Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 311 of 373
Found at i:105102697 original size:41 final size:41
Alignment explanation
Indices: 105102640--105102718 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
105102630 TAACAAATAG
*
105102640 AATGCAACTTTTGCATTTTACGCGATTTAGTCATTTTTTAA
1 AATGCAACTATTGCATTTTACGCGATTTAGTCATTTTTTAA
105102681 AATGCAACTATTGCATTTTACGCGATTTAGTCATTTTT
1 AATGCAACTATTGCATTTTACGCGATTTAGTCATTTTT
105102719 CTCAAATTGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.46
Consensus pattern (41 bp):
AATGCAACTATTGCATTTTACGCGATTTAGTCATTTTTTAA
Found at i:105104794 original size:23 final size:23
Alignment explanation
Indices: 105104768--105104821 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
105104758 TATTGCATCA
*
105104768 CATATCATATACC-AAAATCAAAC
1 CATATCATAT-CCAAAAACCAAAC
*
105104791 CATAATCATATCCAAAAACCAAGC
1 CAT-ATCATATCCAAAAACCAAAC
105104815 CATATCA
1 CATATCA
105104822 CATGGCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.50, C:0.28, G:0.02, T:0.20
Consensus pattern (23 bp):
CATATCATATCCAAAAACCAAAC
Found at i:105108605 original size:40 final size:40
Alignment explanation
Indices: 105108561--105108708 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
105108551 TCGATATATT
*
105108561 GTATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAAA
1 GTATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAAA
* *
105108601 GTATATCTGGGTTAAATCCCGCAGGCTTCATACTGGTAAA
1 GTATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAAA
105108641 GTATATCCGGGTTAAATCCCGCAGGCTT-AGTGCTGGT--A
1 GTATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAAA
* * *
105108679 CTATATCCGGGCCTAAAGTCCCGTAGGCTT
1 GTATATCCGGG-TTAAA-TCCCGCAGGCTT
105108709 TGTGCTAGTA
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
38 11 0.11
39 5 0.05
40 81 0.84
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (40 bp):
GTATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAAA
Found at i:105116976 original size:36 final size:37
Alignment explanation
Indices: 105116929--105116999 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
105116919 GCAAAGCCCC
105116929 AGTTAAGTCCAATTC-AAAAAAGGCCACTTTTGAGCA
1 AGTTAAGTCCAATTCGAAAAAAGGCCACTTTTGAGCA
* *
105116965 AGTTAAGTCCAATTCGGAAAAAGGGCACTTTTGAG
1 AGTTAAGTCCAATTCGAAAAAAGGCCACTTTTGAG
105117000 GGCTTCTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 15 0.47
37 17 0.53
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (37 bp):
AGTTAAGTCCAATTCGAAAAAAGGCCACTTTTGAGCA
Found at i:105118468 original size:28 final size:29
Alignment explanation
Indices: 105118423--105118478 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 29
105118413 TTCTTAATAC
*
105118423 ATATAATCATTCAAAATT-ATTCAAAAGA
1 ATATAATCAATCAAAATTAATTCAAAAGA
105118451 ATATAATCAAT-AATAATTCAATTCAAAA
1 ATATAATCAATCAA-AATT-AATTCAAAA
105118479 TACATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.08
28 14 0.58
30 8 0.33
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (29 bp):
ATATAATCAATCAAAATTAATTCAAAAGA
Found at i:105122523 original size:26 final size:26
Alignment explanation
Indices: 105122492--105122599 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
105122482 TGAAATGCCC
105122492 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
105122518 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
105122544 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
105122570 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
105122596 ATCA
1 ATCA
105122600 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 71 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:105125402 original size:23 final size:23
Alignment explanation
Indices: 105125376--105125464 Score: 97
Period size: 23 Copynumber: 3.9 Consensus size: 23
105125366 AACATCAGGC
105125376 ATGAACAATGAAGATTCTCTGCG
1 ATGAACAATGAAGATTCTCTGCG
** * * *
105125399 ATGAACTGTGAAAATTTTCTGCA
1 ATGAACAATGAAGATTCTCTGCG
* *
105125422 ATGAACAATGAAGATTCTTTACG
1 ATGAACAATGAAGATTCTCTGCG
* *
105125445 ATTAACATTGAAGATTCTCT
1 ATGAACAATGAAGATTCTCT
105125465 AAAAAAATAC
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (23 bp):
ATGAACAATGAAGATTCTCTGCG
Found at i:105125784 original size:16 final size:16
Alignment explanation
Indices: 105125765--105125861 Score: 72
Period size: 16 Copynumber: 6.1 Consensus size: 16
105125755 AACACAAATC
105125765 AAATTTAAGTTTTCAA
1 AAATTTAAGTTTTCAA
*
105125781 AAATTT-ATTTTTC-A
1 AAATTTAAGTTTTCAA
* *
105125795 AAATTTAATTTTTGAA
1 AAATTTAAGTTTTCAA
** * *
105125811 AAATTTTTGCTTTAAA
1 AAATTTAAGTTTTCAA
* *
105125827 AAATTTCTAGCTTTCAA
1 AAATTT-AAGTTTTCAA
* *
105125844 AGATTTAAGTTTTTAA
1 AAATTTAAGTTTTCAA
105125860 AA
1 AA
105125862 CAAATCAAGT
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
14 7 0.11
15 12 0.19
16 32 0.50
17 13 0.20
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (16 bp):
AAATTTAAGTTTTCAA
Found at i:105128016 original size:20 final size:20
Alignment explanation
Indices: 105127991--105128054 Score: 128
Period size: 20 Copynumber: 3.2 Consensus size: 20
105127981 TTTAAACCTT
105127991 ATGAAATTCCAAAACACAAA
1 ATGAAATTCCAAAACACAAA
105128011 ATGAAATTCCAAAACACAAA
1 ATGAAATTCCAAAACACAAA
105128031 ATGAAATTCCAAAACACAAA
1 ATGAAATTCCAAAACACAAA
105128051 ATGA
1 ATGA
105128055 TTTATTGACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.59, C:0.19, G:0.06, T:0.16
Consensus pattern (20 bp):
ATGAAATTCCAAAACACAAA
Found at i:105129040 original size:52 final size:52
Alignment explanation
Indices: 105128961--105129063 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
105128951 CTTGGAAAAT
105128961 ACGATTGTTTACGATACTATTTATGTATAGTAGTTCACATATATAGTAGTTG
1 ACGATTGTTTACGATACTATTTATGTATAGTAGTTCACATATATAGTAGTTG
*
105129013 ACGATTGTTTACGATACTATTTTTGTATAGTAGTTCACATATATAGTAGTT
1 ACGATTGTTTACGATACTATTTATGTATAGTAGTTCACATATATAGTAGTT
105129064 CACATATATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.44
Consensus pattern (52 bp):
ACGATTGTTTACGATACTATTTATGTATAGTAGTTCACATATATAGTAGTTG
Found at i:105129059 original size:16 final size:16
Alignment explanation
Indices: 105129038--105129079 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
105129028 ACTATTTTTG
105129038 TATAGTAGTTCACATA
1 TATAGTAGTTCACATA
105129054 TATAGTAGTTCACATA
1 TATAGTAGTTCACATA
105129070 TATAGTAGTT
1 TATAGTAGTT
105129080 ACGATCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (16 bp):
TATAGTAGTTCACATA
Found at i:105130814 original size:46 final size:47
Alignment explanation
Indices: 105130719--105130893 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 47
105130709 GTTATTGTTG
* * * * * *
105130719 GCTAGTGTAAGAAATGTTTGGGACATGCATCGGC-CAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATACGA-GACGATA
*
105130765 GCTAGTGTAAGACATGTCTGGGACATGCATAGGCAT-CGAGACG-TAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATACGAGACGAT-A
* * *
105130811 GCTAGTGTAAGACATGTCTAGGACATGCATCTGC-TACGAGATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATACGAGACGATA
*
105130857 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
105130894 CCTTACCCAT
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.01
46 84 0.79
47 15 0.14
48 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATACGAGACGATA
Found at i:105134204 original size:45 final size:45
Alignment explanation
Indices: 105134153--105134242 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
105134143 TGATGAAGAA
* *
105134153 GTTTCAACCCAAGAACTTCTATAGCAACAACATTCAATTGCATAT
1 GTTTCAACCCAAGAACTTCTACAACAACAACATTCAATTGCATAT
* *
105134198 GTTTCAACCCAAGAACTTCTACAACAATAAGATTCAATTGCATAT
1 GTTTCAACCCAAGAACTTCTACAACAACAACATTCAATTGCATAT
105134243 AGGAGGCCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (45 bp):
GTTTCAACCCAAGAACTTCTACAACAACAACATTCAATTGCATAT
Found at i:105137905 original size:6 final size:6
Alignment explanation
Indices: 105137887--105137946 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
105137877 AAGAAACATT
*
105137887 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
105137936 ATTAGA ATCAG
1 ATCAGA ATCAG
105137947 TACTAGGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 2 0.04
6 38 0.84
7 4 0.09
8 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:105137934 original size:31 final size:31
Alignment explanation
Indices: 105137896--105137974 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
105137886 TATCAGAACT
*
105137896 AGAATCAGAATCAGAATCAGAA-TCAGGTGAC
1 AGAATCAGAATCAGAATCAGAACT-AGGTAAC
* *
105137927 AGAATCAGAATTAGAATCAGTACTAGGTAAC
1 AGAATCAGAATCAGAATCAGAACTAGGTAAC
*
105137958 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
105137975 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 41 0.98
32 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAACTAGGTAAC
Found at i:105138241 original size:27 final size:26
Alignment explanation
Indices: 105138193--105138244 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
105138183 AGCGAGGTGC
*
105138193 TAGATATTGTGACGAAGTCACCAGAA
1 TAGATATTGTGACGAAGCCACCAGAA
* *
105138219 TAGATATATGTGGCGAGGCCACCAGA
1 TAGATAT-TGTGACGAAGCCACCAGA
105138245 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (26 bp):
TAGATATTGTGACGAAGCCACCAGAA
Found at i:105138519 original size:27 final size:27
Alignment explanation
Indices: 105138489--105138633 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
105138479 GGGGTAAAAT
* *
105138489 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
105138516 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
105138543 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
105138570 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
105138597 AGT-ATTTCTACCCTAAAAGGGTTTTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
105138624 GGTAATTTTA
1 GGTAATTTTA
105138634 TAAATCGAGG
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.03
27 97 0.93
28 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:105138699 original size:27 final size:27
Alignment explanation
Indices: 105138613--105138901 Score: 242
Period size: 27 Copynumber: 10.7 Consensus size: 27
105138603 TCTACCCTAA
*
105138613 AAGGGT-TTTTCGGTAATTTTATAAATC
1 AAGGGTATTTT-GGTAATTTTACAAATC
* *** * ** *
105138640 GAGGGTAAAATGGTAATTCTGTAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
105138667 AGGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAAATC
*** **
105138694 AAGGGTATTTCAATAATTTTACAGGTC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * *
105138721 GAGGGTATTTTAGTAATTTCACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * *
105138748 AGGGGTATTTTAGTAATTTCACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
105138775 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
105138802 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
105138829 AGGGGTATTTTGGTAATTTTATAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
*
105138855 AAAGGGTATTTTAGTAATTTTACAAA-C
1 -AAGGGTATTTTGGTAATTTTACAAATC
105138882 AAAGGGTATTTTGGTAATTT
1 -AAGGGTATTTTGGTAATTT
105138902 GGTAAACTAA
Statistics
Matches: 219, Mismatches: 41, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
26 1 0.00
27 217 0.99
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:105140872 original size:6 final size:6
Alignment explanation
Indices: 105140854--105140953 Score: 107
Period size: 6 Copynumber: 16.3 Consensus size: 6
105140844 AAGAAACATT
105140854 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
105140901 GTGACAGA ATCAGA ATCAGA ATCAGC ATCAGGTA A-CAGA ATCAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
105140952 AT
1 AT
105140954 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
5 4 0.05
6 67 0.84
7 7 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:105140912 original size:31 final size:31
Alignment explanation
Indices: 105140854--105140953 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
105140844 AAGAAACATT
105140854 ATCAGAA-CTAGAATCA-G-AATCAGAATCAGA
1 ATCAGAATC-AGAATCAGGTAA-CAGAATCAGA
*
105140884 ATCAGAATCAGAATCAGGTGACAGAATCAGA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
* *
105140915 ATCAGAATCAGCATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
105140946 ATCAGAAT
1 ATCAGAAT
105140954 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
30 14 0.22
31 48 0.76
32 1 0.02
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTAACAGAATCAGA
Found at i:105141121 original size:27 final size:26
Alignment explanation
Indices: 105141073--105141132 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
105141063 GCGAGGCTGC
*
105141073 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
105141100 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
105141126 CAAATAT
1 CAGATAT
105141133 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:105141219 original size:27 final size:26
Alignment explanation
Indices: 105141172--105141222 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
105141162 CGAGGCTGCT
*
105141172 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
105141198 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
105141223 TTGTAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:105141497 original size:27 final size:26
Alignment explanation
Indices: 105141471--105141600 Score: 125
Period size: 27 Copynumber: 4.8 Consensus size: 26
105141461 TAAAATGGTA
* *
105141471 ATTTTACCCCACAAGGGTATCTCGGT
1 ATTTTACCCTACAAGGGTATTTCGGT
* * **
105141497 AATTCTACCCTACAGGGGTATTTTAGT
1 -ATTTTACCCTACAAGGGTATTTCGGT
* *
105141524 CATTCTACCCTACAGGGGTATTTCGGT
1 -ATTTTACCCTACAAGGGTATTTCGGT
* * *
105141551 ATTTCTACCATATAAGGGTATTTCAGT
1 ATTT-TACCCTACAAGGGTATTTCGGT
105141578 ATTTCTACCCTACAAGGGTATTT
1 ATTT-TACCCTACAAGGGTATTT
105141601 TAGGAATTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.03
27 83 0.97
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (26 bp):
ATTTTACCCTACAAGGGTATTTCGGT
Found at i:105141599 original size:54 final size:55
Alignment explanation
Indices: 105141471--105141600 Score: 167
Period size: 54 Copynumber: 2.4 Consensus size: 55
105141461 TAAAATGGTA
* * * * *
105141471 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAGTC
* * *
105141525 A-TTCTACCCTACAGGGGTATTTCGGTATTTCTACCATATAAGGGTATTTCAGT-
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAGTC
105141578 ATTTCTACCCTACAAGGGTATTT
1 ATTTCTACCCTACAAGGGTATTT
105141601 TAGGAATTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.05
54 62 0.95
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (55 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAGTC
Found at i:105141650 original size:27 final size:27
Alignment explanation
Indices: 105141605--105141678 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
105141595 GTATTTTAGG
*
105141605 AATTTTGTAAATCGAGGGTAAAACGGT
1 AATTTTATAAATCGAGGGTAAAACGGT
***
105141632 AATTTTATAAATC-AGGGGTACTTCGGT
1 AATTTTATAAATCGA-GGGTAAAACGGT
* *
105141659 AATTTTACAAGTCGAGGGTA
1 AATTTTATAAATCGAGGGTA
105141679 TTTCAATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32
Consensus pattern (27 bp):
AATTTTATAAATCGAGGGTAAAACGGT
Found at i:105141913 original size:27 final size:27
Alignment explanation
Indices: 105141629--105141906 Score: 299
Period size: 27 Copynumber: 10.3 Consensus size: 27
105141619 AGGGTAAAAC
* * * *
105141629 GGTAATTTTATAAATCAGGGGTACTTC
1 GGTAATTTTACAAACCAGGGGTATTTT
** *
105141656 GGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTACAAACCAG-GGGTATTTT
** ***
105141683 AATAATTTTACAGGTC-GAGGGTATTTT
1 GGTAATTTTACAAACCAG-GGGTATTTT
** * * **
105141710 AATAATGTCACAAATTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
105141737 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
105141764 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
105141791 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
105141818 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
105141845 GGTAATTTTATAAACAAAGCGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
105141872 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
105141899 GGTAATTT
1 GGTAATTT
105141907 GGTAAACTAA
Statistics
Matches: 219, Mismatches: 30, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 217 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:105165688 original size:22 final size:23
Alignment explanation
Indices: 105165658--105165711 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
105165648 CTGAGGGGAA
*
105165658 TGGCGATTT-ACCGCATTTTTAC
1 TGGCAATTTGACCGCATTTTTAC
***
105165680 TGGCAATTTGTTTGCATTTTTAC
1 TGGCAATTTGACCGCATTTTTAC
*
105165703 TGGAAATTT
1 TGGCAATTT
105165712 TTTTGCATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (23 bp):
TGGCAATTTGACCGCATTTTTAC
Found at i:105165700 original size:23 final size:23
Alignment explanation
Indices: 105165670--105165719 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
105165660 GCGATTTACC
*
105165670 GCATTTTTACTGGCAATTTGTTT
1 GCATTTTTACTGGAAATTTGTTT
*
105165693 GCATTTTTACTGGAAATTTTTTT
1 GCATTTTTACTGGAAATTTGTTT
105165716 GCAT
1 GCAT
105165720 ATTGTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.16, T:0.52
Consensus pattern (23 bp):
GCATTTTTACTGGAAATTTGTTT
Found at i:105171960 original size:17 final size:16
Alignment explanation
Indices: 105171940--105171984 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
105171930 TATATAATGC
105171940 TATATAATATCTTATAG
1 TATATAATATCTT-TAG
*
105171957 TATATAATATATTTAG
1 TATATAATATCTTTAG
*
105171973 TTTATATATATC
1 TATATA-ATATC
105171985 AATGATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (16 bp):
TATATAATATCTTTAG
Found at i:105172079 original size:7 final size:7
Alignment explanation
Indices: 105172069--105172133 Score: 103
Period size: 7 Copynumber: 8.9 Consensus size: 7
105172059 ATAATATTAC
105172069 ATTATAT
1 ATTATAT
105172076 ATTATAT
1 ATTATAT
105172083 ATTACATAAT
1 ATT--AT-AT
105172093 ATTATAT
1 ATTATAT
105172100 ATTATAT
1 ATTATAT
105172107 ATTATAT
1 ATTATAT
105172114 ATTATAT
1 ATTATAT
105172121 ATTATAT
1 ATTATAT
105172128 ATTATA
1 ATTATA
105172134 CATATTATTG
Statistics
Matches: 55, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
7 46 0.84
8 2 0.04
9 2 0.04
10 5 0.09
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (7 bp):
ATTATAT
Found at i:105172080 original size:24 final size:23
Alignment explanation
Indices: 105172053--105172129 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 23
105172043 ATAATAATAG
*
105172053 TTATATATAATATTACATTATATA
1 TTATATAT-ATATTATATTATATA
* *
105172077 TTATATATTACATAATATTATATA
1 TTATATA-TATATTATATTATATA
105172101 TTATATAT-TA-TATATTATATA
1 TTATATATATATTATATTATATA
105172122 TTATATAT
1 TTATATAT
105172130 TATACATATT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 18 0.38
22 1 0.02
23 1 0.02
24 26 0.55
25 1 0.02
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (23 bp):
TTATATATATATTATATTATATA
Found at i:105172133 original size:19 final size:19
Alignment explanation
Indices: 105172053--105172124 Score: 89
Period size: 17 Copynumber: 3.9 Consensus size: 19
105172043 ATAATAATAG
105172053 TTATATA-TA-ATATTACA
1 TTATATATTATATATTACA
105172070 TTATATATTATATATTACA
1 TTATATATTATATATTACA
*
105172089 -TA-ATATTATATATTATATA
1 TTATATATTATATA-T-TACA
105172108 TTATATATTATATATTA
1 TTATATATTATATATTA
105172125 TATATTATAC
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
17 17 0.35
18 5 0.10
19 13 0.27
20 3 0.06
21 10 0.21
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATATATTATATATTACA
Found at i:105174244 original size:26 final size:26
Alignment explanation
Indices: 105174129--105174241 Score: 199
Period size: 26 Copynumber: 4.3 Consensus size: 26
105174119 TGGTACAAAT
105174129 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105174155 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105174181 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105174207 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105174233 TGATAATGG
1 TGATAATGG
105174242 TTTCATGTCT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105175720 original size:28 final size:27
Alignment explanation
Indices: 105175689--105175765 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
105175679 AAAAGCAGCT
* *
105175689 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTATG-ATGCA
*
105175717 AAATTACTATTATACCCCCTA-GGTGCA
1 AAATTACTATTATA-CCCCTATGATGCA
*
105175744 AAATTACCATTATACCCCTATG
1 AAATTACTATTATACCCCTATG
105175766 GTTACTTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
26 6 0.14
27 17 0.40
28 14 0.33
29 6 0.14
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTATTATACCCCTATGATGCA
Found at i:105175951 original size:54 final size:53
Alignment explanation
Indices: 105175869--105176009 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
105175859 AGGAAGCGTC
105175869 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTATT
* *
105175923 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTATT
* * *
105175977 CTGGTGGCTCTGTCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
105176010 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTATT
Found at i:105176005 original size:32 final size:27
Alignment explanation
Indices: 105175869--105176009 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
105175859 AGGAAGCGTC
*
105175869 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
105175896 CTGGTGGCTCTACCACATATATCT-ATT
1 CTGGTGGCTCTGCCACATATATCTGA-T
*
105175923 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
105175950 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
105175977 CTGGTGGCTCTGTCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
105176004 CTGGTG
1 CTGGTG
105176010 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:105176018 original size:27 final size:27
Alignment explanation
Indices: 105175869--105176027 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
105175859 AGGAAGCGTC
* *
105175869 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
** *
105175896 CTGGTGGCTCTACCACATATATCTAT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
* * *
105175923 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGTCAC-AATATCTGTAT
*
105175950 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
105175977 CTGGTGGCTCTGTCACAATATCTGTAT
1 CTGGTGGCTCTGTCACAATATCTGTAT
*
105176004 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GTCACAATATCTG
105176028 GCAGCCTCAC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGTCACAATATCTGTAT
Found at i:105182686 original size:17 final size:18
Alignment explanation
Indices: 105182653--105182686 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
105182643 GTATTAAAAT
*
105182653 TATTTTATAATAAATTAA
1 TATTTTATAAAAAATTAA
105182671 TATTTT-TAAAAAATTA
1 TATTTTATAAAAAATTA
105182687 TTTCAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTTTATAAAAAATTAA
Found at i:105189423 original size:2 final size:2
Alignment explanation
Indices: 105189410--105189446 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
105189400 ATGCAGAGTG
*
105189410 CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT -T CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
105189447 ATCCTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:105190804 original size:16 final size:16
Alignment explanation
Indices: 105190768--105190813 Score: 69
Period size: 15 Copynumber: 3.0 Consensus size: 16
105190758 CCTTTTAAAA
*
105190768 TAAAAATTTTATAATT
1 TAAAATTTTTATAATT
105190784 T-AAATTTTTATAATT
1 TAAAATTTTTATAATT
105190799 TAAAATTTTTA-AATT
1 TAAAATTTTTATAATT
105190814 AGTAATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 18 0.64
16 10 0.36
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAAAATTTTTATAATT
Found at i:105192141 original size:11 final size:11
Alignment explanation
Indices: 105192125--105192159 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
105192115 TAAAATCAAC
105192125 TAAAGTTAGAT
1 TAAAGTTAGAT
105192136 TAAAGTTAGAT
1 TAAAGTTAGAT
105192147 T-AAGTTA-AT
1 TAAAGTTAGAT
105192156 TAAA
1 TAAA
105192160 CCATGATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.13
10 8 0.35
11 12 0.52
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (11 bp):
TAAAGTTAGAT
Found at i:105193344 original size:30 final size:30
Alignment explanation
Indices: 105193310--105193387 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
105193300 AACATAAGTT
105193310 AGCTTGTGTGAGCAACTTTGATAAAATGAC
1 AGCTTGTGTGAGCAACTTTGATAAAATGAC
* * * *
105193340 AGCTTGTGTGAGGAACTCTGATATAATGTC
1 AGCTTGTGTGAGCAACTTTGATAAAATGAC
*
105193370 AGCTTGTGTAAGCAACTT
1 AGCTTGTGTGAGCAACTT
105193388 ATTCACCCGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (30 bp):
AGCTTGTGTGAGCAACTTTGATAAAATGAC
Found at i:105198471 original size:27 final size:27
Alignment explanation
Indices: 105198441--105198569 Score: 140
Period size: 27 Copynumber: 4.8 Consensus size: 27
105198431 ACCCCAGATA
105198441 GTAAAATTA-TCGAAATACCCTCGATTT
1 GTAAAATTACT-GAAATACCCTCGATTT
* *
105198468 GTAAAATTACCGAAATA-CCTCCGGTTT
1 GTAAAATTACTGAAATACCCT-CGATTT
* *
105198495 GTAAAATTACTGAAAT-GCCTCTAATTT
1 GTAAAATTACTGAAATACCCTC-GATTT
* *
105198522 GTAAAATTACTGAAATACCCTTG-TAAT
1 GTAAAATTACTGAAATACCCTCGAT-TT
105198549 GTAAAATTACTGAAATACCCT
1 GTAAAATTACTGAAATACCCT
105198570 TGTAGGGTAA
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.06
27 79 0.91
28 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCTCGATTT
Found at i:105199006 original size:27 final size:27
Alignment explanation
Indices: 105198957--105199060 Score: 77
Period size: 27 Copynumber: 3.9 Consensus size: 27
105198947 CCAACCTAAA
* *
105198957 TATGGCTTTGTG-CTAGTCGTATTTACC
1 TATGGCTATGTGCCTA-TCATATTTACC
*
105198984 TATGGCTATGTGCCTATCATATTTA-T
1 TATGGCTATGTGCCTATCATATTTACC
* * * * *
105199010 TGATGACTCTGTGTCGACCATATTTACC
1 T-ATGGCTATGTGCCTATCATATTTACC
* * *
105199038 CATGGCTGTGTGCCAATCATATT
1 TATGGCTATGTGCCTATCATATT
105199061 ACTGCTACTG
Statistics
Matches: 59, Mismatches: 15, Indels: 6
0.74 0.19 0.08
Matches are distributed among these distances:
26 1 0.02
27 55 0.93
28 3 0.05
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.40
Consensus pattern (27 bp):
TATGGCTATGTGCCTATCATATTTACC
Found at i:105201857 original size:27 final size:27
Alignment explanation
Indices: 105201827--105201925 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
105201817 CCCCAAACAG
*
105201827 TAAAATTACCGAAATTCCCACAGTTTA
1 TAAAATTACCGAAATACCCACAGTTTA
* * *
105201854 TAAAACTACCGAAATACCCTCAGTTTG
1 TAAAATTACCGAAATACCCACAGTTTA
** * *
105201881 TAAAATTACTAAAATACCTC-TAGTTTG
1 TAAAATTACCGAAATACC-CACAGTTTA
105201908 T-AAATTACCGAAATACCC
1 TAAAATTACCGAAATACCC
105201926 TTGTAGTGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
25 1 0.02
26 14 0.23
27 45 0.74
28 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCACAGTTTA
Found at i:105201912 original size:26 final size:26
Alignment explanation
Indices: 105201865--105201952 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
105201855 AAAACTACCG
105201865 AAATACCCTCAGTTTGTAAAATTACTA
1 AAATACCCT-AGTTTGTAAAATTACTA
**
105201892 AAATACCTCTAGTTTGT-AAATTACCG
1 AAATACC-CTAGTTTGTAAAATTACTA
* * *
105201918 AAATACCCTTGTAGTGTAAAATTACTT
1 AAATACCCTAGT-TTGTAAAATTACTA
105201945 AAATACCC
1 AAATACCC
105201953 CTGTAGGGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
25 4 0.08
26 17 0.33
27 29 0.56
28 2 0.04
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATACCCTAGTTTGTAAAATTACTA
Found at i:105201948 original size:27 final size:27
Alignment explanation
Indices: 105201879--105201971 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
105201869 ACCCTCAGTT
* *
105201879 TGTAAAATTACTAAAATACCTCTAGT-T
1 TGTAAAATTACTAAAATACC-CTTGTAG
**
105201906 TGT-AAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACTAAAATACCCTTGTAG
* *
105201932 TGTAAAATTACTTAAATACCCCTGTAG
1 TGTAAAATTACTAAAATACCCTTGTAG
* *
105201959 GGTAAAATGACTA
1 TGTAAAATTACTA
105201972 TTTTGCCCTT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.07
26 17 0.31
27 33 0.61
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCTTGTAG
Found at i:105201964 original size:53 final size:53
Alignment explanation
Indices: 105201860--105201964 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 53
105201850 TTTATAAAAC
* * **
105201860 TACCGAAATACCCTCAGTTTGTAAAATTACTAAAATACCTCTAGTTTGTAAAT
1 TACCGAAATACCCTCAGTGTGTAAAATTACTAAAATACCCCTAGTGGGTAAAT
* *
105201913 TACCGAAATACCCT-TGTAGTGTAAAATTACTTAAATACCCCT-GTAGGGTAAA
1 TACCGAAATACCCTCAGT-GTGTAAAATTACTAAAATACCCCTAGT-GGGTAAA
105201965 ATGACTATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
52 4 0.09
53 40 0.91
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.31
Consensus pattern (53 bp):
TACCGAAATACCCTCAGTGTGTAAAATTACTAAAATACCCCTAGTGGGTAAAT
Found at i:105203570 original size:16 final size:18
Alignment explanation
Indices: 105203535--105203571 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
105203525 TATTTATTAT
*
105203535 ATATATTATGTTAACTTA
1 ATATATTATGTTAACATA
105203553 ATATA-TATGTT-ACATA
1 ATATATTATGTTAACATA
105203569 ATA
1 ATA
105203572 AAATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
ATATATTATGTTAACATA
Found at i:105204832 original size:17 final size:17
Alignment explanation
Indices: 105204810--105204842 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
105204800 TTTTAAATGG
*
105204810 AAAATGTTATTGAAATA
1 AAAATGCTATTGAAATA
105204827 AAAATGCTATTGAAAT
1 AAAATGCTATTGAAAT
105204843 TGCAAGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (17 bp):
AAAATGCTATTGAAATA
Found at i:105211236 original size:43 final size:43
Alignment explanation
Indices: 105211188--105211277 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
105211178 CGAGATGTTA
** * *
105211188 CATAGCTGGGCTATTGTTATCGATATACTATAACATGTAAGAC
1 CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
105211231 CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
1 CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
105211274 CATA
1 CATA
105211278 TTTGGGATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (43 bp):
CATAGCTGGGCTATTGGCATCCATATAATATAACATGTAAGAC
Found at i:105217059 original size:43 final size:45
Alignment explanation
Indices: 105216938--105217104 Score: 161
Period size: 43 Copynumber: 3.9 Consensus size: 45
105216928 TCGAGATGTG
*
105216938 ATTACATGTAAGACCATGTCTGGGACATTGGCAT--TATATTGAA
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
* * *
105216981 ATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT-TAAT-CA
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
* * * *
105217024 ATTTCATGTAAGACCTTGTCTGGGACAGTGGCATCG-AT-ATG-T
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
* * * *
105217066 GTTAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATT-ACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
105217105 GAGCTTATGT
Statistics
Matches: 102, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
42 11 0.11
43 87 0.85
44 3 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (45 bp):
ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAATGAA
Found at i:105217091 original size:86 final size:83
Alignment explanation
Indices: 105216942--105217099 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 83
105216932 GATGTGATTA
* * * * *
105216942 CATGTAAGACCATGTCTGGGACATTGGCATTATATTGAAATTACGTGTAAGACCATGTTTGGGAC
1 CATGTAAGACCATGTCTGGGACAGTGGCATGATATTG--ATTACATGTAAGACCATATCTGGGAC
105217007 ATTGGCATCGTTAATCAATTT
64 A-TGGCATCGTTAATCAATTT
*
105217028 CATGTAAGACCTTGTCTGGGACAGTGGCATCGATATGTG-TTAACATGTAAGACCATATCTGGGA
1 CATGTAAGACCATGTCTGGGACAGTGGCAT-GATAT-TGATT-ACATGTAAGACCATATCTGGGA
*
105217092 TATGGCAT
63 CATGGCAT
105217100 TGTATGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 8 0.13
86 48 0.77
87 4 0.06
88 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (83 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATGATATTGATTACATGTAAGACCATATCTGGGACAT
GGCATCGTTAATCAATTT
Found at i:105218223 original size:30 final size:30
Alignment explanation
Indices: 105218189--105218246 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
105218179 AGGCACTTTT
* *
105218189 CACACGGGTGATCCACACACCCGTGTGTGA
1 CACACGGGTAAACCACACACCCGTGTGTGA
**
105218219 CACACGGGTAAACCACAGGCCCGTGTGT
1 CACACGGGTAAACCACACACCCGTGTGT
105218247 CATGGTCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGGGTAAACCACACACCCGTGTGTGA
Found at i:105226090 original size:43 final size:43
Alignment explanation
Indices: 105225995--105226094 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
105225985 ATCGAGATGT
* * * * * *
105225995 GATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTATAAGACATTGGCATCGTAATCA
105226038 GATTACGTGTAAGACCATGTATAAGACATTGGCATCGTTAATCA
1 GATTACGTGTAAGACCATGTATAAGACATTGGCATCG-TAATCA
*
105226082 -ATTTCGTGTAAGA
1 GATTACGTGTAAGA
105226095 TCCTATATGG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
43 45 0.92
44 4 0.08
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTATAAGACATTGGCATCGTAATCA
Found at i:105232122 original size:3 final size:3
Alignment explanation
Indices: 105232114--105232138 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
105232104 TTATGTAATT
105232114 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
105232139 AAAAATCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:105232566 original size:20 final size:21
Alignment explanation
Indices: 105232529--105232569 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
105232519 GTTGTCGCTA
*
105232529 AAATAAAAAATACATCTATAT
1 AAATAAAAAAAACATCTATAT
105232550 AAATAAAAAAAAC-TCTATAT
1 AAATAAAAAAAACATCTATAT
105232570 CGATGGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATAAAAAAAACATCTATAT
Found at i:105238341 original size:18 final size:18
Alignment explanation
Indices: 105238302--105238344 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
105238292 TCCAAGTTTT
*
105238302 TTTTATAGTTATTAAGTA
1 TTTTATAGTTATTAAGGA
*
105238320 TTTTA-AGTTATTTAGGA
1 TTTTATAGTTATTAAGGA
105238337 GTTTTATA
1 -TTTTATA
105238345 TCAATAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 10 0.48
18 10 0.48
19 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (18 bp):
TTTTATAGTTATTAAGGA
Found at i:105238775 original size:17 final size:19
Alignment explanation
Indices: 105238734--105238775 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
105238724 ATCTGTCTTC
*
105238734 TTTATTGTTCTAATTTTTGA
1 TTTATTGTTCT-AGTTTTGA
105238754 TTTATTGTTCT-GTTTT-A
1 TTTATTGTTCTAGTTTTGA
105238771 TTTAT
1 TTTAT
105238776 CTTAGTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 4 0.19
20 11 0.52
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.69
Consensus pattern (19 bp):
TTTATTGTTCTAGTTTTGA
Found at i:105241209 original size:29 final size:29
Alignment explanation
Indices: 105241116--105241244 Score: 102
Period size: 29 Copynumber: 4.5 Consensus size: 29
105241106 CAATCTAAAC
* *
105241116 TACAAGCTAAAGTGGTGGGCAGTCCAAAG
1 TACAAGCTAAAGTGATGGACAGTCCAAAG
** * *
105241145 TGTAAG-TCAAAGTGACAGG-CATTCCAAAG
1 TACAAGCT-AAAGTGA-TGGACAGTCCAAAG
**
105241174 TGTAAGCTAAAGTGATGGACAGTCCAAAG
1 TACAAGCTAAAGTGATGGACAGTCCAAAG
* * * *
105241203 TACAAGCCAAAGTGGTGAACAATCC-AAG
1 TACAAGCTAAAGTGATGGACAGTCCAAAG
*
105241231 TACAAGCCAAAGTG
1 TACAAGCTAAAGTG
105241245 GTAGACAATC
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
28 20 0.24
29 60 0.72
30 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.18
Consensus pattern (29 bp):
TACAAGCTAAAGTGATGGACAGTCCAAAG
Found at i:105241238 original size:28 final size:28
Alignment explanation
Indices: 105241177--105241263 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 28
105241167 TCCAAAGTGT
* * * *
105241177 AAGCTAAAGTGATGGACAGTCCAAAGTAC
1 AAGCCAAAGTGGTGAACAATCC-AAGTAC
105241206 AAGCCAAAGTGGTGAACAATCCAAGTAC
1 AAGCCAAAGTGGTGAACAATCCAAGTAC
* *
105241234 AAGCCAAAGTGGT-AGACAATCTAACTAC
1 AAGCCAAAGTGGTGA-ACAATCCAAGTAC
105241262 AA
1 AA
105241264 ACTATCCCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.02
28 32 0.63
29 18 0.35
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.16
Consensus pattern (28 bp):
AAGCCAAAGTGGTGAACAATCCAAGTAC
Found at i:105244233 original size:26 final size:26
Alignment explanation
Indices: 105244204--105244255 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
105244194 TTAAAAAGTC
105244204 AACAAAATTTGATAACTCATTGGCTT
1 AACAAAATTTGATAACTCATTGGCTT
105244230 AACAAAATTTGATAACTCATTGGCTT
1 AACAAAATTTGATAACTCATTGGCTT
105244256 TCTCCATCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (26 bp):
AACAAAATTTGATAACTCATTGGCTT
Found at i:105255408 original size:15 final size:16
Alignment explanation
Indices: 105255388--105255420 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
105255378 ATATATTTTT
105255388 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
105255403 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
105255420 T
1 T
105255421 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:105255506 original size:22 final size:22
Alignment explanation
Indices: 105255467--105255525 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
105255457 GTTTTAAGAA
*
105255467 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
105255488 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
105255510 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
105255526 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:105255542 original size:26 final size:24
Alignment explanation
Indices: 105255496--105255555 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
105255486 ATTTGTTTTA
*
105255496 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
105255520 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
105255546 TTTTTTATTT
1 ATATTTATTT
105255556 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:105256664 original size:15 final size:16
Alignment explanation
Indices: 105256644--105256673 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
105256634 TACACAGTTC
105256644 TTACAACA-ATAGAAT
1 TTACAACACATAGAAT
105256659 TTACAACACATAGAA
1 TTACAACACATAGAA
105256674 GTAAAAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (16 bp):
TTACAACACATAGAAT
Found at i:105257761 original size:28 final size:28
Alignment explanation
Indices: 105257721--105257776 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
105257711 CCATGAGAAG
105257721 AAAAAACATTTCAAGATTAAGTACCATT
1 AAAAAACATTTCAAGATTAAGTACCATT
105257749 AAAAAACATTTCAAGATTAAGTACCATT
1 AAAAAACATTTCAAGATTAAGTACCATT
105257777 TTGTAAGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAAAACATTTCAAGATTAAGTACCATT
Found at i:105264153 original size:19 final size:17
Alignment explanation
Indices: 105264123--105264157 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
105264113 GAAAGCAAGG
105264123 AAAAAGAGAGAAAATAA
1 AAAAAGAGAGAAAATAA
105264140 AAAAAGAAGAAGAAAATA
1 AAAAAG-AG-AGAAAATA
105264158 TCCAGTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (17 bp):
AAAAAGAGAGAAAATAA
Found at i:105265704 original size:24 final size:24
Alignment explanation
Indices: 105265677--105265729 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
105265667 ATATGGAAAG
*
105265677 AAATAAAAAAGATTTTATGCTAAT
1 AAATAAAAAAGATATTATGCTAAT
*** *
105265701 AAATGTGAAATATATTATGCTAAT
1 AAATAAAAAAGATATTATGCTAAT
105265725 AAATA
1 AAATA
105265730 CTAAATATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (24 bp):
AAATAAAAAAGATATTATGCTAAT
Found at i:105265735 original size:24 final size:24
Alignment explanation
Indices: 105265691--105265737 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
105265681 AAAAAAGATT
*
105265691 TTATGCTAATAAATGTGAAATATA
1 TTATGCTAATAAATCTGAAATATA
105265715 TTATGCTAATAAATACT-AAATAT
1 TTATGCTAATAAAT-CTGAAATAT
105265738 TAAAAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (24 bp):
TTATGCTAATAAATCTGAAATATA
Found at i:105268285 original size:46 final size:46
Alignment explanation
Indices: 105268215--105268397 Score: 222
Period size: 46 Copynumber: 3.8 Consensus size: 46
105268205 TGTAACCCGC
*
105268215 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
105268261 CCATAAGTGAACTCGGACTGAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * * *
105268307 CCATAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CC--A--TA-A-GT---GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
105268362 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
105268398 ATGCTCAACC
Statistics
Matches: 120, Mismatches: 8, Indels: 18
0.82 0.05 0.12
Matches are distributed among these distances:
46 74 0.62
48 1 0.01
49 1 0.01
50 3 0.03
51 3 0.03
52 1 0.01
53 1 0.01
55 36 0.30
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:105268417 original size:46 final size:45
Alignment explanation
Indices: 105268324--105268409 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
105268314 TACATCTCAC
* *
105268324 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
105268370 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
105268410 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:105270614 original size:11 final size:11
Alignment explanation
Indices: 105270546--105270616 Score: 55
Period size: 11 Copynumber: 6.8 Consensus size: 11
105270536 ATTCCAAAAA
*
105270546 TAATATTATTT
1 TAATATTAATT
105270557 TAATA--AATT
1 TAATATTAATT
105270566 TAAT-TTAAATT
1 TAATATT-AATT
*
105270577 TAATACTTATTT
1 TAATA-TTAATT
*
105270589 TAATAGT-ATT
1 TAATATTAATT
105270599 T--TATTAATT
1 TAATATTAATT
105270608 TAATATTAA
1 TAATATTAA
105270617 AACAATTATC
Statistics
Matches: 47, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 11 0.23
10 3 0.06
11 20 0.43
12 8 0.17
13 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:105275262 original size:24 final size:24
Alignment explanation
Indices: 105275226--105275277 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
105275216 TAAATATGGA
**
105275226 AATAAATAACAAAGATTTTATGCT
1 AATAAATAACAAAGATACTATGCT
** *
105275250 AATAAATGTCAAATATACTATGCT
1 AATAAATAACAAAGATACTATGCT
105275274 AATA
1 AATA
105275278 CATACTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.33
Consensus pattern (24 bp):
AATAAATAACAAAGATACTATGCT
Found at i:105275972 original size:10 final size:10
Alignment explanation
Indices: 105275941--105275965 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
105275931 TATCCTATAT
105275941 AATATAATAA
1 AATATAATAA
105275951 AATATAATAA
1 AATATAATAA
105275961 AATAT
1 AATAT
105275966 TTTAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AATATAATAA
Found at i:105277788 original size:29 final size:32
Alignment explanation
Indices: 105277736--105277796 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 32
105277726 GGAAAACGAA
* *
105277736 ATAAAATTATAATATCTATTTTTG-ATAGCTT
1 ATAAAATTATAATATATATATTTGCATAGCTT
105277767 ATAAAA-T-TAATATATATATTTGCATAGCTT
1 ATAAAATTATAATATATATATTTGCATAGCTT
105277797 TTTTTAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 13 0.48
30 8 0.30
31 6 0.22
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (32 bp):
ATAAAATTATAATATATATATTTGCATAGCTT
Found at i:105282002 original size:20 final size:20
Alignment explanation
Indices: 105281966--105282003 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
105281956 TGATTAGTCT
*
105281966 TTGGATTAGGTGTCTAAATG
1 TTGGATTAGGTGCCTAAATG
105281986 TTGGATCTA-GTGCCTAAA
1 TTGGAT-TAGGTGCCTAAA
105282004 GCATAGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGGATTAGGTGCCTAAATG
Found at i:105283182 original size:59 final size:58
Alignment explanation
Indices: 105283119--105283242 Score: 187
Period size: 59 Copynumber: 2.1 Consensus size: 58
105283109 GTGAAAAACG
* *
105283119 GAGAAATGAGAAACATTTGGAAATGAAATGTAGTTTTCTCCAAAATGAAAATGAAAATT
1 GAGAAATGAGAAACATTTAGAAATGAAATATAGTTTTCTCCAAAATGAAAATGAAAA-T
* * *
105283178 GAGAAATGAGAAACATTTAGAAATGAAATATGGTTTTCTCTAAATTGAAAATGAAAAT
1 GAGAAATGAGAAACATTTAGAAATGAAATATAGTTTTCTCCAAAATGAAAATGAAAAT
105283236 GA-AAATG
1 GAGAAATG
105283243 GATAAATAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 5 0.08
58 3 0.05
59 52 0.87
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.27
Consensus pattern (58 bp):
GAGAAATGAGAAACATTTAGAAATGAAATATAGTTTTCTCCAAAATGAAAATGAAAAT
Found at i:105287560 original size:16 final size:15
Alignment explanation
Indices: 105287528--105287562 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
105287518 ATGTAAATAA
105287528 ATATAATAATAACAT
1 ATATAATAATAACAT
*
105287543 ATATAATCAATTACAT
1 ATATAAT-AATAACAT
105287559 ATAT
1 ATAT
105287563 TAAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATAATAACAT
Found at i:105289939 original size:51 final size:50
Alignment explanation
Indices: 105289840--105289954 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 50
105289830 AATAAATAAT
* *
105289840 ATAAACAAATATTTATATTTATATAAAAACACTAGATCTAAGCAAATTAA
1 ATAAATAAATATTTATATTTATATAAAAACACTAGATCTAAACAAATTAA
* *
105289890 ATTAAATAAATATTTATATTTAT-TTAAAACA-TCATATCTGAAA-ACAATTAA
1 A-TAAATAAATATTTATATTTATATAAAAACACT-AGATCT-AAACA-AATTAA
105289941 ATAAATAAGATATT
1 ATAAATAA-ATATT
105289955 GAAAAATCAG
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
49 1 0.02
50 21 0.38
51 34 0.61
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (50 bp):
ATAAATAAATATTTATATTTATATAAAAACACTAGATCTAAACAAATTAA
Found at i:105292163 original size:3 final size:3
Alignment explanation
Indices: 105292155--105292203 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
105292145 AATTCAGATG
105292155 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
105292203 A
1 A
105292204 AGGCAAACTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:105297347 original size:21 final size:22
Alignment explanation
Indices: 105297318--105297364 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
105297308 CAGAAGGAGT
*
105297318 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
105297340 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
105297361 GAGT
1 GAGT
105297365 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:105303555 original size:128 final size:131
Alignment explanation
Indices: 105303288--105303627 Score: 364
Period size: 130 Copynumber: 2.6 Consensus size: 131
105303278 TGTAAACCTA
* * * * * ** * * ** *
105303288 AAGGAATATTCGATTGTTTTAAACAAACGAGAAATCACAACCCAGCACGATAATGCATGATTCC-
1 AAGGGATATTTGATTATTTTAAACAGACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
* * * * ** * * *
105303352 CGAATTGTCAAACACCGAGTATTACCTTCATTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTT
66 CGAATTGCCAAATATCGCGTATCGCCTTC-GTTTAAAGGATTTTTAAAAGACATGAGTGAAATTT
105303417 TG
130 TG
*
105303419 AAGGGATATTTGATTATTTTAAACA-A-TCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
1 AAGGGATATTTGATTATTTTAAACAGACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
* *
105303482 CGAATTGCCAATTATCGCGTATCGCCTTCGTTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTT
66 CGAATTGCCAAATATCGCGTATCGCCTTCGTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTT
105303546 G
131 G
* * * * * *
105303547 AAGTGATATTTGATTATTTTGAGCAGACGCGAAGTTGCAACCCAATACGTTAGGGCACGATTCCG
1 AAGGGATATTTGATTATTTTAAACAGACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
*
105303612 CGAATTGTCAAATATC
66 CGAATTGCCAAATATC
105303628 AAATCTCGTC
Statistics
Matches: 174, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
128 46 0.26
129 36 0.21
130 70 0.40
131 22 0.13
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (131 bp):
AAGGGATATTTGATTATTTTAAACAGACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
CGAATTGCCAAATATCGCGTATCGCCTTCGTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTT
G
Found at i:105303643 original size:130 final size:129
Alignment explanation
Indices: 105303383--105303656 Score: 352
Period size: 130 Copynumber: 2.1 Consensus size: 129
105303373 TTACCTTCAT
* * *
105303383 TTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAATCG
1 TTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAGCG
* ***
105303448 AAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAATTATCGCGTATCGCCTTCG
66 AAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATATCGCCTTCG
* * * *
105303512 TTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTTGATTATTTTGAGCAGACG
1 TTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACA-A-G
* * * * * *
105303576 CGAAGTTGCAACCCAATACGTTAGGGCACGATTCCGCGAATTGTCAAATATCAAATCTCGTCTTC
64 CGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATATCGCCTTC
105303641 G
129 G
*
105303642 TTTTAAAGAATTTTT
1 -TTTAAAGGATTTTT
105303657 GAATGAATGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
128 46 0.38
129 9 0.07
130 56 0.46
131 7 0.06
132 4 0.03
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (129 bp):
TTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAGCG
AAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAATATCGCCTTCG
Found at i:105305069 original size:145 final size:146
Alignment explanation
Indices: 105304909--105305197 Score: 336
Period size: 145 Copynumber: 2.0 Consensus size: 146
105304899 TAAAATACAT
* * * *
105304909 ATAATAATAAATTAAAAGATATGTTATATAAGATTATATATTAAAAGACG-AGGATAAATTT-AA
1 ATAATAATAAATTAAAAGATATATTATATAAGATTATACAATAAAAGACGAAAG-TAAATTTAAA
* * * **
105304972 GAGAAACTATATGCGTAAAATAATAT-AGAATTAATAATATGCATAGAATAAAA-TAATTTTACT
65 GA-AAACTATATACGCAAAATAATATAAG-ATTAATAATATGCATAAAATAAAATTAACCTTACT
105305035 ATAAAGTACT-TATATATAG
128 ATAAAGTA-TGTATATATAG
* * * * * * *
105305054 ATAATAATAATTTAAAAGATGTATTATGTAGGATTATGCAATAAAATATGAAAGTAAATTTAAAG
1 ATAATAATAAATTAAAAGATATATTATATAAGATTATACAATAAAAGACGAAAGTAAATTTAAAG
* * *
105305119 AAAATTATATATGCAAAATAATATAAGATTAATAATATGCATAAAATAAAATTAACCTTATTATA
66 AAAACTATATACGCAAAATAATATAAGATTAATAATATGCATAAAATAAAATTAACCTTACTATA
105305184 AAGTATGTATATAT
131 AAGTATGTATATAT
105305198 GTATATAAAG
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
145 90 0.75
146 30 0.25
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (146 bp):
ATAATAATAAATTAAAAGATATATTATATAAGATTATACAATAAAAGACGAAAGTAAATTTAAAG
AAAACTATATACGCAAAATAATATAAGATTAATAATATGCATAAAATAAAATTAACCTTACTATA
AAGTATGTATATATAG
Found at i:105313616 original size:11 final size:11
Alignment explanation
Indices: 105313602--105313626 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
105313592 TAGATTTAAT
105313602 ATTCATCATTA
1 ATTCATCATTA
105313613 ATTCATCATTA
1 ATTCATCATTA
105313624 ATT
1 ATT
105313627 GAAATTTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTCATCATTA
Found at i:105317850 original size:8 final size:7
Alignment explanation
Indices: 105317837--105317910 Score: 53
Period size: 8 Copynumber: 9.9 Consensus size: 7
105317827 CTATTTCAAA
105317837 AAAAAAGG
1 AAAAAA-G
105317845 AAAAAAG
1 AAAAAAG
105317852 --AAAAG
1 AAAAAAG
105317857 AAAAAGAG
1 AAAAA-AG
105317865 AAAAAAAG
1 -AAAAAAG
*
105317873 AAAATAAA
1 AAAA-AAG
105317881 ATAAAAAG
1 A-AAAAAG
*
105317889 AAAAGAAA
1 AAAA-AAG
105317897 AGAAAAAG
1 A-AAAAAG
105317905 AAAAAA
1 AAAAAA
105317911 ATGGAGAGGC
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
5 5 0.09
7 16 0.30
8 22 0.41
9 11 0.20
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:105317855 original size:5 final size:5
Alignment explanation
Indices: 105317847--105317908 Score: 63
Period size: 5 Copynumber: 11.8 Consensus size: 5
105317837 AAAAAAGGAA
* *
105317847 AAAAG AAAAG AAAAAG AGAAA- AAAAG AAAAT AAAATA AAAAG AAAAG
1 AAAAG AAAAG -AAAAG A-AAAG AAAAG AAAAG AAAA-G AAAAG AAAAG
105317894 AAAAG AAAAAG AAAA
1 AAAAG -AAAAG AAAA
105317909 AAATGGAGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
4 3 0.06
5 29 0.59
6 17 0.35
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:105317855 original size:13 final size:12
Alignment explanation
Indices: 105317834--105317910 Score: 70
Period size: 11 Copynumber: 6.5 Consensus size: 12
105317824 CTTCTATTTC
*
105317834 AAAAAA-AAAGG
1 AAAAAAGAAAAG
105317845 AAAAAAGAAAAG
1 AAAAAAGAAAAG
*
105317857 AAAAAGAGAAAAA
1 AAAAA-AGAAAAG
*
105317870 AAGAAAATAAAA-
1 AA-AAAAGAAAAG
*
105317882 TAAAAAGAAAAG
1 AAAAAAGAAAAG
*
105317894 AAAAGA-AAAAG
1 AAAAAAGAAAAG
105317905 AAAAAA
1 AAAAAA
105317911 ATGGAGAGGC
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
11 24 0.44
12 14 0.26
13 13 0.24
14 3 0.06
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:105317869 original size:21 final size:20
Alignment explanation
Indices: 105317845--105317911 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 20
105317835 AAAAAAAAGG
105317845 AAAAAAGAAAAGAAAAAGAGA
1 AAAAAAGAAAAGAAAAAGA-A
*
105317866 AAAAAAGAAAATAAAATA-AA
1 AAAAAAGAAAAGAAAA-AGAA
105317886 AAGAAAAGAAAAGAAAAAGAA
1 AA-AAAAGAAAAGAAAAAGAA
105317907 AAAAA
1 AAAAA
105317912 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.17
21 33 0.80
22 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAGAAAAAGAA
Found at i:105317871 original size:16 final size:16
Alignment explanation
Indices: 105317848--105317909 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
105317838 AAAAAGGAAA
105317848 AAAG-AAAAGAAAAAG
1 AAAGAAAAAGAAAAAG
105317863 AGAA-AAAAAGAAAATA-
1 A-AAGAAAAAGAAAA-AG
*
105317879 AAATAAAAAG-AAAAG
1 AAAGAAAAAGAAAAAG
105317894 AAAAGAAAAAGAAAAA
1 -AAAGAAAAAGAAAAA
105317910 AATGGAGAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
14 1 0.03
15 6 0.15
16 27 0.69
17 5 0.13
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAG
Found at i:105318917 original size:43 final size:43
Alignment explanation
Indices: 105318869--105319005 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
105318859 CGCCTTAATC
105318869 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * ** *** * *
105318912 CCCTAAGTAGTAGTGG-AGCAGATCGAA-GACCCG-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCAGATCTT-ATCT
* * *
105318953 CTCTAAACGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
105318996 CCCTAAGCAG
1 CCCTAAGCAG
105319006 CAGTGGAGCA
Statistics
Matches: 62, Mismatches: 26, Indels: 12
0.62 0.26 0.12
Matches are distributed among these distances:
40 2 0.03
41 19 0.31
42 10 0.16
43 29 0.47
44 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:105319000 original size:84 final size:84
Alignment explanation
Indices: 105318859--105319229 Score: 509
Period size: 84 Copynumber: 4.4 Consensus size: 84
105318849 CAAAATTCAG
*
105318859 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
105318924 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACC
* * * *
105318943 CGCCTTAATCCTCTAAACGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGCA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
105319008 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACC
* * *
105319027 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGTAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
** *
105319087 GCAGAGCAGATCGACGACAAC
66 GTGGAGCAGATCGAAGAC--C
* * *
105319108 TCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTACAGATCTTATCTCCCTAAGCAAT
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGT
**
105319173 AGTGGAGCAGATCGAAGATG
65 AGTGGAGCAGATCGAAGACC
* *
105319193 CGCCTTAACCCCCTGAGCAGTAGGGTAACAGGTTAAA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
105319230 GTATAGCAGA
Statistics
Matches: 248, Mismatches: 31, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
79 39 0.16
82 31 0.12
84 141 0.57
87 37 0.15
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACC
Found at i:105319156 original size:166 final size:163
Alignment explanation
Indices: 105318858--105319226 Score: 524
Period size: 166 Copynumber: 2.2 Consensus size: 163
105318848 ACAAAATTCA
*
105318858 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGT
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGTAGT
** * * *
105318923 AGTGGAGCAGATCGAAGACCCGCCTTAATCCTCTAAACGGTAGGGTAACAGGTTAAATTTGCAGA
61 AGCAGAGCAGATCGAAGACCCGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTACAGA
*
105318988 TCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACT
126 TCTTATCTCCCTAAGCAACAGTGGAGCAGATCGAAGA-T
*
105319027 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGTAGATCTTATCTCCCTAAGTAGTAGCAG
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGTAGTAGCAG
* * *
105319091 AGCAGATCGACGACAACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTACAGATC
66 AGCAGATCGAAGAC--C-CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTACAGATC
*
105319156 TTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGAT
128 TTATCTCCCTAAGCAACAGTGGAGCAGATCGAAGAT
* *
105319192 GCGCCTTAACCCCCTGAGCAGTAGGGTAACAGGTT
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
105319227 AAAGTATAGC
Statistics
Matches: 182, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
163 41 0.23
165 2 0.01
166 107 0.59
168 32 0.18
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (163 bp):
GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGTAGTAGCAG
AGCAGATCGAAGACCCGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTACAGATCTTA
TCTCCCTAAGCAACAGTGGAGCAGATCGAAGAT
Found at i:105319560 original size:87 final size:86
Alignment explanation
Indices: 105319380--105319570 Score: 256
Period size: 87 Copynumber: 2.2 Consensus size: 86
105319370 ATCTGACCTT
**
105319380 CGAAGCAGATCCAAGATGATTTAGCATCCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCAGA
1 CGAAGCAGATCCAAGATGATTTAGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGA
* * *
105319445 TCTGACCTTCAGGTGTTTACG
66 TCTAACATTCAGGTGCTTACG
* * * *
105319466 CTAAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCAG
1 C-GAAGCAGATCCAAGATGATTTAGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAG
**
105319531 ATCTAACATTCCTGTGCTTACAG
65 ATCTAACATTCAGGTGCTTAC-G
*
105319554 CGAAGCAGATCGAAGAT
1 CGAAGCAGATCCAAGAT
105319571 TTCAGCATGG
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
86 1 0.01
87 87 0.97
88 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (86 bp):
CGAAGCAGATCCAAGATGATTTAGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGA
TCTAACATTCAGGTGCTTACG
Found at i:105320153 original size:19 final size:19
Alignment explanation
Indices: 105320125--105320236 Score: 147
Period size: 19 Copynumber: 5.8 Consensus size: 19
105320115 AATATTTAAG
*
105320125 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
105320144 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
105320163 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
105320180 TATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
105320199 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
105320220 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
105320237 GATTTAATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.19
19 47 0.57
20 3 0.04
21 9 0.11
22 8 0.10
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:105320168 original size:36 final size:36
Alignment explanation
Indices: 105320128--105320236 Score: 146
Period size: 36 Copynumber: 2.9 Consensus size: 36
105320118 ATTTAAGGAT
105320128 ATACAATCTTAGATATGATATGCAATCTTAGATATG
1 ATACAATCTTAGATATGATATGCAATCTTAGATATG
*
105320164 ATACAATCTTAGATATTATATGCAATCTTAGATATG
1 ATACAATCTTAGATATGATATGCAATCTTAGATATG
* *
105320200 ATATGCAATCTTGAAGATATGATCTTGTAATCTTAGA
1 ATA--CAATCTT--AGATATGAT-ATGCAATCTTAGA
105320237 GATTTAATTT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
36 38 0.59
38 7 0.11
40 8 0.12
41 11 0.17
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (36 bp):
ATACAATCTTAGATATGATATGCAATCTTAGATATG
Found at i:105326755 original size:22 final size:21
Alignment explanation
Indices: 105326725--105326771 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
105326715 TACAAATTAA
105326725 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
105326747 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
105326768 ATCT
1 ATCT
105326772 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:105326777 original size:19 final size:19
Alignment explanation
Indices: 105326742--105326839 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
105326732 AGATTACAAG
105326742 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
105326763 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
105326782 ATAATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
105326799 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105326818 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105326837 ATC
1 ATC
105326840 CTTAAATATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:105326804 original size:36 final size:37
Alignment explanation
Indices: 105326753--105326839 Score: 140
Period size: 36 Copynumber: 2.3 Consensus size: 37
105326743 TCATATCTTC
105326753 AAGATTGCATATCATATCTAAGATTGCATATAATATCT
1 AAGATTG-ATATCATATCTAAGATTGCATATAATATCT
*
105326791 AAGATTG-TATCATATCTAAGATTGCATATCATATCT
1 AAGATTGATATCATATCTAAGATTGCATATAATATCT
105326827 AAGATTGCATATC
1 AAGATTG-ATATC
105326840 CTTAAATATT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
36 35 0.76
38 11 0.24
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (37 bp):
AAGATTGATATCATATCTAAGATTGCATATAATATCT
Found at i:105333327 original size:26 final size:25
Alignment explanation
Indices: 105333297--105333345 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
105333287 GAGATAAAAT
105333297 TTAAAATGATG-ATTAAAGATATTAGA
1 TTAAAAT-ATGTATTAAA-ATATTAGA
*
105333323 TTAAAATATGTATTCAAATATTA
1 TTAAAATATGTATTAAAATATTA
105333346 TAAATAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (25 bp):
TTAAAATATGTATTAAAATATTAGA
Found at i:105335019 original size:55 final size:54
Alignment explanation
Indices: 105334957--105335112 Score: 222
Period size: 55 Copynumber: 2.9 Consensus size: 54
105334947 TTCTGATTTT
* *
105334957 TCTTCTTTTGAATCGATTTTTTATATGTTTAAATCGATTTTTATGTTGGAATAC
1 TCTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTTATGTTGGAATAC
* * *
105335011 TACTTCTTTTGAATCGATTATTTATATGTTTAAATCTATTGTTATGTTGGAATGC
1 T-CTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTTATGTTGGAATAC
* * *
105335066 TCTACTTTTGAATAGATTGTTTTATACGTTTAAATCAATTGTTATGT
1 TCTTCTTTTGAATCGATT-TTTTATATGTTTAAATCAATTGTTATGT
105335113 AGCACGTCTA
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
54 16 0.18
55 75 0.82
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.52
Consensus pattern (54 bp):
TCTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTTATGTTGGAATAC
Found at i:105336582 original size:39 final size:39
Alignment explanation
Indices: 105336539--105336678 Score: 185
Period size: 39 Copynumber: 3.6 Consensus size: 39
105336529 CATTTTCACT
* *
105336539 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
105336578 TTTAAGCATATATCATAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
105336617 TTTAAGCATATAT-ATCAACACTCATGTAATTACATAACA
1 TTTAAGCATATATCA-CAATACTCATATAATCACATAACA
* *
105336656 TTCAAGCATAT-TCTCAATACTCA
1 TTTAAGCATATATCACAATACTCA
105336679 AAAACATGTT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
38 10 0.11
39 79 0.89
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.33
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:105337473 original size:16 final size:16
Alignment explanation
Indices: 105337452--105337490 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
105337442 AGGAACTCAC
105337452 CATAAGCAATCAAAAA
1 CATAAGCAATCAAAAA
105337468 CATAAGCAATCAAAAA
1 CATAAGCAATCAAAAA
105337484 CATAAGC
1 CATAAGC
105337491 CTAAGCTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.59, C:0.21, G:0.08, T:0.13
Consensus pattern (16 bp):
CATAAGCAATCAAAAA
Found at i:105342163 original size:16 final size:16
Alignment explanation
Indices: 105342131--105342165 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
105342121 ATTCACTTCC
**
105342131 TATAATTTAATTTTTT
1 TATAATTTAATAATTT
105342147 TATAATTTAATAATTT
1 TATAATTTAATAATTT
105342163 TAT
1 TAT
105342166 TTTTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATAATTTAATAATTT
Found at i:105348905 original size:22 final size:20
Alignment explanation
Indices: 105348843--105348938 Score: 86
Period size: 22 Copynumber: 4.5 Consensus size: 20
105348833 CCCAATATCT
105348843 AATAATAAAGTATATAAATATAA
1 AATAAT-AA-TATAT-AATATAA
* * *
105348866 CAT-ATAATTTTTAATATAA
1 AATAATAATATATAATATAA
105348885 AATAATAATGAGTATAATATAA
1 AATAATAAT-A-TATAATATAA
* *
105348907 AATAATAATATACAATAAATA
1 AATAATAATATATAATATA-A
105348928 AATAATAATAT
1 AATAATAATAT
105348939 TTAAAGTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
19 9 0.15
20 15 0.25
21 15 0.25
22 20 0.33
23 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (20 bp):
AATAATAATATATAATATAA
Found at i:105350719 original size:3 final size:3
Alignment explanation
Indices: 105350713--105350742 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
105350703 GGTTGTTGTT
105350713 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
105350743 CAAATGTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:105352170 original size:15 final size:16
Alignment explanation
Indices: 105352150--105352179 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
105352140 TTTTGCTTCT
105352150 TCTTCCTTCA-CATCA
1 TCTTCCTTCATCATCA
105352165 TCTTCCTTCATCATC
1 TCTTCCTTCATCATC
105352180 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTTCCTTCATCATCA
Found at i:105354108 original size:40 final size:40
Alignment explanation
Indices: 105354053--105354155 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
105354043 ATATTTTACT
* *
105354053 CGGATAAAGTATGTATTAATAGAAAACTGTATAATTTATC
1 CGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAAC
*
105354093 CGGATGAAGTATGTATTAACAGAAAACTGTATAATTTAAC
1 CGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAAC
*
105354133 CGGATGATGTATGTATTAATAGA
1 CGGATGAAGTATGTATTAATAGA
105354156 TATACTTAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (40 bp):
CGGATGAAGTATGTATTAATAGAAAACTGTATAATTTAAC
Found at i:105354182 original size:18 final size:18
Alignment explanation
Indices: 105354159--105354193 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
105354149 TAATAGATAT
*
105354159 ACTTAAGATCTAGTTGGC
1 ACTTAAAATCTAGTTGGC
105354177 ACTTAAAATCTAGTTGG
1 ACTTAAAATCTAGTTGG
105354194 ACTACCACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (18 bp):
ACTTAAAATCTAGTTGGC
Found at i:105355010 original size:46 final size:44
Alignment explanation
Indices: 105354917--105355010 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
105354907 ATTACAACAT
*
105354917 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
***
105354961 CATTCCATTCAACCAAACAGTTGAATTACTTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAA-TAC-TATTACAGCTCTATTC
105355007 CATT
1 CATT
105355011 ACAGCCCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 22 0.50
45 3 0.07
46 19 0.43
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
Found at i:105355013 original size:16 final size:16
Alignment explanation
Indices: 105354992--105355029 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
105354982 TGAATTACTT
*
105354992 ATTACAGCTCTATTCC
1 ATTACAGCCCTATTCC
105355008 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCC
105355024 ATTACA
1 ATTACA
105355030 ACCAACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.29, C:0.32, G:0.05, T:0.34
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:105356469 original size:22 final size:22
Alignment explanation
Indices: 105356415--105356506 Score: 84
Period size: 20 Copynumber: 4.4 Consensus size: 22
105356405 ATAATATTTG
**
105356415 TCACATAAATCATGAACTCAGA
1 TCACATAAATCATGAGTTCAGA
* * *
105356437 -C-CACAACTCATGAGTTTAGA
1 TCACATAAATCATGAGTTCAGA
**
105356457 TCACATAAATCATGAACTCAGA
1 TCACATAAATCATGAGTTCAGA
*
105356479 TCAC--AACTCATGAGTTCAGA
1 TCACATAAATCATGAGTTCAGA
105356499 TCACATAA
1 TCACATAA
105356507 TTTCCTAGTG
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
20 31 0.58
21 2 0.04
22 20 0.38
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (22 bp):
TCACATAAATCATGAGTTCAGA
Found at i:105356474 original size:42 final size:42
Alignment explanation
Indices: 105356415--105356506 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
105356405 ATAATATTTG
*
105356415 TCACATAAATCATGAACTCAGACCACAACTCATGAGTTTAGA
1 TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
*
105356457 TCACATAAATCATGAACTCAGATCACAACTCATGAGTTCAGA
1 TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
105356499 TCACATAA
1 TCACATAA
105356507 TTTCCTAGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (42 bp):
TCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:105359508 original size:73 final size:74
Alignment explanation
Indices: 105359340--105359603 Score: 266
Period size: 73 Copynumber: 3.6 Consensus size: 74
105359330 GTTTGAGCTA
* * * * *
105359340 AACATATAATCATGTCAAGTTACTCGTCCGGGCTAAACCTTTATATAGACACATC-AATGGCTTA
1 AACATAT-A-CATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTA
**** * *
105359404 -TTTGAGCT-G
64 GCCAAAGTTAT
* *
105359413 AACATATAATCGTGTCAAGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTA
1 AACATAT-A-CATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTA
105359478 GCCAAAGTTAT
64 GCCAAAGTTAT
* * * *
105359489 -ACATATACATGTTAGGTTACCCGTCTAGGCTAAACCTTTATATCGACCCATCAAATAGCTTGGC
1 AACATATACATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAGC
105359553 CAAAGTTAT
66 CAAAGTTAT
* * * *
105359562 ACACATATACATGTCAGGTTACCCATCCGGGGTAAACGTTTA
1 A-ACATATACATGTCAGGTTACCCGTCTGGGCTAAACCTTTA
105359604 AAACGGCATC
Statistics
Matches: 163, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
73 111 0.68
74 9 0.06
75 43 0.26
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (74 bp):
AACATATACATGTCAGGTTACCCGTCTGGGCTAAACCTTTATATCGACACATCAAATAGCTTAGC
CAAAGTTAT
Found at i:105370873 original size:19 final size:20
Alignment explanation
Indices: 105370827--105370873 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
105370817 ATCAAGTGGT
*
105370827 TAATTAGGCTTTAATTAAGTG
1 TAATTA-GCTTTAATTAAGAG
105370848 -AATTTAGC-TTAATTAAGAG
1 TAA-TTAGCTTTAATTAAGAG
105370867 TAATTAG
1 TAATTAG
105370874 GAAAAAAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 14 0.61
20 6 0.26
21 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (20 bp):
TAATTAGCTTTAATTAAGAG
Found at i:105372806 original size:18 final size:18
Alignment explanation
Indices: 105372774--105372853 Score: 70
Period size: 18 Copynumber: 4.4 Consensus size: 18
105372764 TAAATAAAAG
* *
105372774 TACTGAATGACTGACTGT
1 TACTGAATAATTGACTGT
* *
105372792 TACTAAATAATTGACTGA
1 TACTGAATAATTGACTGT
* * * *
105372810 TAATGAATAACTAATTGT
1 TACTGAATAATTGACTGT
* *
105372828 TACTGAACAATTGATTGT
1 TACTGAATAATTGACTGT
105372846 TACTGAAT
1 TACTGAAT
105372854 GATATTGATA
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (18 bp):
TACTGAATAATTGACTGT
Found at i:105372817 original size:36 final size:36
Alignment explanation
Indices: 105372777--105372855 Score: 86
Period size: 36 Copynumber: 2.2 Consensus size: 36
105372767 ATAAAAGTAC
* *
105372777 TGAATGACTGACTGTTACTAAATAATTGACTGATAA
1 TGAATGACTAACTGTTACTAAACAATTGACTGATAA
* * * * * *
105372813 TGAATAACTAATTGTTACTGAACAATTGATTGTTAC
1 TGAATGACTAACTGTTACTAAACAATTGACTGATAA
105372849 TGAATGA
1 TGAATGA
105372856 TATTGATAAA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
TGAATGACTAACTGTTACTAAACAATTGACTGATAA
Found at i:105374535 original size:27 final size:27
Alignment explanation
Indices: 105374490--105374541 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
105374480 CGCCAACAGG
* * *
105374490 TCTGGTAAGATGGTGTACACCAGCAAA
1 TCTGGCAAGATAGTATACACCAGCAAA
105374517 TCTGGCAAGATAGTATACACCAGCA
1 TCTGGCAAGATAGTATACACCAGCA
105374542 GGTTTGGCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
TCTGGCAAGATAGTATACACCAGCAAA
Found at i:105374549 original size:27 final size:27
Alignment explanation
Indices: 105374476--105374549 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
105374466 GGCGAGCTAA
* * * *
105374476 TATACGCCAACAGGTCTGGTAAGATGG
1 TATACACCAGCAGGTCTGGCAAGATAG
* **
105374503 TGTACACCAGCAAATCTGGCAAGATAG
1 TATACACCAGCAGGTCTGGCAAGATAG
*
105374530 TATACACCAGCAGGTTTGGC
1 TATACACCAGCAGGTCTGGC
105374550 GAGACGATGT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (27 bp):
TATACACCAGCAGGTCTGGCAAGATAG
Done.