Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 344 of 373
Found at i:114960374 original size:30 final size:28
Alignment explanation
Indices: 114960335--114960393 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
114960325 TGAATATTTG
*
114960335 TTTTATTGAATTTATCTTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
114960364 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
114960393 T
1 T
114960394 ATAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:114960792 original size:23 final size:23
Alignment explanation
Indices: 114960765--114960851 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
114960755 GCTTTATCGA
* * *
114960765 TCAGGCACTTTATGTATCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
114960788 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
114960809 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
114960831 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
114960852 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
21 35 0.65
22 2 0.04
23 17 0.31
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:114961034 original size:18 final size:19
Alignment explanation
Indices: 114961013--114961053 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
114961003 AATGAAATGA
114961013 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
114961031 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
114961050 GAAA
1 GAAA
114961054 ACATGAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:114963290 original size:14 final size:15
Alignment explanation
Indices: 114963269--114963298 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
114963259 AAATTCTTTT
114963269 CTTTTTTTTTCTTAA
1 CTTTTTTTTTCTTAA
114963284 CTTTTTTTTTCTTAA
1 CTTTTTTTTTCTTAA
114963299 GAATGTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (15 bp):
CTTTTTTTTTCTTAA
Found at i:114969727 original size:30 final size:30
Alignment explanation
Indices: 114969688--114969749 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
114969678 TACATGAAAT
114969688 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TATA-TGAA
114969719 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATGGAAATGGATGATACATGTATATGAA
114969748 AC
1 AC
114969750 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATATGAA
Found at i:114972100 original size:25 final size:25
Alignment explanation
Indices: 114972072--114972131 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
114972062 CCTTATAATA
114972072 TGAAAATGACTGTTTTGCCCCTAGG
1 TGAAAATGACTGTTTTGCCCCTAGG
114972097 TGAAAATGACTGTTTTGCCCCTAGG
1 TGAAAATGACTGTTTTGCCCCTAGG
*
114972122 TAAAAATGAC
1 TGAAAATGAC
114972132 CATTATACCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (25 bp):
TGAAAATGACTGTTTTGCCCCTAGG
Found at i:114972142 original size:25 final size:25
Alignment explanation
Indices: 114972089--114972146 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
114972079 GACTGTTTTG
* ** * *
114972089 CCCCTAGGTGAAAATGACTGTTTTG
1 CCCCTAGGTAAAAATGACCATTATA
114972114 CCCCTAGGTAAAAATGACCATTATA
1 CCCCTAGGTAAAAATGACCATTATA
114972139 CCCCTAGG
1 CCCCTAGG
114972147 GTTTATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (25 bp):
CCCCTAGGTAAAAATGACCATTATA
Found at i:114972213 original size:20 final size:20
Alignment explanation
Indices: 114972190--114972248 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
114972180 TAAACATGGT
114972190 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
114972210 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
114972230 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
114972249 GGTATTCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:114972230 original size:11 final size:11
Alignment explanation
Indices: 114972194--114972248 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
114972184 CATGGTATGT
114972194 ATGATATGCAC
1 ATGATATGCAC
* *
114972205 ATGACATG--T
1 ATGATATGCAC
114972214 ATGATATGCAC
1 ATGATATGCAC
*
114972225 ATGATATG--T
1 ATGATATGCAC
114972234 ATGATATGCAC
1 ATGATATGCAC
114972245 ATGA
1 ATGA
114972249 GGTATTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:114972327 original size:24 final size:24
Alignment explanation
Indices: 114972299--114972467 Score: 261
Period size: 24 Copynumber: 7.1 Consensus size: 24
114972289 GACGAAGTGC
114972299 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
114972323 GAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
114972347 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
114972371 GAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
114972395 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
114972419 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
114972442 AAAACGGCTT-TGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
114972465 AAA
1 AAA
114972468 GAGGCTAGGC
Statistics
Matches: 133, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
23 36 0.27
24 97 0.73
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:114974244 original size:33 final size:33
Alignment explanation
Indices: 114974202--114974275 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
114974192 CTGTTTTCTT
* *
114974202 TTGGAAATCAACAATTTGTCATTATATTTGTTG
1 TTGGAAATCAACAATTTGCCATTATATTTGCTG
* * *
114974235 TTGGAAATCAATAGTTTGCCATTGTATTTGCTG
1 TTGGAAATCAACAATTTGCCATTATATTTGCTG
114974268 TTGGAAAT
1 TTGGAAAT
114974276 TAAGCATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.43
Consensus pattern (33 bp):
TTGGAAATCAACAATTTGCCATTATATTTGCTG
Found at i:114976517 original size:42 final size:42
Alignment explanation
Indices: 114976460--114976575 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
114976450 TAGGGTTAAT
* * * *
114976460 GAGACTACTTGTAAGACCATATCTAGGATATGGCATCGACAT
1 GAGAATACATGTAAGACCATATCTGGGATATGGCATCGACAC
* ** * *
114976502 GAGACAT-CGTGTAAGACCATAGATGGGCTATTGGCATCGATAC
1 GAGA-ATACATGTAAGACCATATCTGGGATA-TGGCATCGACAC
*
114976545 GAGATTACATGTAAGACCATATCTGGGATAT
1 GAGAATACATGTAAGACCATATCTGGGATAT
114976576 AGTGTAACAC
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (42 bp):
GAGAATACATGTAAGACCATATCTGGGATATGGCATCGACAC
Found at i:114981515 original size:12 final size:12
Alignment explanation
Indices: 114981494--114981546 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
114981484 GATTTTATTT
*
114981494 GTTTTCTTTTTA
1 GTTTTATTTTTA
114981506 GTTTTATTTTTA
1 GTTTTATTTTTA
* *
114981518 TTTTTATGTTTA
1 GTTTTATTTTTA
* *
114981530 TTTTTGTTTTTA
1 GTTTTATTTTTA
114981542 GTTTT
1 GTTTT
114981547 TTTCTTAAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.77
Consensus pattern (12 bp):
GTTTTATTTTTA
Found at i:114981521 original size:18 final size:18
Alignment explanation
Indices: 114981495--114981546 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
114981485 ATTTTATTTG
*
114981495 TTTTCTTTTTAGTTTTAT
1 TTTTATTTTTAGTTTTAT
114981513 TTTTATTTTTA-TGTTTAT
1 TTTTATTTTTAGT-TTTAT
*
114981531 TTTTGTTTTTAGTTTT
1 TTTTATTTTTAGTTTT
114981547 TTTCTTAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 1 0.03
18 28 0.93
19 1 0.03
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.79
Consensus pattern (18 bp):
TTTTATTTTTAGTTTTAT
Found at i:114982871 original size:2 final size:2
Alignment explanation
Indices: 114982866--114982986 Score: 235
Period size: 2 Copynumber: 61.0 Consensus size: 2
114982856 TATATATATA
114982866 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
114982908 TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
114982949 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
114982987 ATTATATTGA
Statistics
Matches: 118, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 117 0.99
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:114984050 original size:39 final size:39
Alignment explanation
Indices: 114983996--114984292 Score: 357
Period size: 39 Copynumber: 7.5 Consensus size: 39
114983986 TAATGGACAA
*
114983996 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
114984035 TTATATCCAGGCTAAGGCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
114984074 TTATATTCGGGCTAAG-CTCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTC-CCGAAGGCATTCGTGCTGGTG
114984113 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* **
114984152 TTTTATCCGGGCTAAACCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
114984191 TTATATCTGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
114984230 TTATATTCGGGCTTAAAGTCCCGCATGC-TTTGTGCTGGTA
1 TTATATCCGGGC-T-AAGTCCCGAAGGCATTCGTGCTGGTG
*
114984270 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
114984293 CATGCTTTGT
Statistics
Matches: 232, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.00
39 172 0.74
40 59 0.25
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:114984351 original size:38 final size:38
Alignment explanation
Indices: 114984309--114984387 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
114984299 TTGTGGCGGT
114984309 GATTGGATTTGGGTTTTAAACCTAGCAGATTTAATGCC
1 GATTGGATTTGGGTTTTAAACCTAGCAGATTTAATGCC
114984347 GATTGGATTTGGGTTTTAAACCTAGCAGATTTAATGCC
1 GATTGGATTTGGGTTTTAAACCTAGCAGATTTAATGCC
114984385 GAT
1 GAT
114984388 GATTGGAGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.37
Consensus pattern (38 bp):
GATTGGATTTGGGTTTTAAACCTAGCAGATTTAATGCC
Found at i:114998969 original size:8 final size:8
Alignment explanation
Indices: 114998956--114998987 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
114998946 ATACAAAAGT
114998956 TTTTTTTA
1 TTTTTTTA
114998964 TTTTTTTA
1 TTTTTTTA
114998972 TTTTTTTA
1 TTTTTTTA
114998980 TTTTTTTA
1 TTTTTTTA
114998988 ATGAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTTA
Found at i:115000538 original size:7 final size:7
Alignment explanation
Indices: 115000526--115000559 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
115000516 TCCGAACGTG
115000526 ATTAAAA
1 ATTAAAA
115000533 ATTAAAA
1 ATTAAAA
*
115000540 ACTAAAA
1 ATTAAAA
115000547 ATT-AAA
1 ATTAAAA
115000553 ATTAAAA
1 ATTAAAA
115000560 TCAGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (7 bp):
ATTAAAA
Found at i:115002301 original size:19 final size:17
Alignment explanation
Indices: 115002216--115002292 Score: 52
Period size: 19 Copynumber: 4.4 Consensus size: 17
115002206 TATTATTTAA
*
115002216 TAATTTTTTCATTTATG
1 TAATTTTTTAATTTATG
115002233 TAATTTTAATTAA-TT-T-
1 TAATTTT--TTAATTTATG
* *
115002249 TAATTTTTAAATATTATT
1 TAATTTTTTAAT-TTATG
*
115002267 TAATATTTTTCCATTTATG
1 TAAT-TTTTT-AATTTATG
115002286 TAATTTT
1 TAATTTT
115002293 AATTAATTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 15
0.70 0.07 0.22
Matches are distributed among these distances:
14 3 0.06
16 9 0.19
17 9 0.19
18 9 0.19
19 15 0.32
20 2 0.04
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (17 bp):
TAATTTTTTAATTTATG
Found at i:115002308 original size:53 final size:54
Alignment explanation
Indices: 115002188--115002301 Score: 203
Period size: 53 Copynumber: 2.1 Consensus size: 54
115002178 ATGGTAAGGG
* *
115002188 TTAATTTTAATTTTTGAATATTATTTAATAATTTTTTCATTTATGTAATTTTAA
1 TTAATTTTAATTTTTAAATATTATTTAATAATTTTTCCATTTATGTAATTTTAA
115002242 TTAATTTTAATTTTTAAATATTATTTAAT-ATTTTTCCATTTATGTAATTTTAA
1 TTAATTTTAATTTTTAAATATTATTTAATAATTTTTCCATTTATGTAATTTTAA
115002295 TTAATTT
1 TTAATTT
115002302 GTATTTTATA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
53 30 0.52
54 28 0.48
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (54 bp):
TTAATTTTAATTTTTAAATATTATTTAATAATTTTTCCATTTATGTAATTTTAA
Found at i:115003242 original size:18 final size:20
Alignment explanation
Indices: 115003200--115003236 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
115003190 ATATTTTATG
*
115003200 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
115003219 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
115003237 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:115005439 original size:46 final size:46
Alignment explanation
Indices: 115005387--115005706 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
115005377 AGTGTGCTCT
115005387 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
115005433 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
115005479 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
115005525 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
115005571 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
115005617 GTGACATGAAATGAATAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
115005663 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
115005707 TCATGTCAAA
Statistics
Matches: 247, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 246 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:115009254 original size:7 final size:7
Alignment explanation
Indices: 115009242--115009273 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
115009232 AGTCGTTTCA
115009242 TATTTAG
1 TATTTAG
115009249 TATTTAG
1 TATTTAG
115009256 TATTTAG
1 TATTTAG
*
115009263 TATATAG
1 TATTTAG
115009270 TATT
1 TATT
115009274 ATGTATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (7 bp):
TATTTAG
Found at i:115009261 original size:14 final size:14
Alignment explanation
Indices: 115009242--115009282 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
115009232 AGTCGTTTCA
*
115009242 TATTTAGTATTTAG
1 TATTTAGTATATAG
115009256 TATTTAGTATATAG
1 TATTTAGTATATAG
115009270 TA-TTATGTATATA
1 TATTTA-GTATATA
115009283 ACTAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 3 0.12
14 22 0.88
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (14 bp):
TATTTAGTATATAG
Found at i:115009915 original size:18 final size:18
Alignment explanation
Indices: 115009892--115009933 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
115009882 GCTAGGTGCA
*
115009892 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
115009910 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
115009928 TTTCCT
1 TATCCT
115009934 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:115011755 original size:18 final size:17
Alignment explanation
Indices: 115011712--115011756 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
115011702 TTAAAAAATG
115011712 AAAGTAATAGTAATAAT
1 AAAGTAATAGTAATAAT
* *
115011729 AATATTAATGGTAATAAT
1 AA-AGTAATAGTAATAAT
115011747 ATAAGTAATA
1 A-AAGTAATA
115011757 AATATTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.09
18 19 0.86
19 1 0.05
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (17 bp):
AAAGTAATAGTAATAAT
Found at i:115011895 original size:3 final size:3
Alignment explanation
Indices: 115011887--115012019 Score: 153
Period size: 3 Copynumber: 45.0 Consensus size: 3
115011877 TAGATATATG
* * * *
115011887 TAA TAA TAA T-A TAA TAG TAA TGA TAA TAA T-A TAA TAA TAG TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
115011933 TAG TAA TAA AAA TAA AAA TAA TAA AAA TAA TAC TAA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
115011981 TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
115012020 GACCGTAAAG
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
2 4 0.04
3 104 0.96
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:115012114 original size:10 final size:9
Alignment explanation
Indices: 115012099--115012135 Score: 51
Period size: 8 Copynumber: 4.2 Consensus size: 9
115012089 TAGTCATGAC
115012099 AATAATAGAA
1 AATAATA-AA
115012109 AATAATAAA
1 AATAATAAA
115012118 AATAA-AAA
1 AATAATAAA
115012126 AATAA-AAA
1 AATAATAAA
115012134 AA
1 AA
115012136 CTATGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 13 0.48
9 7 0.26
10 7 0.26
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (9 bp):
AATAATAAA
Found at i:115012129 original size:14 final size:16
Alignment explanation
Indices: 115012102--115012133 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
115012092 TCATGACAAT
115012102 AATAGAAAATAATAAA
1 AATAGAAAATAATAAA
115012118 AATA-AAAA-AATAAA
1 AATAGAAAATAATAAA
115012132 AA
1 AA
115012134 AACTATGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AATAGAAAATAATAAA
Found at i:115012192 original size:12 final size:11
Alignment explanation
Indices: 115012166--115012218 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 11
115012156 GAAATAACAG
*
115012166 TAATAAAAACAA
1 TAATAATAA-AA
115012178 TAATAATAAATA
1 TAATAATAAA-A
115012190 TAATAATAGAAAA
1 TAATAAT--AAAA
115012203 TAATAATGAAAA
1 TAATAAT-AAAA
115012215 TAAT
1 TAAT
115012219 TAATTTGAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
11 1 0.03
12 25 0.68
13 8 0.22
14 3 0.08
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:115014499 original size:126 final size:126
Alignment explanation
Indices: 115014270--115014660 Score: 543
Period size: 126 Copynumber: 3.1 Consensus size: 126
115014260 AAGCATGAAC
* * * *
115014270 TACTGTAGAAAAAGAGCGTTC-ACATTGGAGCATTTTTCAGAAATTTTGCTAACATTACATCCTG
1 TACTGTAGAAAAAGAGC-TTCTACGTAGGAGCTTTTTTCAGAAATTTTGCTGACATTACATCCTG
*
115014334 CTTGAAGTGTTTTTGATACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAT
65 CTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAT
* *
115014396 TACTGTAGAAAAAGAGCTTCTACGTAGGAGCTTTTTTCAGAAATTTTGATGACATTGCATCCTGC
1 TACTGTAGAAAAAGAGCTTCTACGTAGGAGCTTTTTTCAGAAATTTTGCTGACATTACATCCTGC
* * * ** *
115014461 TTGAAGCGTTGTTGACACTATTTGTTCAAAAATGTCTTCTCAAAATTATTTTTTCAAGAAT
66 TTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAT
* * * * * * *
115014522 TATTGTAGAAAAATGA-CATCTATGTGGGAGATTTTTTCAGAAATTTTGCTGACATTACATCTTC
1 TACTGTAGAAAAA-GAGCTTCTACGTAGGAGCTTTTTTCAGAAATTTTGCTGACATTACATCCTG
* * *
115014586 CTTGAGGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATCATTTTTTCAGGAAC
65 CTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAT
115014648 TACTGTAGAAAAA
1 TACTGTAGAAAAA
115014661 TCATAAACCT
Statistics
Matches: 231, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
125 3 0.01
126 226 0.98
127 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (126 bp):
TACTGTAGAAAAAGAGCTTCTACGTAGGAGCTTTTTTCAGAAATTTTGCTGACATTACATCCTGC
TTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAAT
Found at i:115015204 original size:19 final size:20
Alignment explanation
Indices: 115015182--115015229 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
115015172 ATTAAATTCT
115015182 TAAAAATAGAATAAA-ATTA
1 TAAAAATAGAATAAATATTA
* *
115015201 TAAAAATTGAATAAATTTTA
1 TAAAAATAGAATAAATATTA
115015221 TAAATAATA
1 TAAA-AATA
115015230 AAAACCCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 14 0.58
20 7 0.29
21 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
TAAAAATAGAATAAATATTA
Found at i:115018461 original size:124 final size:125
Alignment explanation
Indices: 115018219--115018463 Score: 406
Period size: 124 Copynumber: 2.0 Consensus size: 125
115018209 TATAAAATTT
115018219 TTGGCTTGTACTTAGGCCCTTGACGATTAGGATTCACTTTGGTACCAGTATTTTTTATTTATTTA
1 TTGGCTTGTACTTAGGCCCTTGACGATTAGGATTCACTTTGGTACCAGTATTTTTTATTTATTTA
* *
115018284 TTAAAAGTGAATAATTACATTACAATGAGGAAGGGAGAAAGGTTTACAAATACAAAGAAC
66 TTAAAAGTGAATAATTACATTACAATGAAGAAGGGAGAAAGATTTACAAATACAAAGAAC
* * *
115018344 TTGGCTTGTACTTAGTCCCTTGAC-AGTTAGGCTTCACTTTGGTGCCAGTACTTTTTTA-TTA-T
1 TTGGCTTGTACTTAGGCCCTTGACGA-TTAGGATTCACTTTGGTACCAGTA-TTTTTTATTTATT
115018406 TATTAAAAGTGAATAATTACATTACAATGAAGAAGGGAGAAAGATTTACAAATACAAA
64 TATTAAAAGTGAATAATTACATTACAATGAAGAAGGGAGAAAGATTTACAAATACAAA
115018464 AAAAATCCAA
Statistics
Matches: 113, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
124 58 0.51
125 48 0.42
126 7 0.06
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (125 bp):
TTGGCTTGTACTTAGGCCCTTGACGATTAGGATTCACTTTGGTACCAGTATTTTTTATTTATTTA
TTAAAAGTGAATAATTACATTACAATGAAGAAGGGAGAAAGATTTACAAATACAAAGAAC
Found at i:115022582 original size:18 final size:18
Alignment explanation
Indices: 115022555--115022739 Score: 139
Period size: 18 Copynumber: 10.3 Consensus size: 18
115022545 AATTGATCGG
*
115022555 TTATTTAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
115022573 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
*
115022591 -TATTCAGTAACTA-TTAA
1 TTATTCAGTAAC-AGTCAA
*
115022608 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
115022626 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAA
* *
115022645 TTATTTAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
115022663 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
115022681 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
115022700 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
115022717 TTATTCAGTAATAATCAA
1 TTATTCAGTAACAGTCAA
115022735 TTATT
1 TTATT
115022740 TTATACATTT
Statistics
Matches: 130, Mismatches: 25, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
17 19 0.15
18 96 0.74
19 15 0.12
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:115022958 original size:45 final size:45
Alignment explanation
Indices: 115022903--115023140 Score: 334
Period size: 45 Copynumber: 5.3 Consensus size: 45
115022893 ACAAATCTGG
* * * *
115022903 AACAGTAACAGTAACAGTATTCAACAGACAAAGTGCTGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
* * *
115022948 AACGGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGTT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
* *
115022993 AACAGTAATAGTAACAATATTCGACACACACAGTGCCGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
*
115023038 AACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
* * *
115023083 AATAGTAGCAGTAACAATATTCGACATACAAAGTGCCGAAGT-GGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAA-TCGGT
*
115023128 AACAGTAGCAGTA
1 AACAGTAACAGTA
115023141 GCGGTAACAG
Statistics
Matches: 174, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 173 0.99
46 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (45 bp):
AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
Found at i:115023911 original size:6 final size:6
Alignment explanation
Indices: 115023893--115023944 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
115023883 ACTTTTCCAA
*
115023893 TCAATT T-ACATT TTAATT TCAATT TCAATT TCAATT TCAATT TCAA-T
1 TCAATT TCA-ATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
115023940 TCAAT
1 TCAAT
115023945 AACAATTCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
5 6 0.14
6 35 0.83
7 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (6 bp):
TCAATT
Found at i:115023992 original size:21 final size:21
Alignment explanation
Indices: 115023917--115023998 Score: 53
Period size: 21 Copynumber: 3.8 Consensus size: 21
115023907 AATTTCAATT
*
115023917 TCAAT-TTCAATTTCAATTTCAA
1 TCAATATTCAA-TTCAATAT-AA
* *
115023939 TTCAATA-ACAATTCACATATAT
1 -TCAATATTCAATTCA-ATATAA
*
115023961 TC-ATAAATCAATTCAATATAA
1 TCAAT-ATTCAATTCAATATAA
*
115023982 TCAATATTCAATCCAAT
1 TCAATATTCAATTCAAT
115023999 TCATATAATC
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
20 2 0.04
21 20 0.43
22 14 0.30
23 11 0.23
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATATTCAATTCAATATAA
Found at i:115026430 original size:20 final size:20
Alignment explanation
Indices: 115026405--115026456 Score: 74
Period size: 17 Copynumber: 2.8 Consensus size: 20
115026395 TGGCTTAAAA
115026405 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
115026425 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
115026442 GTGGTAGTGGATTGT
1 TTGGTAGTGGATTGT
115026457 GNNNNNNNNN
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 16 0.57
20 12 0.43
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:115037298 original size:20 final size:20
Alignment explanation
Indices: 115037273--115037322 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
115037263 TGGCTTAAAA
115037273 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
115037293 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
115037310 GTGGTAGTGGATT
1 TTGGTAGTGGATT
115037323 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:115041937 original size:20 final size:20
Alignment explanation
Indices: 115041912--115041961 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
115041902 TGGCTTAAAA
115041912 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
115041932 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
115041949 GTGGTAGTGGATT
1 TTGGTAGTGGATT
115041962 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:115048512 original size:3 final size:3
Alignment explanation
Indices: 115048498--115048552 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
115048488 TATTCTAAAT
115048498 TAA TAA -AA TAA TAA TAA TAA TAA TAA TAAA TAA -AA CTAAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA -T-AA TAA TAA
115048543 TAA -AA TAA TA
1 TAA TAA TAA TA
115048553 TCTTCTATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
2 8 0.18
3 31 0.69
4 4 0.09
5 2 0.04
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:115048515 original size:6 final size:6
Alignment explanation
Indices: 115048498--115048552 Score: 55
Period size: 5 Copynumber: 9.3 Consensus size: 6
115048488 TATTCTAAAT
115048498 TAATAA -AATAA TAATAA TAATAA TAATAAA TAA-AA CTAAATAA -AATAA
1 TAATAA TAATAA TAATAA TAATAA TAAT-AA TAATAA -T-AATAA TAATAA
115048546 -AATAA TA
1 TAATAA TA
115048553 TCTTCTATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
5 17 0.40
6 17 0.40
7 7 0.16
8 2 0.05
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (6 bp):
TAATAA
Found at i:115056534 original size:11 final size:11
Alignment explanation
Indices: 115056518--115056542 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
115056508 ATCTAACTCG
115056518 AAAAATAAAAA
1 AAAAATAAAAA
115056529 AAAAATAAAAA
1 AAAAATAAAAA
115056540 AAA
1 AAA
115056543 TTTTGAGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAATAAAAA
Found at i:115060702 original size:42 final size:42
Alignment explanation
Indices: 115060655--115060739 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
115060645 TAACAACTTA
*
115060655 TCATGTGGCACTTTGGGATACAAAATTAAGGATGTTTTTGAG
1 TCATGTGGCACTTTGGGATACAAAATTAAGGATGTGTTTGAG
115060697 TCATGTGGCACTTTGGGATACAAAATTAAGGATGTGTTTGAG
1 TCATGTGGCACTTTGGGATACAAAATTAAGGATGTGTTTGAG
115060739 T
1 T
115060740 GAGAAATTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.09, G:0.27, T:0.35
Consensus pattern (42 bp):
TCATGTGGCACTTTGGGATACAAAATTAAGGATGTGTTTGAG
Found at i:115061239 original size:17 final size:16
Alignment explanation
Indices: 115061219--115061261 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
115061209 TTTATATTCT
115061219 TTTTTGTTAATTATTTA
1 TTTTT-TTAATTATTTA
* *
115061236 TTTTTATAGATTTTTTA
1 TTTTTTTA-ATTATTTA
115061253 TTTTTTTAA
1 TTTTTTTAA
115061262 AATTTATACT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 3 0.14
17 19 0.86
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (16 bp):
TTTTTTTAATTATTTA
Found at i:115085548 original size:9 final size:9
Alignment explanation
Indices: 115085536--115085575 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
115085526 AAAATAAAAA
*
115085536 AAAAATTGT
1 AAAAATTAT
115085545 AAAAATTAT
1 AAAAATTAT
*
115085554 AAAAATCAT
1 AAAAATTAT
115085563 AAAAAATTAT
1 -AAAAATTAT
115085573 AAA
1 AAA
115085576 CTGTATCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:115086913 original size:21 final size:19
Alignment explanation
Indices: 115086888--115086927 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
115086878 TAACATGTAA
115086888 TAAATTATTAACAATATTAAT
1 TAAATT-TTAA-AATATTAAT
*
115086909 TAAATTTTAATATATTAAT
1 TAAATTTTAAAATATTAAT
115086928 ATTAATATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAATTTTAAAATATTAAT
Found at i:115095429 original size:51 final size:51
Alignment explanation
Indices: 115095358--115095467 Score: 184
Period size: 51 Copynumber: 2.2 Consensus size: 51
115095348 CTGATCACAT
*
115095358 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
115095409 TTATCACTTGTCACTAATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
115095460 TTGTCACT
1 TTATCACT
115095468 GATCAGAAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:115101403 original size:47 final size:47
Alignment explanation
Indices: 115101294--115101404 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
115101284 CCGGGATAAG
*
115101294 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * * *
115101341 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
115101388 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
115101405 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:115102178 original size:4 final size:4
Alignment explanation
Indices: 115102169--115102197 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
115102159 CCCTTTTCTA
115102169 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
115102198 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:115103602 original size:6 final size:6
Alignment explanation
Indices: 115103591--115103620 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
115103581 ACTCAACTCT
115103591 CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA
115103621 ACACGGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:115106610 original size:3 final size:3
Alignment explanation
Indices: 115106597--115106641 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
115106587 GGAATCCAAT
* * *
115106597 AAG AGG AAG AAG AAG AAG AAG CAAG ACG AGG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AA
115106642 CCGGAGGAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.60, C:0.04, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:115111811 original size:16 final size:18
Alignment explanation
Indices: 115111779--115111816 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
115111769 GCCATGAACT
*
115111779 TTACTATTTTATTAAT-A
1 TTACTATTTTATAAATAA
115111796 TTACTA-TTTATAAATAA
1 TTACTATTTTATAAATAA
115111813 TTAC
1 TTAC
115111817 AAGGATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (18 bp):
TTACTATTTTATAAATAA
Found at i:115112385 original size:20 final size:20
Alignment explanation
Indices: 115112362--115112400 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
115112352 AATGATTCTG
115112362 CCATT-AATTTTAAGATTTAT
1 CCATTAAATTTTAA-ATTTAT
115112382 CCATTAAATTTTAAATTTA
1 CCATTAAATTTTAAATTTA
115112401 GGTTCAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (20 bp):
CCATTAAATTTTAAATTTAT
Found at i:115112891 original size:31 final size:32
Alignment explanation
Indices: 115112833--115112892 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
115112823 TTTTCAAATC
* *
115112833 ATTAAAAATTAATATCTAATGGTAAAATTTTA
1 ATTAAAAAATAATATCTAATGGCAAAATTTTA
*
115112865 ATTAAAAAATAA-ATTTAATGGCAAAATT
1 ATTAAAAAATAATATCTAATGGCAAAATT
115112893 AAATAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 14 0.56
32 11 0.44
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (32 bp):
ATTAAAAAATAATATCTAATGGCAAAATTTTA
Found at i:115112899 original size:29 final size:30
Alignment explanation
Indices: 115112835--115112909 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
115112825 TTCAAATCAT
* * *
115112835 TAAAAATTAATATCTAATGGTAAAATTTTAAT
1 TAAAAATTAA-ATTTAATGGCAAAA-TTTAAA
*
115112867 TAAAAAATAAATTTAATGGCAAAA-TTAAA
1 TAAAAATTAAATTTAATGGCAAAATTTAAA
*
115112896 TAAAATTTAAATTT
1 TAAAAATTAAATTT
115112910 TAGTAGCATA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 16 0.43
31 12 0.32
32 9 0.24
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (30 bp):
TAAAAATTAAATTTAATGGCAAAATTTAAA
Found at i:115113541 original size:3 final size:3
Alignment explanation
Indices: 115113533--115113559 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
115113523 GCCAAAACAT
115113533 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
115113560 CATTCCCACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:115122192 original size:26 final size:26
Alignment explanation
Indices: 115122136--115122185 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
115122126 TCTTTTTGTC
* *
115122136 AATTTGACCCATAATTTTTTAAGTTA
1 AATTTGACCCATAAATTTTTAAATTA
115122162 AATTTGACCC-TCAAATTTTTAAAT
1 AATTTGACCCAT-AAATTTTTAAAT
115122186 ATAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (26 bp):
AATTTGACCCATAAATTTTTAAATTA
Found at i:115122330 original size:10 final size:10
Alignment explanation
Indices: 115122315--115122351 Score: 65
Period size: 10 Copynumber: 3.6 Consensus size: 10
115122305 TCATGCTAAT
115122315 TTTTTATGAA
1 TTTTTATGAA
115122325 TTTTTATGAA
1 TTTTTATGAA
115122335 TTTTTATGAA
1 TTTTTATGAA
115122345 TATTTTA
1 T-TTTTA
115122352 ATAAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 21 0.81
11 5 0.19
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (10 bp):
TTTTTATGAA
Found at i:115122338 original size:21 final size:23
Alignment explanation
Indices: 115122312--115122360 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 23
115122302 ACTTCATGCT
*
115122312 AATTTTTTATGAAT-TTTT-ATG
1 AATTTTTTATGAATATTTTAATA
115122333 AA-TTTTTATGAATATTTTAATA
1 AATTTTTTATGAATATTTTAATA
115122355 AATTTT
1 AATTTT
115122361 AAATTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 11 0.46
21 6 0.25
22 4 0.17
23 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (23 bp):
AATTTTTTATGAATATTTTAATA
Found at i:115122349 original size:22 final size:20
Alignment explanation
Indices: 115122315--115122360 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
115122305 TCATGCTAAT
* *
115122315 TTTTTATGAATTTTTATGAA
1 TTTTTATGAATTTTAATAAA
115122335 TTTTTATGAATATTTTAATAAA
1 TTTTTATG-A-ATTTTAATAAA
115122357 TTTT
1 TTTT
115122361 AAATTATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 1 0.05
22 13 0.59
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTTTATGAATTTTAATAAA
Found at i:115124397 original size:22 final size:22
Alignment explanation
Indices: 115124367--115124415 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
115124357 GAAGCGCAGT
*
115124367 ATTTCTTTTTTTAAA-ACGA-A
1 ATTTTTTTTTTTAAATACGAGA
115124387 AGTTTTTTTTTTTAAATACGAGA
1 A-TTTTTTTTTTTAAATACGAGA
115124410 ATTTTT
1 ATTTTT
115124416 GAAAACACGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 13 0.52
22 9 0.36
23 2 0.08
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (22 bp):
ATTTTTTTTTTTAAATACGAGA
Found at i:115124414 original size:18 final size:18
Alignment explanation
Indices: 115124404--115124834 Score: 95
Period size: 17 Copynumber: 24.0 Consensus size: 18
115124394 TTTTTTAAAT
115124404 ACGAGAATTTTTGAAAAC
1 ACGAGAATTTTTGAAAAC
*
115124422 ACGAGAA--TTTGTAAAC
1 ACGAGAATTTTTGAAAAC
* *
115124438 ACGAAAATTTTAG-AAAC
1 ACGAGAATTTTTGAAAAC
* *
115124455 ACGAAAATTTTTGGAAAAAA
1 ACGAGAATTTTT-G-AAAAC
*
115124475 ACGA-AATTTTCTTAAAAC
1 ACGAGAATTTT-TGAAAAC
* *
115124493 ACGACATTTTTTTTTG-AAAC
1 ACGAGA---ATTTTTGAAAAC
*
115124513 ACGGGAATTTTT-AAAAC
1 ACGAGAATTTTTGAAAAC
* * *
115124530 AAGACATTTTTTTG-AAAC
1 ACGAGA-ATTTTTGAAAAC
* *
115124548 AC-A-ATTTTTTCTTAAAA-
1 ACGAGA-ATTTT-TGAAAAC
*
115124565 A--A-AA-TTTT--AAAT
1 ACGAGAATTTTTGAAAAC
115124577 ACGAGAATTTTT-AAAAC
1 ACGAGAATTTTTGAAAAC
*
115124594 ACGAAAATTTTT-AAAAC
1 ACGAGAATTTTTGAAAAC
* **
115124611 ACGGAAATATTTTTTTTTTTTTTAAAC
1 AC-GAGA-A-------TTTTTGAAAAC
*
115124638 ACGAAAATTTTTTCTGAAAAC
1 ACGAGAA-T-TTT-TGAAAAC
* *
115124659 AAGAAAATTTTTG-AAAC
1 ACGAGAATTTTTGAAAAC
*
115124676 ACTAGAA-TTTTGAAAAC
1 ACGAGAATTTTTGAAAAC
*
115124693 AC-AAAGATTTTTG-AAAC
1 ACGAGA-ATTTTTGAAAAC
*
115124710 ATGAGAATTTTT-AAAAGC
1 ACGAGAATTTTTGAAAA-C
* * *
115124728 ACGAGGATTATTGAAAGC
1 ACGAGAATTTTTGAAAAC
* * *
115124746 ACGAAAATTTGT-AAAAA
1 ACGAGAATTTTTGAAAAC
* *
115124763 ACGATAATTTTTG-AAAT
1 ACGAGAATTTTTGAAAAC
*
115124780 ACGAGAAATTTTT-TAAAC
1 ACGAG-AATTTTTGAAAAC
* * **
115124798 GCGAAAATTTTTTTCAAAC
1 ACGAGAA-TTTTTGAAAAC
* *
115124817 ACGAAAACTTTTGAAAAC
1 ACGAGAATTTTTGAAAAC
115124835 GCGAAAATTC
Statistics
Matches: 315, Mismatches: 53, Indels: 90
0.69 0.12 0.20
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
13 1 0.00
14 4 0.01
15 2 0.01
16 34 0.11
17 102 0.32
18 90 0.29
19 26 0.08
20 20 0.06
21 12 0.04
22 4 0.01
25 1 0.00
26 9 0.03
27 6 0.02
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.33
Consensus pattern (18 bp):
ACGAGAATTTTTGAAAAC
Found at i:115124432 original size:16 final size:16
Alignment explanation
Indices: 115124413--115124464 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
115124403 TACGAGAATT
*
115124413 TTTGAAAACACGAGAA
1 TTTGAAAACACGAAAA
*
115124429 TTTGTAAACACGAAAA
1 TTTGAAAACACGAAAA
*
115124445 TTTTAGAAACACGAAAA
1 TTTGA-AAACACGAAAA
115124462 TTT
1 TTT
115124465 TTGGAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (16 bp):
TTTGAAAACACGAAAA
Found at i:115124602 original size:17 final size:17
Alignment explanation
Indices: 115124564--115124843 Score: 123
Period size: 17 Copynumber: 15.4 Consensus size: 17
115124554 TTTTCTTAAA
* *
115124564 AAAAATTTT-AAATACG
1 AAAATTTTTAAAACACG
*
115124580 AGAATTTTTAAAACACG
1 AAAATTTTTAAAACACG
115124597 AAAATTTTTAAAACACGG
1 AAAATTTTTAAAACAC-G
*
115124615 AAATATTTTTTTTTTTTTTAAACACG
1 AAA-A--------TTTTTAAAACACG
*
115124641 AAAATTTTTTCTGAAAACAAG
1 AAAA--TTTT-T-AAAACACG
* *
115124662 AAAATTTTTGAAACACT
1 AAAATTTTTAAAACACG
* *
115124679 AGAATTTTGAAAACAC-
1 AAAATTTTTAAAACACG
* *
115124695 AAAGATTTTTGAAACATG
1 AAA-ATTTTTAAAACACG
*
115124713 AGAATTTTTAAAAGCACG
1 AAAATTTTTAAAA-CACG
** * *
115124731 AGGATTATTGAAAGCACG
1 AAAATT-TTTAAAACACG
* *
115124749 AAAATTTGTAAAAAACG
1 AAAATTTTTAAAACACG
* * *
115124766 ATAATTTTTGAAATACG
1 AAAATTTTTAAAACACG
* *
115124783 AGAAATTTTTTAAACGCG
1 A-AAATTTTTAAAACACG
*
115124801 AAAATTTTTTTCAAACACG
1 AAAA--TTTTTAAAACACG
* *
115124820 AAAACTTTTGAAAACGCG
1 AAAA-TTTTTAAAACACG
115124838 AAAATT
1 AAAATT
115124844 CGAAAATTTC
Statistics
Matches: 201, Mismatches: 43, Indels: 39
0.71 0.15 0.14
Matches are distributed among these distances:
16 9 0.04
17 84 0.42
18 50 0.25
19 31 0.15
20 1 0.00
21 10 0.05
25 1 0.00
26 4 0.02
27 11 0.05
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (17 bp):
AAAATTTTTAAAACACG
Found at i:115124637 original size:27 final size:25
Alignment explanation
Indices: 115124601--115124650 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
115124591 AACACGAAAA
115124601 TTTTTAAAACACGGAAATATTTTTTTT
1 TTTTTAAAACAC-GAAA-ATTTTTTTT
*
115124628 TTTTTTAAACACGAAAATTTTTT
1 TTTTTAAAACACGAAAATTTTTT
115124651 CTGAAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.32
26 4 0.18
27 11 0.50
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (25 bp):
TTTTTAAAACACGAAAATTTTTTTT
Found at i:115124688 original size:16 final size:16
Alignment explanation
Indices: 115124667--115124720 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
115124657 ACAAGAAAAT
115124667 TTTTGAAACACTAGAA
1 TTTTGAAACACTAGAA
* *
115124683 TTTTGAAAACACAAAGAT
1 TTTTG-AAACAC-TAGAA
115124701 TTTTGAAACA-TGAGAA
1 TTTTGAAACACT-AGAA
115124717 TTTT
1 TTTT
115124721 TAAAAGCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 12 0.39
17 11 0.35
18 8 0.26
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (16 bp):
TTTTGAAACACTAGAA
Found at i:115124811 original size:19 final size:19
Alignment explanation
Indices: 115124788--115124843 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
115124778 ATACGAGAAA
115124788 TTTTTT-AAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
* *
115124806 TTTTTTCAAACACGAAAA-
1 TTTTTTAAAACGCGAAAAT
* *
115124824 CTTTTGAAAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
115124843 T
1 T
115124844 CGAAAATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTTTTTAAAACGCGAAAAT
Found at i:115124887 original size:18 final size:17
Alignment explanation
Indices: 115124838--115124888 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
115124828 TGAAAACGCG
115124838 AAAATTCGAAAATTTCT
1 AAAATTCGAAAATTTCT
* * *
115124855 AAAATACGAGTAATTTTT
1 AAAATTCGA-AAATTTCT
115124873 AAAGATTCGAAAATTT
1 AAA-ATTCGAAAATTT
115124889 GAAACAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.30
18 14 0.52
19 5 0.19
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (17 bp):
AAAATTCGAAAATTTCT
Found at i:115125410 original size:26 final size:26
Alignment explanation
Indices: 115125371--115125427 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
115125361 CCTTTTTTTT
*
115125371 CTGCTGCAGGATTCGGGCCTGGGGGC
1 CTGCTGCAGAATTCGGGCCTGGGGGC
*
115125397 CTGCTGCCGAATTCGGGCCTGGGGGC
1 CTGCTGCAGAATTCGGGCCTGGGGGC
115125423 CTGCT
1 CTGCT
115125428 TGGTCTGCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.07, C:0.30, G:0.42, T:0.21
Consensus pattern (26 bp):
CTGCTGCAGAATTCGGGCCTGGGGGC
Found at i:115125559 original size:20 final size:19
Alignment explanation
Indices: 115125534--115125576 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
115125524 TGGCTGTGGC
115125534 CTGCTTCTATTTTATTTTTT
1 CTGCTT-TATTTTATTTTTT
* *
115125554 CTGCTTTGTTTTGTTTTTT
1 CTGCTTTATTTTATTTTTT
115125573 -TGCT
1 CTGCT
115125577 GCTTTGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.05, C:0.14, G:0.12, T:0.70
Consensus pattern (19 bp):
CTGCTTTATTTTATTTTTT
Found at i:115125578 original size:21 final size:20
Alignment explanation
Indices: 115125548--115125586 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
115125538 TTCTATTTTA
115125548 TTTTTTCTGCTTTGTTTTGT
1 TTTTTTCTGCTTTGTTTTGT
115125568 TTTTTTGCTGCTTTGTTTT
1 TTTTTT-CTGCTTTGTTTT
115125587 TTTCAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.00, C:0.10, G:0.15, T:0.74
Consensus pattern (20 bp):
TTTTTTCTGCTTTGTTTTGT
Found at i:115125781 original size:14 final size:14
Alignment explanation
Indices: 115125745--115125783 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
115125735 TTCTTTGCTA
*
115125745 TTTTTTTTGTTGTT
1 TTTTTTTTGCTGTT
* *
115125759 TCTTGTTTGCTGTT
1 TTTTTTTTGCTGTT
115125773 TTTTTTTTGCT
1 TTTTTTTTGCT
115125784 TATGCTTGCT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.00, C:0.08, G:0.15, T:0.77
Consensus pattern (14 bp):
TTTTTTTTGCTGTT
Found at i:115126177 original size:29 final size:29
Alignment explanation
Indices: 115126144--115126260 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
115126134 TGTAATTTTT
*
115126144 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
115126173 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
115126203 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
115126232 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
115126261 TTATTTTTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:115126199 original size:30 final size:30
Alignment explanation
Indices: 115126159--115126260 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
115126149 ATTTAGGATT
*
115126159 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
115126189 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
115126219 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
115126249 AAAATGCAATTT
1 AAAATGAAATTT
115126261 TTATTTTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:115126275 original size:14 final size:15
Alignment explanation
Indices: 115126256--115126290 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
115126246 GTCAAAATGC
115126256 AATTTTTATTTTT-A
1 AATTTTTATTTTTGA
*
115126270 AATTTTTTTTTTTGA
1 AATTTTTATTTTTGA
115126285 AATTTT
1 AATTTT
115126291 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:115126750 original size:53 final size:54
Alignment explanation
Indices: 115126532--115126786 Score: 387
Period size: 53 Copynumber: 4.8 Consensus size: 54
115126522 CACGTGAGCC
* *
115126532 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
*
115126587 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAG--A--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
115126637 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
115126691 AAGGCTCAACTTACCTCTCGCAATATG-GTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
115126744 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
115126787 CAAAGATTGA
Statistics
Matches: 185, Mismatches: 9, Indels: 13
0.89 0.04 0.06
Matches are distributed among these distances:
50 48 0.26
52 1 0.01
53 50 0.27
54 42 0.23
55 38 0.21
56 6 0.03
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:115126985 original size:72 final size:72
Alignment explanation
Indices: 115126745--115127303 Score: 834
Period size: 72 Copynumber: 7.7 Consensus size: 72
115126735 AGAAATTAAA
**
115126745 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
115126809 GTGTCTTG
65 GTGTCTTG
* *
115126817 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
115126882 GTGTCTTG
65 GTGTCTTG
* *
115126890 AGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115126955 TGTCTTG
66 TGTCTTG
* *
115126962 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115127027 TGTCTTG
66 TGTCTTG
* *
115127034 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
*
115127099 GTGTCCTG
65 GTGTCTTG
* *
115127107 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
115127172 TGTCCTG
66 TGTCTTG
* * *
115127179 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA
* *
115127244 GCGTGTCCTG
63 ACGTGTCTTG
** * *
115127254 AGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACATAAATT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
115127304 AAAAGGCTTA
Statistics
Matches: 451, Mismatches: 29, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
72 249 0.55
73 135 0.30
74 8 0.02
75 59 0.13
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:115127084 original size:145 final size:144
Alignment explanation
Indices: 115126745--115127303 Score: 834
Period size: 145 Copynumber: 3.8 Consensus size: 144
115126735 AGAAATTAAA
**
115126745 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
* * * *
115126809 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAAT
65 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGA-AAACAGAAATTGAAATT
115126874 ACCTCAACGTGTCTTG
129 ACCTCAACGTGTCTTG
* *
115126890 AGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
115126955 TGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTAC
*
115127020 CTCAATGTGTCTTG
131 CTCAACGTGTCTTG
* *
115127034 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
115127099 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTA
65 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTA
* *
115127164 CCTCAGCGTGTCCTG
130 CCTCAACGTGTCTTG
* * *
115127179 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA
* ** * * *
115127244 GCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACATAAATT
63 ACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTG-AAAACAGAAATT
115127304 AAAAGGCTTA
Statistics
Matches: 384, Mismatches: 24, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
144 71 0.18
145 231 0.60
146 8 0.02
147 72 0.19
148 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (144 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTAC
CTCAACGTGTCTTG
Found at i:115127536 original size:72 final size:72
Alignment explanation
Indices: 115127307--115128150 Score: 1349
Period size: 72 Copynumber: 11.7 Consensus size: 72
115127297 ATAAATTAAA
* ** *
115127307 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
115127368 GTGTCTTG
65 GTGTCTTG
* *
115127376 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
115127441 GTGTCTTG
65 GTGTCTTG
115127449 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115127514 TGTCTTG
66 TGTCTTG
115127521 AGGCTCAACTCATTTCTCGCAA-ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115127585 TGTCTTG
66 TGTCTTG
* *
115127592 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
115127657 GTGTCTTG
65 GTGTCTTG
*
115127665 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115127730 TGTCTTG
66 TGTCTTG
115127737 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115127802 TGTCTTG
66 TGTCTTG
115127809 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
115127874 TGTCTTG
66 TGTCTTG
* * *
115127881 AGGCTCCACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
*
115127946 GTGTCCTG
65 GTGTCTTG
* *
115127954 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
115128019 TGTCCTG
66 TGTCTTG
* * *
115128026 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA
* *
115128091 GCGTGTCCTG
63 ACGTGTCTTG
** * *
115128101 AGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACATAAATT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
115128151 AAAAGGCTTA
Statistics
Matches: 732, Mismatches: 31, Indels: 21
0.93 0.04 0.03
Matches are distributed among these distances:
69 25 0.03
70 3 0.00
71 74 0.10
72 357 0.49
73 206 0.28
74 8 0.01
75 59 0.08
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:115127744 original size:145 final size:144
Alignment explanation
Indices: 115127307--115128150 Score: 1333
Period size: 145 Copynumber: 5.8 Consensus size: 144
115127297 ATAAATTAAA
* ** * *
115127307 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAAATACCTCAAC
* *
115127368 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAAT
65 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATT
115127433 ACCTCAACGTGTCTTG
129 ACCTCAACGTGTCTTG
*
115127449 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
115127514 TGTCTTGAGGCTCAACTCATTTCTCGCAA-ATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
115127578 CTCAACGTGTCTTG
131 CTCAACGTGTCTTG
*
115127592 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAAATACCTCAAC
*
115127657 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAATTA
65 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
115127722 CCTCAACGTGTCTTG
130 CCTCAACGTGTCTTG
*
115127737 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
115127802 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
115127867 CTCAACGTGTCTTG
131 CTCAACGTGTCTTG
* *
115127881 AGGCTCCACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACCTCAAC
* *
115127946 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTA
65 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
* *
115128011 CCTCAGCGTGTCCTG
130 CCTCAACGTGTCTTG
* *
115128026 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATT-AAAATTACCTC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAAA-TACCTC
* * ** * *
115128090 AGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACATAAATT
62 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
115128151 AAAAGGCTTA
Statistics
Matches: 663, Mismatches: 27, Indels: 19
0.94 0.04 0.03
Matches are distributed among these distances:
142 25 0.04
143 73 0.11
144 215 0.32
145 267 0.40
146 12 0.02
147 69 0.10
148 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (144 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
CTCAACGTGTCTTG
Found at i:115127797 original size:847 final size:846
Alignment explanation
Indices: 115126745--115128277 Score: 2777
Period size: 847 Copynumber: 1.8 Consensus size: 846
115126735 AGAAATTAAA
*
115126745 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAGATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAGATTGAAAATACCTCAACG
*
115126810 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATA
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAACAGAAATTGAAAATA
115126875 CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAAAAATT
131 CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAAAAATT
115126940 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAC
196 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAC
*
115127005 AGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
261 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
115127070 TGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAG
326 TGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAG
115127135 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
391 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
115127200 ATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
456 ATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
115127265 ACCTCTAGCAATATGAGTTGATTTTGAAAAACATAAATTAAAAGGCTTAACTCACCTCTCGCAAT
521 ACCTCTAGCAATATGAGTTGATTTTGAAAAACATAAATTAAAAGGCTTAACTCACCTCTCGCAAT
* * * * * *
115127330 ATGAGTCAATTTAAAACA-AAGATTGAAATTACCTCAACGTG-TCTTGAGGCTCAACTCATTTCT
586 ATGAGTCAATTTAAAACATAA-ACTAAAAATACCTCAACGTGCCCCT-AGGCTCAACTCACTTCT
* *
115127393 CGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC
649 CGCAATATGAGTTGAATTTTGAAAAACAGAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAAC
115127458 TCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAG
713 TCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAG
115127523 GCTCAACTCATTTCTCGCAAATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGT
778 GCTCAACTCATTTCTCGCAAATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGT
115127588 CTTG
843 CTTG
** *
115127592 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAA-ATTGAAAATACCTCAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACA-AAGATTGAAAATACCTCAA
* *
115127656 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACATAAATTGAAAT
64 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAACAGAAATTGAAAA
* *
115127720 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAA
129 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAAAAA
*
115127785 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
194 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAA
*
115127850 ACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCCACTCATTTCTCGCAATATGAGTTGAAT
259 ACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
115127915 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATA
324 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATA
115127980 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
389 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
115128045 CAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAAC
454 CAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAAC
115128110 TCACCTCTAGCAATATGAGTTGATTTTGAAAAACATAAATTAAAAGGCTTAACTCACCTCTCGCA
519 TCACCTCTAGCAATATGAGTTGATTTTGAAAAACATAAATTAAAAGGCTTAACTCACCTCTCGCA
***
115128175 ATATGAGTCAATTTAAAACATAAACTAAAAATACCTTGGCGTGCCCCTAGGCTCAACTCACTTCT
584 ATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGCCCCTAGGCTCAACTCACTTCT
*
115128240 CGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
649 CGCAATATGAGTTGAATTTTGAAAAACAGAAATTAAAA
115128278 GGCTCAACTC
Statistics
Matches: 658, Mismatches: 24, Indels: 9
0.95 0.03 0.01
Matches are distributed among these distances:
846 4 0.01
847 581 0.88
848 71 0.11
849 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (846 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAGATTGAAAATACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAACAGAAATTGAAAATA
CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAAAAATT
GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAC
AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
TGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAG
TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
ACCTCTAGCAATATGAGTTGATTTTGAAAAACATAAATTAAAAGGCTTAACTCACCTCTCGCAAT
ATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGCCCCTAGGCTCAACTCACTTCTCG
CAATATGAGTTGAATTTTGAAAAACAGAAATTAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
TTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCT
CAACTCATTTCTCGCAAATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTT
G
Found at i:115140090 original size:16 final size:16
Alignment explanation
Indices: 115140071--115140142 Score: 72
Period size: 16 Copynumber: 4.3 Consensus size: 16
115140061 CGAAAGTTTT
*
115140071 TTTTTAAATACGAGAA
1 TTTTTAAACACGAGAA
115140087 TTTTTGAAAACACGAGAA
1 TTTTT--AAACACGAGAA
* *
115140105 TTTGTAAACACGAAAA
1 TTTTTAAACACGAGAA
* *
115140121 TTTTAGAAACACGAAAA
1 TTTT-TAAACACGAGAA
115140138 TTTTT
1 TTTTT
115140143 GGAAAAAAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
16 18 0.38
17 15 0.32
18 14 0.30
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (16 bp):
TTTTTAAACACGAGAA
Found at i:115140090 original size:18 final size:18
Alignment explanation
Indices: 115140080--115140507 Score: 107
Period size: 17 Copynumber: 24.0 Consensus size: 18
115140070 TTTTTTAAAT
115140080 ACGAGAATTTTTGAAAAC
1 ACGAGAATTTTTGAAAAC
*
115140098 ACGAGAA--TTTGTAAAC
1 ACGAGAATTTTTGAAAAC
* *
115140114 ACGAAAATTTTAG-AAAC
1 ACGAGAATTTTTGAAAAC
* *
115140131 ACGAAAATTTTTGGAAAAAA
1 ACGAGAATTTTT-G-AAAAC
*
115140151 ACGA-AATTTTCTTAAAAC
1 ACGAGAATTTT-TGAAAAC
* *
115140169 ACGACATTTTTTTTTG-AAAC
1 ACGAGA---ATTTTTGAAAAC
*
115140189 ACGGGAATTTTT-AAAAC
1 ACGAGAATTTTTGAAAAC
* * *
115140206 AAGACATTTTTTG-AAAC
1 ACGAGAATTTTTGAAAAC
* *
115140223 AC-A-ATTTTTTCTTAAAA-
1 ACGAGA-ATTTT-TGAAAAC
*
115140240 A--A-AA-TTTT--AAAT
1 ACGAGAATTTTTGAAAAC
115140252 ACGAGAATTTTT-AAAAC
1 ACGAGAATTTTTGAAAAC
* *
115140269 ACGAAAAGTTTT-AAAAC
1 ACGAGAATTTTTGAAAAC
* **
115140286 ACGGAAATATTTTTTTTTTTTAAAC
1 AC-GAGA-A-----TTTTTGAAAAC
*
115140311 ACGAAAATTTTTTCTGAAAAC
1 ACGAGAA--TTTT-TGAAAAC
* *
115140332 AAGAAAATTTTTG-AAAC
1 ACGAGAATTTTTGAAAAC
*
115140349 ACTAGAA-TTTTGAAAAC
1 ACGAGAATTTTTGAAAAC
*
115140366 AC-AAAGATTTTTG-AAAC
1 ACGAGA-ATTTTTGAAAAC
*
115140383 ATGAGAATTTTT-AAAAGC
1 ACGAGAATTTTTGAAAA-C
* * *
115140401 ACGAGGATTATTGAAAGC
1 ACGAGAATTTTTGAAAAC
* * *
115140419 ACGAAAATTTGT-AAAAA
1 ACGAGAATTTTTGAAAAC
* *
115140436 ACGACAATTTTTG-AAAT
1 ACGAGAATTTTTGAAAAC
*
115140453 ACGAGAAATTTTT-TAAAC
1 ACGAG-AATTTTTGAAAAC
* * **
115140471 GCGAAAATTTTTTTCAAAC
1 ACGAGAA-TTTTTGAAAAC
* *
115140490 ACGAAAACTTTTGAAAAC
1 ACGAGAATTTTTGAAAAC
115140508 GCGAAAATTC
Statistics
Matches: 313, Mismatches: 55, Indels: 84
0.69 0.12 0.19
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
13 1 0.00
14 4 0.01
15 3 0.01
16 33 0.11
17 110 0.35
18 80 0.26
19 25 0.08
20 22 0.07
21 12 0.04
22 4 0.01
23 1 0.00
24 8 0.03
25 6 0.02
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (18 bp):
ACGAGAATTTTTGAAAAC
Found at i:115140090 original size:20 final size:18
Alignment explanation
Indices: 115140046--115140091 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 18
115140036 GAAGCGCAGT
115140046 ATTTCTTTTTTAAAACGAA
1 ATTT-TTTTTTAAAACGAA
115140065 AGTTTTTTTTTAAATACGAGA
1 A-TTTTTTTTTAAA-ACGA-A
115140086 ATTTTT
1 ATTTTT
115140092 GAAAACACGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.52
Consensus pattern (18 bp):
ATTTTTTTTTAAAACGAA
Found at i:115140310 original size:25 final size:23
Alignment explanation
Indices: 115140277--115140323 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
115140267 ACACGAAAAG
115140277 TTTTAAAACACGGAAATATTTTTTT
1 TTTTAAAACAC-GAAA-ATTTTTTT
*
115140302 TTTTTAAACACGAAAATTTTTT
1 TTTTAAAACACGAAAATTTTTT
115140324 CTGAAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 4 0.19
25 10 0.48
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTTAAAACACGAAAATTTTTTT
Found at i:115140323 original size:17 final size:17
Alignment explanation
Indices: 115140301--115140516 Score: 119
Period size: 17 Copynumber: 12.1 Consensus size: 17
115140291 AATATTTTTT
*
115140301 TTTTTTAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
115140318 TTTTTTCTGAAAACAAGAAAA
1 --TTTT-T-AAAACACGAAAA
* * *
115140339 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAAAA
*
115140356 TTTTGAAAACAC-AAAGA
1 TTTTTAAAACACGAAA-A
* * *
115140373 TTTTTGAAACATGAGAA
1 TTTTTAAAACACGAAAA
**
115140390 TTTTTAAAAGCACGAGGA
1 TTTTTAAAA-CACGAAAA
* *
115140408 TTATTGAAAGCACGAAAA
1 TT-TTTAAAACACGAAAA
* * *
115140426 TTTGTAAAAAACGACAA
1 TTTTTAAAACACGAAAA
* *
115140443 TTTTTGAAATACGAGAAA
1 TTTTTAAAACACGA-AAA
* *
115140461 TTTTTTAAACGCGAAAA
1 TTTTTAAAACACGAAAA
*
115140478 TTTTTTTCAAACACGAAAA
1 --TTTTTAAAACACGAAAA
* *
115140497 CTTTTGAAAACGCGAAAA
1 -TTTTTAAAACACGAAAA
115140515 TT
1 TT
115140517 CGAAAATTTC
Statistics
Matches: 150, Mismatches: 38, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
16 2 0.01
17 63 0.42
18 46 0.31
19 28 0.19
20 1 0.01
21 10 0.07
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:115140361 original size:16 final size:16
Alignment explanation
Indices: 115140340--115140393 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
115140330 ACAAGAAAAT
115140340 TTTTGAAACACTAGAA
1 TTTTGAAACACTAGAA
* *
115140356 TTTTGAAAACACAAAGAT
1 TTTTG-AAACAC-TAGAA
115140374 TTTTGAAACA-TGAGAA
1 TTTTGAAACACT-AGAA
115140390 TTTT
1 TTTT
115140394 TAAAAGCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 12 0.39
17 11 0.35
18 8 0.26
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (16 bp):
TTTTGAAACACTAGAA
Found at i:115140484 original size:19 final size:19
Alignment explanation
Indices: 115140461--115140516 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
115140451 ATACGAGAAA
115140461 TTTTTT-AAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
* *
115140479 TTTTTTCAAACACGAAAA-
1 TTTTTTAAAACGCGAAAAT
* *
115140497 CTTTTGAAAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
115140516 T
1 T
115140517 CGAAAATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTTTTTAAAACGCGAAAAT
Found at i:115140560 original size:18 final size:17
Alignment explanation
Indices: 115140511--115140561 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
115140501 TGAAAACGCG
115140511 AAAATTCGAAAATTTCT
1 AAAATTCGAAAATTTCT
* * *
115140528 AAAATACGAGTAATTTTT
1 AAAATTCGA-AAATTTCT
115140546 AAAGATTCGAAAATTT
1 AAA-ATTCGAAAATTT
115140562 GAAACAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.30
18 14 0.52
19 5 0.19
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (17 bp):
AAAATTCGAAAATTTCT
Found at i:115141099 original size:25 final size:26
Alignment explanation
Indices: 115141044--115141099 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
115141034 CCTTTTTTTT
*
115141044 CTGCTGCAGGATTCGGGCCTGGGGGC
1 CTGCTGCAGAATTCGGGCCTGGGGGC
*
115141070 CTGCTGCCGAATTCGGGCCT-GGGGC
1 CTGCTGCAGAATTCGGGCCTGGGGGC
115141095 CTGCT
1 CTGCT
115141100 TGGTCTGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.07, C:0.30, G:0.41, T:0.21
Consensus pattern (26 bp):
CTGCTGCAGAATTCGGGCCTGGGGGC
Found at i:115141231 original size:20 final size:19
Alignment explanation
Indices: 115141206--115141249 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
115141196 TGGCTGTGGC
115141206 CTGCTTCTATTTTATTTTTT
1 CTGCTT-TATTTTATTTTTT
* *
115141226 CTGCTTTGTTTTGTTTTTT
1 CTGCTTTATTTTATTTTTT
*
115141245 TTGCT
1 CTGCT
115141250 GCTTTGTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.05, C:0.14, G:0.11, T:0.70
Consensus pattern (19 bp):
CTGCTTTATTTTATTTTTT
Found at i:115141242 original size:19 final size:21
Alignment explanation
Indices: 115141206--115141259 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
115141196 TGGCTGTGGC
*
115141206 CTGCTTCTATTTTA-TTTTTT-
1 CTGCTT-TGTTTTATTTTTTTG
*
115141226 CTGCTTTGTTTTGTTTTTTTTG
1 CTGCTTTGTTTT-ATTTTTTTG
115141248 CTGCTTTGTTTT
1 CTGCTTTGTTTT
115141260 TTTCAAAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 5 0.17
20 6 0.21
21 6 0.21
22 12 0.41
ACGTcount: A:0.04, C:0.13, G:0.13, T:0.70
Consensus pattern (21 bp):
CTGCTTTGTTTTATTTTTTTG
Found at i:115141261 original size:19 final size:19
Alignment explanation
Indices: 115141215--115141262 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
115141205 CCTGCTTCTA
*
115141215 TTTTATTTTTTCTGCTTTG
1 TTTTTTTTTTTCTGCTTTG
115141234 TTTTGTTTTTTTTGCTGCTTTG
1 -TTT-TTTTTTTT-CTGCTTTG
115141256 TTTTTTT
1 TTTTTTT
115141263 CAAAAACCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 7 0.28
21 10 0.40
22 8 0.32
ACGTcount: A:0.02, C:0.08, G:0.12, T:0.77
Consensus pattern (19 bp):
TTTTTTTTTTTCTGCTTTG
Found at i:115141842 original size:29 final size:29
Alignment explanation
Indices: 115141809--115141925 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
115141799 TGTAATTTTT
*
115141809 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
115141838 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
115141868 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
115141897 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
115141926 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:115141864 original size:30 final size:30
Alignment explanation
Indices: 115141824--115141925 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
115141814 ATTTAGGATT
*
115141824 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
115141854 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
115141884 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
115141914 AAAATGCAATTT
1 AAAATGAAATTT
115141926 TTATTTTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:115141948 original size:14 final size:15
Alignment explanation
Indices: 115141924--115141956 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
115141914 AAAATGCAAT
115141924 TTTTATTTTTTAAAA
1 TTTTATTTTTTAAAA
*
115141939 TTTT-TTTTTTGAAA
1 TTTTATTTTTTAAAA
115141953 TTTT
1 TTTT
115141957 GAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
TTTTATTTTTTAAAA
Found at i:115142212 original size:34 final size:34
Alignment explanation
Indices: 115142169--115142237 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
115142159 ACTGTATGAT
*
115142169 AGCCTAGAATATTTAGATAAATTTTCAATTGAGA
1 AGCCTAGAATATTTAGATAAATTTTCAATTAAGA
115142203 AGCCTAGAATATTTAGATAAATTTTCAATTAAGA
1 AGCCTAGAATATTTAGATAAATTTTCAATTAAGA
115142237 A
1 A
115142238 AAATTAGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (34 bp):
AGCCTAGAATATTTAGATAAATTTTCAATTAAGA
Found at i:115142840 original size:42 final size:42
Alignment explanation
Indices: 115142777--115142943 Score: 172
Period size: 42 Copynumber: 4.0 Consensus size: 42
115142767 GTTTCCGTTC
* *
115142777 AACCCTAAAGGGTTTCCGTTCAGCACTTTTGAGCTTCTGTTT
1 AACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCTGTTT
* * * *
115142819 AACCCTAATGGGTCTCTGTTCAGCTCTTTTGAGCTTCTGTTT
1 AACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCTGTTT
* * * * * ** *
115142861 AACCCTTATTGGTTTCCGTTAAGCTCTCATGAGCTTCCATTC
1 AACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCTGTTT
* * * *
115142903 AACCCTTATGGGTTTCTGTTTAGCACTTATGTGCTTCTGTT
1 AACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCTGTT
115142944 CAGCCTTCGG
Statistics
Matches: 103, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 103 1.00
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (42 bp):
AACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCTGTTT
Found at i:115142907 original size:84 final size:84
Alignment explanation
Indices: 115142787--115142943 Score: 197
Period size: 84 Copynumber: 1.9 Consensus size: 84
115142777 AACCCTAAAG
* ** ** * * *
115142787 GGTTTCCGTTCAGCACTTTTGAGCTTCTGTTTAACCCTAATGGGTCTCTGTTCAGCTCTTTTGAG
1 GGTTTCCGTTAAGCACTCATGAGCTTCCATTCAACCCTAATGGGTCTCTGTTCAGCACTTATGAG
115142852 CTTCTGTTTAACCCTTATT
66 CTTCTGTTTAACCCTTATT
* * * * *
115142871 GGTTTCCGTTAAGCTCTCATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTTAGCACTTATGTG
1 GGTTTCCGTTAAGCACTCATGAGCTTCCATTCAACCCTAATGGGTCTCTGTTCAGCACTTATGAG
115142936 CTTCTGTT
66 CTTCTGTT
115142944 CAGCCTTCGG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.43
Consensus pattern (84 bp):
GGTTTCCGTTAAGCACTCATGAGCTTCCATTCAACCCTAATGGGTCTCTGTTCAGCACTTATGAG
CTTCTGTTTAACCCTTATT
Found at i:115145356 original size:21 final size:21
Alignment explanation
Indices: 115145332--115145374 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
115145322 TAATTATCTT
* *
115145332 ATAATTGCGCATTGATTTGTA
1 ATAATTGCACATTAATTTGTA
*
115145353 ATAATTGCATATTAATTTGTA
1 ATAATTGCACATTAATTTGTA
115145374 A
1 A
115145375 ATTTTTGTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (21 bp):
ATAATTGCACATTAATTTGTA
Found at i:115146765 original size:32 final size:32
Alignment explanation
Indices: 115146728--115146809 Score: 119
Period size: 32 Copynumber: 2.6 Consensus size: 32
115146718 TTGAAATTAG
*
115146728 TTTGTTGGATTTTGAAATTATTATGTCTTAAA
1 TTTGTTGGATATTGAAATTATTATGTCTTAAA
* * *
115146760 TTTGTTAGATATTGAATTTATTATGTTTTAAA
1 TTTGTTGGATATTGAAATTATTATGTCTTAAA
*
115146792 CTTGTTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
115146810 GATTGACAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.52
Consensus pattern (32 bp):
TTTGTTGGATATTGAAATTATTATGTCTTAAA
Found at i:115153218 original size:40 final size:40
Alignment explanation
Indices: 115153174--115153253 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
115153164 ATTTTCAATA
*
115153174 ACAATTGAAGGTTAAAATATGCCACAAATCTTTATACTCT
1 ACAATTGAAGGTTAAAATATGCCACAAAACTTTATACTCT
*
115153214 ACAATTGAAGGTTAAAATATGCCACAAAACTTTCTACTCT
1 ACAATTGAAGGTTAAAATATGCCACAAAACTTTATACTCT
115153254 TTGTAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (40 bp):
ACAATTGAAGGTTAAAATATGCCACAAAACTTTATACTCT
Found at i:115157410 original size:11 final size:11
Alignment explanation
Indices: 115157383--115157421 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
115157373 ACTATACGGC
*
115157383 AATAATAATAGA
1 AATAATTATA-A
115157395 AATAATTATAA
1 AATAATTATAA
*
115157406 AATAATTAAAA
1 AATAATTATAA
115157417 AATAA
1 AATAA
115157422 AAATATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
AATAATTATAA
Found at i:115161580 original size:20 final size:21
Alignment explanation
Indices: 115161540--115161593 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
115161530 ACAAATAAAG
*
115161540 TAAAAATTTTAAAAAGATTCA
1 TAAAAATTATAAAAAGATTCA
115161561 -AACAAATTATAAAAAG-TTCA
1 TAA-AAATTATAAAAAGATTCA
115161581 TAAAAATTA-AAAA
1 TAAAAATTATAAAA
115161594 TAGTATGTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.13
20 12 0.40
21 14 0.47
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.28
Consensus pattern (21 bp):
TAAAAATTATAAAAAGATTCA
Found at i:115163854 original size:21 final size:21
Alignment explanation
Indices: 115163820--115163859 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
115163810 AAACAGTATC
*
115163820 TCCTTTCTTCATTTGTTTACA
1 TCCTTTCTTCATTTATTTACA
115163841 TCCTTTCTGT-ATTTATTTA
1 TCCTTTCT-TCATTTATTTA
115163860 TTTTATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.15, C:0.20, G:0.05, T:0.60
Consensus pattern (21 bp):
TCCTTTCTTCATTTATTTACA
Found at i:115171958 original size:52 final size:52
Alignment explanation
Indices: 115171880--115171983 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
115171870 CAAACGTATC
*
115171880 TGTGGTTATTGTAGTACAAAGGATCAAGTGTTGCAAAAGCAGGACCAATCGA
1 TGTGGTTATTGCAGTACAAAGGATCAAGTGTTGCAAAAGCAGGACCAATCGA
115171932 TGTGGTTATTGCAGTACAAAGGATCAAGTGTTGCAAAAGCAGGACCAATCGA
1 TGTGGTTATTGCAGTACAAAGGATCAAGTGTTGCAAAAGCAGGACCAATCGA
115171984 GCAAGCATTG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (52 bp):
TGTGGTTATTGCAGTACAAAGGATCAAGTGTTGCAAAAGCAGGACCAATCGA
Found at i:115178531 original size:15 final size:16
Alignment explanation
Indices: 115178491--115178529 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
115178481 TTTGGGAAAG
*
115178491 AAATTCAAATTTT-AA
1 AAATTAAAATTTTAAA
*
115178506 AATTTAAAATTTTAAA
1 AAATTAAAATTTTAAA
115178522 AAATTAAA
1 AAATTAAA
115178530 TTCTAAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAAAATTTTAAA
Found at i:115178893 original size:31 final size:31
Alignment explanation
Indices: 115178827--115178905 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
115178817 CTGGTCACTG
* **
115178827 AACTATTTGAAAGTTTTCATTTAAGCCATTG
1 AACTATTTAAAAGTTTTCATTTAAGCCATCA
* *
115178858 AACTATTTAAAAGTTTTTATTTAA-CTTATCA
1 AACTATTTAAAAGTTTTCATTTAAGC-CATCA
*
115178889 AACTATTCAAAAGTTTT
1 AACTATTTAAAAGTTTT
115178906 ATTCAAGTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.44
Consensus pattern (31 bp):
AACTATTTAAAAGTTTTCATTTAAGCCATCA
Found at i:115182088 original size:33 final size:33
Alignment explanation
Indices: 115182050--115182205 Score: 113
Period size: 33 Copynumber: 4.7 Consensus size: 33
115182040 CATTGACGGA
*
115182050 TAAGACCATGGTTGGGCCATGGCAATATATGTG
1 TAAGACCATAGTTGGGCCATGGCAATATATGTG
* * * * *
115182083 TAAGACCATAGCTAGGCTATGGC-ATCCTGATG-A
1 TAAGACCATAGTTGGGCCATGGCAAT-AT-ATGTG
** ** *
115182116 TAAGACCATA-TCTGGGATATGGCACCACGA-GTG
1 TAAGACCATAGT-TGGGCCATGGCAATA-TATGTG
* *
115182149 TAAGACCATGGTTGGGCCATGGCAATACATGTG
1 TAAGACCATAGTTGGGCCATGGCAATATATGTG
* *
115182182 TAAGACCGTAGTTGGACCATGGCA
1 TAAGACCATAGTTGGGCCATGGCA
115182206 TCATATCAGA
Statistics
Matches: 92, Mismatches: 23, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
32 4 0.04
33 84 0.91
34 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (33 bp):
TAAGACCATAGTTGGGCCATGGCAATATATGTG
Found at i:115182268 original size:45 final size:45
Alignment explanation
Indices: 115182219--115182330 Score: 170
Period size: 45 Copynumber: 2.5 Consensus size: 45
115182209 TATCAGAAAT
*
115182219 GAGTAAGACTATAGCTGAAAGACGCTATGGCATCACGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAAAC
* *
115182264 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCGCGATTCAAAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAAAC
* * *
115182309 GTGTAAGACCATGGTTGAAAGA
1 GAGTAAGACCATAGCTGAAAGA
115182331 TACCCTGGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCAAAC
Found at i:115182340 original size:45 final size:45
Alignment explanation
Indices: 115182219--115182389 Score: 144
Period size: 45 Copynumber: 3.8 Consensus size: 45
115182209 TATCAGAAAT
* * *
115182219 GAGTAAGACTATAGCTGAAAGACGCTATGGCATCACGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGACACCATGGCATCACGATTCAAAC
* * * *
115182264 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCGCGATTCAAAT
1 GAGTAAGACCATAGCTGAAAGACACCATGGCATCACGATTCAAAC
* * * * * * * *** *
115182309 GTGTAAGACCATGGTTGAAAGATACCCTGGCAACATGACAGAAAAT
1 GAGTAAGACCATAGCTGAAAGACACCATGGCATCACGA-TTCAAAC
* * *
115182355 GAGTAAGACCATAGTTGAAAAACACTATGGCATCA
1 GAGTAAGACCATAGCTGAAAGACACCATGGCATCA
115182390 TGTCGAAGAT
Statistics
Matches: 102, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 70 0.69
46 32 0.31
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.20
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACACCATGGCATCACGATTCAAAC
Found at i:115183619 original size:57 final size:58
Alignment explanation
Indices: 115183558--115183666 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
115183548 TCTTGTTTCC
* **
115183558 AACATATGCTCATA-AGAGCTTA-ATCAAGATTACCCGTCCGGGCTAAATCCTATCTAT
1 AACATATGCTCA-AGAGAGCTTATATCAAGATTACCAGTCCAAGCTAAATCCTATCTAT
* * *
115183615 AACATATGCTCAAGAGGGCTTATATTAGGATTACCAGTCCAAGCTAAATCCT
1 AACATATGCTCAAGAGAGCTTATATCAAGATTACCAGTCCAAGCTAAATCCT
115183667 TTCTGTAATG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.02
57 19 0.43
58 24 0.55
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (58 bp):
AACATATGCTCAAGAGAGCTTATATCAAGATTACCAGTCCAAGCTAAATCCTATCTAT
Found at i:115188911 original size:28 final size:28
Alignment explanation
Indices: 115188850--115188977 Score: 184
Period size: 28 Copynumber: 4.5 Consensus size: 28
115188840 CATGAGATTG
* * *
115188850 GCACTAAGTGTGCGGGTTTAAATTACATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
115188879 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
115188907 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
115188936 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
115188964 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
115188978 GACTTGCTAT
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 46 0.51
29 44 0.49
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:115188939 original size:57 final size:57
Alignment explanation
Indices: 115188850--115188977 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
115188840 CATGAGATTG
*
115188850 GCACTAAGTGTGCGGGTTTAAATTACATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTACATAGCACTAAGTGTGCAAGTTTGATTATATA
* ** *
115188907 GCACTAAGTGTGCGAGTTT-GATTATGTAAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTACAT-AGCACTAAGTGTGCAAGTTTGATTATATA
*
115188964 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
115188978 GACTTGCTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 5 0.08
57 59 0.92
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTACATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:115191716 original size:28 final size:28
Alignment explanation
Indices: 115191684--115191811 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
115191674 ATAGCAAGTC
*
115191684 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
115191712 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
115191741 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
115191769 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
115191798 CGCACACTTAGTGC
1 CGCACACTTAGTGC
115191812 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:115191774 original size:57 final size:57
Alignment explanation
Indices: 115191683--115191811 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
115191673 TATAGCAAGT
*
115191683 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
115191740 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
115191797 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
115191812 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:115198215 original size:23 final size:23
Alignment explanation
Indices: 115198187--115198236 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
115198177 GGGTGTTACA
115198187 TTTACTATATATTAAATTAAGAT
1 TTTACTATATATTAAATTAAGAT
*
115198210 TTTACTATATATTAACTTAAGAT
1 TTTACTATATATTAAATTAAGAT
115198233 TTTA
1 TTTA
115198237 TAAATTTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (23 bp):
TTTACTATATATTAAATTAAGAT
Found at i:115200102 original size:114 final size:119
Alignment explanation
Indices: 115199923--115200144 Score: 269
Period size: 114 Copynumber: 1.9 Consensus size: 119
115199913 AATTAATAGT
* * *
115199923 TATTTAGACTTCTTTTTCATTATATTAACTTTATTTTATGCAACAACAAAATATCACTACCATAG
1 TATTTAGACTTCTTTTTCATAATATTAAC-TTATTATAAGCAACAACAAAATATCACTACCATAG
* * * *
115199988 AGTTATTTTCA-TAGTATAATTTATGTAAAAAATATTTTAATTATCAAGAAAATTTA
65 AATTATTATCATTA-CATAATTTATGT-AAAAATATTATAATTATCAAGAAAATTTA
* * *
115200044 TATTTAGACTT-TTTTTCATAATA-TAAC-TATTATAAGTAA-AA-AAAA-ATCATTACTATAGA
1 TATTTAGACTTCTTTTTCATAATATTAACTTATTATAAGCAACAACAAAATATCACTACCATAGA
*
115200103 ATTATTATCATTACATATTTTATGTAAAAATATTATAATTAT
66 ATTATTATCATTACATAATTTATGTAAAAATATTATAATTAT
115200145 TTTAAAATGT
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
113 16 0.18
114 30 0.34
115 6 0.07
116 2 0.02
117 9 0.10
119 4 0.04
120 11 0.12
121 11 0.12
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (119 bp):
TATTTAGACTTCTTTTTCATAATATTAACTTATTATAAGCAACAACAAAATATCACTACCATAGA
ATTATTATCATTACATAATTTATGTAAAAATATTATAATTATCAAGAAAATTTA
Done.