Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 332 of 373
Found at i:111408672 original size:18 final size:18
Alignment explanation
Indices: 111408648--111408711 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
111408638 AATTGATTGA
111408648 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * * *
111408666 TATTGAATAATTTATTGT
1 TACTGAATAACTGATTAT
*
111408684 TACTGAATAACTGACTAT
1 TACTGAATAACTGATTAT
*
111408702 TACTAAATAA
1 TACTGAATAA
111408712 ATAATTGTTC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:111408711 original size:36 final size:36
Alignment explanation
Indices: 111408638--111408724 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
111408628 ATAACCAATC
* * * * *
111408638 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTAATTGTTACTGAATAACTGACTATTACTAAAT
*
111408674 AATTTATTGTTACTGAATAACTGACTATTACTAAAT
1 AATTAATTGTTACTGAATAACTGACTATTACTAAAT
*
111408710 AAATAATTGTT-CTGA
1 AATTAATTGTTACTGA
111408725 TTGACTGATC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
35 4 0.09
36 40 0.91
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.41
Consensus pattern (36 bp):
AATTAATTGTTACTGAATAACTGACTATTACTAAAT
Found at i:111411876 original size:122 final size:121
Alignment explanation
Indices: 111411652--111411890 Score: 424
Period size: 122 Copynumber: 2.0 Consensus size: 121
111411642 TAAAATAGAA
* *
111411652 ATTTCTATTTTGGCTTTTTACAAAGTCAAAAATTCTAATGAGTCATTGGCTTTTTTCATATTTTT
1 ATTTCTATTTTGGCTTTTTACAAAGTCAAAAATTCTAATGAGTCATTGGCTTTCTCCATATTTTT
111411717 GATTCGGCATCATTTTGTTGATTTTGTTTTAATTTGGTCCTCTTCTGCTCATGCTC
66 GATTCGGCATCATTTTGTTGATTTTGTTTTAATTTGGTCCTCTTCTGCTCATGCTC
*
111411773 ATTTCTATTTTTGGCTTTTTACAAAGTCAAAAATTCTAATGAGTCCTTGGCTTTCTCCATATTTT
1 ATTTCTA-TTTTGGCTTTTTACAAAGTCAAAAATTCTAATGAGTCATTGGCTTTCTCCATATTTT
* *
111411838 TTATTCGGCATCATTTTGTTGATTTTGTTTTAATTTGGTCCTTTTCTGCTCAT
65 TGATTCGGCATCATTTTGTTGATTTTGTTTTAATTTGGTCCTCTTCTGCTCAT
111411891 TTTTATCTCT
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
121 7 0.06
122 105 0.94
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (121 bp):
ATTTCTATTTTGGCTTTTTACAAAGTCAAAAATTCTAATGAGTCATTGGCTTTCTCCATATTTTT
GATTCGGCATCATTTTGTTGATTTTGTTTTAATTTGGTCCTCTTCTGCTCATGCTC
Found at i:111412158 original size:26 final size:26
Alignment explanation
Indices: 111412119--111412174 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
111412109 GATTTGGCAG
111412119 TGCACAAGTCGACTT-GTTAATTCCC
1 TGCACAAGTCGACTTGGTTAATTCCC
* *
111412144 TGCACAGATTCGACTTGGTTAATTTCC
1 TGCACA-AGTCGACTTGGTTAATTCCC
111412171 TGCA
1 TGCA
111412175 TAGTTCAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 6 0.22
26 8 0.30
27 13 0.48
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (26 bp):
TGCACAAGTCGACTTGGTTAATTCCC
Found at i:111418685 original size:35 final size:33
Alignment explanation
Indices: 111418621--111418685 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
111418611 CCTGTAAATT
* *
111418621 TAATTATAAATTATATAAAATATTAGAATAAAA
1 TAATTATAAATAATATAAAATACTAGAATAAAA
111418654 TAATTATTAAATAATGATAAAA-ACTATGAATA
1 TAATTA-TAAATAAT-ATAAAATACTA-GAATA
111418686 TGTTCAAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 6 0.22
34 10 0.37
35 11 0.41
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (33 bp):
TAATTATAAATAATATAAAATACTAGAATAAAA
Found at i:111419022 original size:15 final size:16
Alignment explanation
Indices: 111419002--111419031 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
111418992 AAAATTATTT
111419002 TATAC-TAATATTTTA
1 TATACTTAATATTTTA
111419017 TATACTTAATATTTT
1 TATACTTAATATTTT
111419032 TGATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (16 bp):
TATACTTAATATTTTA
Found at i:111421421 original size:50 final size:51
Alignment explanation
Indices: 111421240--111421432 Score: 153
Period size: 50 Copynumber: 3.8 Consensus size: 51
111421230 ATCTTGTATT
* * *
111421240 TATTCGGCCACATAGGTATGTACATATGTGACGTTATA-TTGAATCTTGAA
1 TATTCGGCCATATAGGTATGCACATATGTGATGTTATATTTGAATCTTGAA
* * * * * *
111421290 TATTTGACCATGA-AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTA
1 TATTCGGCCAT-ATAGGTATGCACATATGTGATGTTATATTTGAATCTTGAA
* * * * * * *
111421340 TATTCAGCCATAT-GAGTAAGTACTTAGGTGATGTTAAATTTG-ATCTTGCA
1 TATTCGGCCATATAG-GTATGCACATATGTGATGTTATATTTGAATCTTGAA
* * * *
111421390 TATTTGGCCATATAGGTATGCACATTTGTGATATTATCTTTGA
1 TATTCGGCCATATAGGTATGCACATATGTGATGTTATATTTGA
111421433 TTCTCTATAA
Statistics
Matches: 106, Mismatches: 30, Indels: 13
0.71 0.20 0.09
Matches are distributed among these distances:
49 4 0.04
50 94 0.89
51 8 0.08
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (51 bp):
TATTCGGCCATATAGGTATGCACATATGTGATGTTATATTTGAATCTTGAA
Found at i:111422771 original size:10 final size:9
Alignment explanation
Indices: 111422738--111422787 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
111422728 AGATAAGTCT
111422738 TTTTTTTAA
1 TTTTTTTAA
111422747 TTTTTTTAA
1 TTTTTTTAA
111422756 TTTTTTTATA
1 TTTTTTTA-A
* *
111422766 TATTTTAAA
1 TTTTTTTAA
*
111422775 TTATTTT-A
1 TTTTTTTAA
111422783 TTTTT
1 TTTTT
111422788 AAGTTTTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
8 5 0.15
9 22 0.65
10 7 0.21
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:111422771 original size:19 final size:19
Alignment explanation
Indices: 111422738--111422783 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
111422728 AGATAAGTCT
* *
111422738 TTTTTTTA-ATTTTTTTAA
1 TTTTTTTATATATTTTAAA
111422756 TTTTTTTATATATTTTAAA
1 TTTTTTTATATATTTTAAA
*
111422775 TTATTTTAT
1 TTTTTTTAT
111422784 TTTTAAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTTTATATATTTTAAA
Found at i:111423426 original size:14 final size:13
Alignment explanation
Indices: 111423407--111423440 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
111423397 TTGCTTAATT
111423407 AAAAATAACTTTTA
1 AAAAATAA-TTTTA
111423421 AAAAATAATTTTA
1 AAAAATAATTTTA
111423434 AGAAAAT
1 A-AAAAT
111423441 TTGTTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (13 bp):
AAAAATAATTTTA
Found at i:111432970 original size:18 final size:18
Alignment explanation
Indices: 111432949--111433067 Score: 71
Period size: 19 Copynumber: 6.3 Consensus size: 18
111432939 AAAATTAGAA
111432949 AAAAATTATAAATTTTAT
1 AAAAATTATAAATTTTAT
*
111432967 AAAAGTTATTAAATTTTAAT
1 AAAAATTA-TAAATTTT-AT
111432987 AAAAA-TATAAAATATATTA-
1 AAAAATTAT-AAAT-T-TTAT
**
111433006 AAAAATATATATTTTTTTAT
1 AAAAAT-TATA-AATTTTAT
* *** *
111433026 AAAAATTGTAAAAACTAA
1 AAAAATTATAAATTTTAT
*
111433044 AAAAATTGTAAAATTTTAT
1 AAAAATTAT-AAATTTTAT
111433063 AAAAA
1 AAAAA
111433068 CCATAAAAAA
Statistics
Matches: 76, Mismatches: 15, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
18 19 0.25
19 35 0.46
20 16 0.21
21 6 0.08
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.39
Consensus pattern (18 bp):
AAAAATTATAAATTTTAT
Found at i:111433847 original size:4 final size:4
Alignment explanation
Indices: 111433831--111433860 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
111433821 GGTGCTCCTT
*
111433831 AATA AATA TATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
111433861 AAGACAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:111434082 original size:29 final size:28
Alignment explanation
Indices: 111434050--111434115 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
111434040 AAAAATTTTC
*
111434050 ATTTAAAATTTCAAAAAATTATAACAATT
1 ATTTAAAA-TTCAAAAAAATATAACAATT
* *
111434079 ATTTAAACATTCAAAAAAATATTATAATT
1 ATTTAAA-ATTCAAAAAAATATAACAATT
*
111434108 TTTTAAAA
1 ATTTAAAA
111434116 AATAAAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 1 0.03
29 30 0.94
30 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (28 bp):
ATTTAAAATTCAAAAAAATATAACAATT
Found at i:111434098 original size:30 final size:29
Alignment explanation
Indices: 111434050--111434132 Score: 73
Period size: 29 Copynumber: 2.8 Consensus size: 29
111434040 AAAAATTTTC
111434050 ATTTAAAATTTC-AAAAAATTATAACAATT
1 ATTTAAAA-TTCAAAAAAATTATAACAATT
* *
111434079 ATTTAAACATTCAAAAAAA-TATTATAATT
1 ATTTAAA-ATTCAAAAAAATTATAACAATT
* *
111434108 TTTTAAAAAAT-AAAAAATATTATAA
1 ATTT-AAAATTCAAAAAA-ATTATAA
111434133 GTTTTCTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
28 6 0.14
29 24 0.55
30 14 0.32
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (29 bp):
ATTTAAAATTCAAAAAAATTATAACAATT
Found at i:111434130 original size:27 final size:28
Alignment explanation
Indices: 111434092--111434166 Score: 100
Period size: 27 Copynumber: 2.7 Consensus size: 28
111434082 TAAACATTCA
111434092 AAAAAATATTATAATTTTTTA-AAAAAT
1 AAAAAATATTATAATTTTTTATAAAAAT
*
111434119 AAAAAATATTATAAGTTTTCTATAAAAAT
1 AAAAAATATTATAA-TTTTTTATAAAAAT
*
111434148 ACTAAAA-ATTATAATTTTT
1 A-AAAAATATTATAATTTTT
111434167 AATTGTTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 14 0.33
28 10 0.24
29 14 0.33
30 4 0.10
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (28 bp):
AAAAAATATTATAATTTTTTATAAAAAT
Found at i:111435046 original size:21 final size:19
Alignment explanation
Indices: 111435011--111435058 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
111435001 TCTTAAACTT
111435011 TTTTAAAAAATTAAATTAA
1 TTTTAAAAAATTAAATTAA
*
111435030 TTTTAAAAACATATAAATTTA
1 TTTTAAAAA-AT-TAAATTAA
111435051 -TTTAAAAA
1 TTTTAAAAA
111435059 TTCATTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 9 0.35
20 10 0.38
21 7 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTTAAAAAATTAAATTAA
Found at i:111438276 original size:14 final size:15
Alignment explanation
Indices: 111438239--111438288 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 15
111438229 TCTATTTCTA
*
111438239 TTCTCTGTTTGTTT-C
1 TTCTTTGTTT-TTTGC
111438254 TTCTTTGTTTTTTGC
1 TTCTTTGTTTTTTGC
*
111438269 TT-TTTGTTTTCTGC
1 TTCTTTGTTTTTTGC
111438283 TTCTTT
1 TTCTTT
111438289 TTTGTTTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 16 0.52
15 15 0.48
ACGTcount: A:0.00, C:0.16, G:0.12, T:0.72
Consensus pattern (15 bp):
TTCTTTGTTTTTTGC
Found at i:111440474 original size:147 final size:148
Alignment explanation
Indices: 111440278--111440577 Score: 559
Period size: 147 Copynumber: 2.0 Consensus size: 148
111440268 ATTAATCATC
111440278 TAATTTACCAAGTTCATTTTTTTGTCATTTCTCCATCACTTACGATTAAGACTTAGATGATAGAA
1 TAATTTACCAAGTTCATTTTTTTGTCATTTCTCCATCACTTACGATTAAGACTTAGATGATAGAA
111440343 GGCGTATAAGTTTAAAAATAATATAATAATATATTTAGTCCTTAATAATTACATATTTTATTAAT
66 GGCGTATAAGTTTAAAAATAATATAATAATATATTTAGTCCTTAATAATTACATATTTTATTAAT
111440408 TTGATTATGATTATAAAA
131 TTGATTATGATTATAAAA
*
111440426 -AATTTACCGAA-TTCATTTTTTTGTCATTTTTCCATCACTTACGATTAAGACTTAGATGATAGA
1 TAATTTACC-AAGTTCATTTTTTTGTCATTTCTCCATCACTTACGATTAAGACTTAGATGATAGA
*
111440489 AGGCGTATAAGTTTAAAAATGATATAATAATATATTTAGTCCTTAATAATTACATATTTTATTAA
65 AGGCGTATAAGTTTAAAAATAATATAATAATATATTTAGTCCTTAATAATTACATATTTTATTAA
111440554 TTTGATTATGATTATAAAA
130 TTTGATTATGATTATAAAA
111440573 TAATT
1 TAATT
111440578 AACTCTCAAA
Statistics
Matches: 148, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
147 142 0.96
148 6 0.04
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (148 bp):
TAATTTACCAAGTTCATTTTTTTGTCATTTCTCCATCACTTACGATTAAGACTTAGATGATAGAA
GGCGTATAAGTTTAAAAATAATATAATAATATATTTAGTCCTTAATAATTACATATTTTATTAAT
TTGATTATGATTATAAAA
Found at i:111444657 original size:11 final size:11
Alignment explanation
Indices: 111444643--111444681 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
111444633 AATATAATAG
111444643 CAAAATTACAT
1 CAAAATTACAT
* * *
111444654 CAAAATGATAG
1 CAAAATTACAT
111444665 CAAAATTACAT
1 CAAAATTACAT
111444676 CAAAAT
1 CAAAAT
111444682 GGTAGCAAAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.23
Consensus pattern (11 bp):
CAAAATTACAT
Found at i:111444664 original size:22 final size:22
Alignment explanation
Indices: 111444639--111444690 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
111444629 TAACAATATA
111444639 ATAGCAAAATTACATCAAAATG
1 ATAGCAAAATTACATCAAAATG
111444661 ATAGCAAAATTACATCAAAATG
1 ATAGCAAAATTACATCAAAATG
*
111444683 GTAGCAAA
1 ATAGCAAA
111444691 CAACAACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.54, C:0.13, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAGCAAAATTACATCAAAATG
Found at i:111444819 original size:19 final size:20
Alignment explanation
Indices: 111444772--111444819 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
111444762 AAAATAGACC
*
111444772 TTAT-TTTTTATTCGAACTT
1 TTATATTTTTATTCGAAATT
111444791 TTATATTTTTATTC-AAATT
1 TTATATTTTTATTCGAAATT
*
111444810 TTCTATTTTT
1 TTATATTTTT
111444820 TAAGTGAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (20 bp):
TTATATTTTTATTCGAAATT
Found at i:111444820 original size:20 final size:19
Alignment explanation
Indices: 111444772--111444821 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
111444762 AAAATAGACC
*
111444772 TTATTTTTTATTCGAACTT
1 TTATTTTTTATTCAAACTT
*
111444791 TTATATTTTTATTCAAATTT
1 TTAT-TTTTTATTCAAACTT
111444811 TCTATTTTTTA
1 T-TATTTTTTA
111444822 AGTGAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 4 0.15
20 20 0.74
21 3 0.11
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (19 bp):
TTATTTTTTATTCAAACTT
Found at i:111457221 original size:47 final size:47
Alignment explanation
Indices: 111457168--111457462 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
111457158 ACAAGATATG
* *
111457168 TATATGTGATAAAGCCGAATGGCCAATATGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
111457215 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
** * *
111457262 TATATGTGATAAGGCCGGGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
111457309 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
111457356 TATATTTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
111457403 TATATGAGATAAGACCTAATGGCTAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
111457450 TAAATGTGATAAG
1 TATATGTGATAAG
111457463 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 227 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:111461140 original size:21 final size:20
Alignment explanation
Indices: 111461109--111461167 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
111461099 ATTGGGTGTA
111461109 TCAGTTCTTACGAGCTTCTGT
1 TCAG-TCTTACGAGCTTCTGT
*
111461130 TTAGCTCTTACGAGCTTCTGT
1 TCAG-TCTTACGAGCTTCTGT
*
111461151 TCAGT-TTTCGAGCTTCT
1 TCAGTCTTACGAGCTTCT
111461168 ATTGGTGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.32
20 1 0.03
21 22 0.65
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.44
Consensus pattern (20 bp):
TCAGTCTTACGAGCTTCTGT
Found at i:111469502 original size:29 final size:30
Alignment explanation
Indices: 111469470--111469550 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 30
111469460 AATTTAATCC
*
111469470 TTTTAAAAATAATAAAATTATGT-TTTAAA
1 TTTTAAAAATAATAAAATTATATATTTAAA
** * **
111469499 TTTTTTAAAT-ATAAAAATATATATTTATT
1 TTTTAAAAATAATAAAATTATATATTTAAA
111469528 TTTTCAAAAATAATAAAATTATA
1 TTTT-AAAAATAATAAAATTATA
111469551 AATTAATATA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
28 10 0.25
29 16 0.40
30 4 0.10
31 10 0.25
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
TTTTAAAAATAATAAAATTATATATTTAAA
Found at i:111476749 original size:16 final size:17
Alignment explanation
Indices: 111476728--111476771 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
111476718 TGTTTACTTA
111476728 ATTTTATTTA-TTAAAC
1 ATTTTATTTATTTAAAC
* *
111476744 ATTTTATTAATTTAAAT
1 ATTTTATTTATTTAAAC
111476761 ATTTTAGTTTA
1 ATTTTA-TTTA
111476772 GAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 9 0.39
17 11 0.48
18 3 0.13
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (17 bp):
ATTTTATTTATTTAAAC
Found at i:111477339 original size:22 final size:22
Alignment explanation
Indices: 111477306--111477387 Score: 94
Period size: 22 Copynumber: 3.6 Consensus size: 22
111477296 ATATAATGTG
111477306 AATTCTAATTTTAAAAAATTATT
1 AATT-TAATTTTAAAAAATTATT
*
111477329 AATTTAATTTTAAATAAAATATT
1 AATTTAATTTTAAA-AAATTATT
* *
111477352 AAAATT-ATTTTATAAAATTATT
1 -AATTTAATTTTAAAAAATTATT
*
111477374 AATTTAAGTTTAAA
1 AATTTAATTTTAAA
111477388 TAAAAGTGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
21 4 0.08
22 23 0.47
23 18 0.37
24 4 0.08
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (22 bp):
AATTTAATTTTAAAAAATTATT
Found at i:111477390 original size:24 final size:23
Alignment explanation
Indices: 111477306--111477392 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
111477296 ATATAATGTG
*
111477306 AATTCTAATTTTAA-AAAATTATT
1 AATT-TAATTTAAATAAAATTATT
111477329 AATTTAATTTTAAATAAAA-TATT
1 AATTTAA-TTTAAATAAAATTATT
* *
111477352 AAAATT-ATTT-TATAAAATTATT
1 -AATTTAATTTAAATAAAATTATT
111477374 AATTTAAGTTTAAATAAAA
1 AATTTAA-TTTAAATAAAA
111477393 GTGGTTAGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
21 10 0.19
22 11 0.21
23 17 0.33
24 14 0.27
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (23 bp):
AATTTAATTTAAATAAAATTATT
Found at i:111480512 original size:21 final size:21
Alignment explanation
Indices: 111480478--111480519 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
111480468 GAAATATAAG
**
111480478 TATAAATATTATAATTAAAAA
1 TATAAATAACATAATTAAAAA
*
111480499 TATAAATAACATAATTCAAAA
1 TATAAATAACATAATTAAAAA
111480520 CTAGATTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
TATAAATAACATAATTAAAAA
Found at i:111489795 original size:46 final size:47
Alignment explanation
Indices: 111489713--111489911 Score: 125
Period size: 53 Copynumber: 4.0 Consensus size: 47
111489703 TTGCACATAG
* ** *
111489713 TCACATATCACATACCGAGGCCATAGCCTTGCCATGGTCTTACACGGT
1 TCACATAT-ACATACCGAAGCCATAGCCCAGACATGGTCTTACACGGT
* * *
111489761 TCACATAT-CATACCGAAGCCATATCCCAGACATGGTCTTATACGGAA
1 TCACATATACATACCGAAGCCATAGCCCAGACATGGTCTTACACGG-T
* * * *
111489808 TCACATTATCACATTATACCGATGCTATAGCCCAG-CTATGGTCTTATACGGAG
1 TCACA-TAT-AC---ATACCGAAGCCATAGCCCAGAC-ATGGTCTTACACGG-T
* *
111489861 TCACATTATCACATTGCACCGATGCCATAGCCCAG-CTATGGTCTTAAACGG
1 TCACA-TAT-ACA-T--ACCGAAGCCATAGCCCAGAC-ATGGTCTTACACGG
111489912 GCGCACTTAT
Statistics
Matches: 127, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
46 31 0.24
47 5 0.04
48 11 0.09
50 2 0.02
51 1 0.01
52 1 0.01
53 76 0.60
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (47 bp):
TCACATATACATACCGAAGCCATAGCCCAGACATGGTCTTACACGGT
Found at i:111489842 original size:53 final size:53
Alignment explanation
Indices: 111489761--111489911 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
111489751 CTTACACGGT
* *
111489761 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
111489816 TCACATTATACCGATGCTATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
111489869 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
111489912 GCGCACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:111497128 original size:46 final size:47
Alignment explanation
Indices: 111497046--111497138 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 47
111497036 TTGCACATAG
* ** * *
111497046 TCACATATCACATACCGAGGCCATAGCCTTGCCATGGTCTTACACGGT
1 TCACATAT-ACATACCGAAGCCATAGCCCAGACATGGTATTACACGGT
* *
111497094 TCACATAT-CATACCGAAGCCATATCCCAGACATGGTATTATACGG
1 TCACATATACATACCGAAGCCATAGCCCAGACATGGTATTACACGG
111497139 AATCACATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
46 30 0.79
48 8 0.21
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (47 bp):
TCACATATACATACCGAAGCCATAGCCCAGACATGGTATTACACGGT
Found at i:111497175 original size:53 final size:53
Alignment explanation
Indices: 111497094--111497244 Score: 178
Period size: 53 Copynumber: 2.8 Consensus size: 53
111497084 CTTACACGGT
* *
111497094 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTATTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAACCCAG-CTATGGTATTATACGGAATCACATTA
* *
111497149 TCACATTATACCGATGCCATAACCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAACCCAGCTATGGTATTATACGGAATCACATTA
** * * * *
111497202 TCACATTGCATCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAACCCAGCTATGGTATTATACGG
111497245 GCGCACTTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 1 0.01
53 78 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAACCCAGCTATGGTATTATACGGAATCACATTA
Found at i:111499580 original size:21 final size:21
Alignment explanation
Indices: 111499522--111499567 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
111499512 CGACACATAA
111499522 GTGCCTGAA-ACGACACACGAG
1 GTGCCT-AATACGACACACGAG
111499543 GTGCCTAATACGACACACGAG
1 GTGCCTAATACGACACACGAG
111499564 GTGC
1 GTGC
111499568 GTGATATGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.13
Consensus pattern (21 bp):
GTGCCTAATACGACACACGAG
Found at i:111499857 original size:103 final size:103
Alignment explanation
Indices: 111499694--111499906 Score: 372
Period size: 103 Copynumber: 2.1 Consensus size: 103
111499684 ATTACTTTTC
*
111499694 AATTTCAATTTCATTCTCAATTTAATTACAACTCAATTCAATATAATTCAATTCACTTTTCAATG
1 AATTTCAATTTCATTCTCAATTTAATTACAACTCAATTCAATATAATTCAATTCACTTTTCAATA
*
111499759 ACAAATATTCGATTTCACAATAGTCACTTATTTATACT
66 ACAAATATTCGATTTCACAATAGTCACTTATTCATACT
* *
111499797 AATTTCGATTTCATTCTCAATTTAATTACAACTCAATTCAATATAATTCAATTCATTTTTCAATA
1 AATTTCAATTTCATTCTCAATTTAATTACAACTCAATTCAATATAATTCAATTCACTTTTCAATA
* *
111499862 ACAGATATTCGATTTCACAATAGTCATTTATTCATACT
66 ACAAATATTCGATTTCACAATAGTCACTTATTCATACT
111499900 AATTTCA
1 AATTTCA
111499907 TCACATTTCT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.37, C:0.18, G:0.03, T:0.42
Consensus pattern (103 bp):
AATTTCAATTTCATTCTCAATTTAATTACAACTCAATTCAATATAATTCAATTCACTTTTCAATA
ACAAATATTCGATTTCACAATAGTCACTTATTCATACT
Found at i:111510627 original size:18 final size:19
Alignment explanation
Indices: 111510599--111510652 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
111510589 ATAATATAAT
111510599 TATTTAATTAATAAATATC
1 TATTTAATTAATAAATATC
* *
111510618 T-TTTACTTAATAATTATC
1 TATTTAATTAATAAATATC
111510636 TATTTAA-TAACTAAATA
1 TATTTAATTAA-TAAATA
111510653 CAAGTATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTTAATTAATAAATATC
Found at i:111511149 original size:28 final size:28
Alignment explanation
Indices: 111511114--111511169 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
111511104 AATTTAAGCT
111511114 AATTCACCTTATTAAACTCTAATTAATC
1 AATTCACCTTATTAAACTCTAATTAATC
111511142 AATTCACCTTATTAAACTCTAATTAATC
1 AATTCACCTTATTAAACTCTAATTAATC
111511170 GCTCAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (28 bp):
AATTCACCTTATTAAACTCTAATTAATC
Found at i:111515613 original size:21 final size:21
Alignment explanation
Indices: 111515529--111515613 Score: 64
Period size: 21 Copynumber: 4.1 Consensus size: 21
111515519 CCTGATCAAT
* *
111515529 ATACGACACA-TAAGTGCTTG
1 ATACGACACACGAAGTGCCTG
* * *
111515549 AAACGACACACGAGGTGCCTA
1 ATACGACACACGAAGTGCCTG
* * * *
111515570 ATATGACACACGAGGTACGTG
1 ATACGACACACGAAGTGCCTG
**
111515591 ATACGACACATAAAGTGCCTG
1 ATACGACACACGAAGTGCCTG
111515612 AT
1 AT
111515614 CGGCAAAGCC
Statistics
Matches: 48, Mismatches: 16, Indels: 1
0.74 0.25 0.02
Matches are distributed among these distances:
20 9 0.19
21 39 0.81
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (21 bp):
ATACGACACACGAAGTGCCTG
Found at i:111515828 original size:17 final size:17
Alignment explanation
Indices: 111515808--111515853 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
111515798 TAGTCACTTA
111515808 TTCATACT-AATTTCAAT
1 TTCATACTCAATTT-AAT
*
111515825 TTCATTCTCAATTTAAT
1 TTCATACTCAATTTAAT
*
111515842 TACA-ACTCAATT
1 TTCATACTCAATT
111515854 CAATATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 7 0.28
17 13 0.52
18 5 0.20
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.46
Consensus pattern (17 bp):
TTCATACTCAATTTAAT
Found at i:111515892 original size:103 final size:102
Alignment explanation
Indices: 111515714--111515925 Score: 406
Period size: 103 Copynumber: 2.1 Consensus size: 102
111515704 ATTACTTTTC
111515714 AATTTCAATTTCATTCTCAATTTAATTACACTCAATTCAATATAATTCAATTCACTTTTCAATAA
1 AATTTCAATTTCATTCTCAATTTAATTACACTCAATTCAATATAATTCAATTCACTTTTCAATAA
111515779 CAAATATTCGATTTCACAATAGTCACTTATTCATACT
66 CAAATATTCGATTTCACAATAGTCACTTATTCATACT
*
111515816 AATTTCAATTTCATTCTCAATTTAATTACAACTCAATTCAATATAATTCAATTCATTTTTCAATA
1 AATTTCAATTTCATTCTCAATTTAATTAC-ACTCAATTCAATATAATTCAATTCACTTTTCAATA
111515881 ACAAATATTCGATTTCACAATAGTCACTTATTCATACT
65 ACAAATATTCGATTTCACAATAGTCACTTATTCATACT
111515919 AATTTCA
1 AATTTCA
111515926 TCACATTTCT
Statistics
Matches: 108, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
102 29 0.27
103 79 0.73
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.42
Consensus pattern (102 bp):
AATTTCAATTTCATTCTCAATTTAATTACACTCAATTCAATATAATTCAATTCACTTTTCAATAA
CAAATATTCGATTTCACAATAGTCACTTATTCATACT
Found at i:111515914 original size:49 final size:49
Alignment explanation
Indices: 111515758--111515914 Score: 108
Period size: 49 Copynumber: 3.1 Consensus size: 49
111515748 ATTCAATATA
*
111515758 ATTCAATTCACTTTTCAATAACAAATATTCGATTTCACAATAGTCACTT
1 ATTCAATTCATTTTTCAATAACAAATATTCGATTTCACAATAGTCACTT
* * ** * * * *
111515807 ATTC-ATAC-TAATTTCAATTTC--AT-TCTCAATTTAATTACAACTCAATTCAATAT
1 ATTCAATTCAT-TTTTCAATAACAAATAT-TCGA-TT--TCACAA-T--AGTCACT-T
111515860 AATTCAATTCATTTTTCAATAACAAATATTCGATTTCACAATAGTCACTT
1 -ATTCAATTCATTTTTCAATAACAAATATTCGATTTCACAATAGTCACTT
111515910 ATTCA
1 ATTCA
111515915 TACTAATTTC
Statistics
Matches: 76, Mismatches: 17, Indels: 30
0.62 0.14 0.24
Matches are distributed among these distances:
45 1 0.01
46 5 0.07
47 2 0.03
48 11 0.14
49 14 0.18
50 2 0.03
51 5 0.07
52 5 0.07
53 2 0.03
54 9 0.12
55 11 0.14
56 3 0.04
57 5 0.07
58 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (49 bp):
ATTCAATTCATTTTTCAATAACAAATATTCGATTTCACAATAGTCACTT
Found at i:111516662 original size:21 final size:21
Alignment explanation
Indices: 111516637--111516702 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
111516627 ATACATTTGT
111516637 CATAATTTAATTTATTTATTA
1 CATAATTTAATTTATTTATTA
* * *
111516658 CATAA--AAATCTACATTT-GT-
1 CATAATTTAAT-T-TATTTATTA
111516677 CATAATTTAATTTATTTATTA
1 CATAATTTAATTTATTTATTA
111516698 CATAA
1 CATAA
111516703 AAATCTTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
19 12 0.36
20 4 0.12
21 17 0.52
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (21 bp):
CATAATTTAATTTATTTATTA
Found at i:111516683 original size:40 final size:40
Alignment explanation
Indices: 111516628--111516708 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
111516618 TTTATAACCA
111516628 TACATTTGTCATAATTTAATTTATTTATTACATAAAAATC
1 TACATTTGTCATAATTTAATTTATTTATTACATAAAAATC
111516668 TACATTTGTCATAATTTAATTTATTTATTACATAAAAATC
1 TACATTTGTCATAATTTAATTTATTTATTACATAAAAATC
111516708 T
1 T
111516709 TATAATATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (40 bp):
TACATTTGTCATAATTTAATTTATTTATTACATAAAAATC
Found at i:111516725 original size:40 final size:40
Alignment explanation
Indices: 111516638--111516726 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
111516628 TACATTTGTC
* * *
111516638 ATAATTTAATTTATTTATTACATAAAAATCTACATTTGTC
1 ATAATTTAATTTATTTATTACATAAAAATCTACATATATA
*
111516678 ATAATTTAATTTATTTATTACATAAAAATCT-TATAATATA
1 ATAATTTAATTTATTTATTACATAAAAATCTACAT-ATATA
*
111516718 ATTATTTAA
1 ATAATTTAA
111516727 CTAATAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.05
40 41 0.95
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (40 bp):
ATAATTTAATTTATTTATTACATAAAAATCTACATATATA
Found at i:111521699 original size:13 final size:13
Alignment explanation
Indices: 111521681--111521710 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
111521671 CATGCATTTG
*
111521681 TTTATTTTATTAA
1 TTTATTTTACTAA
111521694 TTTATTTTACTAA
1 TTTATTTTACTAA
111521707 TTTA
1 TTTA
111521711 CAAAACTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTATTTTACTAA
Found at i:111523878 original size:18 final size:19
Alignment explanation
Indices: 111523839--111523877 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
111523829 CTCAAAAATA
*
111523839 TTTATGAAAATAGATTGAT
1 TTTATGAAAATAGATTAAT
111523858 TTTATGAAAA-AG-TTAAT
1 TTTATGAAAATAGATTAAT
111523875 TTT
1 TTT
111523878 TTTGGTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
19 10 0.53
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (19 bp):
TTTATGAAAATAGATTAAT
Found at i:111525940 original size:46 final size:46
Alignment explanation
Indices: 111525888--111526063 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
111525878 TGGTTGAGCA
111525888 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
111525934 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
111525979 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
111526027 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
111526064 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.06
46 59 0.55
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:111526044 original size:93 final size:93
Alignment explanation
Indices: 111525885--111526055 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
111525875 GGATGGTTGA
* * *
111525885 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
111525950 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
111525978 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
111526042 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
111526056 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 70 0.96
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:111530608 original size:35 final size:35
Alignment explanation
Indices: 111530528--111530624 Score: 115
Period size: 35 Copynumber: 2.8 Consensus size: 35
111530518 TTTCCTTATT
* *
111530528 GAAATACCATACCTACATTTCACAACTCGGTACGG
1 GAAATACCATACCTACGTTTCACAACTCAGTACGG
* * *
111530563 GAAATGCCATATCTACGTTTCACAACTCAGTA-TG
1 GAAATACCATACCTACGTTTCACAACTCAGTACGG
* *
111530597 GATGATACCATACCTATGTTTCACAACT
1 GA-AATACCATACCTACGTTTCACAACT
111530625 TTGCCATGGA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 3 0.06
35 49 0.94
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (35 bp):
GAAATACCATACCTACGTTTCACAACTCAGTACGG
Found at i:111538714 original size:18 final size:19
Alignment explanation
Indices: 111538673--111538714 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
111538663 AATAATATTT
*
111538673 AAATTAAATTGAAATTACG
1 AAATTAAATTGAAATGACG
111538692 AAATTAAA-T-AAATGACGG
1 AAATTAAATTGAAATGAC-G
111538710 AAATT
1 AAATT
111538715 GAGATGGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 7 0.33
19 8 0.38
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.29
Consensus pattern (19 bp):
AAATTAAATTGAAATGACG
Found at i:111539472 original size:10 final size:10
Alignment explanation
Indices: 111539423--111539470 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
111539413 TAAATTCTAA
111539423 AAAGATAAAT
1 AAAGATAAAT
* *
111539433 ACAA-TTAATT
1 A-AAGATAAAT
111539443 AAAGATAAAT
1 AAAGATAAAT
111539453 AAAGATAAAT
1 AAAGATAAAT
111539463 AAA-ATAAA
1 AAAGATAAA
111539471 ATCCTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
9 7 0.22
10 23 0.72
11 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:111539495 original size:27 final size:26
Alignment explanation
Indices: 111539465--111539526 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
111539455 AGATAAATAA
111539465 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
111539492 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
111539519 AATAAAAT
1 AATAAAAT
111539527 AGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:111541107 original size:25 final size:26
Alignment explanation
Indices: 111541079--111541135 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
111541069 GAATTTTATT
*
111541079 AATATATG-AAAAT-AATAAATAATAA
1 AATATAAGAAAAATAAATAAA-AATAA
111541104 AATAATAAGATAAAATAAATAAAAATAA
1 AAT-ATAAGA-AAAATAAATAAAAATAA
111541132 AATA
1 AATA
111541136 AAAATTGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
25 3 0.11
26 4 0.15
27 1 0.04
28 13 0.48
29 6 0.22
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (26 bp):
AATATAAGAAAAATAAATAAAAATAA
Found at i:111541137 original size:15 final size:14
Alignment explanation
Indices: 111541087--111541136 Score: 66
Period size: 15 Copynumber: 3.5 Consensus size: 14
111541077 TTAATATATG
111541087 AAAATAATAAATAAT
1 AAAATAATAAA-AAT
*
111541102 AAAATAAT-AAGAT
1 AAAATAATAAAAAT
111541115 AAAATAAATAAAAAT
1 AAAAT-AATAAAAAT
111541130 AAAATAA
1 AAAATAA
111541137 AAATTGGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 7 0.23
14 7 0.23
15 17 0.55
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (14 bp):
AAAATAATAAAAAT
Found at i:111544834 original size:20 final size:20
Alignment explanation
Indices: 111544811--111544858 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
111544801 TAAATTCTAA
*
111544811 AAAGATAAATACAA-TTAATT
1 AAAGATAAATA-AAGATAATT
111544831 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
111544851 AAA-ATAAA
1 AAAGATAAA
111544859 ATCTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:111544883 original size:27 final size:26
Alignment explanation
Indices: 111544853--111544914 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
111544843 AGATAATTAA
111544853 AATAAAATCTTAAAATTAAATAATCCT
1 AATAAAATCTTAAAATT-AATAATCCT
* * * *
111544880 AATAATTATGTTAATATTAATTATCCT
1 AATAA-AATCTTAAAATTAATAATCCT
111544907 AATAAAAT
1 AATAAAAT
111544915 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.39
Consensus pattern (26 bp):
AATAAAATCTTAAAATTAATAATCCT
Found at i:111546446 original size:24 final size:22
Alignment explanation
Indices: 111546417--111546467 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 22
111546407 AAGTAATAAA
111546417 ATTTAAAAATTACATAAAATTTTT
1 ATTTAAAAATTAC-TAAAA-TTTT
*
111546441 ATTT--AAATTACTCAAATTTT
1 ATTTAAAAATTACTAAAATTTT
111546461 ATTTAAA
1 ATTTAAA
111546468 TTTAAACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 8 0.33
21 4 0.17
22 8 0.33
24 4 0.17
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (22 bp):
ATTTAAAAATTACTAAAATTTT
Found at i:111546460 original size:20 final size:22
Alignment explanation
Indices: 111546423--111546469 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
111546413 TAAAATTTAA
111546423 AAATTACATAAAATTTTTATTT
1 AAATTACATAAAATTTTTATTT
*
111546445 AAATTAC-TCAAA-TTTTATTT
1 AAATTACATAAAATTTTTATTT
111546465 AAATT
1 AAATT
111546470 TAAACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 13 0.54
21 4 0.17
22 7 0.29
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (22 bp):
AAATTACATAAAATTTTTATTT
Found at i:111553233 original size:27 final size:27
Alignment explanation
Indices: 111553195--111553246 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
111553185 GTACGTGGTC
* *
111553195 GCTCCAAAGGGACGTCTGAGGGTAGTG
1 GCTCCAAAGGGACCTCTGAGCGTAGTG
111553222 GCTCCAAAGGGACCTCTGAGCGTAG
1 GCTCCAAAGGGACCTCTGAGCGTAG
111553247 AGCAAGGCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (27 bp):
GCTCCAAAGGGACCTCTGAGCGTAGTG
Found at i:111555110 original size:24 final size:24
Alignment explanation
Indices: 111555078--111555123 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
111555068 ACTTCCACTG
111555078 CTGTGGCAATA-GCAGCAGCTGCTT
1 CTGTGGCAA-AGGCAGCAGCTGCTT
* *
111555102 CTGTTGCAAAGGCTGCAGCTGC
1 CTGTGGCAAAGGCAGCAGCTGC
111555124 AGCTGCCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (24 bp):
CTGTGGCAAAGGCAGCAGCTGCTT
Found at i:111571993 original size:84 final size:84
Alignment explanation
Indices: 111571852--111572036 Score: 293
Period size: 84 Copynumber: 2.2 Consensus size: 84
111571842 AAAAAGAGTA
*
111571852 TATGGAAAATAGAGAATCAAATATGGGAAGTGAAAGAGAATAACATATATGAAAAATAGAGATAT
1 TATGGAAAATAGAGAATCAAATATGGGAAGTAAAAGAGAATAACATATATGAAAAATAGAGATAT
*
111571917 GAAAGGAAATTTAATATTT
66 GAAAGGAAATTGAATATTT
* *
111571936 TATGGAAAATAGATAATCAAATATGGGAAAG-AAAAGAGAATAACA-ATTATGTAAAATAGAGAT
1 TATGGAAAATAGAGAATCAAATATGGG-AAGTAAAAGAGAATAACATA-TATGAAAAATAGAGAT
111571999 ATGAAAGGAAATTGAATATTT
64 ATGAAAGGAAATTGAATATTT
*
111572020 TATGAAAAATAGAGAAT
1 TATGGAAAATAGAGAAT
111572037 TTGATACTCT
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 1 0.01
84 89 0.96
85 3 0.03
ACGTcount: A:0.54, C:0.02, G:0.19, T:0.25
Consensus pattern (84 bp):
TATGGAAAATAGAGAATCAAATATGGGAAGTAAAAGAGAATAACATATATGAAAAATAGAGATAT
GAAAGGAAATTGAATATTT
Found at i:111572029 original size:37 final size:37
Alignment explanation
Indices: 111571899--111572034 Score: 101
Period size: 37 Copynumber: 3.4 Consensus size: 37
111571889 GAATAACATA
*
111571899 TATGAAAAATAGAGATATGAAAGGAAATTTAATATTT
1 TATGAAAAATAGAGATATGAAAGGAAATTGAATATTT
* * * ** **
111571936 TATGGAAAATAGATAATCAAATATGGGAAAGAAAAGAGAATAACAAT
1 TAT-G-AAA-A-AT-A-GAGATAT--GAAAGGAAATTGAAT-A-TTT
*
111571983 TATGTAAAATAGAGATATGAAAGGAAATTGAATATTT
1 TATGAAAAATAGAGATATGAAAGGAAATTGAATATTT
111572020 TATGAAAAATAGAGA
1 TATGAAAAATAGAGA
111572035 ATTTGATACT
Statistics
Matches: 72, Mismatches: 17, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
37 18 0.25
38 2 0.03
39 15 0.21
40 1 0.01
41 7 0.10
42 2 0.03
43 7 0.10
44 1 0.01
45 13 0.18
46 2 0.03
47 4 0.06
ACGTcount: A:0.54, C:0.01, G:0.18, T:0.26
Consensus pattern (37 bp):
TATGAAAAATAGAGATATGAAAGGAAATTGAATATTT
Found at i:111572374 original size:19 final size:18
Alignment explanation
Indices: 111572341--111572379 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
111572331 ATTTCAACTG
111572341 TTTCTTTTCAACTTTTTT
1 TTTCTTTTCAACTTTTTT
*
111572359 TTTCTATTTCACCTTTTTT
1 TTTCT-TTTCAACTTTTTT
111572378 TT
1 TT
111572380 ATTAAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTCTTTTCAACTTTTTT
Found at i:111572853 original size:26 final size:27
Alignment explanation
Indices: 111572824--111572890 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
111572814 TTAGTTTGGC
*
111572824 AATGCTTTTGAAAAGTGCTGTGGAA-A
1 AATGCTTTTGAAAAGTACTGTGGAAGA
* * *
111572850 AATGCTTTTGAGAAGTACTTTTGAAGA
1 AATGCTTTTGAAAAGTACTGTGGAAGA
*
111572877 AGTGCTTTTGAAAA
1 AATGCTTTTGAAAA
111572891 ATTTGGTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (27 bp):
AATGCTTTTGAAAAGTACTGTGGAAGA
Found at i:111572879 original size:14 final size:14
Alignment explanation
Indices: 111572854--111572888 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
111572844 TGGAAAAATG
111572854 CTTTTG-AGAAGTA
1 CTTTTGAAGAAGTA
*
111572867 CTTTTGAAGAAGTG
1 CTTTTGAAGAAGTA
111572881 CTTTTGAA
1 CTTTTGAA
111572889 AAATTTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (14 bp):
CTTTTGAAGAAGTA
Found at i:111573530 original size:14 final size:14
Alignment explanation
Indices: 111573511--111573539 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
111573501 AATATGCAAG
111573511 TAAAGAAAACAGAC
1 TAAAGAAAACAGAC
111573525 TAAAGAAAACAGAC
1 TAAAGAAAACAGAC
111573539 T
1 T
111573540 CGTTCGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.14, G:0.14, T:0.10
Consensus pattern (14 bp):
TAAAGAAAACAGAC
Found at i:111574821 original size:21 final size:21
Alignment explanation
Indices: 111574778--111574817 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
111574768 CAGACAACGC
111574778 ATTCATGTATTAAAATATAAT
1 ATTCATGTATTAAAATATAAT
*
111574799 ATTCAT-TATTAATATATAA
1 ATTCATGTATTAAAATATAA
111574818 ATATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
ATTCATGTATTAAAATATAAT
Found at i:111582182 original size:16 final size:15
Alignment explanation
Indices: 111582161--111582232 Score: 72
Period size: 16 Copynumber: 4.5 Consensus size: 15
111582151 CTTTTTGTTT
111582161 ACTGTAATGGAATAGG
1 ACTGTAATGGAATA-G
*
111582177 ACTGTAATTGAATAG
1 ACTGTAATGGAATAG
*
111582192 AGCTGTAATGGAATAA
1 A-CTGTAATGGAATAG
* *
111582208 AGCTGTAGTGAAATAG
1 A-CTGTAATGGAATAG
111582224 AACTGTAAT
1 -ACTGTAAT
111582233 AAGTAATTCA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
15 2 0.04
16 44 0.94
17 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:111582214 original size:32 final size:32
Alignment explanation
Indices: 111582161--111582232 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
111582151 CTTTTTGTTT
* *
111582161 ACTGTAATGGAATAGGACTGTAATTG-AATAGA
1 ACTGTAATGGAATAAGACTGT-AGTGAAATAGA
*
111582193 GCTGTAATGGAATAA-AGCTGTAGTGAAATAGA
1 ACTGTAATGGAATAAGA-CTGTAGTGAAATAGA
111582225 ACTGTAAT
1 ACTGTAAT
111582233 AAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
31 4 0.12
32 30 0.88
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (32 bp):
ACTGTAATGGAATAAGACTGTAGTGAAATAGA
Found at i:111582272 original size:46 final size:44
Alignment explanation
Indices: 111582219--111582307 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
111582209 GCTGTAGTGA
*
111582219 AATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATGC
1 AATAGAACTGTAAT-AGT-ATTCAACTGTTCGGTTGAATGGAATGC
***
111582265 AATAGAACTGTAATAGTATTCTTGTGTTCGGTTGAATGGAATG
1 AATAGAACTGTAATAGTATTCAACTGTTCGGTTGAATGGAATG
111582308 ATGTTGTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 22 0.56
45 3 0.08
46 14 0.36
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.35
Consensus pattern (44 bp):
AATAGAACTGTAATAGTATTCAACTGTTCGGTTGAATGGAATGC
Found at i:111584461 original size:26 final size:26
Alignment explanation
Indices: 111584431--111584480 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
111584421 ATATATTCTA
111584431 AACTT-CTTATTAATTACTTTTAAATT
1 AACTTACTTATTAATTA-TTTTAAATT
* *
111584457 AACTTATTTATTATTTATTTTAAA
1 AACTTACTTATTAATTATTTTAAA
111584481 ACTATTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (26 bp):
AACTTACTTATTAATTATTTTAAATT
Found at i:111584575 original size:27 final size:26
Alignment explanation
Indices: 111584501--111584594 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 26
111584491 TATGTCATTC
* * * *
111584501 TTTAATTTGCTTTGTGTATTATTGAT
1 TTTAAATTGTTTTATGTATTATTCAT
* * ** *
111584527 TTTAAAATGCTTTATACATTATTTAT
1 TTTAAATTGTTTTATGTATTATTCAT
111584553 TTTAAACTTGTTTTATGTATTATTCAT
1 TTTAAA-TTGTTTTATGTATTATTCAT
111584580 TTTAAATTGTTTTAT
1 TTTAAATTGTTTTAT
111584595 TGTTTACTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 35 0.62
27 21 0.38
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.60
Consensus pattern (26 bp):
TTTAAATTGTTTTATGTATTATTCAT
Found at i:111587595 original size:32 final size:32
Alignment explanation
Indices: 111587554--111587619 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
111587544 TTGCAATTTA
*
111587554 TTTTATATTTTCCCTTGGCCTTTACATCTATC
1 TTTTATATTTGCCCTTGGCCTTTACATCTATC
*
111587586 TTTTATATTTGCCCTTGGTCTTTACATCTATC
1 TTTTATATTTGCCCTTGGCCTTTACATCTATC
111587618 TT
1 TT
111587620 GTCATCTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.55
Consensus pattern (32 bp):
TTTTATATTTGCCCTTGGCCTTTACATCTATC
Found at i:111587837 original size:12 final size:12
Alignment explanation
Indices: 111587820--111587846 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
111587810 TAGATTTATG
111587820 CAAAACAATACC
1 CAAAACAATACC
111587832 CAAAACAATACC
1 CAAAACAATACC
111587844 CAA
1 CAA
111587847 TAATTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.33, G:0.00, T:0.07
Consensus pattern (12 bp):
CAAAACAATACC
Found at i:111590885 original size:40 final size:40
Alignment explanation
Indices: 111590832--111590937 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
111590822 AAATAGGTGA
*
111590832 AAAAGAAGGAGAAGGGTGGAACGAAATGGGAATCAAACTG
1 AAAAGAAGGAGAAGGGTGGAACGAAATAGGAATCAAACTG
* * *
111590872 AAAAGAGGGAGAAGGGTGGAAAGAAATAGGAATCAGACTG
1 AAAAGAAGGAGAAGGGTGGAACGAAATAGGAATCAAACTG
* *
111590912 AAAAGAAGGAAAAGGGTAGAACGAAA
1 AAAAGAAGGAGAAGGGTGGAACGAAA
111590938 GAAGGAGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.51, C:0.06, G:0.35, T:0.08
Consensus pattern (40 bp):
AAAAGAAGGAGAAGGGTGGAACGAAATAGGAATCAAACTG
Found at i:111592492 original size:46 final size:46
Alignment explanation
Indices: 111592029--111592491 Score: 660
Period size: 46 Copynumber: 10.0 Consensus size: 46
111592019 TTATCTTTGA
* * * * * * *
111592029 CATGATGCCATAGTGTCATTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** ***
111592075 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
**
111592122 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * **
111592168 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
*
111592214 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
111592260 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
111592306 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
111592352 TAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
111592398 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
111592444 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
111592490 CA
1 CA
111592492 GAGAGCACAC
Statistics
Matches: 391, Mismatches: 23, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.01
46 344 0.88
47 43 0.11
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:111594661 original size:21 final size:20
Alignment explanation
Indices: 111594622--111594671 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
111594612 ATAATATAAT
111594622 TATTTAAT-TAATAAATATC
1 TATTTAATATAATAAATATC
*
111594641 TTTTATAATATAATAAATATC
1 TATT-TAATATAATAAATATC
111594662 TATTTAATAT
1 TATTTAATAT
111594672 CTAATACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 10 0.37
21 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTAATATAATAAATATC
Found at i:111604375 original size:12 final size:12
Alignment explanation
Indices: 111604358--111604382 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
111604348 TTGTTAATAG
111604358 CAGTTTACTTTC
1 CAGTTTACTTTC
111604370 CAGTTTACTTTC
1 CAGTTTACTTTC
111604382 C
1 C
111604383 TTCTCTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.08, T:0.48
Consensus pattern (12 bp):
CAGTTTACTTTC
Found at i:111613598 original size:46 final size:46
Alignment explanation
Indices: 111613545--111613718 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
111613535 TATTTGGGCA
*
111613545 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
111613591 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * * *
111613636 CATCAGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
111613684 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
111613719 AGGCGGGTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
45 1 0.01
46 59 0.56
47 25 0.24
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:111616708 original size:15 final size:15
Alignment explanation
Indices: 111616688--111616756 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
111616678 GTATCTTGGG
111616688 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
111616703 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
111616718 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
111616733 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
111616748 TTTCTTTAT
1 TTTCTTTAT
111616757 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:111616757 original size:30 final size:30
Alignment explanation
Indices: 111616679--111616758 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
111616669 CATAGTATCG
* * *
111616679 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
111616709 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
111616739 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
111616759 AGTTTTCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:111619208 original size:46 final size:46
Alignment explanation
Indices: 111619155--111619283 Score: 190
Period size: 46 Copynumber: 2.8 Consensus size: 46
111619145 TATTTGAGCA
*
111619155 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
*
111619201 TCCGAACTCGTTGAGTTGAGTCTGAA-TTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTC-CAAGTTCACTTATGGATGCGAACG
* *
111619247 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
111619284 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
45 3 0.04
46 70 0.93
47 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
Found at i:111625473 original size:23 final size:23
Alignment explanation
Indices: 111625443--111625529 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
111625433 GCTTTACTGA
* *
111625443 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
* *
111625466 TCAGGCACCTCGTGTGTTGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
111625487 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
111625509 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
111625530 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 34 0.64
22 2 0.04
23 17 0.32
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:111626428 original size:10 final size:9
Alignment explanation
Indices: 111626413--111626438 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
111626403 AAATTTTTGT
111626413 AAAAAAATA
1 AAAAAAATA
111626422 AAAAAAATA
1 AAAAAAATA
111626431 AAAAAAAT
1 AAAAAAAT
111626439 CTCTGAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAAATA
Found at i:111632835 original size:17 final size:19
Alignment explanation
Indices: 111632813--111632848 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
111632803 TATTTACATT
111632813 TCAT-AAAATT-TAAAAAA
1 TCATAAAAATTATAAAAAA
111632830 TCATAAAAATTATAAAAAA
1 TCATAAAAATTATAAAAAA
111632849 ATATTCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 6 0.35
19 7 0.41
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (19 bp):
TCATAAAAATTATAAAAAA
Found at i:111633606 original size:24 final size:24
Alignment explanation
Indices: 111633561--111633607 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
111633551 ATATTATATT
* *
111633561 TTTTTATTTTATATGTTCAATTAC
1 TTTTAATTTTATATATTCAATTAC
* *
111633585 TTTTAATTTTATTTATTTAATTA
1 TTTTAATTTTATATATTCAATTA
111633608 AATATTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (24 bp):
TTTTAATTTTATATATTCAATTAC
Found at i:111636978 original size:15 final size:15
Alignment explanation
Indices: 111636954--111636986 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
111636944 TGTCAGATAT
111636954 AAAAAA-AAAAGAAA
1 AAAAAAGAAAAGAAA
*
111636968 AGAAAAGAAAAGAAA
1 AAAAAAGAAAAGAAA
111636983 AAAA
1 AAAA
111636987 GAGTAAAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAGAAA
Found at i:111639716 original size:19 final size:20
Alignment explanation
Indices: 111639680--111639722 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
111639670 GTTATGCAAT
*
111639680 ATAATCAATAATTAAAATA-
1 ATAATCAATAACTAAAATAC
* *
111639699 ATAATTAATAACTGAAATAC
1 ATAATCAATAACTAAAATAC
111639719 ATAA
1 ATAA
111639723 CAAATAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.30
Consensus pattern (20 bp):
ATAATCAATAACTAAAATAC
Found at i:111643395 original size:8 final size:9
Alignment explanation
Indices: 111643378--111643428 Score: 57
Period size: 9 Copynumber: 5.2 Consensus size: 9
111643368 TATTGTTCTA
111643378 TAATTTTTT
1 TAATTTTTT
111643387 TAATTTTTT
1 TAATTTTTT
111643396 TAATTTTCTT
1 TAATTTT-TT
111643406 TATATATTTTT
1 TA-AT-TTTTT
*
111643417 TAGAATTTTT
1 TA-ATTTTTT
111643427 TA
1 TA
111643429 GAATTTTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
9 16 0.43
10 11 0.30
11 7 0.19
12 3 0.08
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (9 bp):
TAATTTTTT
Found at i:111643435 original size:9 final size:10
Alignment explanation
Indices: 111643411--111643454 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
111643401 TTCTTTATAT
111643411 ATTTTTTAGA
1 ATTTTTTAGA
111643421 ATTTTTTAGA
1 ATTTTTTAGA
111643431 ATTTTTATA-A
1 ATTTTT-TAGA
* *
111643441 ATATTTTAAA
1 ATTTTTTAGA
111643451 ATTT
1 ATTT
111643455 AAAAAGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 26 0.87
11 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (10 bp):
ATTTTTTAGA
Found at i:111643501 original size:20 final size:20
Alignment explanation
Indices: 111643456--111643493 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
111643446 TTAAAATTTA
*
111643456 AAAAGTATTTTGAATTTTTG
1 AAAATTATTTTGAATTTTTG
111643476 AAAATTATTTTG-ATTTTT
1 AAAATTATTTTGAATTTTT
111643494 TTTAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (20 bp):
AAAATTATTTTGAATTTTTG
Found at i:111645307 original size:79 final size:79
Alignment explanation
Indices: 111645216--111645394 Score: 286
Period size: 79 Copynumber: 2.3 Consensus size: 79
111645206 TTGACCTCTG
*
111645216 TAAACTCTCCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAATTAAGTTTAATC
1 TAAACTCACCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAATTAAGTTTAATC
*
111645281 ACAGTTGAGCTTTC
66 ACAGTTGAACTTTC
* * * * *
111645295 TAAACTCCCCCTATATAAATATAAATATTAGCTTAAATTTAATATTAAAGTAATTAAGTTTAATT
1 TAAACTCACCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAATTAAGTTTAATC
*
111645360 ATAGTTGAACTTTC
66 ACAGTTGAACTTTC
111645374 TAAACTCACCCTATATAAAGA
1 TAAACTCACCCTATATAAAGA
111645395 GTCTTGCGTC
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 91 1.00
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (79 bp):
TAAACTCACCCTATATAAAGATAAATATTAGATTAAATTTAATATTAAAATAATTAAGTTTAATC
ACAGTTGAACTTTC
Found at i:111650081 original size:42 final size:42
Alignment explanation
Indices: 111649945--111650094 Score: 167
Period size: 42 Copynumber: 3.6 Consensus size: 42
111649935 CCGCTAATGG
* * *
111649945 CCCCAAAAATGCCGCTAAAGGTCCTGACTTTTAGCGATGC-TT
1 CCCCAAAAACGCCGCTAAAGGTCATGA-TTTTAGCGACGCTTT
* * * *
111649987 CCCCAAAAAAGCCGCTAAAGGTCATGACTTTAGTGGCGCTTT
1 CCCCAAAAACGCCGCTAAAGGTCATGATTTTAGCGACGCTTT
* *
111650029 CCCCACAAACGCCGCTAAAGGTCATGTTTTTAGCGACGCTTT
1 CCCCAAAAACGCCGCTAAAGGTCATGATTTTAGCGACGCTTT
** * *
111650071 CCTTAAAAACGCCACTAAAAGTCA
1 CCCCAAAAACGCCGCTAAAGGTCA
111650095 CCACTATCCC
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
41 8 0.09
42 82 0.91
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (42 bp):
CCCCAAAAACGCCGCTAAAGGTCATGATTTTAGCGACGCTTT
Found at i:111654786 original size:7 final size:7
Alignment explanation
Indices: 111654751--111654829 Score: 68
Period size: 7 Copynumber: 11.0 Consensus size: 7
111654741 ATATGGACAA
*
111654751 AAATATT
1 AAATTTT
*
111654758 AAATATT
1 AAATTTT
*
111654765 AAATATT
1 AAATTTT
111654772 AAATTTTT
1 AAA-TTTT
*
111654780 AAGTTTT
1 AAATTTT
*
111654787 AAGTTTTT
1 AA-ATTTT
* *
111654795 TATTTTT
1 AAATTTT
*
111654802 AATTTTT
1 AAATTTT
111654809 AAATTTT
1 AAATTTT
111654816 AAATTTT
1 AAATTTT
111654823 AAATTTT
1 AAATTTT
111654830 TTTGAAGATT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
7 54 0.84
8 10 0.16
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (7 bp):
AAATTTT
Found at i:111654788 original size:22 final size:22
Alignment explanation
Indices: 111654763--111654822 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
111654753 ATATTAAATA
*
111654763 TTAAATATTAAATTTTTAAGTT
1 TTAAATTTTAAATTTTTAAGTT
* ** *
111654785 TTAAGTTTTTTATTTTTAATTT
1 TTAAATTTTAAATTTTTAAGTT
111654807 TTAAATTTTAAATTTT
1 TTAAATTTTAAATTTT
111654823 AAATTTTTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (22 bp):
TTAAATTTTAAATTTTTAAGTT
Found at i:111654830 original size:15 final size:15
Alignment explanation
Indices: 111654763--111654829 Score: 75
Period size: 14 Copynumber: 4.6 Consensus size: 15
111654753 ATATTAAATA
*
111654763 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
* *
111654778 TTAAGTTTTAAGTTT
1 TTAAATTTTAAATTT
* *
111654793 TT-TATTTTTAATTT
1 TTAAATTTTAAATTT
111654807 TTAAATTTTAAA-TT
1 TTAAATTTTAAATTT
111654821 TTAAATTTT
1 TTAAATTTT
111654830 TTTGAAGATT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
14 21 0.50
15 21 0.50
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:111654830 original size:22 final size:22
Alignment explanation
Indices: 111654764--111654829 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
111654754 TATTAAATAT
* *
111654764 TAAATATTAAATTTTTAAGTTT
1 TAAATTTTAAATTTTTAAATTT
* ** *
111654786 TAAGTTTTTTATTTTTAATTTT
1 TAAATTTTAAATTTTTAAATTT
111654808 TAAATTTTAAA-TTTTAAATTT
1 TAAATTTTAAATTTTTAAATTT
111654829 T
1 T
111654830 TTTGAAGATT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 10 0.29
22 25 0.71
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (22 bp):
TAAATTTTAAATTTTTAAATTT
Found at i:111654849 original size:9 final size:9
Alignment explanation
Indices: 111654797--111654861 Score: 52
Period size: 9 Copynumber: 7.6 Consensus size: 9
111654787 AAGTTTTTTA
111654797 TTTT-TAAT
1 TTTTATAAT
111654805 TTTTA-AA-
1 TTTTATAAT
111654812 TTTTA-AA-
1 TTTTATAAT
111654819 TTTTA-AAT
1 TTTTATAAT
*
111654827 TTTTTTGAAGAT
1 TTTTAT--A-AT
111654839 TTTTATAAT
1 TTTTATAAT
111654848 TTTTATAAT
1 TTTTATAAT
111654857 TTTTA
1 TTTTA
111654862 ACAGAAATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
7 14 0.29
8 10 0.20
9 16 0.33
10 1 0.02
11 1 0.02
12 7 0.14
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:111655616 original size:14 final size:15
Alignment explanation
Indices: 111655587--111655619 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
111655577 CTTAACCCAT
*
111655587 AACCCCTAAGCCTTA
1 AACCCCTAACCCTTA
111655602 AACCCC-AACCCTTA
1 AACCCCTAACCCTTA
111655616 AACC
1 AACC
111655620 ATAATCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.45, G:0.03, T:0.15
Consensus pattern (15 bp):
AACCCCTAACCCTTA
Found at i:111655637 original size:15 final size:14
Alignment explanation
Indices: 111655614--111655648 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
111655604 CCCCAACCCT
*
111655614 TAAACCATAATCCC
1 TAAACCATAATCCA
111655628 TAAACTCATAATCCA
1 TAAAC-CATAATCCA
111655643 TAAACC
1 TAAACC
111655649 TTAAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:111655684 original size:7 final size:7
Alignment explanation
Indices: 111655672--111655711 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
111655662 ATATACACTT
111655672 TAAACCC
1 TAAACCC
*
111655679 TAAACCA
1 TAAACCC
*
111655686 TATACCC
1 TAAACCC
*
111655693 TAAACCA
1 TAAACCC
111655700 TAAACCC
1 TAAACCC
111655707 TAAAC
1 TAAAC
111655712 TATAATGATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:111655694 original size:14 final size:14
Alignment explanation
Indices: 111655672--111655716 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
111655662 ATATACACTT
111655672 TAAACCCTAAACCA
1 TAAACCCTAAACCA
*
111655686 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
111655700 TAAACCCTAAACTA
1 TAAACCCTAAACCA
111655714 TAA
1 TAA
111655717 TGATAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:111655888 original size:21 final size:21
Alignment explanation
Indices: 111655862--111655906 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
111655852 CTAAAACATG
111655862 AACCCTGAA-CCCTGAACCCCT
1 AACCCTGAACCCCT-AACCCCT
*
111655883 AACCCTTAACCCCTAACCCCT
1 AACCCTGAACCCCTAACCCCT
111655904 AAC
1 AAC
111655907 ACTTAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.31, C:0.49, G:0.04, T:0.16
Consensus pattern (21 bp):
AACCCTGAACCCCTAACCCCT
Found at i:111655899 original size:7 final size:7
Alignment explanation
Indices: 111655871--111655906 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
111655861 GAACCCTGAA
111655871 CCCTGAAC
1 CCCT-AAC
111655879 CCCTAAC
1 CCCTAAC
*
111655886 CCTTAAC
1 CCCTAAC
111655893 CCCTAAC
1 CCCTAAC
111655900 CCCTAAC
1 CCCTAAC
111655907 ACTTAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.28, C:0.53, G:0.03, T:0.17
Consensus pattern (7 bp):
CCCTAAC
Found at i:111655911 original size:21 final size:22
Alignment explanation
Indices: 111655871--111655912 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
111655861 GAACCCTGAA
*
111655871 CCCTGAACCCCTAACCCTTAAC
1 CCCTGAACCCCTAACACTTAAC
111655893 CCCT-AACCCCTAACACTTAA
1 CCCTGAACCCCTAACACTTAA
111655913 ACCTTAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.31, C:0.48, G:0.02, T:0.19
Consensus pattern (22 bp):
CCCTGAACCCCTAACACTTAAC
Found at i:111655917 original size:28 final size:28
Alignment explanation
Indices: 111655886--111655943 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
111655876 AACCCCTAAC
*
111655886 CCTTAACCCCT-AACCCCTAACACTTAAA
1 CCTTAAACCCTAAACCCC-AACACTTAAA
* *
111655914 CCTTAAACCTTAAACCCCAACCCTTAAA
1 CCTTAAACCCTAAACCCCAACACTTAAA
111655942 CC
1 CC
111655944 ACCATTAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (28 bp):
CCTTAAACCCTAAACCCCAACACTTAAA
Found at i:111661379 original size:135 final size:138
Alignment explanation
Indices: 111661112--111661388 Score: 479
Period size: 135 Copynumber: 2.0 Consensus size: 138
111661102 ACATAGATAA
* * *
111661112 AATTAATATATTAATTTGATTCATACAAGATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
111661177 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTATTTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTATTTTGGA
111661242 AAGAATAT
131 AAGAATAT
*
111661250 AATTAATATATGAATTTGATTCATACAAAATGTTAATTGTATATA-TTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* *
111661314 TAAACAGTTGTATTAATTAA-TT-GGTCAAAATATAAAAGATATGGAAATTAATATTATTTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTATTTTGGA
111661377 AAGAATAT
131 AAGAATAT
111661385 AATT
1 AATT
111661389 CATTTTTTCT
Statistics
Matches: 133, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
135 52 0.39
136 2 0.02
137 37 0.28
138 42 0.32
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTATTTTGGA
AAGAATAT
Found at i:111661496 original size:74 final size:76
Alignment explanation
Indices: 111661364--111661510 Score: 228
Period size: 75 Copynumber: 2.0 Consensus size: 76
111661354 ATGGAAATTA
*
111661364 ATATTATTTTGGAAAGAATATAATTCATTTTTTCTAACTTTTCATTTGTCTTCTCTATTAAT-AG
1 ATATTATTTTGGAAAGAATATAATTCACTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAG
111661428 GGAATAATGAT
66 GGAATAATGAT
* *
111661439 ATATTCTTTTGGAAATAATATAATTC-CTTTTTCTAAC-TTTCAATTTGTCTTCTCTATTAATAA
1 ATATTATTTTGGAAAGAATATAATTCACTTTTTCTAACTTTTC-ATTTGTCTTCTCTATTAATAA
*
111661502 TGGAATAAT
65 GGGAATAAT
111661511 CTTGGTTTTC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
73 4 0.06
74 29 0.44
75 33 0.50
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (76 bp):
ATATTATTTTGGAAAGAATATAATTCACTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAG
GGAATAATGAT
Found at i:111671508 original size:32 final size:32
Alignment explanation
Indices: 111671466--111671532 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
111671456 GAGGTAGGTC
111671466 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
1 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
* *
111671498 TTGATATGTCAATTCGTTTGCTGAAGCATTTT
1 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
111671530 TTG
1 TTG
111671533 CAGAATGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.46
Consensus pattern (32 bp):
TTGAGATGTCAATTCGTTTACTGAAGCATTTT
Found at i:111671734 original size:3 final size:3
Alignment explanation
Indices: 111671719--111671762 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
111671709 TATTGATCTT
* *
111671719 TTG TTG TTA TTG TTG TTG TTG TTG TTG TTG TTG TTG TTT TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
111671763 ATGATACGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.27, T:0.70
Consensus pattern (3 bp):
TTG
Found at i:111674204 original size:22 final size:22
Alignment explanation
Indices: 111674179--111674222 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
111674169 CTAATTAATC
*
111674179 ATAT-AATATGTATATTTTATCA
1 ATATGAATA-GTATATTGTATCA
*
111674201 ATATGAATAGTTTATTGTATCA
1 ATATGAATAGTATATTGTATCA
111674223 GCCTATACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (22 bp):
ATATGAATAGTATATTGTATCA
Found at i:111675593 original size:20 final size:20
Alignment explanation
Indices: 111675556--111675593 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
111675546 ATTGCACAAG
**
111675556 AATAAAATAAAAGGGATAAA
1 AATAAAATAAAAAAGATAAA
111675576 AATAAAATAAAAAAGATA
1 AATAAAATAAAAAAGATA
111675594 CAGGACGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.16
Consensus pattern (20 bp):
AATAAAATAAAAAAGATAAA
Found at i:111680876 original size:27 final size:27
Alignment explanation
Indices: 111680844--111680900 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
111680834 TAAACATAAG
*
111680844 TAAGAACATAAACATGAATGCATATGA
1 TAAGAACATAAACATGAATACATATGA
*
111680871 TAAGAATATAAACATGAATACATATGA
1 TAAGAACATAAACATGAATACATATGA
111680898 TAA
1 TAA
111680901 AATATCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (27 bp):
TAAGAACATAAACATGAATACATATGA
Found at i:111680970 original size:81 final size:81
Alignment explanation
Indices: 111680871--111681019 Score: 289
Period size: 81 Copynumber: 1.8 Consensus size: 81
111680861 ATGCATATGA
111680871 TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
1 TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
111680936 AATGCTTAAACAAGAG
66 AATGCTTAAACAAGAG
*
111680952 TAAGAATATAAACATGAATGCATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
1 TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
111681017 AAT
66 AAT
111681020 ACTTGAATTG
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.34
Consensus pattern (81 bp):
TAAGAATATAAACATGAATACATATGATAAAATATCATATTAGATGTTAGAATTGGCTTGGATTT
AATGCTTAAACAAGAG
Found at i:111684648 original size:138 final size:138
Alignment explanation
Indices: 111684474--111684753 Score: 479
Period size: 138 Copynumber: 2.0 Consensus size: 138
111684464 ACATAGATAA
* * *
111684474 AATTAATATATTAATTTGATTCATACAAGATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
111684539 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
*
111684604 AGGAATAT
131 AAGAATAT
*
111684612 AATTAATATATGAATTTGATTCATGCAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * *
111684677 TAAACAGTTGTATTAATTAATTTCGGTCAAAATCTAAAAGATATGGAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
111684742 AAGAATAT
131 AAGAATAT
111684750 AATT
1 AATT
111684754 CATTTTTTCT
Statistics
Matches: 133, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 133 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
AAGAATAT
Found at i:111684852 original size:75 final size:76
Alignment explanation
Indices: 111684729--111684875 Score: 260
Period size: 75 Copynumber: 1.9 Consensus size: 76
111684719 ATGGAAATTA
*
111684729 ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCCATTTGTCTTCTCTATTAAT-AG
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCAATTTGTCTTCTCTATTAATAAG
111684793 GGAATAACGAT
66 GGAATAACGAT
* *
111684804 ATATTCTTTTGGAGAGAATATAATTCCTTTTTTCTAACTTTCAATTTGTCTTCTCTATTAATAAG
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCAATTTGTCTTCTCTATTAATAAG
111684869 GGAATAA
66 GGAATAA
111684876 TCTTGATTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
75 59 0.87
76 9 0.13
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.46
Consensus pattern (76 bp):
ATATTCTTTTGGAAAGAATATAATTCATTTTTTCTAACTTTCAATTTGTCTTCTCTATTAATAAG
GGAATAACGAT
Found at i:111690593 original size:24 final size:25
Alignment explanation
Indices: 111690537--111690593 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
111690527 TAAGTTTACA
* *
111690537 TATTACAA-ATAAAAATAATTATATT
1 TATT-CAATATAAAAATAATTAGATG
*
111690562 TATCCAATATAAAAATAATT-GATG
1 TATTCAATATAAAAATAATTAGATG
111690586 TATTCAAT
1 TATTCAAT
111690594 TCATTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (25 bp):
TATTCAATATAAAAATAATTAGATG
Found at i:111700563 original size:27 final size:27
Alignment explanation
Indices: 111700533--111700586 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
111700523 AGGTTGAGAG
*
111700533 TTCGAG-GTTCAAGGTTCAAGCTTTGAA
1 TTCGAGAG-TCAAGGTTCAAGATTTGAA
111700560 TTCGAGAGTCAAGGTTCAAGATTTGAA
1 TTCGAGAGTCAAGGTTCAAGATTTGAA
111700587 CCCTAAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (27 bp):
TTCGAGAGTCAAGGTTCAAGATTTGAA
Found at i:111708720 original size:17 final size:17
Alignment explanation
Indices: 111708677--111708710 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
111708667 AAATACTATC
111708677 TAAA-TAAATATTAAAT
1 TAAATTAAATATTAAAT
111708693 TAAATTAAATATTAAAT
1 TAAATTAAATATTAAAT
111708710 T
1 T
111708711 TATTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTAAATATTAAAT
Found at i:111711811 original size:14 final size:15
Alignment explanation
Indices: 111711780--111711844 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
111711770 TTACAATTCA
111711780 TTTGTTTTCTTC-CT-
1 TTTGTTTT-TTCTCTG
111711794 TTTGTTTTTTCT-TG
1 TTTGTTTTTTCTCTG
*
111711808 TTTGTTGTTTT-TCTC
1 TTTGTT-TTTTCTCTG
111711823 TTTGTTTGTTTCTCTG
1 TTTGTTT-TTTCTCTG
111711839 -TTGTTT
1 TTTGTTT
111711845 GTATTGCTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
13 4 0.09
14 16 0.37
15 20 0.47
16 3 0.07
ACGTcount: A:0.00, C:0.12, G:0.14, T:0.74
Consensus pattern (15 bp):
TTTGTTTTTTCTCTG
Done.