Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 337 of 373
Found at i:112890087 original size:11 final size:11
Alignment explanation
Indices: 112890053--112890097 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
112890043 AATTTTATAG
112890053 TTTTTA-AATT
1 TTTTTATAATT
112890063 TTGTTTATAA--
1 TT-TTTATAATT
112890073 TTTTTATAATT
1 TTTTTATAATT
*
112890084 TTTTAATAATT
1 TTTTTATAATT
112890095 TTT
1 TTT
112890098 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 7 0.23
10 4 0.13
11 17 0.57
12 2 0.07
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:112890102 original size:8 final size:9
Alignment explanation
Indices: 112890026--112890104 Score: 76
Period size: 8 Copynumber: 8.7 Consensus size: 9
112890016 TTTTTAATAA
112890026 AATTTTTAT
1 AATTTTTAT
112890035 AA-TTTTAT
1 AATTTTTAT
112890043 AA-TTTTAT
1 AATTTTTAT
*
112890051 AGTTTTTA-
1 AATTTTTAT
112890059 AATTTTGTTTAT
1 AA--TT-TTTAT
112890071 AATTTTTAT
1 AATTTTTAT
112890080 AATTTTTTAAT
1 AA-TTTTT-AT
112890091 AATTTTTA-
1 AATTTTTAT
112890099 AATTTT
1 AATTTT
112890105 AAAAGGGCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
8 22 0.36
9 15 0.25
10 14 0.23
11 8 0.13
12 2 0.03
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (9 bp):
AATTTTTAT
Found at i:112890677 original size:22 final size:22
Alignment explanation
Indices: 112890627--112890677 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
112890617 TTGATGTTTG
* *
112890627 TTGTTATTTTGCTACCATTTTG
1 TTGTTATATTGCTACCATTTTA
* * *
112890649 CTATTATATTGCTACTATTTTA
1 TTGTTATATTGCTACCATTTTA
112890671 TTGTTAT
1 TTGTTAT
112890678 TATTTAAATA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.59
Consensus pattern (22 bp):
TTGTTATATTGCTACCATTTTA
Found at i:112890979 original size:24 final size:25
Alignment explanation
Indices: 112890925--112890983 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
112890915 GTTTTGCCCC
112890925 GTTTTTTAAGGTTAGGGTTTTAAAT
1 GTTTTTTAAGGTTAGGGTTTTAAAT
* * *
112890950 -TATTTTAGGGTTAGGGTTTT-AGT
1 GTTTTTTAAGGTTAGGGTTTTAAAT
112890973 GTTTTTTAAGG
1 GTTTTTTAAGG
112890984 AAAAATTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 2 0.07
24 26 0.93
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (25 bp):
GTTTTTTAAGGTTAGGGTTTTAAAT
Found at i:112891007 original size:26 final size:26
Alignment explanation
Indices: 112890978--112891027 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
112890968 TTAGTGTTTT
*
112890978 TTAAGGAAAAATTAATTTAATTAAAG
1 TTAAGGAAAAATTAATTAAATTAAAG
***
112891004 TTAAGGGTTAATTAATTAAATTAA
1 TTAAGGAAAAATTAATTAAATTAA
112891028 CTATGAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (26 bp):
TTAAGGAAAAATTAATTAAATTAAAG
Found at i:112891086 original size:16 final size:17
Alignment explanation
Indices: 112891054--112891087 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
112891044 ATTAATTAAA
*
112891054 TTAGGGTTTATGGTTTT
1 TTAGGGTTTAAGGTTTT
112891071 TTAGGG-TTAAGGTTTT
1 TTAGGGTTTAAGGTTTT
112891087 T
1 T
112891088 GATTGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (17 bp):
TTAGGGTTTAAGGTTTT
Found at i:112891118 original size:23 final size:23
Alignment explanation
Indices: 112891053--112891118 Score: 55
Period size: 24 Copynumber: 2.8 Consensus size: 23
112891043 AATTAATTAA
112891053 ATTAGGG-TTTA-TGGTTTTTTAGG
1 ATTAGGGTTTTAGTGG--TTTTAGG
* * * *
112891076 GTTAAGGTTTTTGATTGTTTTAGG
1 ATTAGGGTTTTAG-TGGTTTTAGG
112891100 ATTAGGGTTTTAGTGGTTT
1 ATTAGGGTTTTAGTGGTTT
112891119 AGGGTTTTAG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
23 10 0.31
24 20 0.62
26 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (23 bp):
ATTAGGGTTTTAGTGGTTTTAGG
Found at i:112891274 original size:156 final size:158
Alignment explanation
Indices: 112890952--112891345 Score: 604
Period size: 156 Copynumber: 2.5 Consensus size: 158
112890942 TTTTAAATTA
* *
112890952 TTTTAG-GG-TTAGGGTTTTAGTGTTTTTTAA-GGAAAAATTAATTTAATTAAAGTT-AAGGGTT
1 TTTTAGTGGTTTAGGGTTTTAGTGTTTTTTAAGGGAAAAATTAAATTAATTAGAGTTGAA-GGTT
* ** *
112891013 AATTAATTAAATTAACTATGAAATTAAAAAAATTAATTAAATTAGGGTTTATGGTTTTTTAGGGT
65 AATTAATTAAATTAACTATGAAATTAAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTTAAGGT
112891078 TAAGGTTTTTGATTGTTTTAGGATTAGGG
130 TAAGGTTTTTGATTGTTTTAGGATTAGGG
** * *
112891107 TTTTAGTGGTTTAGGGTTTTAGTGTTTTTTAAGGGAAATTTTAACTTAATTAGAGTTGAAGATTA
1 TTTTAGTGGTTTAGGGTTTTAGTGTTTTTTAAGGGAAAAATTAAATTAATTAGAGTTGAAGGTTA
*
112891172 ATTAATTAAATTAACTATGAAATT-TAAAAATCAATTAAATTAGGGTTTAAAG-TTTTTAAGGTT
66 ATTAATTAAATTAACTATGAAATTAAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTTAAGGTT
* *
112891235 AGGGTTTTTTATTGTTTTAGGATTAGGG
131 AAGGTTTTTGATTGTTTTAGGATTAGGG
*
112891263 TTTTAGTGGTTTAGGGTTTTAGTG-TTTTTAAGGGAAAAATTAAATTAATTAGAGTTGATGGTTA
1 TTTTAGTGGTTTAGGGTTTTAGTGTTTTTTAAGGGAAAAATTAAATTAATTAGAGTTGAAGGTTA
112891327 ATTAATTAAATTAACTATG
66 ATTAATTAAATTAACTATG
112891346 TCTGCCCCCA
Statistics
Matches: 218, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
155 60 0.28
156 62 0.28
157 46 0.21
158 48 0.22
159 2 0.01
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (158 bp):
TTTTAGTGGTTTAGGGTTTTAGTGTTTTTTAAGGGAAAAATTAAATTAATTAGAGTTGAAGGTTA
ATTAATTAAATTAACTATGAAATTAAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTTAAGGTT
AAGGTTTTTGATTGTTTTAGGATTAGGG
Found at i:112892511 original size:9 final size:9
Alignment explanation
Indices: 112892488--112892517 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
112892478 ATTTATATTT
112892488 TATTAAAAA
1 TATTAAAAA
112892497 TA-TAAAAA
1 TATTAAAAA
112892505 TATTAAAAA
1 TATTAAAAA
112892514 TATT
1 TATT
112892518 GCCGTAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TATTAAAAA
Found at i:112893092 original size:18 final size:18
Alignment explanation
Indices: 112893066--112893108 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
112893056 GACTAGGAAA
* *
112893066 AGGAAACATAAAAGGGTT
1 AGGATACATAAAAGGGCT
*
112893084 AGGATACATATAAGGGCT
1 AGGATACATAAAAGGGCT
112893102 AGGATAC
1 AGGATAC
112893109 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:112893740 original size:7 final size:7
Alignment explanation
Indices: 112893725--112893756 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
112893715 TTATATAGGT
112893725 AATACTA
1 AATACTA
*
112893732 AATAATA
1 AATACTA
112893739 AATACTA
1 AATACTA
112893746 AATACTA
1 AATACTA
112893753 AATA
1 AATA
112893757 AGAAACGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:112894945 original size:21 final size:22
Alignment explanation
Indices: 112894903--112894949 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
112894893 ACACAGCTTT
*
112894903 TTTG-CAAAAATTAGAGACAAA
1 TTTGACAAAAATTAGAAACAAA
*
112894924 TTTGACAAAAATT-GAAATAAA
1 TTTGACAAAAATTAGAAACAAA
112894945 TTTGA
1 TTTGA
112894950 GAGAATTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (22 bp):
TTTGACAAAAATTAGAAACAAA
Found at i:112895163 original size:24 final size:24
Alignment explanation
Indices: 112895131--112895186 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
112895121 CGCCTTCAAG
112895131 GAAGCGCTTTGTGCTGAGGTGGAC
1 GAAGCGCTTTGTGCTGAGGTGGAC
112895155 GAAGCGCTTTGTGCTGAGGTGGAC
1 GAAGCGCTTTGTGCTGAGGTGGAC
*
112895179 AAAGCGCT
1 GAAGCGCT
112895187 CCCCCAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.23
Consensus pattern (24 bp):
GAAGCGCTTTGTGCTGAGGTGGAC
Found at i:112900032 original size:40 final size:40
Alignment explanation
Indices: 112899976--112900058 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
112899966 ACAAATCTAA
* * *
112899976 CAAGTAAGTTCGTAAATGTTTTTATTTAATATTTACGAGT
1 CAAGTAAGTTCATAAATATTATTATTTAATATTTACGAGT
112900016 CAAGTAAGTTCATAAATATTATTATTTAATATTTACGAGT
1 CAAGTAAGTTCATAAATATTATTATTTAATATTTACGAGT
112900056 CAA
1 CAA
112900059 ATATAGTGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.42
Consensus pattern (40 bp):
CAAGTAAGTTCATAAATATTATTATTTAATATTTACGAGT
Found at i:112900210 original size:12 final size:11
Alignment explanation
Indices: 112900194--112900227 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
112900184 AACCGAGCCA
112900194 TAAATATTTTT
1 TAAATATTTTT
112900205 TAAAATATTTTT
1 T-AAATATTTTT
112900217 TAAATATTTTT
1 TAAATATTTTT
112900228 AGAGTGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TAAATATTTTT
Found at i:112901937 original size:79 final size:79
Alignment explanation
Indices: 112901804--112901964 Score: 277
Period size: 79 Copynumber: 2.0 Consensus size: 79
112901794 GTAAATTTGA
**
112901804 ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTATGAAATCCACTTATGTT
1 ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTAAAAAATCCACTTATGTT
112901869 ATAAATGAACTTAT
66 ATAAATGAACTTAT
* * *
112901883 ATGGTTTATAATTTTATGAAAAGGTTTATGAATATGTGATGTGTCTTAAAAAATCCACTTATGTT
1 ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTAAAAAATCCACTTATGTT
112901948 ATAAATGAACTTAT
66 ATAAATGAACTTAT
112901962 ATG
1 ATG
112901965 AGATGTTGAT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (79 bp):
ATGGTTTATAATCTTATGAAAAGGTTGATGAATATGTGACGTGTCTTAAAAAATCCACTTATGTT
ATAAATGAACTTAT
Found at i:112903485 original size:7 final size:7
Alignment explanation
Indices: 112903455--112903490 Score: 51
Period size: 6 Copynumber: 5.6 Consensus size: 7
112903445 TAGAGTTTTT
112903455 GGTTT-A
1 GGTTTGA
112903461 GGTTTG-
1 GGTTTGA
112903467 GGTTTG-
1 GGTTTGA
112903473 GGTTTGA
1 GGTTTGA
112903480 GGTTTGA
1 GGTTTGA
112903487 GGTT
1 GGTT
112903491 CAAGGTCTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.61
7 11 0.39
ACGTcount: A:0.08, C:0.00, G:0.44, T:0.47
Consensus pattern (7 bp):
GGTTTGA
Found at i:112904760 original size:16 final size:16
Alignment explanation
Indices: 112904739--112904806 Score: 91
Period size: 16 Copynumber: 4.2 Consensus size: 16
112904729 TTTGGTTCGC
*
112904739 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
**
112904755 TGTATTGGATTAGACA
1 TGTATTGGATTAGAGG
*
112904771 TGTAGTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
112904787 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
112904803 TGTA
1 TGTA
112904807 ATAGCAAATC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.29, C:0.01, G:0.34, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:112905063 original size:18 final size:17
Alignment explanation
Indices: 112905042--112905076 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
112905032 TTATTATTAA
*
112905042 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
112905060 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
112905077 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:112905130 original size:157 final size:157
Alignment explanation
Indices: 112904929--112905241 Score: 581
Period size: 157 Copynumber: 2.0 Consensus size: 157
112904919 TAGAATACCC
*
112904929 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
112904994 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
112905059 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
112905086 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAATTTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
112905151 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
112905216 TATATAATTTAATAAAATTCTTAATA
131 TATATAATTTAATAAAATTCTTAATA
112905242 TAGATAATTT
Statistics
Matches: 151, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 151 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:112905216 original size:16 final size:16
Alignment explanation
Indices: 112905179--112905220 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
112905169 TTAATCATAT
*
112905179 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
112905195 TT-AAATATATTATAA
1 TTAAAATATATTATAA
112905210 TTAAAATATAT
1 TTAAAATATAT
112905221 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:112905227 original size:14 final size:15
Alignment explanation
Indices: 112905188--112905229 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
112905178 TTTAAACATA
*
112905188 ATTATTATTAAATAT
1 ATTATAATTAAATAT
112905203 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
112905217 A-TATAATTTAATA
1 ATTATAATTAAATA
112905230 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:112905260 original size:26 final size:26
Alignment explanation
Indices: 112905209--112905267 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
112905199 ATATATTATA
* * *
112905209 ATTAAAATATATAATTTAATAAAATT
1 ATTAATATAGATAATTTAACAAAATT
* *
112905235 CTTAATATAGATAATTTAACATAATT
1 ATTAATATAGATAATTTAACAAAATT
112905261 ATTAATA
1 ATTAATA
112905268 ATCTTATGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (26 bp):
ATTAATATAGATAATTTAACAAAATT
Found at i:112910001 original size:40 final size:40
Alignment explanation
Indices: 112909918--112910140 Score: 166
Period size: 40 Copynumber: 5.6 Consensus size: 40
112909908 TTGAATGCTG
* * *
112909918 TCCGGACTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-AATAAA
* * *
112909958 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATAATAAA
** * * *
112909998 TCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
** * **
112910038 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
** * * * *
112910078 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* * *
112910117 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
112910141 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
39 35 0.22
40 115 0.71
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
Found at i:112910122 original size:39 final size:40
Alignment explanation
Indices: 112909971--112910140 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
112909961 GGACTAAGAT
* * *
112909971 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
112910011 CCGAAGGCATTCATGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
112910051 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
112910091 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
112910130 CCGAAGGCATT
1 CCGAAGGCATT
112910141 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:112910160 original size:79 final size:80
Alignment explanation
Indices: 112909993--112910175 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
112909983 GTGCGAGATA
* * *
112909993 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
112910058 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
112910073 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
112910137 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* * *
112910152 CTATATCC-GGTTAAATCCTGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
112910176 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 13 0.15
79 45 0.53
80 27 0.32
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:112918006 original size:39 final size:40
Alignment explanation
Indices: 112917802--112918024 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
112917792 TTGAATGCTG
* * * * * *
112917802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
112917842 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
112917882 TCCGGGTTAAGTCCCGAAGGGATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
112917922 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
112917962 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
112918001 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
112918025 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:112918044 original size:79 final size:80
Alignment explanation
Indices: 112917877--112918059 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
112917867 GTGCGAGATA
* * * *
112917877 CTAAATCCGGGTTAAGTCCCGAAGGGATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
112917942 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
112917957 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
112918021 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
112918036 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
112918060 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 26 0.30
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:112934779 original size:39 final size:40
Alignment explanation
Indices: 112934575--112934797 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
112934565 TTGAATGCTG
* * * * * *
112934575 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
112934615 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
112934655 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
112934695 TCCGGGTTAAGTCCCGAAGGCATTCGTTCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
112934735 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
112934774 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
112934798 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:112934817 original size:79 final size:80
Alignment explanation
Indices: 112934650--112934832 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
112934640 GTGCGAGATA
* * *
112934650 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
112934715 CATTCGTTCGAGTTG
66 CATTCGAACGAGGAG
* * * *
112934730 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
112934794 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
112934809 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
112934833 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:112942664 original size:39 final size:40
Alignment explanation
Indices: 112942460--112942682 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
112942450 TTGAATGCTG
* * * * * *
112942460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
112942500 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
112942540 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
112942580 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
112942620 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
112942659 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
112942683 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:112942702 original size:79 final size:80
Alignment explanation
Indices: 112942535--112942717 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
112942525 GTGCGAGATA
* * *
112942535 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
112942600 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
112942615 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
112942679 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
112942694 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
112942718 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:112944922 original size:21 final size:22
Alignment explanation
Indices: 112944898--112944943 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
112944888 CTAGCACGGC
**
112944898 CGTG-CCCTAGGGTCACATCGG
1 CGTGACCCTAGGACCACATCGG
*
112944919 CGTGACCCTTGGACCACATCGG
1 CGTGACCCTAGGACCACATCGG
112944941 CGT
1 CGT
112944944 ATGAGCCATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.15, C:0.35, G:0.30, T:0.20
Consensus pattern (22 bp):
CGTGACCCTAGGACCACATCGG
Found at i:112947836 original size:29 final size:29
Alignment explanation
Indices: 112947803--112947883 Score: 162
Period size: 29 Copynumber: 2.8 Consensus size: 29
112947793 CACCTTGACA
112947803 CGAACTCTCAATGAACAAGTTCTTCATCG
1 CGAACTCTCAATGAACAAGTTCTTCATCG
112947832 CGAACTCTCAATGAACAAGTTCTTCATCG
1 CGAACTCTCAATGAACAAGTTCTTCATCG
112947861 CGAACTCTCAATGAACAAGTTCT
1 CGAACTCTCAATGAACAAGTTCT
112947884 CCACCTCTTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (29 bp):
CGAACTCTCAATGAACAAGTTCTTCATCG
Found at i:112952105 original size:41 final size:41
Alignment explanation
Indices: 112952047--112952134 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
112952037 AAGGTTCGCG
112952047 AAAAGGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
1 AAAA-GGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
*
112952089 AAAAGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGCGC
1 AAAAGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
112952130 AAAAG
1 AAAAG
112952135 CCCCCCCACC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (41 bp):
AAAAGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
Found at i:112953851 original size:180 final size:179
Alignment explanation
Indices: 112953423--112954228 Score: 930
Period size: 180 Copynumber: 4.5 Consensus size: 179
112953413 TTGATAGGTT
** * * * * * * *
112953423 AAATCTGCTCCATTGCAAATACATGGAGATAAGATTCATCATTTTC--A-ATTTGCTCCACTGGA
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTTCGCTGCA
* * * * *
112953485 A-CTTCAGGGAGATAAGATCCTCAATCCTCAGTCTGCTTCCTTGCTACATCAGGAAGATAAGACT
66 ATC-TCAGGGAGATAAAATCTTTAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
* *
112953549 CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAAATGAGGCTAGTGGTA
130 CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGTA
* * * **
112953599 AAATTTGCTCCATTACCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTCCATTGTC
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTTCGCTG-C
* * * * * * * *
112953664 -GTCTCAGGGATATAAAATCTTTAATTCTTAGTCTGCTTCTTTGCTACCTCAAGAAAATAAAATT
65 AATCTCAGGGAGATAAAATCTTTAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
* *
112953728 CATTCTTCAACCTGCTCGCTTGCTACCTCAAAGAGATAAGG-TCAGTGGCTA
130 CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT-AGTGG-TA
* * *
112953779 AAATTTACTCCATCGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTTCGCTGCA
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTTCGCTGCA
* *
112953844 ATCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACTC
66 ATCTCAGGGAGATAAAATCTTTAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTC
* *
112953909 ATTCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTTGGTGGTA
131 ATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGC-TAGTGGTA
* * *
112953959 AAATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCGTCTGCGAAGATCTAC-TCTGCTGC
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTTC-GCTGC
* * * * *
112954023 AA-CTTCAGTGAGATAAGATTTTTAATTCCCAGTCTGCTTCCTTGCTACCTCTGGAAGATAAGAC
65 AATC-TCAGGGAGATAAAATCTTTAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGAC
* * *
112954087 TCATTCTTCAACCTGCTCTCATGCTACCTCAGAGAGATGAGGCTGGTGGTA
129 TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGTA
* * * * * * * *
112954138 AAATCTGCTCCATTTCCAATACATAGAGATAAGATTCATCATCTACGAATATCT-ATTCCGCTAC
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTT-CGCTGC
* *
112954202 AA-CTTCAGGGAGATAAGATCTTCAATT
65 AATC-TCAGGGAGATAAAATCTTTAATT
112954229 TTTACCTAAT
Statistics
Matches: 540, Mismatches: 76, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
176 39 0.07
178 2 0.00
179 189 0.35
180 305 0.56
181 4 0.01
182 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (179 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTTCGCTGCA
ATCTCAGGGAGATAAAATCTTTAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTC
ATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGTA
Found at i:112967004 original size:17 final size:17
Alignment explanation
Indices: 112966982--112967015 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
112966972 TATCATTTAG
112966982 TTAAAATATGAATTATA
1 TTAAAATATGAATTATA
112966999 TTAAAATATGAATTATA
1 TTAAAATATGAATTATA
112967016 AGATTAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
TTAAAATATGAATTATA
Found at i:112979917 original size:6 final size:6
Alignment explanation
Indices: 112979908--112979936 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
112979898 ATAAACAAAA
112979908 AATTTC AATTTC AATTTC AATTTC AATTT
1 AATTTC AATTTC AATTTC AATTTC AATTT
112979937 ATACTACTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (6 bp):
AATTTC
Found at i:112981356 original size:38 final size:38
Alignment explanation
Indices: 112981305--112981383 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
112981295 CTCCACAGAG
112981305 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
1 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
112981343 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
1 TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
112981381 TAA
1 TAA
112981384 GGAGTCCATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.22
Consensus pattern (38 bp):
TAAAAGAAAAACTCTAGTTTGGGACAATACCAACCCAT
Found at i:112987396 original size:15 final size:14
Alignment explanation
Indices: 112987370--112987456 Score: 68
Period size: 15 Copynumber: 6.0 Consensus size: 14
112987360 TATTCTAATA
*
112987370 CTATTATTATTTAT
1 CTATTTTTATTTAT
112987384 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
112987399 CTATTTGTATTTCT
1 CTATTTTTATTTAT
*
112987413 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
*
112987428 CTATTTATTATTTTT
1 CTATTT-TTATTTAT
* *
112987443 TTATTTCTATTTAT
1 CTATTTTTATTTAT
112987457 ATACTAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
14 25 0.42
15 32 0.54
16 2 0.03
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.67
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:112987409 original size:14 final size:15
Alignment explanation
Indices: 112987377--112987410 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
112987367 ATACTATTAT
*
112987377 TATTTATCTAATTTT
1 TATTTATCTAATTTG
112987392 TATTTATCT-ATTTG
1 TATTTATCTAATTTG
112987406 TATTT
1 TATTT
112987411 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.68
Consensus pattern (15 bp):
TATTTATCTAATTTG
Found at i:112987416 original size:44 final size:44
Alignment explanation
Indices: 112987319--112987454 Score: 120
Period size: 44 Copynumber: 3.1 Consensus size: 44
112987309 TTTAATATAT
* * * * *
112987319 TATTGCTATTATTTTTATGTTTCTATTTA-TATTTAT-T-TTAC
1 TATTTCTACTATTATTATATTTCTATTTATTATTTATCTATTTC
* *
112987360 TATTCTAATACTATTATTAT-TTATCTAATTT-TTATTTATCTATTTG
1 TATT-T-CTACTATTATTATATT-TCT-ATTTATTATTTATCTATTTC
* *
112987406 TATTTCTACTATTATTATATTTCTATTTATTATTTTTTTATTTC
1 TATTTCTACTATTATTATATTTCTATTTATTATTTATCTATTTC
112987450 TATTT
1 TATTT
112987455 ATATACTAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
41 4 0.05
42 2 0.03
43 17 0.22
44 43 0.57
45 4 0.05
46 6 0.08
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.65
Consensus pattern (44 bp):
TATTTCTACTATTATTATATTTCTATTTATTATTTATCTATTTC
Found at i:112987434 original size:52 final size:50
Alignment explanation
Indices: 112987344--112987477 Score: 118
Period size: 50 Copynumber: 2.7 Consensus size: 50
112987334 TATGTTTCTA
* * * *
112987344 TTTATATTTATTTTACTATTCTAATACTATTATTA-TT-TATCTA--ATTTT
1 TTTATATCTA-TTTA-TATACTAATATTATTATTATTTCTATTTATTATTTT
* * *
112987392 TATT-TATCTATTTGTATTTCTACTATTATTA-TATTTCTATTTATTATTTT
1 T-TTATATCTATTTATA-TACTAATATTATTATTATTTCTATTTATTATTTT
*
112987442 TTTATTTCTATTTATATACTAATATTATTATTATTT
1 TTTATATCTATTTATATACTAATATTATTATTATTT
112987478 TTCTTATATA
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
46 4 0.06
47 17 0.25
48 11 0.16
49 16 0.23
50 21 0.30
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.64
Consensus pattern (50 bp):
TTTATATCTATTTATATACTAATATTATTATTATTTCTATTTATTATTTT
Found at i:112987447 original size:29 final size:30
Alignment explanation
Indices: 112987327--112987447 Score: 81
Period size: 29 Copynumber: 4.2 Consensus size: 30
112987317 ATTATTGCTA
* *
112987327 TTATTTTTATGTTTCTATTTA-TATTTATT
1 TTATTATTATATTTCTATTTATTATTTATT
* * * * *
112987356 TTACTATTCTAATACTA-TTATTATTTATC
1 TTATTATTATATTTCTATTTATTATTTATT
* * * * *
112987385 TAATTTTTAT-TTATCTATTT-GTATTTCTA
1 TTATTATTATATT-TCTATTTATTATTTATT
*
112987414 CTATTATTATATTTCTATTTATTATTT-TT
1 TTATTATTATATTTCTATTTATTATTTATT
112987443 TTATT
1 TTATT
112987448 TCTATTTATA
Statistics
Matches: 65, Mismatches: 22, Indels: 10
0.67 0.23 0.10
Matches are distributed among these distances:
28 4 0.06
29 52 0.80
30 9 0.14
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (30 bp):
TTATTATTATATTTCTATTTATTATTTATT
Found at i:112987640 original size:25 final size:24
Alignment explanation
Indices: 112987579--112987658 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 24
112987569 TATAACGCTC
* *
112987579 ATTTCAAATTTTTATACATTATTT
1 ATTTCAAATTTTCATACATTATAT
*
112987603 ACTTT-AATATTTTCATATATTATAT
1 A-TTTCAA-ATTTTCATACATTATAT
**
112987628 ATTTCAAACTTTTTTTACACTTTATAT
1 ATTTCAAA-TTTTCATACA--TTATAT
112987655 ATTT
1 ATTT
112987659 TGAATTGTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 7 0.16
25 27 0.61
27 10 0.23
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTCAAATTTTCATACATTATAT
Found at i:112994523 original size:35 final size:35
Alignment explanation
Indices: 112994484--112994555 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
112994474 TTCACCCTAC
112994484 AAAATTTATTGTCATATGCCACTTAATGTTATATA
1 AAAATTTATTGTCATATGCCACTTAATGTTATATA
112994519 AAAATTTATTGTCATATGCCACTTAATGTTATATA
1 AAAATTTATTGTCATATGCCACTTAATGTTATATA
112994554 AA
1 AA
112994556 CTAAGCATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (35 bp):
AAAATTTATTGTCATATGCCACTTAATGTTATATA
Found at i:112998284 original size:48 final size:48
Alignment explanation
Indices: 112998212--112998305 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
112998202 TATGTAAATG
*
112998212 AGTTATGTCCAAACTTGATCATAACTTTTTATAAATAAATACATTATA
1 AGTTATGCCCAAACTTGATCATAACTTTTTATAAATAAATACATTATA
* *
112998260 AGTTATGCCCATACTT-AGTCATAACTTTTTATAAATAAATATATTA
1 AGTTATGCCCAAACTTGA-TCATAACTTTTTATAAATAAATACATTA
112998306 CAACACTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 1 0.02
48 41 0.98
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (48 bp):
AGTTATGCCCAAACTTGATCATAACTTTTTATAAATAAATACATTATA
Found at i:113000618 original size:25 final size:25
Alignment explanation
Indices: 113000580--113000658 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
113000570 GTCATTAGGG
113000580 TTACTGAT-TCTCAGCTTGAGAGAGC
1 TTACTGATAT-TCAGCTTGAGAGAGC
* *
113000605 TTACTGATATTCAGC-TCACATGAGC
1 TTACTGATATTCAGCTTGAGA-GAGC
* *
113000630 TTACCGTTATTCAGCTTG-GAAGAGC
1 TTACTGATATTCAGCTTGAG-AGAGC
113000655 TTAC
1 TTAC
113000659 CATTTACAGC
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
24 3 0.07
25 38 0.86
26 3 0.07
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
TTACTGATATTCAGCTTGAGAGAGC
Found at i:113003558 original size:26 final size:28
Alignment explanation
Indices: 113003505--113003560 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
113003495 TTTTTTTTTT
* * *
113003505 ATATTTATTATTTCTCTCATTTTAGTTC
1 ATATTGATTACTTCTCTCATTGTAGTTC
113003533 ATATTGATTACTTCTCT-ATTGT-GTTC
1 ATATTGATTACTTCTCTCATTGTAGTTC
113003559 AT
1 AT
113003561 TTTGTGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.24
27 4 0.16
28 15 0.60
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (28 bp):
ATATTGATTACTTCTCTCATTGTAGTTC
Found at i:113006012 original size:15 final size:15
Alignment explanation
Indices: 113005994--113006028 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
113005984 TAAATTTGTC
*
113005994 TAAGTTAAGTTAATT
1 TAAGTTAACTTAATT
113006009 TAAGTTAACTTAATT
1 TAAGTTAACTTAATT
113006024 TAAGT
1 TAAGT
113006029 CTCGAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (15 bp):
TAAGTTAACTTAATT
Found at i:113009288 original size:25 final size:24
Alignment explanation
Indices: 113009260--113009350 Score: 112
Period size: 25 Copynumber: 3.7 Consensus size: 24
113009250 AATTGCCTTC
113009260 CAGTCGAACAGTCAATCGGACATGT
1 CAGTCGAACAGTCAATCGGACAT-T
* *
113009285 CAGTCGAACAGTCATTCAGACAATT
1 CAGTCGAACAGTCAATCGGAC-ATT
*
113009310 CAGTCGAACAGTCAATTAGG-CATTT
1 CAGTCGAACAGTCAA-TCGGACA-TT
113009335 CAGTCGAACAGTCAAT
1 CAGTCGAACAGTCAAT
113009351 ATGATGCATA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
24 2 0.03
25 52 0.90
26 4 0.07
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (24 bp):
CAGTCGAACAGTCAATCGGACATT
Found at i:113010000 original size:4 final size:4
Alignment explanation
Indices: 113009991--113010018 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
113009981 AGTTTATGCA
113009991 TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG
113010019 CAATCAGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:113013063 original size:58 final size:58
Alignment explanation
Indices: 113012999--113013122 Score: 153
Period size: 58 Copynumber: 2.1 Consensus size: 58
113012989 ATAGAAATGG
*
113012999 TAAAAATGGAGAAATGAGAAAT-ATTTAGAAATGATTAT-GATTTTCTCCAAAATGAAAA
1 TAAAAATGGAGAAATG-G-AATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
* * * * *
113013057 TAAAAATGGAGAAATGGAATCATTTGGAAATGAATGTGGTTTTTTTCTAAAATGAAAA
1 TAAAAATGGAGAAATGGAATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
*
113013115 TGAAAATG
1 TAAAAATG
113013123 ACTTGAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 3 0.05
57 14 0.25
58 40 0.70
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.31
Consensus pattern (58 bp):
TAAAAATGGAGAAATGGAATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
Found at i:113017343 original size:25 final size:26
Alignment explanation
Indices: 113017297--113017350 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
113017287 ATCAATTAAA
* *
113017297 ATTTATTATTAAATATTTAATCCAAAT
1 ATTTATTAATAAATA-TAAATCCAAAT
*
113017324 ATTTATTAATAAATA-AAATCTAAAT
1 ATTTATTAATAAATATAAATCCAAAT
113017349 AT
1 AT
113017351 ATGAATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.42
27 14 0.58
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTTATTAATAAATATAAATCCAAAT
Found at i:113018133 original size:36 final size:35
Alignment explanation
Indices: 113018093--113018187 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 35
113018083 TGGTTGAATT
*
113018093 TTAAACATTTTAAAAATTAAAATATAGAAAAAAATA
1 TTAAA-ATTTTAAAAATTAAAAAATAGAAAAAAATA
* * *
113018129 TTAAAAGTATAAGACATTAAAAAATAGAAAAAAATA
1 TTAAAATTTTAA-AAATTAAAAAATAGAAAAAAATA
113018165 -TAAAATTTCTAAAAA-TAAAAAAT
1 TTAAAATTT-TAAAAATTAAAAAAT
113018188 CACTAAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
34 8 0.16
35 13 0.26
36 29 0.58
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.27
Consensus pattern (35 bp):
TTAAAATTTTAAAAATTAAAAAATAGAAAAAAATA
Found at i:113018193 original size:17 final size:17
Alignment explanation
Indices: 113018158--113018199 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
113018148 AAAAATAGAA
* **
113018158 AAAAATATAAAATTTCT
1 AAAAATAAAAAATCACT
113018175 AAAAATAAAAAATCACT
1 AAAAATAAAAAATCACT
113018192 -AAAATAAA
1 AAAAATAAA
113018200 GAAAATCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATAAAAAATCACT
Found at i:113025899 original size:58 final size:58
Alignment explanation
Indices: 113025835--113025951 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
113025825 CCAAAAATGC
113025835 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
1 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
* * *
113025893 ATTAAGTATAAGGCTAAAACATGTTATTTTTAGCGCTTATCAATGCATTTGAAAACAT
1 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
113025951 A
1 A
113025952 CACCCAAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (58 bp):
ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
Found at i:113026162 original size:93 final size:93
Alignment explanation
Indices: 113026057--113026245 Score: 378
Period size: 93 Copynumber: 2.0 Consensus size: 93
113026047 TTCAATAGTG
113026057 TTAGAAAAATACTGGTTTCAAGACCATAATTTTGACAAGTGTGTTATTATTTTAGTGTTTATTTA
1 TTAGAAAAATACTGGTTTCAAGACCATAATTTTGACAAGTGTGTTATTATTTTAGTGTTTATTTA
113026122 ATGCCTATGGGATTATATTAAGGTCGTA
66 ATGCCTATGGGATTATATTAAGGTCGTA
113026150 TTAGAAAAATACTGGTTTCAAGACCATAATTTTGACAAGTGTGTTATTATTTTAGTGTTTATTTA
1 TTAGAAAAATACTGGTTTCAAGACCATAATTTTGACAAGTGTGTTATTATTTTAGTGTTTATTTA
113026215 ATGCCTATGGGATTATATTAAGGTCGTA
66 ATGCCTATGGGATTATATTAAGGTCGTA
113026243 TTA
1 TTA
113026246 AATTTTTGTT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 96 1.00
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (93 bp):
TTAGAAAAATACTGGTTTCAAGACCATAATTTTGACAAGTGTGTTATTATTTTAGTGTTTATTTA
ATGCCTATGGGATTATATTAAGGTCGTA
Found at i:113028489 original size:54 final size:54
Alignment explanation
Indices: 113028402--113028522 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
113028392 GTATTTCAAG
* ** * *
113028402 TCAGTGAGTTATATGGCCTAACACATGGCCTAGCACACGGG-GTTGTGTGGTAAC
1 TCAGTGAGTTACATGGCCTAACACAAAGCCTAGCACACGGGTG-CGTGTGGCAAC
* *
113028456 TCAGGGAGTTACATGGCCTAGCACAAAGCCTAGCACACGGGTGCGTGTGGCAAC
1 TCAGTGAGTTACATGGCCTAACACAAAGCCTAGCACACGGGTGCGTGTGGCAAC
*
113028510 TCAATGAGTTACA
1 TCAGTGAGTTACA
113028523 CAGGTGAGGG
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (54 bp):
TCAGTGAGTTACATGGCCTAACACAAAGCCTAGCACACGGGTGCGTGTGGCAAC
Found at i:113031452 original size:31 final size:29
Alignment explanation
Indices: 113031417--113031495 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 29
113031407 AGGATGAGCC
113031417 CACGGGCGTGTGAGTCCAC-ATGGTCCACCTA
1 CACGGGCGTGT--GTCC-CTATGGTCCACCTA
*
113031448 CACGGGCGTGTTTCCCTTTATGGTCCACCTA
1 CACGGGCGTGTGTCCC--TATGGTCCACCTA
*
113031479 CACGGGCGTGTTTCCCT
1 CACGGGCGTGTGTCCCT
113031496 TTATGTTAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
28 1 0.02
29 4 0.09
31 39 0.89
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.27
Consensus pattern (29 bp):
CACGGGCGTGTGTCCCTATGGTCCACCTA
Found at i:113031496 original size:31 final size:31
Alignment explanation
Indices: 113031436--113031500 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
113031426 GTGAGTCCAC
113031436 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
1 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
113031467 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
1 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
113031498 ATG
1 ATG
113031501 TTAAGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.14, C:0.31, G:0.23, T:0.32
Consensus pattern (31 bp):
ATGGTCCACCTACACGGGCGTGTTTCCCTTT
Found at i:113041400 original size:24 final size:24
Alignment explanation
Indices: 113041340--113041420 Score: 110
Period size: 23 Copynumber: 3.4 Consensus size: 24
113041330 TTCCAGTTAC
*
113041340 ATGGCTCTTTGTGAGCTTCCTGAT
1 ATGGCTCTTTGTGAGCTTCCCGAT
113041364 A-GGCTCTTTGTGAGCTTCCCGAT
1 ATGGCTCTTTGTGAGCTTCCCGAT
* *
113041387 ATGGTTCTTTGTGAACTTCCCGATT
1 ATGGCTCTTTGTGAGCTTCCCGA-T
*
113041412 ATGACTCTT
1 ATGGCTCTT
113041421 ATGAGTTTCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 22 0.44
24 20 0.40
25 8 0.16
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (24 bp):
ATGGCTCTTTGTGAGCTTCCCGAT
Found at i:113049087 original size:46 final size:46
Alignment explanation
Indices: 113049017--113049381 Score: 392
Period size: 46 Copynumber: 8.0 Consensus size: 46
113049007 GCTTTCTGAA
* *
113049017 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGGAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
113049063 ATTAAATGTGTAAGACAATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
113049109 ATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
113049155 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
****
113049201 ATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * ** * *
113049246 CGGGAATGAATAAGACCACGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *** * *
113049292 GTGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
113049338 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
113049382 CCAAAGATAA
Statistics
Matches: 271, Mismatches: 46, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
45 37 0.14
46 234 0.86
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:113049328 original size:137 final size:138
Alignment explanation
Indices: 113049017--113049381 Score: 432
Period size: 137 Copynumber: 2.7 Consensus size: 138
113049007 GCTTTCTGAA
* * * * * *
113049017 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGGAACATGATATTAAATGTGTAAGACAAT
1 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAGTAAGACCAT
* ** * *
113049082 GGTTGAAAGACACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGC
66 GGTTGAAAGACACCATGGCAACATGATAGGAAATGAATAAGACCACGGTTGAAAGATACCATGGC
113049147 AACAGGAT
131 AACAGGAT
* * * * *
113049155 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAAAATAAGACCAT
1 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAGTAAGACCAT
* * *
113049220 GGTTGAAAGATACCATGGCAACATGA-CGGGAATGAATAAGACCACGGTTGAAAGATACCATGGC
66 GGTTGAAAGACACCATGGCAACATGATAGGAAATGAATAAGACCACGGTTGAAAGATACCATGGC
* *
113049284 AA-TGTA-
131 AACAGGAT
** *
113049290 ACGTGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACA-GAAAATGAGTAAGAC
1 A--TGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-GAGTAAGAC
* * *
113049354 CATAGTTGAAAGACACTATGGCATCATG
63 CATGGTTGAAAGACACCATGGCAACATG
113049382 CCAAAGATAA
Statistics
Matches: 192, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
135 1 0.01
136 7 0.04
137 105 0.55
138 79 0.41
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (138 bp):
ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAGTAAGACCAT
GGTTGAAAGACACCATGGCAACATGATAGGAAATGAATAAGACCACGGTTGAAAGATACCATGGC
AACAGGAT
Found at i:113049353 original size:183 final size:184
Alignment explanation
Indices: 113049028--113049376 Score: 448
Period size: 183 Copynumber: 1.9 Consensus size: 184
113049018 TGAAATGTGC
* ** ** *
113049028 AAGACCATGGTTGAAAGATACCATGGGAACATGATATTAAATGTGTAAGACAATGGTTGAAAGAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAATAAGACAACGGTTGAAAGAC
* * *** * * *
113049093 ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAACAGGATATA
66 ACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACAGGACAGA
* * *
113049158 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAAAAT
131 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAAAAT
* * * *
113049212 AAGACCATGGTTGAAAGATACCATGGCAACATGA-CGGGAATGAATAAGACCACGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAATAAGACAACGGTTGAAAGAC
** * **
113049276 ACCATGGCAATGTAACGTGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGA
66 ACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACAGGACAGA
*
113049341 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
131 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCA
113049377 TCATGCCAAA
Statistics
Matches: 138, Mismatches: 27, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
183 105 0.76
184 33 0.24
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (184 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAATGAATAAGACAACGGTTGAAAGAC
ACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACAGGACAGA
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAAAAT
Found at i:113050448 original size:212 final size:212
Alignment explanation
Indices: 113050079--113050502 Score: 704
Period size: 212 Copynumber: 2.0 Consensus size: 212
113050069 ACTTATCTAT
* *
113050079 CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACTTGTGACCGCATAACAGCCGCAG
1 CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAG
*
113050144 ACTGGGACCTTTACATACACTTCAACTCGTGACTGTATAAAGCACCATCACCCAGAAACCTGACT
66 ACTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACT
*
113050209 TCTATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGGGTGTCTC
131 TCCATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGGGTGTCTC
113050274 CGAACGTTATCGCATCC
196 CGAACGTTATCGCATCC
* * *
113050291 CGATAGTGTCGCAAACACCCCCTCGTCATTGTTTTATCCAACCTGTGACCACATAACAGCCGCCG
1 CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAG
* * *
113050356 ACTGGGACTTTTACATACACTTCAACTCGTGACCGTATAAAGCACTATCACCCAGGAACCTGACT
66 ACTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACT
* * * *
113050421 TCCATAGGATGAGTTTCTAATGTAATGGTCTCATCTCGACATGACATATGAAATGTGTGTGTCTT
131 TCCATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGGGTGTCTC
* *
113050486 CGAGCGTTATTGCATCC
196 CGAACGTTATCGCATCC
113050503 TCGACAACTC
Statistics
Matches: 196, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
212 196 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (212 bp):
CGATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAG
ACTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACT
TCCATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAATGTGGGTGTCTC
CGAACGTTATCGCATCC
Found at i:113053022 original size:17 final size:17
Alignment explanation
Indices: 113053002--113053035 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
113052992 AGGTTTAGGT
113053002 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
113053019 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
113053036 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:113069310 original size:46 final size:46
Alignment explanation
Indices: 113069236--113069357 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
113069226 GGGGCGTTAC
* ** * *
113069236 ATCTTTCAACTATGGTCTTATTCTTTTCATGTCACGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
*
113069282 ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
113069328 ATCTTTCAACCATGGTCTTACACATTTCAT
1 ATCTTTCAACCATGGTCTTACACATTTCAT
113069358 TTCAGAAAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (46 bp):
ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
Found at i:113071472 original size:30 final size:33
Alignment explanation
Indices: 113071412--113071481 Score: 85
Period size: 31 Copynumber: 2.2 Consensus size: 33
113071402 TATATAATAA
*
113071412 AATAATAATAATAAATTATCTTATTAAAAT-ATT
1 AATAA-AATAATAAATTATCTAATTAAAATAATT
*
113071445 AATAAAATAAT-ATTTATCTAATT-AAATAATT
1 AATAAAATAATAAATTATCTAATTAAAATAATT
113071476 -ATAAAA
1 AATAAAA
113071482 CATCAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 10 0.29
31 13 0.38
32 6 0.18
33 5 0.15
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (33 bp):
AATAAAATAATAAATTATCTAATTAAAATAATT
Found at i:113071474 original size:27 final size:27
Alignment explanation
Indices: 113071400--113071479 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
113071390 CCTTTCTTTC
* *
113071400 TTTATATAATAAAATAATAATAATAAA
1 TTTATCTAATTAAATAATAATAATAAA
* *
113071427 -TTATCTTATTAAAATATTAATAAAATAATA
1 TTTATCTAATT-AAATAATAAT--AATAA-A
*
113071457 TTTATCTAATTAAATAATTATAA
1 TTTATCTAATTAAATAATAATAA
113071480 AACATCAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
26 7 0.17
27 9 0.22
28 2 0.05
29 5 0.12
30 9 0.22
31 9 0.22
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (27 bp):
TTTATCTAATTAAATAATAATAATAAA
Found at i:113072555 original size:141 final size:141
Alignment explanation
Indices: 113072296--113072579 Score: 514
Period size: 141 Copynumber: 2.0 Consensus size: 141
113072286 ATAAAATCAT
113072296 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
1 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
* *
113072361 GTAACTTTCAAAATTACCCATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTGAA
66 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
113072426 AGTCTCAAAAA
131 AGTCTCAAAAA
* * * *
113072437 CACATAACAAAATTAGAGCTTCAATTCCATTTTAATTCATCATAAATATACAGCACTCATTAATG
1 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
113072502 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
66 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
113072567 AGTCTCAAAAA
131 AGTCTCAAAAA
113072578 CA
1 CA
113072580 TAAAAATTCC
Statistics
Matches: 137, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 137 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (141 bp):
CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
AGTCTCAAAAA
Found at i:113073518 original size:12 final size:12
Alignment explanation
Indices: 113073501--113073525 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113073491 CAATCGATAC
113073501 TTAGCTTATAGT
1 TTAGCTTATAGT
113073513 TTAGCTTATAGT
1 TTAGCTTATAGT
113073525 T
1 T
113073526 GATAAGGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAGCTTATAGT
Found at i:113074714 original size:20 final size:20
Alignment explanation
Indices: 113074689--113074740 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
113074679 AAGTGATTTT
113074689 TAGGAAAATTAATTTTGATC
1 TAGGAAAATTAATTTTGATC
113074709 TAGGAAAATTAATTTTGATC
1 TAGGAAAATTAATTTTGATC
* *
113074729 AAGTAAAATTAA
1 TAGGAAAATTAA
113074741 ATTAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (20 bp):
TAGGAAAATTAATTTTGATC
Found at i:113076423 original size:5 final size:5
Alignment explanation
Indices: 113076413--113076446 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
113076403 TTTGTGTATT
113076413 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
113076447 CACAAATTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:113095533 original size:42 final size:42
Alignment explanation
Indices: 113095486--113095675 Score: 140
Period size: 43 Copynumber: 4.5 Consensus size: 42
113095476 CGATGCCTCA
*
113095486 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGCCGAT
1 GTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGAT
* * * * *
113095528 GTCCCAAACATGGTCTTATACGTAAATATCA-AT-CGAGGCCTG-T
1 GTCCCAGACACGGTC-T-TACATGAA-ATCAGATACGATGCC-GAT
* * *
113095571 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGAT
1 GTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGAT
* * * * *
113095613 GTCCCAGACATGGTTTTATACGTAAACCTCA-AT-CGAGGCCTG-T
1 GTCCCAGACACGGTCTTACATG-AAA--TCAGATACGATGCC-GAT
113095656 GTCCCAGACACGGTCTTACA
1 GTCCCAGACACGGTCTTACA
113095676 CGATGTCTCA
Statistics
Matches: 115, Mismatches: 22, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
40 3 0.03
41 8 0.07
42 39 0.34
43 47 0.41
44 12 0.10
45 6 0.05
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (42 bp):
GTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGAT
Found at i:113095576 original size:43 final size:42
Alignment explanation
Indices: 113095527--113095673 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 42
113095517 ACGATGCCGA
* *
113095527 TGTCCCAAACATGGTCTTATACGTAAATATCAATCGAGGCCTG
1 TGTCCCAGACACGGTCTTATACGTAAA-ATCAATCGAGGCCTG
* **
113095570 TGTCCCAGACACGGTCTTACACG-AAAA-CAGATACGATACC-G
1 TGTCCCAGACACGGTCTTATACGTAAAATCA-AT-CGAGGCCTG
* * *
113095611 ATGTCCCAGACATGGTTTTATACGTAAACCTCAATCGAGGCCTG
1 -TGTCCCAGACACGGTCTTATACGTAAA-ATCAATCGAGGCCTG
113095655 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
113095674 CACGATGTCT
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
40 2 0.02
41 4 0.05
42 28 0.33
43 45 0.54
44 3 0.04
45 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTATACGTAAAATCAATCGAGGCCTG
Found at i:113095578 original size:85 final size:85
Alignment explanation
Indices: 113095486--113095678 Score: 314
Period size: 85 Copynumber: 2.3 Consensus size: 85
113095476 CGATGCCTCA
* * * *
113095486 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAAACATGGTCTTATACGT
1 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAAACATGGTCTTATACGT
*
113095551 AAATATCAATCGAGGCCTGT
66 AAACATCAATCGAGGCCTGT
* *
113095571 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAGACATGGTTTTATACGT
1 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAAACATGGTCTTATACGT
*
113095636 AAACCTCAATCGAGGCCTGT
66 AAACATCAATCGAGGCCTGT
113095656 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACACGGTCTTACACGA
113095679 TGTCTCAGAC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 100 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (85 bp):
GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAAACATGGTCTTATACGT
AAACATCAATCGAGGCCTGT
Found at i:113100717 original size:18 final size:18
Alignment explanation
Indices: 113100687--113100773 Score: 79
Period size: 18 Copynumber: 4.7 Consensus size: 18
113100677 TGGAGAGGGT
113100687 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
*
113100705 ATATAAATAATAATATATGC
1 ATATAAATAATAATA-AT-A
*
113100725 ATGAGAAATAATAATAATA
1 AT-ATAAATAATAATAATA
* *
113100744 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
*
113100762 ATA-AAAAAATAA
1 ATATAAATAATAA
113100774 AAAAAATAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
17 10 0.18
18 27 0.47
19 4 0.07
20 4 0.07
21 12 0.21
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:113101861 original size:24 final size:24
Alignment explanation
Indices: 113101792--113101865 Score: 73
Period size: 24 Copynumber: 3.0 Consensus size: 24
113101782 GAGAGGGCAT
* *
113101792 ATATAATATAATAATATAAATAATA
1 ATATAA-ATAATAGTAAAAATAATA
113101817 ATAT--ATACATGAG-AAATAATAATA
1 ATATAAATA-AT-AGTAAA-AATAATA
113101841 ATATAAATAATAGTAAAAATAATA
1 ATATAAATAATAGTAAAAATAATA
113101865 A
1 A
113101866 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
22 3 0.07
23 4 0.10
24 22 0.54
25 9 0.22
26 3 0.07
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (24 bp):
ATATAAATAATAGTAAAAATAATA
Found at i:113101877 original size:13 final size:14
Alignment explanation
Indices: 113101855--113101884 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
113101845 AAATAATAGT
113101855 AAAAATAATAAAAC
1 AAAAATAATAAAAC
113101869 AAAAA-AATAAAAC
1 AAAAATAATAAAAC
113101882 AAA
1 AAA
113101885 GCTCTCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAATAATAAAAC
Found at i:113102318 original size:22 final size:22
Alignment explanation
Indices: 113102289--113102355 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
113102279 GATGGTTTAG
113102289 TGGAGTGGTTTAGTAGGGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
*
113102311 TGGGGTGGTTTAGTAGGGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
* *
113102333 TGGAGTAGTTTAGTAGAGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
113102355 T
1 T
113102356 TAATGGGGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.37
Consensus pattern (22 bp):
TGGAGTGGTTTAGTAGGGTGGT
Found at i:113102490 original size:16 final size:15
Alignment explanation
Indices: 113102449--113102493 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
113102439 CTTCGGAGGT
** *
113102449 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
113102464 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
113102479 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
113102494 CCCGGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:113102780 original size:44 final size:45
Alignment explanation
Indices: 113102686--113102793 Score: 155
Period size: 44 Copynumber: 2.4 Consensus size: 45
113102676 TGATATTTGC
*
113102686 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATATGT
1 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATACGT
* * *
113102731 CATCTTTGATCTGCTCTCTGT-TAATACAGAGACGCCAAATCCGT
1 TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATACGT
* *
113102775 TATCTTCGATCTGTTCCCT
1 TATCTTTGATCTGCTCCCT
113102794 ATAAGCACAG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 36 0.65
45 19 0.35
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (45 bp):
TATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATACGT
Found at i:113104123 original size:132 final size:132
Alignment explanation
Indices: 113102908--113104088 Score: 2065
Period size: 132 Copynumber: 8.9 Consensus size: 132
113102898 CAGATCTGCT
* *
113102908 ATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
113102973 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103038 AA
131 AA
* * *
113103040 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAAATCTGTTATCTTCGATCTGTTTCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
113103105 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103170 AA
131 AA
113103172 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * *
113103237 AAGCACAGAGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGTTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103302 AA
131 AA
* *
113103304 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCAATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * * * * *
113103369 AAACACAGGGATGCCAAATCTACGATCTTCAACTTGTTCCTTATAAGCACAGGGATACCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103434 AA
131 AA
113103436 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
113103501 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103566 AA
131 AA
*
113103568 ATATTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
113103633 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103698 AA
131 AA
* *
113103700 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
113103765 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103830 AA
131 AA
113103832 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
113103897 AAGCATAGGGATGCCAAATCTGCTATTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
113103962 AA
131 AA
* *
113103964 ATCTTCGATTTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * *
113104029 AAGCACGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
113104089 AATCTGCTGT
Statistics
Matches: 992, Mismatches: 57, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 992 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:113104201 original size:132 final size:132
Alignment explanation
Indices: 113104065--113104357 Score: 487
Period size: 132 Copynumber: 2.2 Consensus size: 132
113104055 TTTCAACTTG
* *
113104065 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTATTCCCTATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATA
* * * *
113104130 CCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGATC
66 CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATC
113104195 TA
131 TA
*
113104197 TTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATA
1 TTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATA
*
113104262 CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTTGATC
66 CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATC
*
113104327 TG
131 TA
**
113104329 TTCCCTATAAAAACAGGGATGCCAAATCT
1 TTCCCTATAAGCACAGGGATGCCAAATCT
113104358 ACAATCTTCG
Statistics
Matches: 150, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 150 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (132 bp):
TTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATA
CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATC
TA
Found at i:113104257 original size:396 final size:394
Alignment explanation
Indices: 113102915--113104220 Score: 2008
Period size: 396 Copynumber: 3.3 Consensus size: 394
113102905 GCTATCTTCG
* *
113102915 ATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACA
1 ATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACA
* *
113102980 GGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTT
65 GGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTT
* * *
113103045 CGATCTGCTTCACTGTAAGCACAGGAATGTCAAATCTGTTATCTTCGATCTGTTTCCTATAAGCA
130 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCA
113103110 CAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATC
195 CAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATC
113103175 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
260 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
* *
113103240 CACAGAGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCC-ATGTTGAA
325 CACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAT-CTGAA
*
113103304 ATCTTC
389 ATTTTC
* * *
113103310 GATCTGCTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCAATCTGTTCCCTATAAACAC
1 -ATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCAC
* * *
113103375 AGGGATGCCAAATCTACGATCTTCAACTTGTTCCTTATAAGCACAGGGATACCATGCTGAAATCT
64 AGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCT
113103440 TCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGC
129 TCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGC
113103505 ACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAAT
194 ACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAAT
*
113103570 ATTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
259 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* *
113103635 GCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCC-ATGCTGA
324 GCACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAT-CTGA
*
113103699 AATCTTTG
388 AAT-TTTC
*
113103707 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACA
1 ATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACA
* * * *
113103772 GGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTT
65 GGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTT
113103837 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCA
130 CGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCA
* * * *
113103902 TAGGGATGCCAAATCTGCTATTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATC
195 CAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATC
* *
113103967 TTCGATTTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
260 TTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAG
* * **
113104032 CACGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
325 CACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCC-AATCTGAA
*
113104097 GTTTTC
389 ATTTTC
* ** * * * * ** * *
113104103 AACTTATTCCCTATAAGCACAGGGATGCCATG-CTGAAATCTTCGATCTGCTTCACTGTAAGCAC
1 ATCTGCTTCACTGTAAGCACAGGAATGTCA-GACTGCTATCTTCGATCTG-TTCCCTATAAGCAC
* * * * * *
113104167 AGGAATGTCAGATCTATTATCTTCGA-TCTATTCCCTATAAGCACAGGGATGCCA
64 AGGGATGCCAAATCTACTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCCA
113104221 AATCTGCTAT
Statistics
Matches: 836, Mismatches: 68, Indels: 12
0.91 0.07 0.01
Matches are distributed among these distances:
395 15 0.02
396 812 0.97
397 7 0.01
398 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (394 bp):
ATCTGCTTCACTGTAAGCACAGGAATGTCAGACTGCTATCTTCGATCTGTTCCCTATAAGCACAG
GGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTC
GATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCAC
AGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCT
TCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGC
ACAGGGATGTCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAATCTGAAAT
TTTC
Found at i:113104399 original size:308 final size:307
Alignment explanation
Indices: 113102908--113104366 Score: 1039
Period size: 308 Copynumber: 4.7 Consensus size: 307
113102898 CAGATCTGCT
* ** *
113102908 ATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
* *
113102973 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATACCATACTG
* * *** *
113103038 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAAATCTGTTATCTTCGATCTGTTTCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATCTGTTCCCT
** * ** * * * * * *
113103103 ATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCC--AT
196 ATAAAAACAGGGATGCCAAATCTACAATCTTCAACTTGCTCCC-AGAAGCACAGAGACGCCAAAT
*** * * ** * * * * **
113103166 GCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCT
260 -CTGCTGTTTTC-AACTTATTCCCTATAAGCACAGGGATGCCATG--CTGAA
* * * * * * *
113103217 ATCTTCGATCTG-TTCCCTATAAGCACA-GAGATGTCAAATCTGCTATTTTC-AACTTGTTCCCT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGA-ATGTCAGATCTACTATCTTCGATC-TATTCCCT
** ** * * * * * * *
113103279 ATAAGCACAGGGATGCCATGT-TGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCAG
64 ATAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TG-TTCCCTATAAGCACAGGGAT-AC-C
** * * * * * * * * * * *
113103342 ATA-TGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAAATCTACGATCTTC-AACTT
125 ATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATC-T
* ** * * * *
113103404 GTTCCTTATAAGCACAGGGATACC--ATGCTGA-AATCTTCGA-TCTGCTTCACTGTAAGCACAG
189 GTTCCCTATAAAAACAGGGATGCCAAAT-CT-ACAATCTTCAACT-TGC-TCCCAG-AAGCACAG
* * * * * * * **
113103465 -GAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCT
249 AG-ACGCCAAATCTGCTGTTTTCAACT-TATTCCCTATAAGCACAGGGATGCC--ATGCTGAA
* * * * * * * * * * * *
113103525 GTTTTC-AACTTG-TTCCCTATAAGCATAGGGATG-C-CATGCTGA-AATATTCGATCTGCTTCA
1 ATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CT-ACTATCTTCGATCT-ATTCC
* * * * * * *
113103585 CTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCTATAAGCACAGGGATGCCA
62 CTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTATAAGCACAGGGATACCA
* ** * * * * * * * * * *
113103649 AATCTGCTATCTTC-AACTTG-TTCCCTATAAGCACAGGGATGCCATGCT-GA-AATCTTTGATC
126 TA-CTGAAATCTTCGATC-TGCTTCACTGTAAGCACAAGAATGTCA-GATCCACTATCTTCGATC
* * ** * * * * * * * * * *
113103710 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGG
188 TG-TTCCCTATAAAAACAGGGATGCCAAATCTACAATCTTCAACTTGCTCCC-AGAAGCACAGAG
* * *
113103775 ATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAA
251 ACGCCAAATCTGCTGTTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAA
* *
113103832 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
* * * *
113103897 AAGCATAGGGATGCCAAATCTGCTATTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATACCATACTG
* **
113103962 AAATCTTCGATTTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATCTGTTCCCT
** * * * ** * * * * *
113104027 ATAAGCACGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT
196 ATAAAAACAGGGATGCCAAATCTACAATCTTCAACTTGCTCCC-AGAAGCACAGAGACGCCAAAT
113104092 CTGCTGTTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAA
260 CTGCTGTTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAA
*
113104140 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGATCTATTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
113104205 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATACCATACTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATACCATACTG
*
113104270 AAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTTGATCTGTTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATCTGTTCCCT
113104335 ATAAAAACAGGGATGCCAAATCTACAATCTTC
196 ATAAAAACAGGGATGCCAAATCTACAATCTTC
113104367 GATCTGCTCT
Statistics
Matches: 926, Mismatches: 174, Indels: 101
0.77 0.14 0.08
Matches are distributed among these distances:
306 10 0.01
307 70 0.08
308 746 0.81
309 90 0.10
310 10 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (307 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATACCATACTG
AAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCCACTATCTTCGATCTGTTCCCT
ATAAAAACAGGGATGCCAAATCTACAATCTTCAACTTGCTCCCAGAAGCACAGAGACGCCAAATC
TGCTGTTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAA
Found at i:113104745 original size:205 final size:205
Alignment explanation
Indices: 113104387--113104872 Score: 828
Period size: 205 Copynumber: 2.4 Consensus size: 205
113104377 CCGCCGCTAT
* * *
113104387 AGAGACGCCAAATTATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCGAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
* * *
113104452 TCGATTTGCTCCTTGTAAGCACAAGGATGGCAAACCATCTTGGATCTGCTTCAGTATAAACATTT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
113104517 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
131 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
113104582 CTGACAATAC
196 CTGACAATAC
* *
113104592 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
*
113104657 TCGATTTGCTCCTTGTAAGCACAATGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
* * * * **
113104722 GAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTTGATTTGTTCT
131 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
113104787 CTGACAATAC
196 CTGACAATAC
113104797 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
*
113104862 TCGATCTGCTC
66 TCGATTTGCTC
113104873 TCCACCTGAT
Statistics
Matches: 263, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
205 263 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (205 bp):
AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGTTCT
CTGACAATAC
Found at i:113105141 original size:61 final size:65
Alignment explanation
Indices: 113105021--113105141 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 65
113105011 GTATCCATGC
*
113105021 TTATGCCAAATAATTCGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
1 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
* * *
113105086 TTATGTCAAATAATTAGGATG-T-T-A-TGAACTGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
113105142 TTATTGTAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
61 30 0.58
62 1 0.02
63 1 0.02
64 1 0.02
65 19 0.37
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (65 bp):
TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
Found at i:113106276 original size:20 final size:21
Alignment explanation
Indices: 113106253--113106304 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
113106243 TTTTTTCCTC
113106253 TTTTTTTTAGAATTTTTTGT-
1 TTTTTTTTAGAATTTTTTGTG
* *
113106273 TTTTTGTTT-TATTTTTTTGTG
1 TTTTT-TTTAGAATTTTTTGTG
113106294 TGTTTTTTTAG
1 T-TTTTTTTAG
113106305 GGCTCTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
20 14 0.56
21 7 0.28
22 4 0.16
ACGTcount: A:0.10, C:0.00, G:0.13, T:0.77
Consensus pattern (21 bp):
TTTTTTTTAGAATTTTTTGTG
Found at i:113109572 original size:19 final size:20
Alignment explanation
Indices: 113109548--113109594 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
113109538 AGTGAAAGTT
113109548 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
113109567 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
113109587 -AATGCAAA
1 TAATGCAAA
113109595 AAAAATGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:113112232 original size:3 final size:3
Alignment explanation
Indices: 113112224--113112274 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
113112214 AATAGGGGTG
*
113112224 ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA ATA
113112272 ATA
1 ATA
113112275 GTAGTCAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 31 0.72
4 11 0.26
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:113112362 original size:3 final size:3
Alignment explanation
Indices: 113112349--113112443 Score: 65
Period size: 3 Copynumber: 31.3 Consensus size: 3
113112339 GAGGGCATAT
113112349 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* * *
113112393 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA AAA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
113112437 AAA ATA A
1 ATA ATA A
113112444 AACAAAGCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
2 9 0.12
3 53 0.73
4 9 0.12
5 2 0.03
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:113112393 original size:21 final size:18
Alignment explanation
Indices: 113112354--113112413 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
113112344 CATATATAAT
*
113112354 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
113112372 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
113112393 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
113112411 ATA
1 ATA
113112414 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:113112856 original size:22 final size:22
Alignment explanation
Indices: 113112828--113112931 Score: 93
Period size: 22 Copynumber: 4.5 Consensus size: 22
113112818 TTTGTAGGCA
*
113112828 AGTGGAGTGGTTGGGATGGTTT
1 AGTGGAGTGGTTGGGGTGGTTT
*
113112850 AGTGGAGTGGTTTAGTGGGGTGGTTGG
1 AGTGGAGTGG--T--TGGGGTGGTT-T
* ** *
113112877 GGTGGTTTAG-TGGGGTGGTTT
1 AGTGGAGTGGTTGGGGTGGTTT
*
113112898 AGTGGGGTGGTTGGGGTGGTTT
1 AGTGGAGTGGTTGGGGTGGTTT
113112920 AGTGGAGTGGTT
1 AGTGGAGTGGTT
113112932 TAGTGGGGTG
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
21 6 0.09
22 42 0.66
24 1 0.02
26 9 0.14
27 6 0.09
ACGTcount: A:0.10, C:0.00, G:0.54, T:0.37
Consensus pattern (22 bp):
AGTGGAGTGGTTGGGGTGGTTT
Found at i:113112862 original size:13 final size:13
Alignment explanation
Indices: 113112828--113112944 Score: 114
Period size: 13 Copynumber: 9.9 Consensus size: 13
113112818 TTTGTAGGCA
113112828 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
113112840 -G-GGA-TGGTTT
1 AGTGGAGTGGTTT
113112850 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
113112863 AGTGGGGTGG-TT
1 AGTGGAGTGGTTT
113112875 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
*
113112885 AGTGGGGTGGTTT
1 AGTGGAGTGGTTT
*
113112898 AGTGGGGTGG-TT
1 AGTGGAGTGGTTT
113112910 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
113112920 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
113112933 AGTGGGGTGGTT
1 AGTGGAGTGGTT
113112945 GGAGTGAATA
Statistics
Matches: 91, Mismatches: 2, Indels: 23
0.78 0.02 0.20
Matches are distributed among these distances:
9 11 0.12
10 13 0.14
11 6 0.07
12 11 0.12
13 50 0.55
ACGTcount: A:0.09, C:0.00, G:0.54, T:0.37
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:113112874 original size:35 final size:35
Alignment explanation
Indices: 113112828--113112946 Score: 211
Period size: 35 Copynumber: 3.4 Consensus size: 35
113112818 TTTGTAGGCA
* *
113112828 AGTGGAGTGGTTGGGATGGTTTAGTGGAGTGGTTT
1 AGTGGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
*
113112863 AGTGGGGTGGTTGGGGTGGTTTAGTGGGGTGGTTT
1 AGTGGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
113112898 AGTGGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
1 AGTGGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
113112933 AGTGGGGTGGTTGG
1 AGTGGGGTGGTTGG
113112947 AGTGAATATA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 80 1.00
ACGTcount: A:0.09, C:0.00, G:0.55, T:0.36
Consensus pattern (35 bp):
AGTGGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
Found at i:113112947 original size:22 final size:22
Alignment explanation
Indices: 113112852--113112950 Score: 101
Period size: 22 Copynumber: 4.3 Consensus size: 22
113112842 GATGGTTTAG
113112852 TGGAGTGGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
*
113112874 TGGGGTGGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTGGGGTGGT
* ** *
113112896 T-TAGTGGGGTGGTTGGGGTGGTTT
1 TGGAGTGGTTTAG-TGGGGTGG--T
113112920 AGTGGAGTGGTTTAGTGGGGTGGT
1 --TGGAGTGGTTTAGTGGGGTGGT
113112944 TGGAGTG
1 TGGAGTG
113112951 AATATATTTG
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
21 6 0.10
22 37 0.61
24 2 0.03
26 9 0.15
27 7 0.11
ACGTcount: A:0.08, C:0.00, G:0.56, T:0.36
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGGGTGGT
Found at i:113113067 original size:16 final size:15
Alignment explanation
Indices: 113113026--113113070 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
113113016 CTTCGAAGGT
** *
113113026 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
113113041 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
113113056 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
113113071 CCCGGGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:113120598 original size:106 final size:106
Alignment explanation
Indices: 113120409--113120604 Score: 243
Period size: 106 Copynumber: 1.8 Consensus size: 106
113120399 GTCTAACAAC
* * *
113120409 GATGGTTTACCATCTCGGATTGCACTATAATGATGGTTTCCAATTCAATTTTGTCATCCCAAGTT
1 GATGGTTTACCATCCCGGATTGCACTACAATGATGGTTTCCAACTCAATTTTGTCATCCCAAGTT
* ** *
113120474 GCTCGACAATGATGACTTGCCACCCCGAATTACCCAGCAAT
66 GCTAGACAACAATAACTTGCCACCCCGAATTACCCAGCAAT
* * * * * *
113120515 GATGGTTTACCATCCCGGGTTGC-TTGACAATGATGGTTTTCAGCTCAATTTTGTCATCTCAGGT
1 GATGGTTTACCATCCCGGATTGCACT-ACAATGATGGTTTCCAACTCAATTTTGTCATCCCAAGT
113120579 TGTCTAG-CAACAATAACTTGCCACCC
65 TG-CTAGACAACAATAACTTGCCACCC
113120605 TAGATTACTT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
105 1 0.01
106 71 0.95
107 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (106 bp):
GATGGTTTACCATCCCGGATTGCACTACAATGATGGTTTCCAACTCAATTTTGTCATCCCAAGTT
GCTAGACAACAATAACTTGCCACCCCGAATTACCCAGCAAT
Found at i:113121739 original size:22 final size:22
Alignment explanation
Indices: 113121711--113121755 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
113121701 CCCTAGTAAC
113121711 TGAAGTTCTACTACTTTTATGA
1 TGAAGTTCTACTACTTTTATGA
*
113121733 TGAAGTTCTATTACTTTTATGA
1 TGAAGTTCTACTACTTTTATGA
113121755 T
1 T
113121756 TTAGTCCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (22 bp):
TGAAGTTCTACTACTTTTATGA
Found at i:113123096 original size:138 final size:138
Alignment explanation
Indices: 113122848--113123115 Score: 401
Period size: 138 Copynumber: 1.9 Consensus size: 138
113122838 TTGACATGAT
* * * *
113122848 GCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
1 GCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACC
** * * * **
113122913 ATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
66 ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
113122978 GTCACGCA
131 GTCACGCA
* * *
113122986 GCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCGTGGTATCTTTCAACC
1 GCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACC
*
113123051 ATGGTCTTCCACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
66 ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
113123116 TTCAGAGAGC
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 115 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (138 bp):
GCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACC
ATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
GTCACGCA
Found at i:113123113 original size:46 final size:46
Alignment explanation
Indices: 113122847--113123115 Score: 351
Period size: 46 Copynumber: 5.8 Consensus size: 46
113122837 TTTGACATGA
* * * *
113122847 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
* *
113122893 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
113122939 TGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * ** *
113122985 AGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * *
113123031 TGCCGTGGTATCTTTCAACCATGGTCTTCCACATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
*
113123077 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
113123116 TTCAGAGAGC
Statistics
Matches: 196, Mismatches: 26, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
45 4 0.02
46 192 0.98
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:113125007 original size:31 final size:32
Alignment explanation
Indices: 113124950--113125029 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 32
113124940 AAAATAACAA
*
113124950 TAATAAAATAATAAAATATCTTATTAAA-ATAT
1 TAATAAAATAATAAAATATCTAATTAAATA-AT
**
113124982 TAATAAAATAAT-ATTTATCTAATTAAATAAT
1 TAATAAAATAATAAAATATCTAATTAAATAAT
113125013 T-ATAAAAT-ATCAAAATA
1 TAATAAAATAAT-AAAATA
113125030 GCTCTAGCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.05
30 7 0.17
31 18 0.45
32 13 0.32
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (32 bp):
TAATAAAATAATAAAATATCTAATTAAATAAT
Found at i:113128143 original size:18 final size:19
Alignment explanation
Indices: 113128108--113128150 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
113128098 TCCAACCAAA
*
113128108 ATTTCATTTTGAAAAGAAT
1 ATTTAATTTTGAAAAGAAT
*
113128127 TTTTAATTTTG-AAAGAAT
1 ATTTAATTTTGAAAAGAAT
113128145 ATTTAA
1 ATTTAA
113128151 CCTAACCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTTAATTTTGAAAAGAAT
Found at i:113131493 original size:13 final size:13
Alignment explanation
Indices: 113131475--113131501 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
113131465 GCTCGTCAGG
113131475 GACACGCTCGTGT
1 GACACGCTCGTGT
113131488 GACACGCTCGTGT
1 GACACGCTCGTGT
113131501 G
1 G
113131502 CAATTGCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:113138487 original size:18 final size:18
Alignment explanation
Indices: 113138464--113138534 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
113138454 AATTAGGGTT
*
113138464 ATTTCGGTTTCAATTTTA
1 ATTTCGATTTCAATTTTA
** *
113138482 ATTTCGATTTTGATTTTG
1 ATTTCGATTTCAATTTTA
* **
113138500 ATTTCGATTTCTATTTCG
1 ATTTCGATTTCAATTTTA
* *
113138518 ATTTTGATTACAATTTT
1 ATTTCGATTTCAATTTT
113138535 GAAACACTCA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (18 bp):
ATTTCGATTTCAATTTTA
Found at i:113138491 original size:6 final size:6
Alignment explanation
Indices: 113138482--113138526 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
113138472 TTCAATTTTA
* * * *
113138482 ATTTCG ATTTTG ATTTTG ATTTCG ATTTCT ATTTCG ATTTTG ATT
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATT
113138527 ACAATTTTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.18, C:0.09, G:0.13, T:0.60
Consensus pattern (6 bp):
ATTTCG
Found at i:113138502 original size:12 final size:12
Alignment explanation
Indices: 113138482--113138536 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
113138472 TTCAATTTTA
* *
113138482 ATTTCGATTTTG
1 ATTTTGATTTCG
113138494 ATTTTGATTTCG
1 ATTTTGATTTCG
113138506 ATTTCT-ATTTCG
1 ATTT-TGATTTCG
* *
113138518 ATTTTGATTACA
1 ATTTTGATTTCG
113138530 ATTTTGA
1 ATTTTGA
113138537 AACACTCACT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 1 0.03
12 35 0.95
13 1 0.03
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.56
Consensus pattern (12 bp):
ATTTTGATTTCG
Found at i:113138575 original size:18 final size:18
Alignment explanation
Indices: 113138554--113138596 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
113138544 ACTGATTCTG
*
113138554 ATTTAGATTTTGATTTCA
1 ATTTAGATTTTGATCTCA
* *
113138572 ATTTTGATTTTGATCTCG
1 ATTTAGATTTTGATCTCA
113138590 ATTTAGA
1 ATTTAGA
113138597 ATTAGAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.53
Consensus pattern (18 bp):
ATTTAGATTTTGATCTCA
Found at i:113138795 original size:48 final size:48
Alignment explanation
Indices: 113138741--113138864 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 48
113138731 CCATGTGCAT
* * *
113138741 GATGTTTATTGTTTGTATCTGCCATTGTACGAATGCCATTATCAGACA
1 GATGTTTATTGTGTATATCTGCCATTGTACGAATGCCATTATCAAACA
* * *
113138789 GATGTTTATTGTGTATATCTGCCATTGTATGAATGCTATTATCAAACT
1 GATGTTTATTGTGTATATCTGCCATTGTACGAATGCCATTATCAAACA
*
113138837 GATGTTTATTGGGTATATCTGCCATTGT
1 GATGTTTATTGTGTATATCTGCCATTGT
113138865 TTGTATCCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (48 bp):
GATGTTTATTGTGTATATCTGCCATTGTACGAATGCCATTATCAAACA
Found at i:113139199 original size:15 final size:15
Alignment explanation
Indices: 113139179--113139207 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
113139169 GAAGAAAACA
113139179 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
113139194 TGTCTGGTAGTGAT
1 TGTCTGGTAGTGAT
113139208 AGTGATGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.38, T:0.41
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:113140963 original size:40 final size:40
Alignment explanation
Indices: 113140865--113140966 Score: 168
Period size: 40 Copynumber: 2.5 Consensus size: 40
113140855 TTAGTGAATG
* * *
113140865 TTTTTTAATATGCATGTACTGATTGTTGGTGTGTTGACTA
1 TTTTTTAATATGCATGCAGTGATTGTTGATGTGTTGACTA
*
113140905 TTTTTTAATATGCATGCAGTGATTGTTGATGTGTTGCCTA
1 TTTTTTAATATGCATGCAGTGATTGTTGATGTGTTGACTA
113140945 TTTTTTAATATGCATGCAGTGA
1 TTTTTTAATATGCATGCAGTGA
113140967 GTATTTTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.48
Consensus pattern (40 bp):
TTTTTTAATATGCATGCAGTGATTGTTGATGTGTTGACTA
Found at i:113141091 original size:37 final size:37
Alignment explanation
Indices: 113140988--113141113 Score: 198
Period size: 38 Copynumber: 3.4 Consensus size: 37
113140978 ATAATATGCA
* *
113140988 TGTTGGTGGGGCTGGTTTTTTAGGGGTGTATGTATCAT
1 TGTTGGTGGGGCT-ATTTTTTAGGGGTGTGTGTATCAT
*
113141026 TTTTGGTGGGGCTATTTTTTTAGGGGTGTGTGTATCAT
1 TGTTGGTGGGGCTA-TTTTTTAGGGGTGTGTGTATCAT
*
113141064 TGTTGGTGGGGCTATTTTTTAAGGGTGTGTGTATCAT
1 TGTTGGTGGGGCTATTTTTTAGGGGTGTGTGTATCAT
113141101 TGTTGGTGGGGCT
1 TGTTGGTGGGGCT
113141114 GTTCACAATG
Statistics
Matches: 82, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
37 35 0.43
38 47 0.57
ACGTcount: A:0.10, C:0.06, G:0.38, T:0.46
Consensus pattern (37 bp):
TGTTGGTGGGGCTATTTTTTAGGGGTGTGTGTATCAT
Found at i:113141773 original size:21 final size:21
Alignment explanation
Indices: 113141743--113141789 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
113141733 AAGTTGATGT
* *
113141743 CCCAACTCAGCAACAGGCTAC
1 CCCAAATCAGCAAAAGGCTAC
*
113141764 CCCAAATCAGCAAAAGGGTAC
1 CCCAAATCAGCAAAAGGCTAC
113141785 CCCAA
1 CCCAA
113141790 CTCAACAGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.09
Consensus pattern (21 bp):
CCCAAATCAGCAAAAGGCTAC
Found at i:113142298 original size:18 final size:18
Alignment explanation
Indices: 113142275--113142309 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
113142265 TTCTAACAAC
*
113142275 TGTGTGACTATTGAGAAA
1 TGTGTGACAATTGAGAAA
*
113142293 TGTGTGAGAATTGAGAA
1 TGTGTGACAATTGAGAA
113142310 TTGAGAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.31
Consensus pattern (18 bp):
TGTGTGACAATTGAGAAA
Found at i:113145003 original size:17 final size:17
Alignment explanation
Indices: 113144983--113145015 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
113144973 TCATTATAAG
*
113144983 AAAAATTAAATTAAACA
1 AAAAAATAAATTAAACA
113145000 AAAAAATAAATTAAAC
1 AAAAAATAAATTAAAC
113145016 TTATTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAATAAATTAAACA
Found at i:113145653 original size:21 final size:22
Alignment explanation
Indices: 113145594--113145656 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 22
113145584 GAGGGGTCGA
*
113145594 AATTAAATT-ATAATTTTTATAAT
1 AATTAAATTAAT-A-TTTTATAAG
*
113145617 AATAAAATGTAA-ATTTTA-AAG
1 AATTAAAT-TAATATTTTATAAG
113145638 AATTAAATTAATATTTTAT
1 AATTAAATTAATATTTTAT
113145657 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 3 0.09
21 15 0.45
22 5 0.15
23 8 0.24
24 1 0.03
25 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (22 bp):
AATTAAATTAATATTTTATAAG
Found at i:113145664 original size:30 final size:29
Alignment explanation
Indices: 113145630--113145695 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 29
113145620 AAAATGTAAA
*
113145630 TTTTAAAGAATTAAATTA-ATATTTTATTAT
1 TTTTAAAGAATTAAAATATA-ATTTTATT-T
113145660 TTTTAAAGAATTAAAATATAATTTTATTT
1 TTTTAAAGAATTAAAATATAATTTTATTT
113145689 TTATTAA
1 TT-TTAA
113145696 TTTAAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 3 0.09
30 29 0.88
31 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (29 bp):
TTTTAAAGAATTAAAATATAATTTTATTT
Found at i:113156065 original size:12 final size:12
Alignment explanation
Indices: 113156048--113156072 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113156038 AATAATTTAA
113156048 TCTTTTCTTTTT
1 TCTTTTCTTTTT
113156060 TCTTTTCTTTTT
1 TCTTTTCTTTTT
113156072 T
1 T
113156073 TTACATTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TCTTTTCTTTTT
Done.