Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 31 of 373
Found at i:8786672 original size:35 final size:35
Alignment explanation
Indices: 8786633--8786704 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
8786623 ATTATAATGA
8786633 TAACTTTTATTGTTTTAATTAAAACCATGCAAAAT
1 TAACTTTTATTGTTTTAATTAAAACCATGCAAAAT
8786668 TAACTTTTATTGTTTTAATTAAAACCATGCAAAAT
1 TAACTTTTATTGTTTTAATTAAAACCATGCAAAAT
8786703 TA
1 TA
8786705 TGCCTTAACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (35 bp):
TAACTTTTATTGTTTTAATTAAAACCATGCAAAAT
Found at i:8793707 original size:19 final size:19
Alignment explanation
Indices: 8793683--8793762 Score: 128
Period size: 19 Copynumber: 4.3 Consensus size: 19
8793673 AATCTTTAAG
8793683 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
8793702 GATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATAT
8793721 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8793740 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8793757 GATATG
1 GATATG
8793763 ATATGATATG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
17 17 0.31
19 38 0.69
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8794955 original size:15 final size:15
Alignment explanation
Indices: 8794935--8794970 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8794925 GAACTATTCG
8794935 ATGTCTCTTTTAATA
1 ATGTCTCTTTTAATA
8794950 ATGTCTCTTTTAATA
1 ATGTCTCTTTTAATA
*
8794965 CTGTCT
1 ATGTCT
8794971 TCATTTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (15 bp):
ATGTCTCTTTTAATA
Found at i:8799148 original size:2 final size:2
Alignment explanation
Indices: 8799141--8799166 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8799131 AAATCACATA
8799141 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8799167 CCTTTACCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8800436 original size:20 final size:21
Alignment explanation
Indices: 8800400--8800441 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
8800390 CAAAATAAAA
*
8800400 ATTAATATAAACATAAT-AAT
1 ATTAATATAAAAATAATCAAT
8800420 ATTAATA-AAAAATTAATCAAT
1 ATTAATATAAAAA-TAATCAAT
8800441 A
1 A
8800442 AAAAAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 4 0.21
20 11 0.58
21 4 0.21
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTAATATAAAAATAATCAAT
Found at i:8801084 original size:16 final size:16
Alignment explanation
Indices: 8801046--8801091 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
8801036 AAGGTTTGTT
8801046 GAACTCAAATTTTCTC
1 GAACTCAAATTTTCTC
*
8801062 -AGTCTCAAATTTTCTC
1 GA-ACTCAAATTTTCTC
8801078 GAACTCAAACTTTT
1 GAACTCAAA-TTTT
8801092 GTGCTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.04
16 19 0.76
17 5 0.20
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (16 bp):
GAACTCAAATTTTCTC
Found at i:8803610 original size:11 final size:11
Alignment explanation
Indices: 8803594--8803628 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
8803584 CCGGATTCCC
8803594 CTCCCTTCTCT
1 CTCCCTTCTCT
8803605 CTCCCTTCTCT
1 CTCCCTTCTCT
8803616 CTTCCC-TCTCT
1 C-TCCCTTCTCT
8803627 CT
1 CT
8803629 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:8804151 original size:23 final size:23
Alignment explanation
Indices: 8804107--8804152 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8804097 ATATTACCAT
*
8804107 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
8804130 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
8804153 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:8804318 original size:19 final size:21
Alignment explanation
Indices: 8804294--8804337 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
8804284 GTTATATATT
*
8804294 TATATA-TTTATA-ATACGTA
1 TATATACTTGATATATACGTA
*
8804313 TATATACTTGATATATTCGTA
1 TATATACTTGATATATACGTA
8804334 TATA
1 TATA
8804338 CCTCGGTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 5 0.24
21 10 0.48
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (21 bp):
TATATACTTGATATATACGTA
Found at i:8804418 original size:19 final size:19
Alignment explanation
Indices: 8804383--8804421 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8804373 ATATATTACC
**
8804383 TAAATATTTTAGTATTATA
1 TAAATATTTTAACATTATA
8804402 TAAATATTTTAACATTATA
1 TAAATATTTTAACATTATA
8804421 T
1 T
8804422 TATATATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATA
Found at i:8816537 original size:44 final size:45
Alignment explanation
Indices: 8816448--8817783 Score: 1047
Period size: 44 Copynumber: 30.3 Consensus size: 45
8816438 ATAGATTGAA
* * * * * *
8816448 GAAGAAAGTAGATCTTGTCTTCATTGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTC-CTATATTGGTGGCGAAGTAGATC
* * * * *
8816493 GAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
*
8816537 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAG-TC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* *
8816580 GAAGAAAGCAGATCTTGTCTTCC-ATATTGGTGGCGAAGCAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
8816624 GAAGAAAGCAGATCTTGTCTT-C-ATATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * *
8816666 G-AGATATCAGATC-TATCTT-CTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
8816707 GAAGAT-GCAGATCTTGTCTTCC-ATATTGGTGGCGAAGTAG-TC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
*
8816749 GAA-A-AGCAGATCTTGTCTTCC-ATATT-GTGGCGAAGCAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * *
8816790 GAAGA-AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * *
8816833 GAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
*
8816877 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * *
8816921 GAAGAAAGTAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * *
8816966 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * *
8817010 GAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
*
8817054 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
8817098 GAAGAAAGTAGAT-TTGTCTTCC-ATATTGGT-GCGAAGCAGATTC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGA-TC
* * * * * * ** ***** *
8817141 AGTATCG-TAAGTAGATCGAGATATCAGATCCTATCTTCCTGTATTGGTAGGA-A
1 -G-A-AGAT-AGCAGATC---TTGTC--TTCCTATATTGGTGGCGAAGTA-GATC
** * *
8817194 GTGGATCGAAGATGCAGATATTGTCTTCC-ATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGAT-C-----TTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * *
8817244 GAAGAAAGTAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
8817289 GAAGAAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
**** * * *
8817334 GAAGA-AGCAGATCTTGTCTTCAGGCATTAG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* *
8817377 GAAGAT-GC-GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATT
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * * *
8817420 GCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * ** * *
8817464 AAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGAT-
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
8817507 GACGAT-GCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * *
8817551 GAAGAAAGCAGATCTTGTCTT-C-AGCATTAG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTA-TATTGGTGGCGAAGTAGATC
* * *
8817594 GAAGAT-GCCGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATT
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * * *
8817638 GCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * ** * * *
8817682 AAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGATT
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * *
8817726 GACGAT-GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
*
8817770 GAAGAAAGCAGATC
1 GAAGATAGCAGATC
8817784 GACAATGGCG
Statistics
Matches: 1028, Mismatches: 205, Indels: 116
0.76 0.15 0.09
Matches are distributed among these distances:
40 17 0.02
41 60 0.06
42 112 0.11
43 221 0.21
44 342 0.33
45 219 0.21
46 8 0.01
49 2 0.00
50 26 0.03
51 5 0.00
52 4 0.00
53 8 0.01
54 2 0.00
55 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
Found at i:8816601 original size:87 final size:89
Alignment explanation
Indices: 8816483--8817783 Score: 1110
Period size: 87 Copynumber: 14.8 Consensus size: 89
8816473 GTATTGGCGT
* * * * * * *
8816483 GAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
8816547 ATCTTGTCTTCCCATATTGGTGGC
66 ATCTTGTCTTCCCATATTGGTGGC
*
8816571 GAAGTAG-TCGAAGAAAGCAGATCTTGTCTTCC-ATATTGGTGGCGAAGCAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAG-AAGCA
* *
8816634 GATCTTGTCTT--CATATTGG-CGT
65 GATCTTGTCTTCCCATATTGGTGGC
* * * * * *
8816656 GAAGTAGATCG-AGATATCAGATC-TATCTT-CTATATTGGTAG-GAAGTGGATCGAAGATGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
8816717 ATCTTGTCTT-CCATATTGGTGGC
66 ATCTTGTCTTCCCATATTGGTGGC
*
8816740 GAAGTAG-TCG-A-AAAGCAGATCTTGTCTTCC-ATATT-GTGGCGAAGCAGATCGAAGAAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
*** * *
8816800 ATCTTGTCTTCATGTATTGG-CGT
66 ATCTTGTCTTCCCATATTGGTGGC
* * * * * * *
8816823 GAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
8816887 ATCTTGTCTTCCCATATTGGTGGC
66 ATCTTGTCTTCCCATATTGGTGGC
* * *
8816911 GAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAG-AAGCA
*** * *
8816976 GATCTTGTCTTCATGTATTGG-CGT
65 GATCTTGTCTTCCCATATTGGTGGC
* * * * * * *
8817000 GAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
8817064 ATCTTGTCTTCCCATATTGGTGGC
66 ATCTTGTCTTCCCATATTGGTGGC
* * *
8817088 GAAGTAGATCGAAGAAAGTAGAT-TTGTCTTCC-ATATTGGT-GCGAAGCAGATTCAGTATCGTA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGA-TC-G-A-AG-A
* * * * * * * *
8817150 AGTAGATCGAGATATCAGATCCTATCTTCCTGTATTGGTAG
61 AGCAGATC---TTGTC--TTCCCAT-AT--TG--GTGG--C
* * * *
8817191 GAAGTGGATCGAAG-ATGCAGATATTGTCTTCC-ATATTGGTGGCGAAGTAGATCGAAGAAAGTA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAG-AAGCA
*
8817254 GATATTGTCTTCCCATATTGGTGGC
65 GATCTTGTCTTCCCATATTGGTGGC
* *
8817279 GAAGTAGATCGAAGAAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
**** * * *
8817344 ATCTTGTCTTCAGGCATTAG-CGT
66 ATCTTGTCTTCCCATATTGGTGGC
* * * *
8817367 GAAGTAGATCGAAG-ATGC-GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAG-AAGCA
*** * *
8817430 GATCTTGTCTTCATGTATTGG-CGT
65 GATCTTGTCTTCCCATATTGGTGGC
* ** ** * * * *
8817454 GAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGAT-GACGATGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
*
8817517 ATATTGTCTTCCCATATTGGTGGC
66 ATCTTGTCTTCCCATATTGGTGGC
* * * * * *
8817541 GAAGTAGATCGAAGAAAGCAGATCTTGTCTT-C-AGCATTAG-CGTGAAGTAGATCGAAGATGCC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTA-TATTGGTGGCGAAGTAGATCGAAGAAGCA
8817603 GATCTTGTCTTCCCATATTGGTGGC
65 GATCTTGTCTTCCCATATTGGTGGC
* * * * * * * *
8817628 GAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAA-GAAGCA
** * *
8817692 GATCCGGTCTTCCTATATTGGTAG-
65 GATCTTGTCTTCCCATATTGGTGGC
* * * * * * *
8817716 GAAGTGGATTGACG-ATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAG-AAGCA
8817780 GATC
65 GATC
8817784 GACAATGGCG
Statistics
Matches: 983, Mismatches: 177, Indels: 106
0.78 0.14 0.08
Matches are distributed among these distances:
82 26 0.03
83 70 0.07
84 32 0.03
85 22 0.02
86 119 0.12
87 256 0.26
88 187 0.19
89 130 0.13
90 51 0.05
91 7 0.01
92 2 0.00
94 4 0.00
95 5 0.01
96 5 0.01
97 4 0.00
99 2 0.00
100 9 0.01
101 4 0.00
102 7 0.01
103 32 0.03
104 9 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (89 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAAGCAG
ATCTTGTCTTCCCATATTGGTGGC
Found at i:8817264 original size:191 final size:194
Alignment explanation
Indices: 8816974--8817332 Score: 505
Period size: 191 Copynumber: 1.9 Consensus size: 194
8816964 TCGAAGAAAG
* * * * *
8816974 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATT
1 CAGATCCTATCTTCATGTATTGGAGTGAAGTAGATCGAAGATAGCAGATACTATCTTCCTATATT
* * *
8817039 GGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
66 GGTAGGAAGTAGATCGAAGAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
*
8817104 AGTAGAT-TTGTCTT-CCATATTGGT-GCGAAGCAGATTCAGTATCGTAAGTAGATCGAGATAT
131 AGCAGATATTGTCTTCCCATATTGGTGGCGAAGCAGATTCAGTATCGTAAGTAGATCGAGATAT
* * * *
8817165 CAGATCCTATCTTCCTGTATTGGTAG-GAAGTGGATCGAAGAT-GCAGATATTGTCTTCC-ATAT
1 CAGATCCTATCTTCATGTATTGG-AGTGAAGTAGATCGAAGATAGCAGATACTATCTTCCTATAT
* *
8817227 TGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
65 TGGTAG-GAAGTAGATCGAAG-AAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
*
8817292 GAAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGAT
128 GAAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGCAGAT
8817333 CGAAGAAGCA
Statistics
Matches: 146, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
189 9 0.06
190 25 0.17
191 84 0.58
192 8 0.05
193 10 0.07
194 10 0.07
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (194 bp):
CAGATCCTATCTTCATGTATTGGAGTGAAGTAGATCGAAGATAGCAGATACTATCTTCCTATATT
GGTAGGAAGTAGATCGAAGAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
AGCAGATATTGTCTTCCCATATTGGTGGCGAAGCAGATTCAGTATCGTAAGTAGATCGAGATAT
Found at i:8817407 original size:131 final size:133
Alignment explanation
Indices: 8817149--8817783 Score: 578
Period size: 131 Copynumber: 4.8 Consensus size: 133
8817139 TCAGTATCGT
* * * * ** * *
8817149 AAGTAGATCG-AGATATCAGATCCTATCTTCCTGTATTGGTAGGAAGTGGATCGAAGATGCAGAT
1 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTAGGAAGTAGATCGAAGAAGCAGAT
* * *
8817213 ATTGTCTTC-CATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTCCCATATTGGTG
66 CTTGTCTTCACATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTG
8817277 GCG
131 GCG
* *
8817280 AAGTAGATCGAAGAAAGCAGATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAGCAGA
1 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTAG-GAAGTAGATCGAAGAAGCAGA
*** * * * *
8817345 TCTTGTCTTCAGGCATTAG-CGTGAAGTAGATCGAAG-ATGC-GATCTTGTCTTCCCATATTGGT
65 TCTTGTCTTCACATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGT
8817407 GGCG
130 GGCG
* * *** * * *
8817411 AAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGCAG
1 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTAG-GAAGTAGATCGAA-GAAGCAG
** * * * * *
8817475 ATCCGGTCTTC-CTATATTGGTAG-GAAGTGGAT-GACG-ATGCAGATATTGTCTTCCCATATTG
64 ATCTTGTCTTCAC-ATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTG
8817536 GTGGCG
128 GTGGCG
* * * *
8817542 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCAGCAT-TAGCGT--GAAGTAGATCGAAGATGCCG
1 AAGTAGATCGAAGAAAGCAGATCTTGTCTTC-CCATATTG-GTAGGAAGTAGATCGAAGAAGCAG
* * * ***
8817604 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGG
64 ATCTTGTCTTCACATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGG
* *
8817669 -CGTG
129 TGGCG
* ** ** * * * * *
8817673 AAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACGATGCAGAT
1 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTAGGAAGTAGATCGAAGAAGCAGAT
* * *
8817738 CTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
66 CTTGTCTTCACATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATC
8817784 GACAATGGCG
Statistics
Matches: 408, Mismatches: 79, Indels: 33
0.78 0.15 0.06
Matches are distributed among these distances:
129 22 0.05
130 45 0.11
131 184 0.45
132 110 0.27
133 43 0.11
134 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (133 bp):
AAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTAGGAAGTAGATCGAAGAAGCAGAT
CTTGTCTTCACATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTG
GCG
Found at i:8817571 original size:176 final size:177
Alignment explanation
Indices: 8816483--8817782 Score: 820
Period size: 177 Copynumber: 7.4 Consensus size: 177
8816473 GTATTGGCGT
* * * * * * *
8816483 GAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
* * * * *
8816546 GATCTTGTCTTCCCATATTGGTGGCGAAGTAG-TCGAAGAAAGCAGAT-CTTGTCTT-CCATATT
65 GATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATAC-GGTCTTCCCATATT
* * * *
8816608 GGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTT--CATATTGG-CG
129 GGTAGCGAAGTAGATCGAAG-AAGCAGATATTGTCTTCACATATTGGTAG
* * * * * *
8816655 TGAAGTAGATCG-AGATATCAGATC-TATCTT-CTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * * *
8816715 AGATCTTGTCTTC-CATATTGGTGGCGAAGTAG-TC-GA-AAAGCAGAT-CTTGTCTT-CCATAT
64 AGATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATAC-GGTCTTCCCATAT
* * * ** *
8816774 T-GTGGCGAAGCAGATCGAAGAAGCAGATCTTGTCTTCATGTATTGG-CG
128 TGGTAGCGAAGTAGATCGAAGAAGCAGATATTGTCTTCACATATTGGTAG
* * * * * * *
8816822 TGAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * * * * *
8816885 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGAT-CTTGTCTTCCCATAT
64 AGATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATAC-GGTCTTCCCATAT
* * * ** *
8816949 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CG
128 TGGTAGCGAAGTAGATCGAAG-AAGCAGATATTGTCTTCACATATTGGTAG
* * * * * * *
8816999 TGAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * * * * **
8817062 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGAT-TTGTCTT-CCATATT
64 AGATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATACGGTCTTCCCATATT
* * * *
8817125 GGT-GCGAAGCAGATTCAGTATCGTAAGTAGATCGAGATATCAGATCCTATCTTCCTGTATTGGT
129 GGTAGCG-A--AG--T-AG-ATCG-AAG-A-AGC-AGATAT-TG-T-CT-TC--AC-ATATTGGT
8817189 AG
176 AG
* * *
8817191 GAAGTGGATCGAAGATGCAGATATTGTCTT-CCATATTGGTGGCGAAGTAGATCGAAGAAAGTAG
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* * * **
8817255 ATATTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCCCATATTGG
66 ATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATACGGTCTTCCCATATTGG
* * *
8817320 TGGCGAAGTAGATCGAAGAAGCAGATCTTGTCTTCAGGCAT-TAGCGT--
131 TAGCGAAGTAGATCGAAGAAGCAGATATTGTCTTCA--CATATTG-GTAG
* *
8817367 GAAGTAGATCGAAGATGC-GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* ** * ** * *
8817431 ATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGG
66 ATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATACGGTCTTCCCATATTGG
* * * * *
8817495 TAG-GAAGTGGAT-GACGATGCAGATATTGTCTTCCCATATTGGTGG
131 TAGCGAAGTAGATCGAAGAAGCAGATATTGTCTTCACATATTGGTAG
* * * *
8817540 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAGCAT-TAGCGT---GAAGTAGATCGAAG-AT
1 -GAAGTAGATCGAAG-ATGCAGATCTTGTCTTC-CCATATTG-GTGGCGAAGTAGATCGAAGAAA
* * * * *** * ***
8817600 GCCGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGAT-CTTGTCTTCATGT
62 GCAGATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATAC-GGTCTTCCCAT
* * * * ***
8817664 ATTGG-CGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTC-CTATATTGGTAG
126 ATTGGTAGCGAAGTAGATCGAA-GAAGCAGATATTGTCTTCAC-ATATTGGTAG
* * * * *
8817716 GAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAG
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
8817781 AT
66 AT
8817783 CGACAATGGC
Statistics
Matches: 973, Mismatches: 96, Indels: 112
0.82 0.08 0.09
Matches are distributed among these distances:
165 16 0.02
166 19 0.02
167 44 0.05
168 13 0.01
169 27 0.03
170 86 0.09
171 30 0.03
172 16 0.02
173 58 0.06
174 110 0.11
175 81 0.08
176 139 0.14
177 155 0.16
178 3 0.00
179 3 0.00
180 4 0.00
181 5 0.01
182 5 0.01
183 7 0.01
184 7 0.01
185 2 0.00
186 4 0.00
187 6 0.01
188 4 0.00
189 11 0.01
190 23 0.02
191 73 0.08
192 8 0.01
193 11 0.01
194 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (177 bp):
GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
ATATTGTCTTCACATATTGGTCGCGAAGTAGATCAAAGAAAGCAGATACGGTCTTCCCATATTGG
TAGCGAAGTAGATCGAAGAAGCAGATATTGTCTTCACATATTGGTAG
Found at i:8817673 original size:218 final size:218
Alignment explanation
Indices: 8817260--8817783 Score: 917
Period size: 218 Copynumber: 2.4 Consensus size: 218
8817250 AGTAGATATT
* * * * *
8817260 GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCCCATATTGGTGGCG
1 GTCTTCCTATATTGGTAG-GAAGTGGAT-GACG-ATGCAGATATTGTCTTCCCATATTGGTGGCG
8817325 AAGTAGATCGAAG-AAGCAGATCTTGTCTTCAGGCATTAGCGTGAAGTAGATCGAAGATGCGATC
63 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCAGGCATTAGCGTGAAGTAGATCGAAGATGCGATC
8817389 TTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
128 TTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
8817454 GAAGTAGATCAAAGGTAGCAGATCCG
193 GAAGTAGATCAAAGGTAGCAGATCCG
8817480 GTCTTCCTATATTGGTAGGAAGTGGATGACGATGCAGATATTGTCTTCCCATATTGGTGGCGAAG
1 GTCTTCCTATATTGGTAGGAAGTGGATGACGATGCAGATATTGTCTTCCCATATTGGTGGCGAAG
8817545 TAGATCGAAGAAAGCAGATCTTGTCTTCA-GCATTAGCGTGAAGTAGATCGAAGATGCCGATCTT
66 TAGATCGAAGAAAGCAGATCTTGTCTTCAGGCATTAGCGTGAAGTAGATCGAAGATG-CGATCTT
8817609 GTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGA
130 GTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGA
8817674 AGTAGATCAAAGGTAGCAGATCCG
195 AGTAGATCAAAGGTAGCAGATCCG
* * *
8817698 GTCTTCCTATATTGGTAGGAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGTGAA
1 GTCTTCCTATATTGGTAGGAAGTGGA-TGACGATGCAGATATTGTCTTCCCATATTGGTGGCGAA
8817763 GTAGATCGAAGAAAGCAGATC
65 GTAGATCGAAGAAAGCAGATC
8817784 GACAATGGCG
Statistics
Matches: 293, Mismatches: 8, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
217 70 0.24
218 143 0.49
219 64 0.22
220 16 0.05
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (218 bp):
GTCTTCCTATATTGGTAGGAAGTGGATGACGATGCAGATATTGTCTTCCCATATTGGTGGCGAAG
TAGATCGAAGAAAGCAGATCTTGTCTTCAGGCATTAGCGTGAAGTAGATCGAAGATGCGATCTTG
TCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GTAGATCAAAGGTAGCAGATCCG
Found at i:8818897 original size:11 final size:11
Alignment explanation
Indices: 8818881--8818915 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
8818871 CCGGATTCCC
8818881 CTCCCTTCTCT
1 CTCCCTTCTCT
8818892 CTCCCTTCTCT
1 CTCCCTTCTCT
8818903 CTTCCC-TCTCT
1 C-TCCCTTCTCT
8818914 CT
1 CT
8818916 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:8819438 original size:23 final size:23
Alignment explanation
Indices: 8819394--8819439 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8819384 ATATTACCAT
*
8819394 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
8819417 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
8819440 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:8819705 original size:19 final size:19
Alignment explanation
Indices: 8819670--8819708 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8819660 ATATATTACC
**
8819670 TAAATATTTTAGTATTATA
1 TAAATATTTTAACATTATA
8819689 TAAATATTTTAACATTATA
1 TAAATATTTTAACATTATA
8819708 T
1 T
8819709 TATATATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATA
Found at i:8821391 original size:15 final size:15
Alignment explanation
Indices: 8821371--8821418 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
8821361 CAATAATATT
8821371 TTTAATATTTAAATG
1 TTTAATATTTAAATG
8821386 TTTAATATTATAAA--
1 TTTAATATT-TAAATG
8821400 TTTAA-ATTTAATATG
1 TTTAATATTTAA-ATG
8821415 TTTA
1 TTTA
8821419 TTTTCAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 3 0.10
13 4 0.14
14 5 0.17
15 13 0.45
16 4 0.14
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (15 bp):
TTTAATATTTAAATG
Found at i:8826031 original size:19 final size:20
Alignment explanation
Indices: 8826007--8826044 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8825997 GGTACCACCA
8826007 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
8826026 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
8826045 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:8826340 original size:46 final size:46
Alignment explanation
Indices: 8826273--8826394 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
8826263 CGCCCCTAAG
* * *
8826273 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
8826319 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
8826365 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
8826395 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:8826413 original size:46 final size:45
Alignment explanation
Indices: 8826271--8826413 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
8826261 CCCGCCCCTA
* ** *
8826271 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
* ** **
8826316 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
8826362 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
8826409 AGTGA
1 AGTGA
8826414 CATGTCACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:8827966 original size:40 final size:40
Alignment explanation
Indices: 8827911--8828114 Score: 338
Period size: 40 Copynumber: 5.1 Consensus size: 40
8827901 TGGATGATAA
8827911 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
8827951 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
8827991 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
8828031 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
8828071 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
8828111 CCGG
1 CCGG
8828115 TTAAATCCCA
Statistics
Matches: 155, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 153 0.99
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:8830141 original size:18 final size:19
Alignment explanation
Indices: 8830114--8830152 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8830104 CATTTGAAAC
8830114 AAAATAG-AAAATTTTGGA
1 AAAATAGAAAAATTTTGGA
*
8830132 AAAATTGAAAAATTTTGGA
1 AAAATAGAAAAATTTTGGA
8830151 AA
1 AA
8830153 CAGGGGTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
AAAATAGAAAAATTTTGGA
Found at i:8831552 original size:20 final size:20
Alignment explanation
Indices: 8831514--8831552 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8831504 TGAATTTTAG
*
8831514 TGAAAATTGTCATAACATGT
1 TGAAAATTGTAATAACATGT
* *
8831534 TGAAAATTTTAATACCATG
1 TGAAAATTGTAATAACATG
8831553 AATTGGATAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (20 bp):
TGAAAATTGTAATAACATGT
Found at i:8835161 original size:7 final size:7
Alignment explanation
Indices: 8835149--8835173 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8835139 TTAAAAACTT
8835149 AATTAAC
1 AATTAAC
8835156 AATTAAC
1 AATTAAC
8835163 AATTAAC
1 AATTAAC
8835170 AATT
1 AATT
8835174 CAATGTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAC
Found at i:8836764 original size:14 final size:14
Alignment explanation
Indices: 8836745--8836776 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8836735 ATGAAAGAAG
*
8836745 TTTTAAAATATAAA
1 TTTTAAAACATAAA
8836759 TTTTAAAACATAAA
1 TTTTAAAACATAAA
8836773 TTTT
1 TTTT
8836777 TGGAAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTTAAAACATAAA
Found at i:8847068 original size:33 final size:32
Alignment explanation
Indices: 8846977--8847120 Score: 135
Period size: 32 Copynumber: 4.4 Consensus size: 32
8846967 CTATCCAATT
* *
8846977 TGTATACACAAAGTGCACATAACCTTTTTAAG
1 TGTATACACAAAGTGCACCTAACCTTTTCAAG
* * * * * **
8847009 TGTACATATATAGTGTACCTTTCCTTTTCAAG
1 TGTATACACAAAGTGCACCTAACCTTTTCAAG
* *
8847041 TCGTATACACAAAGTACACCTAACCTTTCCAAG
1 T-GTATACACAAAGTGCACCTAACCTTTTCAAG
** * *
8847074 TGTGCACACAAAGTGCACATAACCTTTTCATG
1 TGTATACACAAAGTGCACCTAACCTTTTCAAG
8847106 TGGTATACACAAAGT
1 T-GTATACACAAAGT
8847121 ATACCTTTCC
Statistics
Matches: 84, Mismatches: 26, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
32 50 0.60
33 34 0.40
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (32 bp):
TGTATACACAAAGTGCACCTAACCTTTTCAAG
Found at i:8847075 original size:65 final size:65
Alignment explanation
Indices: 8846933--8847126 Score: 172
Period size: 65 Copynumber: 3.0 Consensus size: 65
8846923 GTGCACATTC
* * * * * * * * * *
8846933 CCTTTTCAAGTGGTACACACGAAGTGTACATACCCTATCCAATTTGTATACACAAAGTGCACATA
1 CCTTTCCAAGT-GTACACACAAAGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCTA
8846998 A
65 A
** * * * * * **
8846999 CCTTTTTAAGTGTACATATATAGTGTACCTTTCCTTTTCAAGTCGTATACACAAAGTACACCTAA
1 CCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCTAA
* * * *
8847064 CCTTTCCAAGTGTGCACACAAAGTGCACATAACCTTTTCATGTGGTATACACAAAGTATACCT
1 CCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCT
8847127 TTCCTTTTCA
Statistics
Matches: 101, Mismatches: 27, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
65 91 0.90
66 10 0.10
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (65 bp):
CCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTCGTATACACAAAGTACACCTAA
Found at i:8847097 original size:32 final size:32
Alignment explanation
Indices: 8846900--8847120 Score: 154
Period size: 33 Copynumber: 6.8 Consensus size: 32
8846890 ATGGATCTTT
* * * **
8846900 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAG-TGTACACACAAAGTGCACATAA
* * *
8846933 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* * * *
8846966 CCTATCCAATTTGTATACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACAAAGTGCACATAA
* * * * * * **
8846999 CCTTTTTAAGTGTACATATATAGTGTACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* * *
8847031 CCTTTTCAAGTCGTATACACAAAGTACACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* *
8847064 CCTTTCCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* *
8847096 CCTTTTCATGTGGTATACACAAAGT
1 CCTTTTCAAGT-GTACACACAAAGT
8847121 ATACCTTTCC
Statistics
Matches: 141, Mismatches: 43, Indels: 8
0.73 0.22 0.04
Matches are distributed among these distances:
32 51 0.36
33 89 0.63
34 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGCACATAA
Found at i:8847192 original size:29 final size:29
Alignment explanation
Indices: 8847129--8847223 Score: 163
Period size: 29 Copynumber: 3.2 Consensus size: 29
8847119 GTATACCTTT
*
8847129 CCTTTTCACATTCGATAGCCAAAAGCTATC
1 CCTTTTCGCATTCGATAGCC-AAAGCTATC
8847159 CCTTTTCGCATTCGATAGCCAAAGCTATC
1 CCTTTTCGCATTCGATAGCCAAAGCTATC
*
8847188 CCTTTTCGCATTCGATAGCCGAAGCTATC
1 CCTTTTCGCATTCGATAGCCAAAGCTATC
8847217 CCTTTTC
1 CCTTTTC
8847224 ACATGGTACA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
29 44 0.70
30 19 0.30
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.33
Consensus pattern (29 bp):
CCTTTTCGCATTCGATAGCCAAAGCTATC
Found at i:8854241 original size:65 final size:65
Alignment explanation
Indices: 8854135--8854311 Score: 156
Period size: 65 Copynumber: 2.7 Consensus size: 65
8854125 TTTTCACGTG
* * * * * * * * * * *
8854135 GTACACACGAAGTGTACATACCCTATCCAATTTGTACACACAAAGTGCACATAACCTTTTTAAGT
1 GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTACACATAACCTTTTCAAAT
* * * * ** * *
8854200 GTACACATATAGTGTACCTTTCCTTTTCAAGTAGTATACACAAAGTATACCTAACCTTTTCAAAT
1 GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTACACATAACCTTTTCAAAT
* * *
8854265 GTGCACACAAAGTGCACATAACCTTTTCATGTGGTATACACAAAGTA
1 GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTA
8854312 TACCTTTCCT
Statistics
Matches: 87, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
65 87 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (65 bp):
GTACACACAAAGTGCACATAACCTTTTCAAGTAGTATACACAAAGTACACATAACCTTTTCAAAT
Found at i:8854287 original size:32 final size:32
Alignment explanation
Indices: 8854090--8854310 Score: 154
Period size: 33 Copynumber: 6.8 Consensus size: 32
8854080 ATGGACCTTT
* * * **
8854090 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAG-TGTACACACAAAGTGCACATAA
* * * *
8854123 CCTTTTCACGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* * *
8854156 CCTATCCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACAAAGTGCACATAA
* * * * * **
8854189 CCTTTTTAAGTGTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* ** *
8854221 CCTTTTCAAGTAGTATACACAAAGTATACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* *
8854254 CCTTTTCAAATGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* *
8854286 CCTTTTCATGTGGTATACACAAAGT
1 CCTTTTCAAGT-GTACACACAAAGT
8854311 ATACCTTTCC
Statistics
Matches: 143, Mismatches: 41, Indels: 8
0.74 0.21 0.04
Matches are distributed among these distances:
32 52 0.36
33 90 0.63
34 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGCACATAA
Found at i:8854380 original size:29 final size:29
Alignment explanation
Indices: 8854319--8854387 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
8854309 GTATACCTTT
** *
8854319 CCTTTTCACATTCGATAGCCAAAGTTATC
1 CCTTTTCACATTCGATAGCCAAACCTATA
* * *
8854348 CCTTTTCGCATTCGATAGTCGAACCTATA
1 CCTTTTCACATTCGATAGCCAAACCTATA
8854377 CCTTTTCACAT
1 CCTTTTCACAT
8854388 GGTATACACA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.36
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCAAACCTATA
Found at i:8863938 original size:54 final size:55
Alignment explanation
Indices: 8863879--8864005 Score: 134
Period size: 54 Copynumber: 2.3 Consensus size: 55
8863869 CGTGTCAATC
* *
8863879 TAACAGGTTCGACCACGGGTGC-TAGACACGGGCGTGTCACACG-CCGTGCTGTTT
1 TAACAGGTTC-ACCACGGGTGCTTACACACGGGCGTGTCACACGCCCGTACTGTTT
* * * *
8863933 TAACAGGTTCACCCAC-GGTTCTTCCACACGGGCGTGTCGCACGCCCGTATTGTTT
1 TAACAGGTTCA-CCACGGGTGCTTACACACGGGCGTGTCACACGCCCGTACTGTTT
**
8863988 TGGCAGGTTCAACCACGG
1 TAACAGGTTC-ACCACGG
8864006 CCATGTCGCA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
53 5 0.08
54 32 0.53
55 21 0.35
56 2 0.03
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.24
Consensus pattern (55 bp):
TAACAGGTTCACCACGGGTGCTTACACACGGGCGTGTCACACGCCCGTACTGTTT
Found at i:8867904 original size:39 final size:40
Alignment explanation
Indices: 8867743--8867966 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
8867733 GCTCATCGTT
* *
8867743 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
8867783 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
8867823 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
8867863 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
8867902 CAAATGCCTTC-GAATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
8867943 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8867967 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 47 0.29
40 103 0.64
41 9 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:8867928 original size:79 final size:81
Alignment explanation
Indices: 8867743--8867966 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 81
8867733 GCTCATCGTT
* * * * * * *
8867743 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGAACTTAACTCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
8867807 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
* *
8867823 CAAATGCCTTCGGGACTTAACTCGGAT-TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCTG
1 CAAATGCCTTCGGAACTTAACTCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
8867886 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
* * *
8867902 CAAATGCCTTC-GAATCTT-AGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGC
1 CAAATGCCTTCGGAA-CTTAACT-CGGATATTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
8867962 CCGGA
63 CCGGA
8867967 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
78 13 0.10
79 56 0.45
80 55 0.44
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGAACTTAACTCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
GAATTAGTAACTCGCA
Found at i:8877056 original size:13 final size:13
Alignment explanation
Indices: 8877038--8877071 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
8877028 ACCTCCTTGG
8877038 ATTAAATTATTAA
1 ATTAAATTATTAA
8877051 ATTAAAATTATTAA
1 ATT-AAATTATTAA
8877065 A-TAAATT
1 ATTAAATT
8877072 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:8877133 original size:23 final size:23
Alignment explanation
Indices: 8877107--8877151 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
8877097 GAGTCAGTCA
8877107 AAAAAAGGTATGTTAATTAATCT
1 AAAAAAGGTATGTTAATTAATCT
8877130 AAAAAAGGTATGTTAATTAATC
1 AAAAAAGGTATGTTAATTAATC
8877152 AACGGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.33
Consensus pattern (23 bp):
AAAAAAGGTATGTTAATTAATCT
Found at i:8881451 original size:106 final size:107
Alignment explanation
Indices: 8881276--8881480 Score: 277
Period size: 106 Copynumber: 1.9 Consensus size: 107
8881266 TTGACACATA
* * * *
8881276 TCAAGCATTGAAATCCATTTCTCAAGACATAACTTATCAAGTCTAAAAACTCAATCTTGAGACAG
1 TCAAGCATTGAAATCCATGTCTCAAAACATAACTTATCAAGTCTAAAAACTCAATCTCGAGACAA
8881341 ACCTC-ATTGTTTCGCTATTTTAACTTCAATGTTGGCATGTC
66 ACCTCTATTGTTTCGCTATTTTAACTTCAATGTTGGCATGTC
* ** * * * *
8881382 TCAAGCATTGAAATCCATGTCTCAAAACATAACTTCTCAAGTCTGGATATTGAGTCTCGAGACAA
1 TCAAGCATTGAAATCCATGTCTCAAAACATAACTTATCAAGTCTAAAAACTCAATCTCGAGACAA
* * *
8881447 ACCTCTCTTGTTTCGCTATTTTAGCTTCACTGTT
66 ACCTCTATTGTTTCGCTATTTTAACTTCAATGTT
8881481 TGGATATCTT
Statistics
Matches: 84, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
106 59 0.70
107 25 0.30
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (107 bp):
TCAAGCATTGAAATCCATGTCTCAAAACATAACTTATCAAGTCTAAAAACTCAATCTCGAGACAA
ACCTCTATTGTTTCGCTATTTTAACTTCAATGTTGGCATGTC
Found at i:8884834 original size:215 final size:215
Alignment explanation
Indices: 8884463--8884892 Score: 709
Period size: 215 Copynumber: 2.0 Consensus size: 215
8884453 GTAGTTATTT
* * *
8884463 CCTTTGTTTTGTAGATCATCCGAAAGCTTGACTAGTTGGAATCTCATCGGAGAATAATCACACTA
1 CCTTTGTTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATCTCATCGAAGAACAATCACACTA
* *
8884528 TCCATCTGTCATTTTGGTAGTTTTTGGTTAGTTTGGCAAATGGTTATAAATGGCATGTATATGGC
66 TCCATCTGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGGC
* * *
8884593 TAAAACATTACCTTGGTCCTTTGGTTGTTTTGAGTTTGTGCTCAGCCTATTTGTGGTTAAATGCC
131 TAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGCC
8884658 CTAGTTGTTGTAGGTTTGTA
196 CTAGTTGTTGTAGGTTTGTA
* * * * *
8884678 CCTTTGTTTTTTAGATCATCCAAAAGCTTGATTGGTTGGAATCTTC-TTGAAGCACAATCACACT
1 CCTTTGTTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATC-TCATCGAAGAACAATCACACT
8884742 ATCCATCTGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGG
65 ATCCATCTGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGG
* *
8884807 CTACAACATTATCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGC
130 CTAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGC
8884872 CCTAGTTGTTGTAGGTTTGTA
195 CCTAGTTGTTGTAGGTTTGTA
8884893 AATGATTATA
Statistics
Matches: 199, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
215 197 0.99
216 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.41
Consensus pattern (215 bp):
CCTTTGTTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATCTCATCGAAGAACAATCACACTA
TCCATCTGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATAGGGC
TAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATGCC
CTAGTTGTTGTAGGTTTGTA
Found at i:8890756 original size:21 final size:21
Alignment explanation
Indices: 8890730--8890785 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
8890720 AACAGCGGTG
*
8890730 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
8890751 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
8890772 GCGGTAAGATTAGA
1 GCGGTGAGATTAGA
8890786 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:8891230 original size:30 final size:30
Alignment explanation
Indices: 8891191--8891632 Score: 608
Period size: 30 Copynumber: 15.1 Consensus size: 30
8891181 GAATACGCCG
* *
8891191 AATATACTACATATATTTTTTTATTTTTAC
1 AATACACTACATATATTTTTTTATTTTTAA
8891221 AATACACTACATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
8891251 AATACACTACATATA--TTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
*
8891279 AATACACTACACATATTTTTTTTATTTTTAA
1 AATACACTACATATA-TTTTTTTATTTTTAA
8891310 AATACACTACATATA--TTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
*
8891338 AATACACTACACATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
8891368 AATACACTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
8891397 AATACACTACATATATTTTTTTTATTTTTAA
1 AATACACTACATATA-TTTTTTTATTTTTAA
*
8891428 AATACACTACATATATTTTTTTACTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
* * * *
8891458 AATACAATTCATATA--TATATA-TTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
* *
8891485 AATACACTACATATATTTTTTTATTTCTAG
1 AATACACTACATATATTTTTTTATTTTTAA
8891515 AATACACTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
* *
8891544 AATACACTACATATA----TATA-TATTAA
1 AATACACTACATATATTTTTTTATTTTTAA
8891569 AATACACTACA-AGTATTTTTTTTATTTTTAA
1 AATACACTACATA-TA-TTTTTTTATTTTTAA
* *
8891600 AATCCATTACATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
8891630 AAT
1 AAT
8891633 TTTAAATACA
Statistics
Matches: 369, Mismatches: 25, Indels: 36
0.86 0.06 0.08
Matches are distributed among these distances:
24 1 0.00
25 18 0.05
26 3 0.01
27 19 0.05
28 58 0.16
29 60 0.16
30 137 0.37
31 72 0.20
32 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (30 bp):
AATACACTACATATATTTTTTTATTTTTAA
Found at i:8891308 original size:59 final size:60
Alignment explanation
Indices: 8891191--8891632 Score: 581
Period size: 59 Copynumber: 7.5 Consensus size: 60
8891181 GAATACGCCG
* * *
8891191 AATATACTACATATATTTTTTTATTTTTACAATACACTACATATA-TTTTTTTATTTTTAA
1 AATACACTACATATA-TTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
8891251 AATACACTACATATA-TTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
8891310 AATACACTACATATA-TTTTTATTTTTAAAATACACTACACATA-TTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
*
8891368 AATACACTACATATATTTTTTATTTTTAAAATACACTACATATATTTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
* ** * * *
8891428 AATACACTACATATATTTTTTTACTTTTAAAATACA--ATTCATA-TATATATA-TTTTAA
1 AATACACTACATATA-TTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
* * *
8891485 AATACACTACATATATTTTTTTATTTCTAGAATACACT--ACATATATTTTTTATTTTTAA
1 AATACACTACATATA-TTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
* *
8891544 AATACACTACATATA---TATA-TATTAAAATACACTACA-AGTATTTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTATTTTTAAAATACACTACACA-TATTTTTTTTATTTTTAA
* *
8891600 AATCCATTACATATATTTTTTTATTTTTAAAAT
1 AATACACTACATATA-TTTTTTATTTTTAAAAT
8891633 TTTAAATACA
Statistics
Matches: 338, Mismatches: 28, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
54 11 0.03
55 4 0.01
56 31 0.09
57 43 0.13
58 65 0.19
59 110 0.33
60 47 0.14
61 27 0.08
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (60 bp):
AATACACTACATATATTTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAA
Found at i:8891354 original size:147 final size:145
Alignment explanation
Indices: 8891191--8891632 Score: 642
Period size: 147 Copynumber: 3.0 Consensus size: 145
8891181 GAATACGCCG
* *
8891191 AATATACTACATATATTTTTTTATTTTTACAATACACTACATATATTTTTTTATTTTTAAAATAC
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATA-TTTTTTATTTTTAAAATAC
*
8891256 ACTACATATATTTTTATTTTTAAAATACACTACACATATTTTTTTTATTTTTAAAATACACTACA
65 ACTACATATATTTTTATTTTTAAAATACACTACA-ATATTTTTTTTATTTTTAAAATACAATACA
8891321 TATATTTTTATTTTTAA
129 TATATTTTTATTTTTAA
*
8891338 AATACACTACACATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
* *
8891403 CTACATATATTTTTTTTATTTTTAAAATACACTAC-ATATATTTTTTTACTTTTAAAATACAATT
66 CTACATATA---TTTTTATTTTTAAAATACACTACAATAT-TTTTTTTATTTTTAAAATACAATA
* *
8891467 CATATATATATA-TTTTAA
127 CATATATTTTTATTTTTAA
* *
8891485 AATACACTACATATATTTTTTTATTTCTAGAATACACTACATATATTTTTTATTTTTAAAATACA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
* * * *
8891550 CTACATATA--TATA-TATTAAAATACACTACAAGTATTTTTTTTATTTTTAAAATCCATTACAT
66 CTACATATATTTTTATTTTTAAAATACACTACAA-TATTTTTTTTATTTTTAAAATACAATACAT
8891612 ATATTTTTTTATTTTTAA
130 ATA--TTTTTATTTTTAA
8891630 AAT
1 AAT
8891633 TTTAAATACA
Statistics
Matches: 267, Mismatches: 19, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
141 15 0.06
142 30 0.11
143 3 0.01
144 4 0.01
145 9 0.03
146 29 0.11
147 123 0.46
148 31 0.12
149 23 0.09
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (145 bp):
AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
CTACATATATTTTTATTTTTAAAATACACTACAATATTTTTTTTATTTTTAAAATACAATACATA
TATTTTTATTTTTAA
Found at i:8891738 original size:13 final size:13
Alignment explanation
Indices: 8891720--8891805 Score: 70
Period size: 13 Copynumber: 6.5 Consensus size: 13
8891710 CCATGCAATA
8891720 CCCATTCCCATTT
1 CCCATTCCCATTT
*
8891733 CCCATTCCCATCTC
1 CCCATTCCCAT-TT
* **
8891747 CCCTCTTCCACCGTT
1 CCC-ATTCC-CATTT
8891762 CCC-TCCTCCCA-TT
1 CCCAT--TCCCATTT
8891775 CCCATTCCCATTT
1 CCCATTCCCATTT
8891788 CCCATTCCCA-TT
1 CCCATTCCCATTT
8891800 CCCATT
1 CCCATT
8891806 ATCAACAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
12 13 0.22
13 29 0.48
14 6 0.10
15 11 0.18
16 1 0.02
ACGTcount: A:0.13, C:0.52, G:0.01, T:0.34
Consensus pattern (13 bp):
CCCATTCCCATTT
Found at i:8891779 original size:6 final size:6
Alignment explanation
Indices: 8891768--8891805 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
8891758 CGTTCCCTCC
8891768 TCCCAT TCCCAT TCCCATT TCCCAT TCCCAT TCCCAT T
1 TCCCAT TCCCAT TCCCA-T TCCCAT TCCCAT TCCCAT T
8891806 ATCAACAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.16, C:0.47, G:0.00, T:0.37
Consensus pattern (6 bp):
TCCCAT
Found at i:8908554 original size:4 final size:5
Alignment explanation
Indices: 8908479--8908551 Score: 67
Period size: 5 Copynumber: 13.6 Consensus size: 5
8908469 AAGCCATCCC
*
8908479 TTTTA TTTTA TTTTA TTTTA TTATTA TTTGTTA TATTA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA -TT-TTA TTTTA TTTTA TTTTA
*
8908526 CTAATTCA TTTTA TTTTA TTTTA TTT
1 -T--TTTA TTTTA TTTTA TTTTA TTT
8908552 ATTATTCTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
4 3 0.05
5 40 0.70
6 5 0.09
7 6 0.11
8 3 0.05
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:8909250 original size:26 final size:27
Alignment explanation
Indices: 8909221--8909280 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
8909211 CATGATAGAC
8909221 TATGTTTCAGAAATTAAAATTTTT-AG
1 TATGTTTCAGAAATTAAAATTTTTAAG
8909247 TATGTTTCAGAAATTAAAATTTTTAAG
1 TATGTTTCAGAAATTAAAATTTTTAAG
8909274 T-TGTTTC
1 TATGTTTC
8909281 CCTGAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 30 0.91
27 3 0.09
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (27 bp):
TATGTTTCAGAAATTAAAATTTTTAAG
Found at i:8913573 original size:6 final size:6
Alignment explanation
Indices: 8913564--8913613 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
8913554 ATAAAATCAA
*
8913564 AAAATT AAAATT AAAATT AAAATT AAAATAA ATAAATT -AAATT -AAATT
1 AAAATT AAAATT AAAATT AAAATT AAAAT-T A-AAATT AAAATT AAAATT
8913612 AA
1 AA
8913614 GATTTTCCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 10 0.26
6 24 0.62
7 1 0.03
8 4 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:8913584 original size:26 final size:25
Alignment explanation
Indices: 8913546--8913609 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
8913536 AGCCTAAACT
* *
8913546 AATTTAATATAAAATCAAAA-AATTAA
1 AATTAAAT-TAAAATCAAAATAAAT-A
*
8913572 AATTAAAATTAAAATTAAAATAAATA
1 AATT-AAATTAAAATCAAAATAAATA
8913598 AATTAAATTAAA
1 AATTAAATTAAA
8913610 TTAAGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
25 8 0.24
26 19 0.58
27 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (25 bp):
AATTAAATTAAAATCAAAATAAATA
Found at i:8913604 original size:5 final size:5
Alignment explanation
Indices: 8913565--8913613 Score: 55
Period size: 5 Copynumber: 9.4 Consensus size: 5
8913555 TAAAATCAAA
*
8913565 AAATT AAAATT AAAATT AAAATT AAAAT AAA-T AAATT AAATT AAATT
1 AAATT -AAATT -AAATT -AAATT AAATT AAATT AAATT AAATT AAATT
8913612 AA
1 AA
8913614 GATTTTCCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
4 4 0.10
5 20 0.49
6 17 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (5 bp):
AAATT
Found at i:8913610 original size:14 final size:14
Alignment explanation
Indices: 8913555--8913610 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
8913545 TAATTTAATA
8913555 TAAAATCAAA-AAAT
1 TAAAAT-AAATAAAT
8913569 TAAAATTAAAATTAAAAT
1 TAAAA-T-AAA-T-AAAT
8913587 TAAAATAAATAAAT
1 TAAAATAAATAAAT
*
8913601 TAAATTAAAT
1 TAAAATAAAT
8913611 TAAGATTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 18 0.50
15 5 0.14
16 3 0.08
17 1 0.03
18 9 0.25
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAATAAATAAAT
Found at i:8927780 original size:26 final size:26
Alignment explanation
Indices: 8927744--8927853 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
8927734 TGATACAAAT
8927744 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8927770 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
8927796 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* ** *
8927822 TGATAATGGGTTACATAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8927848 TGATAA
1 TGATAA
8927854 GAATTTCATA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:8929886 original size:137 final size:137
Alignment explanation
Indices: 8929640--8929925 Score: 527
Period size: 137 Copynumber: 2.1 Consensus size: 137
8929630 AGTAGTCTCT
* *
8929640 CCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCAAATGGGCTTGCATACGTTTACCGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
8929705 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
8929770 CTGTTAC
131 CTGTTAC
8929777 CCAAATGGGCTTGCATACGTTTACCGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCAAATGGGCTTGCATACGTTTACCGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
8929842 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
8929907 CTGTTAC
131 CTGTTAC
**
8929914 CTGAATGGGCTT
1 CCAAATGGGCTT
8929926 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCAAATGGGCTTGCATACGTTTACCGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTAC
Found at i:8930867 original size:5 final size:5
Alignment explanation
Indices: 8930857--8931005 Score: 277
Period size: 5 Copynumber: 30.4 Consensus size: 5
8930847 TAATTGATAT
8930857 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8930907 TATT- TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8930956 TATTA TA-T- TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8931004 TA
1 TA
8931006 ACTAAACTAA
Statistics
Matches: 141, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
3 2 0.01
4 6 0.04
5 133 0.94
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:8932082 original size:37 final size:38
Alignment explanation
Indices: 8931982--8932082 Score: 87
Period size: 37 Copynumber: 2.6 Consensus size: 38
8931972 GACCTCGAGT
* **
8931982 CGATGAGACACAGGGTGTCATACTGTTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AC--TTACTTCGGATAGAGC
** ** * *
8932023 CGATGAGGTACTGGGTACCAACTTACTTCGGCTTG-GC
1 CGATGAGACACTGGGTGTCAACTTACTTCGGATAGAGC
8932060 CGATGAGACACTGGGTGTCAACT
1 CGATGAGACACTGGGTGTCAACT
8932083 ATTGCTTCGA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
37 19 0.40
38 11 0.23
40 2 0.04
41 15 0.32
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTTACTTCGGATAGAGC
Found at i:8933547 original size:12 final size:12
Alignment explanation
Indices: 8933530--8933578 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
8933520 ATTTCGAACA
8933530 TTTAAATATTAG
1 TTTAAATATTAG
*
8933542 TTTAAATAATACCG
1 TTTAAATATTA--G
*
8933556 TTT-AGTATTAG
1 TTTAAATATTAG
8933567 TTTAAATATTAG
1 TTTAAATATTAG
8933579 ACAACTACTG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 4 0.13
12 17 0.57
13 5 0.17
14 4 0.13
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (12 bp):
TTTAAATATTAG
Found at i:8936241 original size:11 final size:11
Alignment explanation
Indices: 8936225--8936249 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8936215 ACTGTAATAA
8936225 AATAAAGTTGT
1 AATAAAGTTGT
8936236 AATAAAGTTGT
1 AATAAAGTTGT
8936247 AAT
1 AAT
8936250 GTAATAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
AATAAAGTTGT
Found at i:8936476 original size:37 final size:37
Alignment explanation
Indices: 8936432--8936502 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
8936422 GTTGTTATTA
*
8936432 ATTTTAATAGGATTATTATTATAA-ATAATTTAATCAT
1 ATTTTAATAGAATTATTATTA-AATATAATTTAATCAT
*
8936469 ATTTTAATATAATTATTATTAAATATAATTTAAT
1 ATTTTAATAGAATTATTATTAAATATAATTTAAT
8936503 AAAATAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 29 0.94
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
ATTTTAATAGAATTATTATTAAATATAATTTAATCAT
Found at i:8936536 original size:27 final size:26
Alignment explanation
Indices: 8936456--8936538 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 26
8936446 ATTATTATAA
* *
8936456 ATAATTTAATCATATTTTAATATAATT
1 ATAA-TTAATAATTTTTTAATATAATT
* ** *
8936483 ATTATTAAATATAATTTAATAAAATAATAT
1 ATAATT--A-ATAATTTTTTAATATAAT-T
8936513 ATAATTAATAATTTTTTAATATAATT
1 ATAATTAATAATTTTTTAATATAATT
8936539 TTTTATATTA
Statistics
Matches: 42, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
26 3 0.07
27 18 0.43
28 2 0.05
29 13 0.31
30 6 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (26 bp):
ATAATTAATAATTTTTTAATATAATT
Found at i:8936552 original size:14 final size:13
Alignment explanation
Indices: 8936470--8936543 Score: 51
Period size: 13 Copynumber: 5.4 Consensus size: 13
8936460 TTTAATCATA
8936470 TTTTAATATAATT
1 TTTTAATATAATT
8936483 ATTATTAAATATAATT
1 -TT-TT-AATATAATT
** *
8936499 TAATAAAATAA-T
1 TTTTAATATAATT
* *
8936511 ATATAATTAATAATT
1 TTTTAA-T-ATAATT
8936526 TTTTAATATAATT
1 TTTTAATATAATT
8936539 TTTTA
1 TTTTA
8936544 TATTAAATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
12 5 0.11
13 17 0.36
14 8 0.17
15 8 0.17
16 9 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTTAATATAATT
Found at i:8937464 original size:46 final size:45
Alignment explanation
Indices: 8937414--8937507 Score: 115
Period size: 46 Copynumber: 2.1 Consensus size: 45
8937404 TTTTATAAAT
8937414 AAAATAGT-TATTAA-TTAAAAAGTTGAA-TTAAAACTAAT-AAAACTTG
1 AAAATA-TATATTAATTTAAAAA-TT-AATTTAAAA--AATAAAAACTTG
8937460 AAAATATATATTAATTTAAAAATTAATTTAAAAAATAAAAACTTG
1 AAAATATATATTAATTTAAAAATTAATTTAAAAAATAAAAACTTG
8937505 AAA
1 AAA
8937508 CAACATAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
44 3 0.07
45 14 0.32
46 20 0.45
47 7 0.16
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (45 bp):
AAAATATATATTAATTTAAAAATTAATTTAAAAAATAAAAACTTG
Found at i:8937495 original size:13 final size:12
Alignment explanation
Indices: 8937469--8937493 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8937459 GAAAATATAT
8937469 ATTAATTTAAAA
1 ATTAATTTAAAA
8937481 ATTAATTTAAAA
1 ATTAATTTAAAA
8937493 A
1 A
8937494 ATAAAAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTAATTTAAAA
Found at i:8939687 original size:50 final size:50
Alignment explanation
Indices: 8939568--8939892 Score: 417
Period size: 50 Copynumber: 6.5 Consensus size: 50
8939558 AGATGCTGAC
* * *
8939568 GCCATGTCCCAGACATGGTCTTACATTGGCTCAT-ACATCA---AAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTC-TCACAT-ATTGAAGCCGAT
* * * * *
8939616 GCCATGTCCCAGACATGGTCTTACACTGACTCTCAAATATCGAGGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
*
8939666 GCCATGTCCCAAATATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
* * *
8939716 GCCATGTTCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
* *
8939766 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGCCGTT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
* ** *
8939816 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCATC-TATCGGTGCAGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCTCTCA-CATATTGAAGCCGAT
*
8939866 GCCATGTTCCAAACATGGTCTTACACT
1 GCCATGTCCCAAACATGGTCTTACACT
8939893 AGCACTCATA
Statistics
Matches: 247, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 2 0.01
48 33 0.13
50 211 0.85
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATTGAAGCCGAT
Found at i:8939837 original size:150 final size:148
Alignment explanation
Indices: 8939568--8939892 Score: 467
Period size: 150 Copynumber: 2.2 Consensus size: 148
8939558 AGATGCTGAC
* *
8939568 GCCATGTCCCAGACATGGTCTTACATTGGCTCATACATCAAAGTCGATGCCATGTCCCAGACATG
1 GCCATGTTCCAGACATGGTCTTACACTGGCTCATACATCAAAGTCGATGCCATGTCCCAGACATG
* *
8939633 GTCTTACACTGACTCTCAAATATCGAGGCCGATGCCATGTCCCAAATATGGTCTTACACTGGCTC
66 GTCTTACACTGACTCTCAAATATCGAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
* *
8939698 TCA-CATATTGAAGCCGAT
131 TCATC-TATCGAAGCAGAT
8939716 GCCATGTTCCAGACATGGTCTTACACTGGCTC-TCACAT-ATTGAAGTCGATGCCATGTCCCAGA
1 GCCATGTTCCAGACATGGTCTTACACTGGCTCAT-ACATCA---AAGTCGATGCCATGTCCCAGA
* * * *
8939779 CATGGTCTTACACTGGCTCTCACATATTGAAGCCGTTGCCATGTCCCAAACATGGTCTTACACTG
62 CATGGTCTTACACTGACTCTCAAATATCGAAGCCGATGCCATGTCCCAAACATGGTCTTACACTG
**
8939844 GCTCTCATCTATCGGTGCAGAT
127 GCTCTCATCTATCGAAGCAGAT
*
8939866 GCCATGTTCCAAACATGGTCTTACACT
1 GCCATGTTCCAGACATGGTCTTACACT
8939893 AGCACTCATA
Statistics
Matches: 159, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
147 2 0.01
148 34 0.21
150 122 0.77
151 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (148 bp):
GCCATGTTCCAGACATGGTCTTACACTGGCTCATACATCAAAGTCGATGCCATGTCCCAGACATG
GTCTTACACTGACTCTCAAATATCGAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
TCATCTATCGAAGCAGAT
Found at i:8945804 original size:27 final size:27
Alignment explanation
Indices: 8945746--8945798 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
8945736 CAACTTAGTT
8945746 AAATTAGAACTAAGTAGGTAGTGTATA
1 AAATTAGAACTAAGTAGGTAGTGTATA
8945773 AAATTAGAACTAAGTAGGTAGTGTAT
1 AAATTAGAACTAAGTAGGTAGTGTAT
8945799 TTAATTTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.23, T:0.30
Consensus pattern (27 bp):
AAATTAGAACTAAGTAGGTAGTGTATA
Found at i:8964233 original size:27 final size:27
Alignment explanation
Indices: 8964175--8964247 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
8964165 TAGTTTGCCG
* **
8964175 AGACCATAAACACAGGATAGTCTGTCA
1 AGACAATAAACACAGGATAGTCCATCA
*
8964202 AGACAATAAACACAGGGTAGTCCATCA
1 AGACAATAAACACAGGATAGTCCATCA
* * *
8964229 GGACAGTAAACACGGGATA
1 AGACAATAAACACAGGATA
8964248 ATCCGCGGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.22, T:0.15
Consensus pattern (27 bp):
AGACAATAAACACAGGATAGTCCATCA
Found at i:8964303 original size:27 final size:27
Alignment explanation
Indices: 8964230--8964296 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
8964220 AGTCCATCAG
*
8964230 GACAGTAAACACGGGATAATCCGCGGT
1 GACAGTAAACACGGGATAGTCCGCGGT
*
8964257 GACAGTAAACACGGGATAGTCTGCGGT
1 GACAGTAAACACGGGATAGTCCGCGGT
8964284 GACAGTAAACACG
1 GACAGTAAACACG
8964297 AAGTAGTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.34, C:0.21, G:0.30, T:0.15
Consensus pattern (27 bp):
GACAGTAAACACGGGATAGTCCGCGGT
Found at i:8968211 original size:25 final size:26
Alignment explanation
Indices: 8968159--8968212 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
8968149 TCTTTTTGAA
* *
8968159 TTTCTATTTTTTTAATTTCTTTATAT
1 TTTCTATTTTTTTAATTTCTCTAAAT
8968185 TTTC-ATTTTTTTAAATTT-TCTAAAT
1 TTTCTATTTTTTT-AATTTCTCTAAAT
8968210 TTT
1 TTT
8968213 TAACTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (26 bp):
TTTCTATTTTTTTAATTTCTCTAAAT
Found at i:8968240 original size:28 final size:30
Alignment explanation
Indices: 8968190--8968252 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
8968180 TATATTTTCA
8968190 TTTTTTTAAATTTTCTAAATTTTT-AACTT
1 TTTTTTTAAATTTTCTAAATTTTTAAACTT
**
8968219 TTTTTTTAAATTTT-TATGTTTTTAGAACTT
1 TTTTTTTAAATTTTCTAAATTTTTA-AACTT
8968249 TTTT
1 TTTT
8968253 ATTTGTTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 7 0.23
29 14 0.47
30 9 0.30
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (30 bp):
TTTTTTTAAATTTTCTAAATTTTTAAACTT
Found at i:8968280 original size:11 final size:11
Alignment explanation
Indices: 8968264--8968300 Score: 51
Period size: 9 Copynumber: 3.5 Consensus size: 11
8968254 TTTGTTCAAA
8968264 TTTTTTGCAAT
1 TTTTTTGCAAT
8968275 TTTTTTG--AT
1 TTTTTTGCAAT
8968284 TTTTTTGCTAAT
1 TTTTTTGC-AAT
8968296 TTTTT
1 TTTTT
8968301 ATTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 9 0.39
11 7 0.30
12 7 0.30
ACGTcount: A:0.14, C:0.05, G:0.08, T:0.73
Consensus pattern (11 bp):
TTTTTTGCAAT
Found at i:8968306 original size:20 final size:19
Alignment explanation
Indices: 8968264--8968306 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
8968254 TTTGTTCAAA
8968264 TTTTTTGCAATTTTTTTGAT
1 TTTTTTGCAATTTTTTT-AT
8968284 TTTTTTGCTAA-TTTTTTAT
1 TTTTTTGC-AATTTTTTTAT
8968303 TTTT
1 TTTT
8968307 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 14 0.64
21 2 0.09
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.74
Consensus pattern (19 bp):
TTTTTTGCAATTTTTTTAT
Found at i:8968343 original size:21 final size:20
Alignment explanation
Indices: 8968296--8968343 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
8968286 TTTTGCTAAT
* *
8968296 TTTTTATTTTTATTTTTGAA
1 TTTTTATATTCATTTTTGAA
*
8968316 -TTATATATTCATTTTTGAA
1 TTTTTATATTCATTTTTGAA
8968335 TTGTTTATA
1 TT-TTTATA
8968344 ATAAATATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 16 0.73
20 1 0.05
21 5 0.23
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (20 bp):
TTTTTATATTCATTTTTGAA
Found at i:8968379 original size:26 final size:28
Alignment explanation
Indices: 8968345--8968399 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
8968335 TTGTTTATAA
8968345 TAAATATTTTTTAA-TTT-TGTTTATTTT
1 TAAATA-TTTTTAAGTTTATGTTTATTTT
*
8968372 TAAA-ATTTTTAAGTTTATTTTTATTTT
1 TAAATATTTTTAAGTTTATGTTTATTTT
8968399 T
1 T
8968400 TTTGAATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 7 0.28
26 4 0.16
27 14 0.56
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (28 bp):
TAAATATTTTTAAGTTTATGTTTATTTT
Found at i:8968662 original size:22 final size:21
Alignment explanation
Indices: 8968631--8968679 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
8968621 GCTTTTATTG
*
8968631 AATGAATTATAAACGAACATC
1 AATGAATTATAAACGAACATA
*
8968652 AATGAGATTATAAATGAACATA
1 AATGA-ATTATAAACGAACATA
8968674 AATGAA
1 AATGAA
8968680 CTGAACGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.55, C:0.08, G:0.12, T:0.24
Consensus pattern (21 bp):
AATGAATTATAAACGAACATA
Found at i:8970566 original size:21 final size:23
Alignment explanation
Indices: 8970502--8970566 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
8970492 ATTAAGGAGA
*
8970502 ATTAATAATATATTTATATTTTGT
1 ATTAATAATATATTTA-ATTTGGT
*
8970526 ATTAATTATTATAATTTTAA-TTGGT
1 ATTAA-TAATAT-A-TTTAATTTGGT
8970551 A-TAATAATATATTTAA
1 ATTAATAATATATTTAA
8970567 CTTCAGATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
21 5 0.14
22 1 0.03
23 5 0.14
24 8 0.23
25 10 0.29
26 2 0.06
27 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (23 bp):
ATTAATAATATATTTAATTTGGT
Found at i:8983131 original size:3 final size:3
Alignment explanation
Indices: 8983116--8983158 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
8983106 CCATTTTTCC
* * *
8983116 TCT TCT CCT TCT TCT TCT TCT CTCT TCT TCT TTT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT TCT TCT TCT
8983159 CTAACCTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:8983141 original size:22 final size:22
Alignment explanation
Indices: 8983115--8983160 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8983105 TCCATTTTTC
8983115 CTCTTCTCCTTCTTCTTCTTCT
1 CTCTTCTCCTTCTTCTTCTTCT
* * *
8983137 CTCTTCTTCTTTTTCTTTTTCT
1 CTCTTCTCCTTCTTCTTCTTCT
8983159 CT
1 CT
8983161 AACCTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (22 bp):
CTCTTCTCCTTCTTCTTCTTCT
Found at i:8984253 original size:2 final size:2
Alignment explanation
Indices: 8984246--8984272 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8984236 ATTAAAAATA
8984246 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8984273 AAACAACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8986380 original size:95 final size:97
Alignment explanation
Indices: 8986258--8986498 Score: 303
Period size: 95 Copynumber: 2.5 Consensus size: 97
8986248 GGTTTTTAAA
* ** *
8986258 TTTTAGGG-TTTTAAGAAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATT
1 TTTTAGGGTTTTTAAG-AAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATT
*
8986322 ACT-AATTTT-AAAAATTAGATTATGG-TTTAGTG
65 A-TAAATTTTAAAAAATTAGATTA-GGATTTAGGG
* * *
8986354 -TTTATGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTTAGGGTTTTTAAGAAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
8986418 TAAATTTTAAAAAAATTAGATTAGGATTTTAGGG
66 TAAATTTT-AAAAAATTAGATTAGGA-TTTAGGG
* * *
8986452 TTTTAGGGTATTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAGGGTTTTTAAGAAAAAAATTAAATAAATTAGGGTTTAGGGTT
8986499 TAGGATAACT
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
94 1 0.01
95 55 0.44
96 9 0.07
97 13 0.10
98 6 0.05
99 41 0.33
ACGTcount: A:0.40, C:0.01, G:0.18, T:0.41
Consensus pattern (97 bp):
TTTTAGGGTTTTTAAGAAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTAAAAAATTAGATTAGGATTTAGGG
Found at i:8986760 original size:126 final size:126
Alignment explanation
Indices: 8986543--8987068 Score: 802
Period size: 126 Copynumber: 4.2 Consensus size: 126
8986533 AAAAGCTTCT
* * * **
8986543 ACGTGAACGTTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTATGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
8986608 ATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
8986669 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
8986734 ATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
8986795 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGATGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
8986860 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCTC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * **
8986921 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * * *
8986986 ATAGTGTCAAAAATGCTTCAAGCAAGATGCATTTTTAGCAAAAGTACTGAAAGAAACTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
8987047 ATGTGGACGTTCTTTTGCTACA
1 ACGTGGACGCTCTTTTGCTACA
8987069 ATGGTTTCTG
Statistics
Matches: 367, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
125 2 0.01
126 363 0.99
127 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:8989484 original size:20 final size:20
Alignment explanation
Indices: 8989455--8989496 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8989445 GAGAGCCATA
* *
8989455 TTTTCATTTAGCGGCAGTAT
1 TTTTCATTTAGCAGCACTAT
*
8989475 TTTTCGTTTAGCAGCACTAT
1 TTTTCATTTAGCAGCACTAT
8989495 TT
1 TT
8989497 GTTTGACGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTTCATTTAGCAGCACTAT
Found at i:8989596 original size:16 final size:16
Alignment explanation
Indices: 8989575--8989606 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8989565 TTTTTATTTT
*
8989575 AAAAAATAAATTTAGA
1 AAAAAATAAAATTAGA
8989591 AAAAAATAAAATTAGA
1 AAAAAATAAAATTAGA
8989607 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAAAATAAAATTAGA
Found at i:8989674 original size:11 final size:11
Alignment explanation
Indices: 8989635--8989686 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
8989625 TAACGAGAGT
*
8989635 TTTGAGAGGAA
1 TTTGAGAGAAA
* *
8989646 TTTAAGATAAA
1 TTTGAGAGAAA
8989657 TTTGAGAG--A
1 TTTGAGAGAAA
8989666 TTTGAGAGAAA
1 TTTGAGAGAAA
8989677 TTTGAGAGAA
1 TTTGAGAGAA
8989687 TATTGAAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 9 0.26
11 25 0.74
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:8989677 original size:20 final size:20
Alignment explanation
Indices: 8989635--8989685 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8989625 TAACGAGAGT
*
8989635 TTTGAGAGGAATTTAAGATAAA
1 TTTGAGA-G-ATTTAAGAGAAA
*
8989657 TTTGAGAGATTTGAGAGAAA
1 TTTGAGAGATTTAAGAGAAA
8989677 TTTGAGAGA
1 TTTGAGAGA
8989686 ATATTGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 19 0.70
21 1 0.04
22 7 0.26
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.31
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAGAAA
Found at i:8989698 original size:31 final size:31
Alignment explanation
Indices: 8989635--8989698 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
8989625 TAACGAGAGT
* * *
8989635 TTTGAGAGGAATTTAAGATAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
*
8989666 TTTGAGAGAAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAAAT-TTGAAAGA
8989697 TT
1 TT
8989699 GAAGATTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 3 0.11
31 25 0.89
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:8992897 original size:39 final size:38
Alignment explanation
Indices: 8992843--8992978 Score: 177
Period size: 39 Copynumber: 3.6 Consensus size: 38
8992833 CATGTTTTTA
*
8992843 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTG-TTATATG
*
8992882 AGTATTGTGATATATGTTTAAATGTTATGTG--ATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGTTATATG
* *
8992918 AGTATTGCGATATATGCTTAAATTTTATGTGGTTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGT-GTTATATG
* * *
8992957 TGTAATGTGATACATGCTTAAA
1 AGTATTGTGATATATGCTTAAA
8992979 ACTGAATATG
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
36 32 0.38
37 1 0.01
39 52 0.61
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (38 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGTTATATG
Found at i:8994612 original size:10 final size:10
Alignment explanation
Indices: 8994597--8994656 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
8994587 TAATTTTAGG
8994597 ATTTAT-TTT
1 ATTTATCTTT
8994606 CATTTATCTTT
1 -ATTTATCTTT
*
8994617 ATTTATCATT
1 ATTTATCTTT
* *
8994627 AATTATGTTT
1 ATTTATCTTT
8994637 ATTTAT-TTGT
1 ATTTATCTT-T
8994647 ATTTATCTTT
1 ATTTATCTTT
8994657 GAGAATTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
9 2 0.05
10 35 0.83
11 5 0.12
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:8996131 original size:19 final size:20
Alignment explanation
Indices: 8996093--8996141 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
8996083 AGATAATCAC
*
8996093 TTTAATATTAAATTTATTAA
1 TTTAATATTAAATCTATTAA
8996113 TTTAATATTAAA-CTATTAA
1 TTTAATATTAAATCTATTAA
**
8996132 AATAATATTA
1 TTTAATATTA
8996142 TATTTGGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTAATATTAAATCTATTAA
Found at i:8997701 original size:16 final size:16
Alignment explanation
Indices: 8997680--8997710 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8997670 CTATGCATAC
8997680 AAAATACAAAAGACAG
1 AAAATACAAAAGACAG
8997696 AAAATACAAAAGACA
1 AAAATACAAAAGACA
8997711 TAATAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.13, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:8999928 original size:27 final size:25
Alignment explanation
Indices: 8999890--8999953 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
8999880 CCCGACCAAT
*
8999890 AGCTCGTGTGAGTAGGCCCATATTCAC
1 AGCTCGTGTGAG--GACCCATATTCAC
* **
8999917 AGCTCATGTGAGGACTTATATTCAC
1 AGCTCGTGTGAGGACCCATATTCAC
8999942 AGCTCGTGTGAG
1 AGCTCGTGTGAG
8999954 CAACTCTATC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 21 0.66
27 11 0.34
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (25 bp):
AGCTCGTGTGAGGACCCATATTCAC
Found at i:9005220 original size:21 final size:21
Alignment explanation
Indices: 9005196--9005250 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
9005186 TCTTTTGAGC
* *
9005196 TTCAGTTTAACCCTAATGGGT
1 TTCAGTTTAACCCTAACGAGT
* * *
9005217 TTCAGTTCAACTCTTACGAGT
1 TTCAGTTTAACCCTAACGAGT
9005238 TTCAGTTTAACCC
1 TTCAGTTTAACCC
9005251 ACCTGGGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (21 bp):
TTCAGTTTAACCCTAACGAGT
Found at i:9005242 original size:42 final size:42
Alignment explanation
Indices: 9005137--9005278 Score: 135
Period size: 42 Copynumber: 3.4 Consensus size: 42
9005127 CATGAGCTTT
* * * **
9005137 AGTT-AACTCATATGAGTTTCAGATTAACGCTTTTGGGTTTC
1 AGTTCAACTCTTATGAGTTTCAGTTTAACCCTAATGGGTTTC
* ** * *
9005178 AGTTTAGTTCTTTTGAGCTTCAGTTTAACCCTAATGGGTTTC
1 AGTTCAACTCTTATGAGTTTCAGTTTAACCCTAATGGGTTTC
* * *
9005220 AGTTCAACTCTTACGAGTTTCAGTTTAACCC-ACCTGGGTTTT
1 AGTTCAACTCTTATGAGTTTCAGTTTAACCCTA-ATGGGTTTC
*
9005262 TGTTCAACTCTTATGAG
1 AGTTCAACTCTTATGAG
9005279 CTTCTGTTCA
Statistics
Matches: 80, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
41 5 0.06
42 75 0.94
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (42 bp):
AGTTCAACTCTTATGAGTTTCAGTTTAACCCTAATGGGTTTC
Found at i:9007009 original size:10 final size:11
Alignment explanation
Indices: 9006961--9007013 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
9006951 ATATATCATA
9006961 GCATATCATGT
1 GCATATCATGT
*
9006972 GCATATCAT-A
1 GCATATCATGT
*
9006982 ACATATCATGT
1 GCATATCATGT
9006993 GCATATCATGT
1 GCATATCATGT
*
9007004 -CCTATCATGT
1 GCATATCATGT
9007014 ATAACAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
10 17 0.47
11 19 0.53
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (11 bp):
GCATATCATGT
Found at i:9007013 original size:21 final size:21
Alignment explanation
Indices: 9006953--9007001 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
9006943 TATATTGAAT
*
9006953 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
9006974 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
9006995 ATATCAT
1 ATATCAT
9007002 GTCCTATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:9007187 original size:27 final size:27
Alignment explanation
Indices: 9007154--9007339 Score: 282
Period size: 27 Copynumber: 6.9 Consensus size: 27
9007144 GTTATCTCGA
*
9007154 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTATAGGGGTATTTCAG
* *
9007181 TATTTCTATCCTATAGGGGTATTTCAG
1 TAATTCTACCCTATAGGGGTATTTCAG
9007208 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTATAGGGGTATTTCAG
* * * *
9007235 TAACTCTACCCTACAAGGATATTTCAG
1 TAATTCTACCCTATAGGGGTATTTCAG
*
9007262 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTATAGGGGTATTTCAG
* *
9007289 TAACTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTATAGGGGTATTTCAG
9007316 TAATTCTACCCTATAGGGGTATTT
1 TAATTCTACCCTATAGGGGTATTT
9007340 TGGTAATTTT
Statistics
Matches: 144, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTATAGGGGTATTTCAG
Found at i:9007360 original size:27 final size:27
Alignment explanation
Indices: 9007330--9007512 Score: 217
Period size: 27 Copynumber: 6.8 Consensus size: 27
9007320 TCTACCCTAT
9007330 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
**
9007357 AGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** **
9007384 AAAGGTATTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * * *
9007410 TGAGGGTATTTTAGTAATTTCATAAATC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* *
9007438 AGGGGTA-TTTGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
9007464 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
9007491 AAGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
9007513 TAATTAAGGG
Statistics
Matches: 129, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 24 0.19
27 102 0.79
28 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:9007374 original size:54 final size:53
Alignment explanation
Indices: 9007154--9007366 Score: 221
Period size: 54 Copynumber: 3.9 Consensus size: 53
9007144 GTTATCTCGA
* * *
9007154 TAATTCTACCCTATAGGGGTATTTCGGT-ATTTCTATCCTATAGGGGTATTTCAG
1 TAATTCTACCCTATAGGGGTATTTTGGTAATTT-TA-CCAACAGGGGTATTTCAG
** * * * * *
9007208 TAATTCTACCCTATAGGGGTATTTCAGTAACTCTACCCTACAAGGATATTTCAG
1 TAATTCTACCCTATAGGGGTATTTTGGTAATTTTA-CCAACAGGGGTATTTCAG
* ** * * *
9007262 TAATTCTACCCTACAGGGGTATTTCAGTAACTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTATAGGGGTATTTTGGTAATTTTA-CCAACAGGGGTATTTCAG
*
9007316 TAATTCTACCCTATAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 TAATTCTACCCTATAGGGGTATTTTGGTAATTTTACCAA-CAGGGGTATTT
9007367 TGGTAATTTT
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.01
54 136 0.97
55 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (53 bp):
TAATTCTACCCTATAGGGGTATTTTGGTAATTTTACCAACAGGGGTATTTCAG
Found at i:9007391 original size:54 final size:54
Alignment explanation
Indices: 9007332--9007512 Score: 240
Period size: 54 Copynumber: 3.4 Consensus size: 54
9007322 TACCCTATAG
* *
9007332 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * * * * * *
9007386 AGGTATTTTGGTAATTTTAC-AAGTTGAGGGTATTTTAGTAATTTCATAAATCAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACCAA
* *
9007440 GGGTA-TTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
9007493 GGGTATTTTGGTAATTTTAC
1 GGGTATTTTGGTAATTTTAC
9007513 TAATTAAGGG
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
53 43 0.41
54 62 0.59
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:9007391 original size:81 final size:80
Alignment explanation
Indices: 9007306--9007455 Score: 178
Period size: 81 Copynumber: 1.9 Consensus size: 80
9007296 ACCCTACAGG
* * *
9007306 GGTATTTCAGTAATTCTACCCTA-TAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GGTATTTCAGTAATTCTA--CAAGTAGAGGGTATTTTAGTAATTTCACAAACCAGGGGTA-TTTG
9007369 GTAATTTTGTAAACCAAA
63 GTAATTTTGTAAACCAAA
** * * * *
9007387 GGTATTTTGGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTCATAAATCAGGGGTATTTGGTA
1 GGTATTTCAGTAATTCTACAAGTAGAGGGTATTTTAGTAATTTCACAAACCAGGGGTATTTGGTA
9007452 ATTT
66 ATTT
9007456 CACAAACTAG
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
79 2 0.03
80 13 0.22
81 43 0.74
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
GGTATTTCAGTAATTCTACAAGTAGAGGGTATTTTAGTAATTTCACAAACCAGGGGTATTTGGTA
ATTTTGTAAACCAAA
Found at i:9007482 original size:80 final size:81
Alignment explanation
Indices: 9007332--9007487 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 81
9007322 TACCCTATAG
* * ***
9007332 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTCACAAACCAAAGGTATTTTGG
9007397 TAATTTTACAAGTTGA
66 TAATTTTACAAGTTGA
* * * **
9007413 GGGTATTTTAGTAATTTCATAAATCAGGGGTA-TTTGGTAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTCACAAACCAAAGGTATTTTGG
9007477 TAATTTTACAA
66 TAATTTTACAA
9007488 ACCAAGGGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 37 0.57
81 28 0.43
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTCACAAACCAAAGGTATTTTGG
TAATTTTACAAGTTGA
Found at i:9007523 original size:107 final size:108
Alignment explanation
Indices: 9007330--9007524 Score: 313
Period size: 107 Copynumber: 1.8 Consensus size: 108
9007320 TCTACCCTAT
* **
9007330 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTT
1 AGGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
*
9007395 GGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTCATAAATC
66 GGTAATTTTACAAGTTAAGGGTATTTTAGTAATTTCATAAATC
* *
9007438 AGGGGTA-TTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
9007502 GGTAATTTTACTAA-TTAAGGGTA
66 GGTAATTTTAC-AAGTTAAGGGTA
9007525 AAACGATAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 71 0.89
108 9 0.11
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (108 bp):
AGGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
GGTAATTTTACAAGTTAAGGGTATTTTAGTAATTTCATAAATC
Found at i:9007535 original size:107 final size:107
Alignment explanation
Indices: 9007330--9007563 Score: 287
Period size: 107 Copynumber: 2.2 Consensus size: 107
9007320 TCTACCCTAT
* * **
9007330 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTT
1 AGGGGTACTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
* **
9007395 GGTAATTTTACAAGTTGAGGGTATTTTAGTAATT-TCATAAATC
66 GGTAATTTTACAAGTTAAGGGTA-TAAAGTAATTCT-ATAAATC
* *
9007438 AGGGGTA-TTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTACTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
*
9007502 GGTAATTTTACTAA-TTAAGGGTA-AAACGATAATTCTGTAAATC
66 GGTAATTTTAC-AAGTTAAGGGTATAAA-G-TAATTCTATAAATC
* *
9007545 GGGGGTACTTTTGTAATTT
1 AGGGGTACTTTGGTAATTT
9007564 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
105 1 0.01
106 1 0.01
107 88 0.80
108 20 0.18
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (107 bp):
AGGGGTACTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
GGTAATTTTACAAGTTAAGGGTATAAAGTAATTCTATAAATC
Found at i:9013885 original size:18 final size:18
Alignment explanation
Indices: 9013862--9013898 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9013852 ATTTGGTTAA
9013862 TCGATCGATTAACCGAAT
1 TCGATCGATTAACCGAAT
*
9013880 TCGATCGTTTAACCGAAT
1 TCGATCGATTAACCGAAT
9013898 T
1 T
9013899 AATTCAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (18 bp):
TCGATCGATTAACCGAAT
Found at i:9017472 original size:8 final size:8
Alignment explanation
Indices: 9017455--9017488 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
9017445 ATTATTATCA
*
9017455 ACATAAAT
1 ACATATAT
9017463 ACATATAT
1 ACATATAT
9017471 ACATATAT
1 ACATATAT
*
9017479 ATATATAT
1 ACATATAT
9017487 AC
1 AC
9017489 GTGCGTGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (8 bp):
ACATATAT
Found at i:9024828 original size:21 final size:22
Alignment explanation
Indices: 9024791--9024838 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
9024781 ATGTTGACCG
9024791 GCATTGACTAATAATTGATC-A
1 GCATTGACTAATAATTGATCGA
* *
9024812 GCATTGA-TCAATCATTGGTCGA
1 GCATTGACT-AATAATTGATCGA
9024834 GCATT
1 GCATT
9024839 AGTTGATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (22 bp):
GCATTGACTAATAATTGATCGA
Found at i:9029354 original size:15 final size:16
Alignment explanation
Indices: 9029332--9029366 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
9029322 GTAAAGGGAC
*
9029332 ATTTTTTTTAAGGTAA
1 ATTTTTTTTAAGATAA
9029348 ATTTTTTTTAAGATAA
1 ATTTTTTTTAAGATAA
9029364 ATT
1 ATT
9029367 ATAATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (16 bp):
ATTTTTTTTAAGATAA
Found at i:9029810 original size:37 final size:36
Alignment explanation
Indices: 9029756--9029828 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 36
9029746 ATTTAATTAA
9029756 AATTCTTTTAATCAAATTTAAATAACTAGAAAATAT
1 AATTCTTTTAATCAAATTTAAATAACTAGAAAATAT
*
9029792 AATTTTTTTAAATCAAATTTAAATAACTAGAAAATAT
1 AATTCTTTT-AATCAAATTTAAATAACTAGAAAATAT
9029829 TGATTGTTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 8 0.23
37 27 0.77
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.40
Consensus pattern (36 bp):
AATTCTTTTAATCAAATTTAAATAACTAGAAAATAT
Found at i:9032432 original size:36 final size:36
Alignment explanation
Indices: 9032387--9032463 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
9032377 AGTCATTGAT
*
9032387 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
9032423 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
9032459 TGATT
1 CGATT
9032464 GTGTAGCTCC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:9033093 original size:36 final size:36
Alignment explanation
Indices: 9033048--9033124 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
9033038 AGTCATTGAT
*
9033048 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
*
9033084 CGATTAAGTAGATATGAACATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
9033120 TGATT
1 CGATT
9033125 GTGTAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:9033455 original size:660 final size:660
Alignment explanation
Indices: 9032178--9035493 Score: 5933
Period size: 660 Copynumber: 5.0 Consensus size: 660
9032168 TAGCTGTTTA
*
9032178 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGTTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
9032243 TGTTTTTGATGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGATTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
9032308 AGTTATCTGACAGTTGATTGATTGGAGAGACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9032373 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* *
9032438 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCCGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGC-TGTTATTAAGTAACGGATTGAG
*
9032503 TAGTTCCAAGCGTCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
325 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
* *
9032568 GTGGTAGTAATTGACGGATTAAGTAGTTATGAGCATGTGACCATGCTTGAGCTACTATCCTTGGA
390 GTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
* * *
9032633 CTATCAGTAGTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATGACTGTTTACC
455 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
*
9032698 GATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTCTCTTTCTCATTTTGTTCT
520 GATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
9032763 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
585 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
9032828 TTAGTAATTAT
650 TTAGTAATTAT
9032839 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9032904 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAAAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
9032969 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9033034 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
9033099 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
261 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
9033164 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* *
9033229 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACCATCTTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
* *
9033294 TATCAGTACTTGTTATAGTTTCTCATGGAACTGGTTAAACGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
*
9033359 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATTTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
9033424 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
9033489 TAGTAATTAT
651 TAGTAATTAT
*
9033499 TGGAACTGGTTAAACGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
9033564 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
9033629 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9033694 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
9033759 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
261 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
* *
9033824 AGTTCCAAGCGCCTTTTAGAAATTAATGGTTAAGTACAGAGCACGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* * *
9033889 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCAAGTGACAACGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
9033954 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
9034019 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
9034084 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
9034149 TAGTAATTAT
651 TAGTAATTAT
* *
9034159 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCTGAAAGCTCGGGATGAATAAT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9034224 TGTTTTTGATGTGCACATGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
9034289 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAACTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
9034354 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* * *
9034419 GAGCATGTGCTTGTAATCAACTGATTGTGCAGCTCTGAGCGTTGTTATTAAGTAACGGATTGAGT
261 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
*
9034484 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCATGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
*
9034549 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCACGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
*
9034614 TATCAGTACTTGTTATAGTTTCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
9034679 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
*
9034744 TCCATATGCACTTCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
9034809 TAGTAATTAT
651 TAGTAATTAT
*
9034819 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGACAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9034884 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTTCTTTCCAATTTGCACCGCTCAGAGTAC
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTG-TTCTTTCCAATATGCACCGCTCAGAGTAC
9034949 TAGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCT
130 TAGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCT
* *
9035014 TTGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAAACGATTAAGTAGGTA
195 TTGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATA
* * *
9035079 TGAACACGTGCTTGTAGTCAACTGATTATGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAG
260 TGAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAG
* * * *
9035144 TAGTTCCAAGCACCTTTTAGAAATTAATGGTCAAGTACTGATCACGTGTTAGCAATTAACAGTTT
325 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGC-----A-A--TT
*
9035209 GAGTAGTTCAGATCACGTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACATGACCATGCTTG
382 -A--A---C--ATCACGTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTG
* *
9035274 AGCTACTATCCTTGAACTATCAGTACTTG-T-TAGTTGCTCATGGAACTGGTTAAATGTTAGAGC
439 AGCTACTATCCTTGGACTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGC
* * *
9035337 ATAATAACTGTTTACTGATCCAGAAAGTTCGGGATGCATACTCTTGTTTGTCGTGCATGTGTTTC
504 ATAATAACTGTTTACTGATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTC
*
9035402 TTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGATAAACTGTACTAGTTCACTGAC----GAT
569 TTTCTCATTTTGTTCTTTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGAT
*
9035463 TGATTGGTGAAACATGTTAGTAATTAT
634 TGATTGGTGAAACTTGTTAGTAATTAT
9035490 TGGA
1 TGGA
9035494 GGGTAGTTTT
Statistics
Matches: 2562, Mismatches: 76, Indels: 24
0.96 0.03 0.01
Matches are distributed among these distances:
660 1735 0.68
661 557 0.22
666 1 0.00
667 1 0.00
669 2 0.00
670 1 0.00
671 33 0.01
672 1 0.00
675 150 0.06
676 1 0.00
677 80 0.03
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (660 bp):
TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
TAGTAATTAT
Found at i:9033753 original size:36 final size:36
Alignment explanation
Indices: 9033708--9033784 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
9033698 AGTCATTGAT
*
9033708 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
*
9033744 CGATTAAGTAGATATGAACATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
9033780 TGATT
1 CGATT
9033785 GTGTAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:9034413 original size:36 final size:36
Alignment explanation
Indices: 9034368--9034444 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
9034358 AGTCATTGAT
9034368 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGACCACGTGCTT-GTAATCAAC
* *
9034404 CGATTAAGTAGATATGAGCATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGACCACGTGCTTGTAATCAAC
*
9034440 TGATT
1 CGATT
9034445 GTGCAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGACCACGTGCTTGTAATCAAC
Found at i:9034973 original size:180 final size:176
Alignment explanation
Indices: 9034639--9034998 Score: 478
Period size: 180 Copynumber: 2.0 Consensus size: 176
9034629 TAGTTTCTCA
* * * * *
9034639 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTGATCCGGAAAGTTCGGGATGCATGCT
1 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* **
9034704 TTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACTTCTCAGATAAACT
66 TTTGTTTGTCGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACCGCTCAG---AAC-
* *
9034769 GTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGTTAGTAATTAT
127 GTACTAGTTCACTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
* * *
9034819 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGACAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
9034884 TGTT-TTTGAT-GTGCACGTGTTTCTTTCTCATTTTGTTTCTTTCCAATTTGCACCGCTCAG-A-
66 T-TTGTTTG-TCGTGCACGTGTTTCTTTCTCATTTTG-TTCTTTCC-ATATGCACCGCTCAGAAC
9034945 GTACTAGTT-ATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
127 GTACTAGTTCA-CTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
9034995 TGGA
1 TGGA
9034999 TAGTAGTTAT
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
175 1 0.01
176 50 0.31
178 1 0.01
180 86 0.53
181 11 0.07
182 12 0.07
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (176 bp):
TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TTTGTTTGTCGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGAACGTAC
TAGTTCACTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
Found at i:9035612 original size:36 final size:35
Alignment explanation
Indices: 9035560--9035677 Score: 98
Period size: 36 Copynumber: 3.4 Consensus size: 35
9035550 TCTAATCAAC
* * *
9035560 TGATTGTGTAGCTCTGAGCACATGTTAGTAATTAA
1 TGATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
* * *
9035595 TGGATTGAGTAGTTCTGAGCACTTTTTTGAAATTAA
1 T-GATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
* * *
9035631 TGATCGAGTA--T-TGAGCACGTGTTAGCAATTAA
1 TGATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
* *
9035663 CAGTTTGAGTAGTTC
1 -TGATTGAGTAGTTC
9035678 CGATCATGTG
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
32 17 0.27
33 8 0.12
35 10 0.16
36 29 0.45
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (35 bp):
TGATTGAGTAGTTCTGAGCACATGTTAGAAATTAA
Found at i:9039468 original size:21 final size:20
Alignment explanation
Indices: 9039444--9039597 Score: 110
Period size: 21 Copynumber: 7.3 Consensus size: 20
9039434 TTACTTTCTA
9039444 TTTAGCTCTTATGAGCTTTTG
1 TTTAGCTCTTATGAG-TTTTG
* * * *
9039465 TTTAACTCATACGAATTTTTG
1 TTTAGCTCTTATG-AGTTTTG
* * * *
9039486 TTCAGCACTTACGAGCTTCTG
1 TTTAGCTCTTATGAG-TTTTG
* *
9039507 TTCAACTCTTATGAGTTTTGG
1 TTTAGCTCTTATGAGTTTT-G
* * *
9039528 TTTAGCTCTTACGAGCTTCTA
1 TTTAGCTCTTATGAG-TTTTG
* *
9039549 TTCAACTCTTATGAGTTTCTG
1 TTTAGCTCTTATGAGTTT-TG
9039570 TTTAGCTCTTATGAGTTTCTG
1 TTTAGCTCTTATGAGTTT-TG
9039591 TTTAGCT
1 TTTAGCT
9039598 TTCGAGTCGA
Statistics
Matches: 102, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
20 6 0.06
21 92 0.90
22 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (20 bp):
TTTAGCTCTTATGAGTTTTG
Found at i:9039557 original size:42 final size:41
Alignment explanation
Indices: 9039444--9039592 Score: 172
Period size: 42 Copynumber: 3.6 Consensus size: 41
9039434 TTACTTTCTA
* * * * * *
9039444 TTTAGCTCTTATGAGCTTTTGTTTAACTCATACGAATTTTTG
1 TTTAGCTCTTACGAGCTTCTGTTCAACTCTTATG-AGTTTTG
* *
9039486 TTCAGCACTTACGAGCTTCTGTTCAACTCTTATGAGTTTTGG
1 TTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTT-G
*
9039528 TTTAGCTCTTACGAGCTTCTATTCAACTCTTATGAGTTTCTG
1 TTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTT-TG
* *
9039570 TTTAGCTCTTATGAGTTTCTGTT
1 TTTAGCTCTTACGAGCTTCTGTT
9039593 TAGCTTTCGA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 5 0.05
42 85 0.93
43 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (41 bp):
TTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTTG
Found at i:9039569 original size:63 final size:62
Alignment explanation
Indices: 9039449--9039597 Score: 163
Period size: 63 Copynumber: 2.4 Consensus size: 62
9039439 TTCTATTTAG
* * * * *
9039449 CTCTTATGAGCTTTTGTTTAACTCATACGAATTTTTGTTCAGCACTTACGAGCTTCTGTTCAA
1 CTCTTATGAG-TTTTGTTTAGCTCATACGAACTTCTATTCAACACTTACGAGCTTCTGTTCAA
* * * * * * *
9039512 CTCTTATGAGTTTTGGTTTAGCTCTTACGAGCTTCTATTCAACTCTTATGAGTTTCTGTTTAG
1 CTCTTATGAGTTTT-GTTTAGCTCATACGAACTTCTATTCAACACTTACGAGCTTCTGTTCAA
9039575 CTCTTATGAGTTTCTGTTTAGCT
1 CTCTTATGAGTTT-TGTTTAGCT
9039598 TTCGAGTCGA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
62 4 0.06
63 67 0.93
64 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (62 bp):
CTCTTATGAGTTTTGTTTAGCTCATACGAACTTCTATTCAACACTTACGAGCTTCTGTTCAA
Done.