
Indices: 103990507--103990648 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 39
103990497 GATTCGGATA
*
103990507 TATATATGGCACTTAGTATGCGATTCGAGATAACTTCGGC
1 TATATATGGCACTTAGTGTGCGA-TCGAGATAACTTCGGC
* * * *
103990547 TATATATGGCACTTGGTGTGCGAATCGAAATAGCTCCGGC
1 TATATATGGCACTTAGTGTGCG-ATCGAGATAACTTCGGC
* *
103990587 TATATGTGGCACTTAGTGTGCAAGACCGAGATAACTTCGGC
1 TATATATGGCACTTAGTGTGC--GATCGAGATAACTTCGGC
*
103990628 TATGA-AAGGCACTTAGTGTGC
1 TAT-ATATGGCACTTAGTGTGC
103990649 AAGATTAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
40 52 0.61
41 31 0.36
42 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (39 bp):
TATATATGGCACTTAGTGTGCGATCGAGATAACTTCGGC
Found at i:103990672 original size:41 final size:42
Alignment explanation
Indices: 103990594--103990700 Score: 99
Period size: 41 Copynumber: 2.5 Consensus size: 42
103990584 GGCTATATGT
*** * *
103990594 GGCACTTAGTGTGCAAGACCGAGATAACTTCGGCTATG-AAA
1 GGCACTTAGTGTGCAAGATTAAAATAACTTCGACTATGTAAA
* * ***
103990635 GGCACTTAGTGTGCAAGATTAAAATAGCTTCTACTATGTTTT
1 GGCACTTAGTGTGCAAGATTAAAATAACTTCGACTATGTAAA
*
103990677 GGCACTTAGTGTGCGAGAATTAAA
1 GGCACTTAGTGTGCAAG-ATTAAA
103990701 GTATTCAACA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 31 0.58
42 16 0.30
43 6 0.11
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
GGCACTTAGTGTGCAAGATTAAAATAACTTCGACTATGTAAA
Found at i:103995992 original size:46 final size:45
Alignment explanation
Indices: 103995828--103995990 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 45
103995818 CGCCCAGAAA
* *
103995828 TGAAATCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCATCCATAAG
* * * * ***
103995874 TAAACTCGGACTCAACTCAACAAGCTCGG-ATGC-CTAGTTACATCTC
1 TGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--TCCATAAG
* *
103995920 TCGAACTCGGACTCAAATCAACGAGTTCGGACATTCGCATCCATAAG
1 T-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAG
103995967 TGAACTCGGACTCAACTCAACGAG
1 TGAACTCGGACTCAACTCAACGAG
103995991 TTTGGATGCC
Statistics
Matches: 91, Mismatches: 19, Indels: 14
0.73 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 51 0.56
47 29 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAG
Found at i:103997685 original size:20 final size:19
Alignment explanation
Indices: 103997657--103997698 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
103997647 TGTCCCCTGT
103997657 TTTGAGAAAAATTT-TCTAAG
1 TTTGAG-AAAATTTCT-TAAG
*
103997677 TTTGTGAAAATTTCTTAAG
1 TTTGAGAAAATTTCTTAAG
103997696 TTT
1 TTT
103997699 TCGGTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (19 bp):
TTTGAGAAAATTTCTTAAG
Found at i:104002265 original size:18 final size:19
Alignment explanation
Indices: 104002242--104002281 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
104002232 TATTTCATAC
104002242 TATGC-ACAAACAAGTAAA
1 TATGCAACAAACAAGTAAA
*
104002260 TATGCAACAAACAAGTCAA
1 TATGCAACAAACAAGTAAA
104002279 TAT
1 TAT
104002282 CCAGCAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.53, C:0.17, G:0.10, T:0.20
Consensus pattern (19 bp):
TATGCAACAAACAAGTAAA
Found at i:104004140 original size:17 final size:17
Alignment explanation
Indices: 104004118--104004154 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
104004108 CATATTTATA
*
104004118 TTTTGTCCAAATCTATT
1 TTTTGTCCAAATCAATT
104004135 TTTTGTCCAAATCAATT
1 TTTTGTCCAAATCAATT
104004152 TTT
1 TTT
104004155 CCAGCTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.54
Consensus pattern (17 bp):
TTTTGTCCAAATCAATT
Found at i:104005849 original size:19 final size:21
Alignment explanation
Indices: 104005821--104005862 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
104005811 TGATTGCGTG
*
104005821 TACATGTGTA-AAAATAA-AA
1 TACATATGTATAAAATAATAA
104005840 TACATATGTATAAAATAATAA
1 TACATATGTATAAAATAATAA
104005861 TA
1 TA
104005863 TATGAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 7 0.35
21 4 0.20
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (21 bp):
TACATATGTATAAAATAATAA
Found at i:104005905 original size:5 final size:5
Alignment explanation
Indices: 104005883--104005927 Score: 72
Period size: 5 Copynumber: 9.0 Consensus size: 5
104005873 TTAATATTTA
* *
104005883 ATTAT ATAAT AATAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
104005928 TATAATAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:104006030 original size:13 final size:13
Alignment explanation
Indices: 104005988--104006051 Score: 53
Period size: 13 Copynumber: 4.9 Consensus size: 13
104005978 AACAAAGTTA
*
104005988 AAAACGAAACAGAG
1 AAAA-GAAAAAGAG
104006002 AAGAA-AAAAA-ATG
1 AA-AAGAAAAAGA-G
104006015 AAAAGAAAAAGAG
1 AAAAGAAAAAGAG
*
104006028 -AAAGAAAAGGAG
1 AAAAGAAAAAGAG
*
104006040 AAAAGATAAAGA
1 AAAAGAAAAAGA
104006052 TTTCAAAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
12 14 0.34
13 22 0.54
14 3 0.07
15 2 0.05
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:104006340 original size:18 final size:19
Alignment explanation
Indices: 104006311--104006346 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
104006301 GTGAAAAATT
*
104006311 TGAAATTTAGGGATTTAAG
1 TGAAATTTAGGGAGTTAAG
104006330 TGAAA-TTAGGGAGTTAA
1 TGAAATTTAGGGAGTTAA
104006347 ATATAGCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (19 bp):
TGAAATTTAGGGAGTTAAG
Found at i:104008707 original size:23 final size:23
Alignment explanation
Indices: 104008673--104008724 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 23
104008663 TATCTTACCG
* *
104008673 TTTCATTATATACATATATCATCCA
1 TTTCAATATAT-CATATACCAT-CA
*
104008698 TTTCAATATATCATGTACCATCA
1 TTTCAATATATCATATACCATCA
104008721 TTTC
1 TTTC
104008725 CATGTATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 6 0.25
24 8 0.33
25 10 0.42
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.44
Consensus pattern (23 bp):
TTTCAATATATCATATACCATCA
Found at i:104015184 original size:25 final size:25
Alignment explanation
Indices: 104015150--104015221 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
104015140 GGAGAGCCAT
104015150 TAATCAGGAAGCTCACTAAGAACCTA
1 TAATCAGGAAGCTCACTAAGAACC-A
*
104015176 TAATC-GGAAAGCTCACTAAGAGCCA
1 TAATCAGG-AAGCTCACTAAGAACCA
* *
104015201 TATATCGGGACGCTCA-TAAGA
1 TA-ATCAGGAAGCTCACTAAGA
104015222 GTTGTGGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
25 10 0.24
26 29 0.71
27 2 0.05
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.19
Consensus pattern (25 bp):
TAATCAGGAAGCTCACTAAGAACCA
Found at i:104021645 original size:131 final size:131
Alignment explanation
Indices: 104021350--104021697 Score: 401
Period size: 131 Copynumber: 2.7 Consensus size: 131
104021340 GAAGACGAGG
* * ** *
104021350 TTTGATGTTTGGCAATTCGTGGAATCATTCCCTAATGTGTTGGGTTGCAATTTCGTGTTTGCTCA
1 TTTGATGTTTGGCAATTCGTGGAATCATTCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTCA
** * * * *
104021415 AAATAATTGAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGAT
66 AAATAATCAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCCTTAAACGAAGGCAAT
104021480 A
131 A
*** * * * *
104021481 TGCAATATTTGGCAATTCGTGGAATCGTTCCCTAACGTGCTGGGTTGCAATTTCCCATTTGTTTA
1 TTTGATGTTTGGCAATTCGTGGAATCATTCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTCA
* *
104021546 AAATAATCAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCTTTAAAACGAAGGTAA
66 AAATAATCAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCCTT-AAACGAAGGCAA
104021611 TA
130 TA
* * * * * * ** *
104021613 TTTGGTGTTTGACAATTCG-AGAACCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCA
1 TTTGATGTTTGGCAATTCGTGGAATCATTCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTCA
* *
104021677 AAACAATCAAATATTCCTTCA
66 AAATAATCAAATATCCCTTCA
104021698 GGTTTTCATT
Statistics
Matches: 178, Mismatches: 38, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
131 153 0.86
132 25 0.14
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (131 bp):
TTTGATGTTTGGCAATTCGTGGAATCATTCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTCA
AAATAATCAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCCTTAAACGAAGGCAAT
A
Found at i:104021705 original size:131 final size:131
Alignment explanation
Indices: 104021424--104021815 Score: 319
Period size: 131 Copynumber: 3.0 Consensus size: 131
104021414 AAAATAATTG
* * * * * * *
104021424 AATATCACTTCAAAATTTCACTCATGTCTT-TTAAAAATCCCTT--AAACGAAGGCGATATGCAA
1 AATATCCCTTCAAAATTTCACTCAGGT-TTACTAAAAA-CCATTCAAAACGAAGGCAATATTCGA
* * * *** * * * * *
104021486 TATTTGGCAATTCGTGGAATCGTTCCCTAACGTGCTGGGTTGCAATTTCCCATTTGTTTAAAATA
64 TGTTTGACAATTCG-AGAATCCAGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACA
104021551 ATCA
128 ATCA
* * * *
104021555 AATATCCCTTCAAAATTTCACTCAGGTCTT-CTAAAAATCC-TTTAAAACGAAGGTAATATTTGG
1 AATATCCCTTCAAAATTTCACTCAGGT-TTACTAAAAA-CCATTCAAAACGAAGGCAATATTCGA
* *
104021618 TGTTTGACAATTCGAGAA-CCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACA
64 TGTTTGACAATTCGAGAATCCA-GCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACA
104021682 ATCA
128 ATCA
* *** * * * * *
104021686 AATATTCCTTCAGGTTTTCATTCATGTTTATTAAAAACCATTCAAAACGAAGGCGATGTTCGATG
1 AATATCCCTTCAAAATTTCACTCAGGTTTACTAAAAACCATTCAAAACGAAGGCAATATTCGATG
* * * ** * * *
104021751 TTTGGCGATTTGAGAATTGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGCTCAAAACAATC
66 TTTGACAATTCGAGAATCCAGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATC
104021816 GAAGAACCCC
Statistics
Matches: 210, Mismatches: 45, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
130 7 0.03
131 177 0.84
132 26 0.12
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (131 bp):
AATATCCCTTCAAAATTTCACTCAGGTTTACTAAAAACCATTCAAAACGAAGGCAATATTCGATG
TTTGACAATTCGAGAATCCAGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATC
A
Found at i:104022981 original size:15 final size:15
Alignment explanation
Indices: 104022961--104022995 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
104022951 TAAAACTAAA
*
104022961 GGGTATGAGGTTAAT
1 GGGTATGAAGTTAAT
104022976 GGGTATGAAGTTAAT
1 GGGTATGAAGTTAAT
104022991 GGGTA
1 GGGTA
104022996 GAATTAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.40, T:0.31
Consensus pattern (15 bp):
GGGTATGAAGTTAAT
Found at i:104025262 original size:26 final size:26
Alignment explanation
Indices: 104025226--104025278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
104025216 CGTAGGGGTA
104025226 ATAAAAGAAAAGAACTAAATGCAATT
1 ATAAAAGAAAAGAACTAAATGCAATT
*
104025252 ATAAAATAAAAGAACTAAATGCAATT
1 ATAAAAGAAAAGAACTAAATGCAATT
104025278 A
1 A
104025279 ACTCCTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.08, G:0.09, T:0.21
Consensus pattern (26 bp):
ATAAAAGAAAAGAACTAAATGCAATT
Found at i:104027825 original size:143 final size:143
Alignment explanation
Indices: 104027567--104027854 Score: 522
Period size: 143 Copynumber: 2.0 Consensus size: 143
104027557 CTCTCTTGTA
104027567 CACTGGCTGAATGTTTAAAATGTGTTATATCACTGTTAAGAGACACTGCATATCAGTGGTGGAAT
1 CACTGGCTGAATGTTTAAAATGTGTTATATCACTGTTAAGAGACACTGCATATCAGTGGTGGAAT
*
104027632 ACGTCAGTATCTGTGGTACCGAGGGAGAGAGTCACCTGAAAATTCTTTCAGACCGAGTTCCGAAA
66 ACGTCAGTATCCGTGGTACCGAGGGAGAGAGTCACCTGAAAATTCTTTCAGACCGAGTTCCGAAA
104027697 GAAATACATAAGT
131 GAAATACATAAGT
104027710 CACTGGCTGAATGTTTAAAATGTGTTATATCACTGTTAAGAGACACTGCATATCAGTGGTGGAAT
1 CACTGGCTGAATGTTTAAAATGTGTTATATCACTGTTAAGAGACACTGCATATCAGTGGTGGAAT
* * ** *
104027775 ACGTTAGTATCCGTGGTATCGAGGGAGAGAGTCACCTGGGAATTCTTTCAGATCGAGTTCCGAAA
66 ACGTCAGTATCCGTGGTACCGAGGGAGAGAGTCACCTGAAAATTCTTTCAGACCGAGTTCCGAAA
104027840 GAAATACATAAGT
131 GAAATACATAAGT
104027853 CA
1 CA
104027855 ACGGTTTCTG
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
143 139 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (143 bp):
CACTGGCTGAATGTTTAAAATGTGTTATATCACTGTTAAGAGACACTGCATATCAGTGGTGGAAT
ACGTCAGTATCCGTGGTACCGAGGGAGAGAGTCACCTGAAAATTCTTTCAGACCGAGTTCCGAAA
GAAATACATAAGT
Found at i:104028289 original size:26 final size:26
Alignment explanation
Indices: 104028253--104028309 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
104028243 GTGCATCTAA
104028253 GACACGCCCGTGTTGTCACCCTGTGT
1 GACACGCCCGTGTTGTCACCCTGTGT
104028279 GACACGCCCGTGTTGTCACCCTGTGT
1 GACACGCCCGTGTTGTCACCCTGTGT
104028305 GACAC
1 GACAC
104028310 ACACGTTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.14, C:0.35, G:0.26, T:0.25
Consensus pattern (26 bp):
GACACGCCCGTGTTGTCACCCTGTGT
Found at i:104030321 original size:8 final size:8
Alignment explanation
Indices: 104030308--104030351 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
104030298 CTTTTATGTT
104030308 TTATTATA
1 TTATTATA
*
104030316 TTATTAAA
1 TTATTATA
104030324 TTATTATA
1 TTATTATA
*
104030332 TTAATATA
1 TTATTATA
104030340 TTATTATA
1 TTATTATA
104030348 TTAT
1 TTAT
104030352 ATACTTAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:104035885 original size:40 final size:40
Alignment explanation
Indices: 104035841--104035986 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 40
104035831 GACAATTCGA
*
104035841 CTATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTTGG
1 CTATGTATGGCACTTAGTGTGCGATTCGAAATAGCTTTGG
* * *
104035881 CTATGTATGGCTCTTAGTGTGCGTTTCGAAATAGCTTCGG
1 CTATGTATGGCACTTAGTGTGCGATTCGAAATAGCTTTGG
* * *
104035921 CTATGTATGACACTTAGTGTGCAAGATT-AAAATAG-TTTCAG
1 CTATGTATGGCACTTAGTGTGC--GATTCGAAATAGCTTT-GG
104035962 CTATGTATTGGCACTTAGTGTGCGA
1 CTATGTA-TGGCACTTAGTGTGCGA
104035987 GAATTTGAGT
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
40 60 0.66
41 14 0.15
42 17 0.19
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (40 bp):
CTATGTATGGCACTTAGTGTGCGATTCGAAATAGCTTTGG
Found at i:104044175 original size:25 final size:25
Alignment explanation
Indices: 104044144--104044198 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
104044134 CTCCAAATCG
*
104044144 TTTTCCCCAAATCCCTAACTTAGTT
1 TTTTCCCCAAATCCCTAACTTAATT
*
104044169 TTTTCCCCAATTCCCTAACTTAATT
1 TTTTCCCCAAATCCCTAACTTAATT
104044194 TTTTC
1 TTTTC
104044199 TTTCCCATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.31, G:0.02, T:0.45
Consensus pattern (25 bp):
TTTTCCCCAAATCCCTAACTTAATT
Found at i:104048580 original size:43 final size:44
Alignment explanation
Indices: 104048519--104048612 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 44
104048509 GCATTTTCCC
* *
104048519 ACAAACGCCACTATAGAACATAATCTTTAGGGGCGCTTT-TA-CT
1 ACAAACGCCACTAAAGAACATAATCTTTAGCGGCG-TTTCTAGCT
* * *
104048562 ACAAACGCCGCTAAAGAACATGATCTTTTGCGGCGTTTCTAGCT
1 ACAAACGCCACTAAAGAACATAATCTTTAGCGGCGTTTCTAGCT
104048606 ACAAACG
1 ACAAACG
104048613 TCACAACATG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
42 3 0.07
43 32 0.73
44 9 0.20
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
ACAAACGCCACTAAAGAACATAATCTTTAGCGGCGTTTCTAGCT
Found at i:104055564 original size:19 final size:19
Alignment explanation
Indices: 104055540--104055594 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
104055530 TTTAAGATAT
104055540 TATATTTATTTATAATTAA
1 TATATTTATTTATAATTAA
** * *
104055559 TATATTTAAATAAAATTAT
1 TATATTTATTTATAATTAA
*
104055578 TAATATTAATTTATAAT
1 T-ATATTTATTTATAAT
104055595 AAGTGTTTCA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATTTATTTATAATTAA
Found at i:104073981 original size:72 final size:72
Alignment explanation
Indices: 104073843--104073988 Score: 193
Period size: 72 Copynumber: 2.0 Consensus size: 72
104073833 CAAGGCGCCT
* * *
104073843 CTTGAAGCCCTTTTGTCTGACATGCAAGTAACAGGTACTGCTTCCTGCTCTAAGAAAAGTGATGA
1 CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTTCCTGCTCTAAGAAAAGAGATGA
104073908 TGGTTCC
66 TGGTTCC
* * * *
104073915 CTTGGAGCCCTTTTGTCAGACATGCAAGTCACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
1 CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATA---CTGCTTCCTGCTCTAAGAAAAGAGA
*
104073980 TGATAGTTC
63 TGATGGTTC
104073989 TCAACCTGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
72 33 0.51
75 32 0.49
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (72 bp):
CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTTCCTGCTCTAAGAAAAGAGATGA
TGGTTCC
Found at i:104078615 original size:116 final size:115
Alignment explanation
Indices: 104078407--104078634 Score: 447
Period size: 116 Copynumber: 2.0 Consensus size: 115
104078397 GGCAGGCCTA
104078407 GTTTATATGATTGTGAAAACCAGTTAAATGTGTCGCATTCCGATGTTGTAATCGGAAAAACAAAG
1 GTTTATATGATTGTGAAAACCAGTTAAATGTGTCGCATTCCGATGTTGTAATCGGAAAAACAAAG
104078472 AAATAGAACATACTCAAAAGGCTTTTGCAGCTTTGTCATTCTTTCGATGT
66 AAATAGAACATACTCAAAAGGCTTTTGCAGCTTTGTCATTCTTTCGATGT
104078522 GTTTAATATGATTGTGAAAACCAGTTAAATGTGTCGCATTCCGATGTTGTAATCGGAAAAACAAA
1 GTTT-ATATGATTGTGAAAACCAGTTAAATGTGTCGCATTCCGATGTTGTAATCGGAAAAACAAA
104078587 GAAATAGAACATACTCAAAAGGCTTTTGCAGCTTTGTCATTCTTTCGA
65 GAAATAGAACATACTCAAAAGGCTTTTGCAGCTTTGTCATTCTTTCGA
104078635 AATCCTAAGT
Statistics
Matches: 112, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
115 4 0.04
116 108 0.96
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (115 bp):
GTTTATATGATTGTGAAAACCAGTTAAATGTGTCGCATTCCGATGTTGTAATCGGAAAAACAAAG
AAATAGAACATACTCAAAAGGCTTTTGCAGCTTTGTCATTCTTTCGATGT
Found at i:104082774 original size:30 final size:29
Alignment explanation
Indices: 104082708--104082778 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
104082698 GAGAAGTTAG
*
104082708 GTAGGACTCTTATAATTAAAGAAGTTTTT
1 GTAGGACTCTTATAAATAAAGAAGTTTTT
* **
104082737 TTAGGACTCTTA-AAATAGAAGTGGTGTTTT
1 GTAGGACTCTTATAAATA-AAGAAGT-TTTT
104082767 GTAGGACT-TTAT
1 GTAGGACTCTTAT
104082779 TTAGTTGCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
28 4 0.12
29 19 0.56
30 11 0.32
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (29 bp):
GTAGGACTCTTATAAATAAAGAAGTTTTT
Found at i:104097373 original size:22 final size:22
Alignment explanation
Indices: 104097325--104097374 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
104097315 AAATCCATAA
*
104097325 AATTAAAAAAGAAAAACGAATC
1 AATTCAAAAAGAAAAACGAATC
*
104097347 AATTCAAAAATAATAAA-GAATC
1 AATTCAAAAAGAA-AAACGAATC
104097369 AATTCA
1 AATTCA
104097375 TTTTCAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.64, C:0.10, G:0.06, T:0.20
Consensus pattern (22 bp):
AATTCAAAAAGAAAAACGAATC
Found at i:104098726 original size:22 final size:23
Alignment explanation
Indices: 104098676--104098734 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
104098666 TATCTTCCAA
* *
104098676 TATTT-TATTATAAATATTTAAT
1 TATTTATATAATAAATATTAAAT
*
104098698 TAATTATATAATAAAT-TTAAAT
1 TATTTATATAATAAATATTAAAT
104098720 TATTTAT-TAGATAAA
1 TATTTATATA-ATAAA
104098735 ATGATAATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 20 0.65
23 9 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TATTTATATAATAAATATTAAAT
Found at i:104099574 original size:68 final size:68
Alignment explanation
Indices: 104099465--104099597 Score: 232
Period size: 68 Copynumber: 2.0 Consensus size: 68
104099455 GTGTGTTTTC
104099465 CAAATGAAATCTCATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAG
1 CAAATGAAATCTCATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAG
104099530 TTT
66 TTT
* *
104099533 CAAATGAAATC-CTATTCCTATTTATAGGAATTTTCATGTCTCTTCATAAAGACGTCTTTCAATA
1 CAAATGAAATCTC-ATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATA
104099597 G
65 G
104099598 GTGTCTTTCT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
67 1 0.02
68 61 0.98
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (68 bp):
CAAATGAAATCTCATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAG
TTT
Found at i:104104393 original size:20 final size:21
Alignment explanation
Indices: 104104370--104104408 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
104104360 ATTTAATTTC
*
104104370 TTTTTAT-TTAAATAAATAGG
1 TTTTTATATGAAATAAATAGG
104104390 TTTTTATATGAAATAAATA
1 TTTTTATATGAAATAAATA
104104409 AAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.49
Consensus pattern (21 bp):
TTTTTATATGAAATAAATAGG
Found at i:104105733 original size:6 final size:6
Alignment explanation
Indices: 104105722--104105755 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
104105712 ACTCCGTACC
* *
104105722 TTACTG TTACTG TTATTG TTATTG TTACTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
104105756 CATTATGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (6 bp):
TTACTG
Found at i:104105968 original size:18 final size:18
Alignment explanation
Indices: 104105869--104106057 Score: 90
Period size: 18 Copynumber: 10.4 Consensus size: 18
104105859 TAAATAAAGG
* * *
104105869 TACTAAATAATTGACTGC
1 TACTGAATAATTGATTGT
* * *
104105887 TACTGACTAACTGACTGT
1 TACTGAATAATTGATTGT
* * * *
104105905 TACTGGATAACTGACTGC
1 TACTGAATAATTGATTGT
** **
104105923 TACTGCGTAAATAAATTGT
1 TACTGAAT-AATTGATTGT
* *
104105942 TACTAAATAATTGATTAT
1 TACTGAATAATTGATTGT
* *
104105960 TACTGAATAATTTATCGT
1 TACTGAATAATTGATTGT
* *
104105978 TACTGAATAACTGACTGT
1 TACTGAATAATTGATTGT
** * * *
104105996 TAAAGAGTTATTGATTAT
1 TACTGAATAATTGATTGT
* * *
104106014 TATTGAATAACTAATTGT
1 TACTGAATAATTGATTGT
* * *
104106032 TATTGAATGATTGAATGT
1 TACTGAATAATTGATTGT
104106050 TACTGAAT
1 TACTGAAT
104106058 GAAACTGAAA
Statistics
Matches: 123, Mismatches: 47, Indels: 2
0.72 0.27 0.01
Matches are distributed among these distances:
18 113 0.92
19 10 0.08
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (18 bp):
TACTGAATAATTGATTGT
Found at i:104111146 original size:46 final size:48
Alignment explanation
Indices: 104111093--104111316 Score: 209
Period size: 47 Copynumber: 4.8 Consensus size: 48
104111083 ATGGTTGAGC
* *
104111093 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * * * *
104111140 -TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGG
* * * *
104111185 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGG
104111232 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--G
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACAGG
* *
104111280 -CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104111317 GCGGGTTACA
Statistics
Matches: 155, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
43 5 0.03
45 4 0.03
46 62 0.40
47 75 0.48
48 3 0.02
50 3 0.02
51 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:104111207 original size:47 final size:47
Alignment explanation
Indices: 104111142--104111262 Score: 242
Period size: 47 Copynumber: 2.6 Consensus size: 47
104111132 TGCAAATGTT
104111142 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
104111189 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
104111236 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
104111263 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
Found at i:104119055 original size:46 final size:46
Alignment explanation
Indices: 104119005--104119180 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
104118995 TGGTTGAGCA
* *
104119005 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
104119051 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
104119098 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
104119144 CCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104119181 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 63 0.59
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:104119163 original size:93 final size:93
Alignment explanation
Indices: 104119002--104119172 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
104118992 GGATGGTTGA
* *
104119002 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
104119067 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* ** * *
104119095 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
104119160 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
104119173 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:104121666 original size:15 final size:15
Alignment explanation
Indices: 104121646--104121677 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
104121636 ACGGGTTTTC
104121646 CTAAAGCTTCATCCT
1 CTAAAGCTTCATCCT
104121661 CTAAAGCTTCATCCT
1 CTAAAGCTTCATCCT
104121676 CT
1 CT
104121678 TTTTTCTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.34, G:0.06, T:0.34
Consensus pattern (15 bp):
CTAAAGCTTCATCCT
Found at i:104126040 original size:33 final size:33
Alignment explanation
Indices: 104125932--104126047 Score: 99
Period size: 33 Copynumber: 3.4 Consensus size: 33
104125922 ATATGTGCAT
* *
104125932 GTGTAAGACCATAGCTGGGCTATGAC-ATCATGAA
1 GTGTAAGACCATAGCTGGGCTATGGCAAT-A-CAA
* * * * **
104125966 GATGATAAGACCATATCTGGGATATGGTACTACGT
1 G-TG-TAAGACCATAGCTGGGCTATGGCAATACAA
* *
104126001 GAGTAAGACCATGGCTGGGCTATGGCAATACAA
1 GTGTAAGACCATAGCTGGGCTATGGCAATACAA
104126034 GTGTAAGACCATAG
1 GTGTAAGACCATAG
104126048 TTGGATTATG
Statistics
Matches: 61, Mismatches: 18, Indels: 7
0.71 0.21 0.08
Matches are distributed among these distances:
33 35 0.57
34 2 0.03
35 3 0.05
36 20 0.33
37 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (33 bp):
GTGTAAGACCATAGCTGGGCTATGGCAATACAA
Found at i:104126322 original size:17 final size:16
Alignment explanation
Indices: 104126293--104126325 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
104126283 ATGATGGTAC
104126293 ATGAAATAATGATATA
1 ATGAAATAATGATATA
104126309 ATGAAATGAATGATATA
1 ATGAAAT-AATGATATA
104126326 TGTTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (16 bp):
ATGAAATAATGATATA
Found at i:104137867 original size:15 final size:15
Alignment explanation
Indices: 104137847--104137876 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
104137837 CAACACTTGT
104137847 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
104137862 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
104137877 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:104141994 original size:32 final size:32
Alignment explanation
Indices: 104141955--104142019 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
104141945 AAGGAAAGAT
*
104141955 AACCAATATTTCGGCCCAACAGCTTCATAACC
1 AACCAATATTTCGGCCCAACAGCTTCAAAACC
104141987 AACCAATATTTCGGCCCAACAGCTTCAAAACC
1 AACCAATATTTCGGCCCAACAGCTTCAAAACC
104142019 A
1 A
104142020 TTGTTGCTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.34, G:0.09, T:0.20
Consensus pattern (32 bp):
AACCAATATTTCGGCCCAACAGCTTCAAAACC
Found at i:104144214 original size:47 final size:45
Alignment explanation
Indices: 104144144--104144366 Score: 198
Period size: 47 Copynumber: 4.8 Consensus size: 45
104144134 ATGTTTGTGT
* *
104144144 GCTAGTTTAAGACATGTCTGGGACATGCATTGGC-TACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTA-A-TATGAGA
* *
104144190 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTAATATGAGA
* * * **
104144238 GTTAGTCTAAGACATGTCTGGGACATGCATCGGCCTCTTGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAT-ATG-AGA
* * * *
104144284 GCCAGTGTAAGACCATGTCAGGGACATGGCATCGACTTAATGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTAATATGAGA
* *
104144331 GCCAGTGTAAAATCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
104144367 ATTATAACCT
Statistics
Matches: 144, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 32 0.22
47 77 0.53
48 31 0.22
49 1 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAATATGAGA
Found at i:104144312 original size:94 final size:94
Alignment explanation
Indices: 104144144--104144366 Score: 267
Period size: 94 Copynumber: 2.4 Consensus size: 94
104144134 ATGTTTGTGT
* * *
104144144 GCTAGTTTAAGACATGTCTGGGACATGCATTGG-CTACATTATGAGAGCTAGTGTAAGACCATGT
1 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCTACATTATGAGAGCCAGTGTAAGACCATGT
* * *
104144208 CTGGGACATGGCATCGGCATTAA-GATGAGT
66 CAGGGACATGGCATCGAC-TTAATG-TGAGA
*
104144238 GTTAGTCTAAGACATGTCTGGGACATGCATCGGCCT-C-TTGATGTA-AGCCAGTGTAAGACCAT
1 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCTACATT-ATG-AGAGCCAGTGTAAGACCAT
104144300 GTCAGGGACATGGCATCGACTTAATGTGAGA
64 GTCAGGGACATGGCATCGACTTAATGTGAGA
* * *
104144331 GCCAGTGTAAAATCATGTCTGGGACATGGCATCGGC
1 GCTAGTCTAAGA-CATGTCTGGGACAT-GCATCGGC
104144367 ATTATAACCT
Statistics
Matches: 112, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
93 18 0.16
94 83 0.74
95 11 0.10
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (94 bp):
GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCTACATTATGAGAGCCAGTGTAAGACCATGT
CAGGGACATGGCATCGACTTAATGTGAGA
Found at i:104154033 original size:25 final size:25
Alignment explanation
Indices: 104153995--104154044 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
104153985 AAAAATCGAC
*
104153995 CTAATCCCACAAATTTTTAAAAAAA
1 CTAATCCCACAAATATTTAAAAAAA
* *
104154020 CTAATCCGATAAATATTTAAAAAAA
1 CTAATCCCACAAATATTTAAAAAAA
104154045 ACCCAGCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.28
Consensus pattern (25 bp):
CTAATCCCACAAATATTTAAAAAAA
Found at i:104157050 original size:37 final size:37
Alignment explanation
Indices: 104157000--104157073 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
104156990 CAGTAGTATG
*
104157000 CCGAGTCTCTCAACAAAGATATGGCACACTTTAAGCA
1 CCGAGTCTCTCAACAAAGATATGGCAAACTTTAAGCA
104157037 CCGAGTCTCTCAACAAAGATATGGCAAACTTTAAGCA
1 CCGAGTCTCTCAACAAAGATATGGCAAACTTTAAGCA
104157074 TTCTTCGGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (37 bp):
CCGAGTCTCTCAACAAAGATATGGCAAACTTTAAGCA
Found at i:104158776 original size:41 final size:41
Alignment explanation
Indices: 104158719--104158798 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
104158709 GCTTAGTAAG
104158719 TACATATATGCAAATAAAGTGTAATTAAAAGAAAATCATGC
1 TACATATATGCAAATAAAGTGTAATTAAAAGAAAATCATGC
104158760 TACATATATGCAAATAAAGTGTAATTAAAAGAAAATCAT
1 TACATATATGCAAATAAAGTGTAATTAAAAGAAAATCAT
104158799 ATTCATCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.28
Consensus pattern (41 bp):
TACATATATGCAAATAAAGTGTAATTAAAAGAAAATCATGC
Found at i:104161560 original size:47 final size:47
Alignment explanation
Indices: 104161509--104161600 Score: 112
Period size: 47 Copynumber: 2.0 Consensus size: 47
104161499 GTATTTATTG
* * *
104161509 TTGATGGTAGTAATTAATTTTTTTATTGCGAGTATTCTTTGAAGAGA
1 TTGATAGTAGTAATTAATCTCTTTATTGCGAGTATTCTTTGAAGAGA
* * * * *
104161556 TTGATAGTAGTGATTAATCTCTTTGTTGTGAGTGTTTTTTGAAGA
1 TTGATAGTAGTAATTAATCTCTTTATTGCGAGTATTCTTTGAAGA
104161601 AGTAAACGGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.48
Consensus pattern (47 bp):
TTGATAGTAGTAATTAATCTCTTTATTGCGAGTATTCTTTGAAGAGA
Found at i:104162805 original size:26 final size:26
Alignment explanation
Indices: 104162750--104162836 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
104162740 AATTAGGTAA
*
104162750 TTAATTAATTAAACTTCAACATTAA-T-T
1 TTAATTAA-TAAA-TT-AAAATTAATTAT
104162777 TTAATTAATAAATTAAAATTAATTAT
1 TTAATTAATAAATTAAAATTAATTAT
* ** *
104162803 TTAATCAACCAA-TAAAAATAATTAAT
1 TTAATTAATAAATTAAAATTAATT-AT
104162829 TTAATTAA
1 TTAATTAA
104162837 ATAATTTACA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 7 0.14
25 13 0.25
26 23 0.45
27 8 0.16
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (26 bp):
TTAATTAATAAATTAAAATTAATTAT
Found at i:104165390 original size:6 final size:6
Alignment explanation
Indices: 104165360--104165403 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
104165350 TTTTCCATCA
* *
104165360 TTTTCT TTCTTTT TTCTTAT TTTTCT TTTTCT TTTTCT TTTTCT
1 TTTTCT TT-TTCT TT-TTCT TTTTCT TTTTCT TTTTCT TTTTCT
104165404 AGCCTTACTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 23 0.68
7 11 0.32
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:104165394 original size:21 final size:20
Alignment explanation
Indices: 104165360--104165398 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
104165350 TTTTCCATCA
104165360 TTTTCTTTCTTTTTTCTTAT
1 TTTTCTTTCTTTTTTCTTAT
*
104165380 TTTTCTTTTTCTTTTTCTT
1 TTTTCTTTCT-TTTTTCTT
104165399 TTTCTAGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTCTTTCTTTTTTCTTAT
Found at i:104174985 original size:30 final size:30
Alignment explanation
Indices: 104174951--104175019 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
104174941 AAAAAAACAA
* *
104174951 CAAATTTATTATTTTTAAAAGCTTGATGGT
1 CAAATTTACTATTTTTAAAAGCTTGATAGT
** * *
104174981 CAAATTCGGCTCTTTTTAAAAGGTTGATAGT
1 CAAATT-TACTATTTTTAAAAGCTTGATAGT
104175012 CAAATTTA
1 CAAATTTA
104175020 AGTAAAAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.42
Consensus pattern (30 bp):
CAAATTTACTATTTTTAAAAGCTTGATAGT
Found at i:104175563 original size:16 final size:16
Alignment explanation
Indices: 104175538--104175569 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
104175528 GTTCAACTCC
*
104175538 TAATATAAAGGCCTCT
1 TAATACAAAGGCCTCT
104175554 TAATACAAAGGCCTCT
1 TAATACAAAGGCCTCT
104175570 ACGATACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (16 bp):
TAATACAAAGGCCTCT
Found at i:104178720 original size:29 final size:29
Alignment explanation
Indices: 104178678--104178736 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
104178668 TGATTAGAAA
104178678 ATTGATGATAACAGAAAATTAAGCCACAT
1 ATTGATGATAACAGAAAATTAAGCCACAT
104178707 ATTGATGATAACAGAAAATTAAGCCACAT
1 ATTGATGATAACAGAAAATTAAGCCACAT
104178736 A
1 A
104178737 GTAGAAGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
ATTGATGATAACAGAAAATTAAGCCACAT
Found at i:104181859 original size:23 final size:23
Alignment explanation
Indices: 104181832--104181878 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
104181822 CTATCTTATC
104181832 TAACCTAGCTATCAATGAATCTT
1 TAACCTAGCTATCAATGAATCTT
104181855 TAACCTAGCTATCAATGAATCTT
1 TAACCTAGCTATCAATGAATCTT
104181878 T
1 T
104181879 CTTTCAGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (23 bp):
TAACCTAGCTATCAATGAATCTT
Found at i:104187123 original size:26 final size:26
Alignment explanation
Indices: 104187080--104187133 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
104187070 TATCTAGAGC
**
104187080 TCTTGATTAAAGGCTCTTCGTGAACT
1 TCTTGATTAAAAACTCTTCGTGAACT
* *
104187106 TCTTGATTAAAAATTCTTTGTGAACT
1 TCTTGATTAAAAACTCTTCGTGAACT
104187132 TC
1 TC
104187134 CTGACTATGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.43
Consensus pattern (26 bp):
TCTTGATTAAAAACTCTTCGTGAACT
Found at i:104187468 original size:23 final size:23
Alignment explanation
Indices: 104187439--104187482 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
104187429 AATACATGAA
104187439 AAATGATGAT-ACATGATATATGG
1 AAATGAT-ATCACATGATATATGG
*
104187462 AAATGATATCACTTGATATAT
1 AAATGATATCACATGATATAT
104187483 TGAAGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGATATCACATGATATATGG
Found at i:104188548 original size:27 final size:27
Alignment explanation
Indices: 104188518--104188574 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
104188508 TCCCTAAGTT
104188518 ATATTAATATCTCTTTCTAGAGTAAAA
1 ATATTAATATCTCTTTCTAGAGTAAAA
104188545 ATATTAATATCTCTTTCTAGAGTAAAA
1 ATATTAATATCTCTTTCTAGAGTAAAA
104188572 ATA
1 ATA
104188575 ACTGACTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (27 bp):
ATATTAATATCTCTTTCTAGAGTAAAA
Found at i:104197904 original size:11 final size:11
Alignment explanation
Indices: 104197885--104197919 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
104197875 ATGGAATGGA
104197885 AAAAATGAGAG
1 AAAAATGAGAG
*
104197896 AAAAGTGAGAG
1 AAAAATGAGAG
104197907 AAGAAATGAGAG
1 AA-AAATGAGAG
104197919 A
1 A
104197920 CTGATGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.60, C:0.00, G:0.31, T:0.09
Consensus pattern (11 bp):
AAAAATGAGAG
Found at i:104199677 original size:32 final size:32
Alignment explanation
Indices: 104199638--104199702 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
104199628 ATGCTCTATT
104199638 AAAAAATACATTCATGTCATTATTAAGCTAAC
1 AAAAAATACATTCATGTCATTATTAAGCTAAC
*
104199670 AAAAAATATATTCATGTCATTATTAAGCTAAC
1 AAAAAATACATTCATGTCATTATTAAGCTAAC
104199702 A
1 A
104199703 TAATAATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (32 bp):
AAAAAATACATTCATGTCATTATTAAGCTAAC
Found at i:104202221 original size:22 final size:21
Alignment explanation
Indices: 104202183--104202233 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
104202173 TGCTAAGTTG
104202183 ATAAAGATTAATCTATAAATT
1 ATAAAGATTAATCTATAAATT
*
104202204 ATAATAGATATAAT-TATATA-T
1 ATAA-AGAT-TAATCTATAAATT
104202225 -TAAAGATTA
1 ATAAAGATTA
104202234 TCATCTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 2 0.07
19 4 0.15
20 3 0.11
21 5 0.19
22 9 0.33
23 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (21 bp):
ATAAAGATTAATCTATAAATT
Found at i:104224510 original size:35 final size:39
Alignment explanation
Indices: 104224460--104224554 Score: 110
Period size: 38 Copynumber: 2.5 Consensus size: 39
104224450 CGGATAGATT
104224460 CGATGAGGCGTTGGTCGCCAC-T-TTT-CTTCG-ACTTAGC
1 CGATGA-GCGTTGGTCGCCACTTATTTGCTTCGAAC-TAGC
* *
104224497 CGATGA-CGTTGGTCGTCACTTATTTGCTTCGAACTATC
1 CGATGAGCGTTGGTCGCCACTTATTTGCTTCGAACTAGC
104224535 CGATGAGGCGTTGGTCGCCA
1 CGATGA-GCGTTGGTCGCCA
104224555 TTCTGGTGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
35 12 0.24
36 1 0.02
37 9 0.18
38 14 0.29
39 2 0.04
40 11 0.22
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (39 bp):
CGATGAGCGTTGGTCGCCACTTATTTGCTTCGAACTAGC
Found at i:104227736 original size:24 final size:24
Alignment explanation
Indices: 104227709--104227756 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
104227699 AGGAAGCCTG
104227709 GATAGAATTTCAAAGGCAATATCC
1 GATAGAATTTCAAAGGCAATATCC
104227733 GATAGAATTTCAAAGGCAATATCC
1 GATAGAATTTCAAAGGCAATATCC
104227757 TACTTTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (24 bp):
GATAGAATTTCAAAGGCAATATCC
Found at i:104229590 original size:11 final size:11
Alignment explanation
Indices: 104229576--104229624 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
104229566 CAATTTCACT
104229576 TTCAATTCAAA
1 TTCAATTCAAA
104229587 TTCACAATTC-AA
1 TT--CAATTCAAA
**
104229599 TTCAATTCTCA
1 TTCAATTCAAA
104229610 TTCAATTCAAA
1 TTCAATTCAAA
104229621 TTCA
1 TTCA
104229625 CTTTTCCACT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
10 6 0.19
11 16 0.50
12 4 0.12
13 6 0.19
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (11 bp):
TTCAATTCAAA
Found at i:104229960 original size:80 final size:80
Alignment explanation
Indices: 104229806--104229951 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 80
104229796 TTTCCAATCA
* * *** * *
104229806 AATTCAAATCACTAATTACTTTTCAATTAATATACATTTCAAATACTCACATGTTTTCTTCATTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATGAAGTCATAATTC
104229871 AATTCAATTTGATTC
66 AATTCAATTTGATTC
* * *
104229886 AATTCAAATCACT-TTTAGTTTCCAATCAATATAC-TTTCAAATATTCACAT-AAGTCATAATTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATGAAGTCATAATTC
104229948 AATT
66 AATT
104229952 ACTTAATTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
77 11 0.20
78 15 0.27
79 17 0.30
80 13 0.23
ACGTcount: A:0.37, C:0.18, G:0.03, T:0.42
Consensus pattern (80 bp):
AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATGAAGTCATAATTC
AATTCAATTTGATTC
Found at i:104230308 original size:16 final size:17
Alignment explanation
Indices: 104230277--104230309 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
104230267 AATTTCTATC
104230277 CAATTTATACCCTAATT
1 CAATTTATACCCTAATT
*
104230294 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
104230310 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
CAATTTATACCCTAATT
Done.