Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 345 of 373
Found at i:115200321 original size:17 final size:15
Alignment explanation
Indices: 115200302--115200340 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
115200292 TTGTTTGATA
*
115200302 AAAATAATATAATCAT
1 AAAATAATATAA-AAT
115200318 AAAATAA-ATAAAAT
1 AAAATAATATAAAAT
115200332 AAAATAATA
1 AAAATAATA
115200341 ATTGGATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 9 0.43
15 5 0.24
16 7 0.33
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATAATATAAAAT
Found at i:115200332 original size:22 final size:22
Alignment explanation
Indices: 115200299--115200341 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
115200289 AGATTGTTTG
* *
115200299 ATAAAAATAATATAATCATAAA
1 ATAAAAATAATAAAATAATAAA
115200321 ATAAATAA-AATAAAATAATAA
1 ATAAA-AATAATAAAATAATAA
115200342 TTGGATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (22 bp):
ATAAAAATAATAAAATAATAAA
Found at i:115205884 original size:9 final size:9
Alignment explanation
Indices: 115205870--115205895 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
115205860 GTTATATATA
115205870 TATAATAAC
1 TATAATAAC
115205879 TATAATAAC
1 TATAATAAC
115205888 TATAATAA
1 TATAATAA
115205896 AAATCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (9 bp):
TATAATAAC
Found at i:115206280 original size:16 final size:17
Alignment explanation
Indices: 115206261--115206293 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
115206251 AATTTATTTC
115206261 ATAAATAATA-TTAATA
1 ATAAATAATATTTAATA
*
115206277 ATAATTAATATTTAATA
1 ATAAATAATATTTAATA
115206294 TATATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAAATAATATTTAATA
Found at i:115209411 original size:4 final size:4
Alignment explanation
Indices: 115209402--115209435 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
115209392 GAGCAAACGT
115209402 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
115209436 GGGAAATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:115213832 original size:23 final size:23
Alignment explanation
Indices: 115213806--115213857 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
115213796 AATTAAAAAG
115213806 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
115213829 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
115213852 ATGAAA
1 ATGAAA
115213858 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:115213920 original size:9 final size:9
Alignment explanation
Indices: 115213908--115213939 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
115213898 ACAAATATTA
115213908 AAAATAAAC
1 AAAATAAAC
115213917 AAAATAAAC
1 AAAATAAAC
115213926 AAAATAAAC
1 AAAATAAAC
115213935 AAAAT
1 AAAAT
115213940 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:115218294 original size:23 final size:23
Alignment explanation
Indices: 115218268--115218319 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
115218258 AATTAAAAAG
115218268 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
115218291 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
115218314 ATGAAA
1 ATGAAA
115218320 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:115218382 original size:9 final size:9
Alignment explanation
Indices: 115218370--115218401 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
115218360 ACAAATATTA
115218370 AAAATAAAC
1 AAAATAAAC
115218379 AAAATAAAC
1 AAAATAAAC
115218388 AAAATAAAC
1 AAAATAAAC
115218397 AAAAT
1 AAAAT
115218402 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:115223868 original size:28 final size:28
Alignment explanation
Indices: 115223828--115223886 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
115223818 ATTTAAGCTT
*
115223828 TAAAGCTT-TTTAAAAAATGAATAAAAAA
1 TAAAGCTTCTTAAAAAAAT-AATAAAAAA
115223856 TAAAGCTTCTTAAAAAAATAATAAAAAA
1 TAAAGCTTCTTAAAAAAATAATAAAAAA
115223884 TAA
1 TAA
115223887 GATTCGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 20 0.69
29 9 0.31
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (28 bp):
TAAAGCTTCTTAAAAAAATAATAAAAAA
Found at i:115225507 original size:21 final size:20
Alignment explanation
Indices: 115225481--115225520 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
115225471 GTAAAAAATG
*
115225481 TTTATTGTATAAAAATGAAAC
1 TTTATT-TACAAAAATGAAAC
*
115225502 TTTATTTCCAAAAATGAAA
1 TTTATTTACAAAAATGAAA
115225521 ATATGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (20 bp):
TTTATTTACAAAAATGAAAC
Found at i:115226228 original size:16 final size:16
Alignment explanation
Indices: 115226203--115226233 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
115226193 TATACAAAAA
*
115226203 AAAACTAAATTCAATC
1 AAAACGAAATTCAATC
115226219 AAAACGAAATTCAAT
1 AAAACGAAATTCAAT
115226234 TATATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.16, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAACGAAATTCAATC
Found at i:115227583 original size:17 final size:19
Alignment explanation
Indices: 115227563--115227600 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
115227553 AAGTGAATTG
115227563 AAATTGC-GAAATT-AAAT
1 AAATTGCAGAAATTGAAAT
115227580 AAATTGCAGAAATTGAAAT
1 AAATTGCAGAAATTGAAAT
115227599 AA
1 AA
115227601 GAAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.26
Consensus pattern (19 bp):
AAATTGCAGAAATTGAAAT
Found at i:115228319 original size:20 final size:20
Alignment explanation
Indices: 115228296--115228343 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
115228286 TAAATTCTAA
*
115228296 AAAGATAAATACAA-TTAATT
1 AAAGATAAATA-AAGATAATT
115228316 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
115228336 AAA-ATAAA
1 AAAGATAAA
115228344 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:115228354 original size:19 final size:18
Alignment explanation
Indices: 115228330--115228373 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
115228320 ATAAATAAAG
115228330 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
115228350 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
115228367 ATAATTA
1 ATAATTA
115228374 TCCTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:115228388 original size:15 final size:15
Alignment explanation
Indices: 115228368--115228397 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
115228358 ATAATCCTAA
115228368 TAATTATCCTAATAT
1 TAATTATCCTAATAT
115228383 TAATTATCCTAATAT
1 TAATTATCCTAATAT
115228398 AAATAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:115231335 original size:21 final size:21
Alignment explanation
Indices: 115231309--115231351 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
115231299 ATTTAACCAT
115231309 AAACCAATATAAATACGAAAA
1 AAACCAATATAAATACGAAAA
115231330 AAACCAATATAAATACGAAAA
1 AAACCAATATAAATACGAAAA
115231351 A
1 A
115231352 GCTCTGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.67, C:0.14, G:0.05, T:0.14
Consensus pattern (21 bp):
AAACCAATATAAATACGAAAA
Found at i:115241167 original size:28 final size:30
Alignment explanation
Indices: 115241135--115241191 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 30
115241125 AATAGGAGTT
* *
115241135 AATTTTAATT-TTTTAAA-TATAAGGATTA
1 AATTTCAATTGTTGTAAAGTATAAGGATTA
*
115241163 AATTTCAATTGTTGTAAAGTATAATGATT
1 AATTTCAATTGTTGTAAAGTATAAGGATT
115241192 GATAACATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.38
29 6 0.25
30 9 0.38
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (30 bp):
AATTTCAATTGTTGTAAAGTATAAGGATTA
Found at i:115242226 original size:22 final size:22
Alignment explanation
Indices: 115242201--115242245 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
115242191 TTAAAAGGTT
* *
115242201 TAAAAAAGTTGCCAAAATTATA
1 TAAAAAAGTTACCAAAATAATA
*
115242223 TAAAGAAGTTACCAAAATAATA
1 TAAAAAAGTTACCAAAATAATA
115242245 T
1 T
115242246 CGTGCGGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.27
Consensus pattern (22 bp):
TAAAAAAGTTACCAAAATAATA
Found at i:115248729 original size:24 final size:24
Alignment explanation
Indices: 115248695--115248762 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
115248685 TATATAACGG
*
115248695 GAAGCTTATAAGAGCCATAATCAA
1 GAAGCTCATAAGAGCCATAATCAA
* *
115248719 GAAGTTCATAAAGAACCAT-ATCAA
1 GAAGCTCAT-AAGAGCCATAATCAA
*
115248743 GAAGCTCACAAAGAGCCATA
1 GAAGCTCA-TAAGAGCCATA
115248763 TAATGGGAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 27 0.77
25 8 0.23
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.18
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCAA
Found at i:115248763 original size:24 final size:24
Alignment explanation
Indices: 115248704--115248763 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
115248694 GGAAGCTTAT
* *
115248704 AAGAGCCATAATCAAGAAGTTCATA
1 AAGAGCCAT-ATCAAGAAGCTCACA
*
115248729 AAGAACCATATCAAGAAGCTCACA
1 AAGAGCCATATCAAGAAGCTCACA
115248753 AAGAGCCATAT
1 AAGAGCCATAT
115248764 AATGGGAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 23 0.74
25 8 0.26
ACGTcount: A:0.48, C:0.20, G:0.15, T:0.17
Consensus pattern (24 bp):
AAGAGCCATATCAAGAAGCTCACA
Found at i:115268418 original size:49 final size:49
Alignment explanation
Indices: 115268326--115268469 Score: 202
Period size: 49 Copynumber: 3.0 Consensus size: 49
115268316 TTCGTTTTCT
* * * *
115268326 CGATGCCATAGTCCAACTATGGT-TTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACATAC
*
115268374 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACATAC
* *
115268423 CGATGCCATAGCCCAGCTAT-GTCTTATACGGAATCGCATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCACAT
115268470 GTTCACATGT
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
48 38 0.44
49 48 0.56
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACATAC
Found at i:115274503 original size:22 final size:22
Alignment explanation
Indices: 115274454--115274500 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
115274444 TATAATCTAA
*
115274454 ATTAAAAACAAAAAATATATTT
1 ATTAAAAACAAAAAATATATAT
*
115274476 GATTAAAAA-TAAAAATATATAT
1 -ATTAAAAACAAAAAATATATAT
115274498 ATT
1 ATT
115274501 TAATATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 11 0.50
23 8 0.36
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
ATTAAAAACAAAAAATATATAT
Found at i:115277828 original size:11 final size:11
Alignment explanation
Indices: 115277812--115277836 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
115277802 GGCGTGGAAA
115277812 ATTTCTCTGGC
1 ATTTCTCTGGC
115277823 ATTTCTCTGGC
1 ATTTCTCTGGC
115277834 ATT
1 ATT
115277837 CATAAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.12, C:0.24, G:0.16, T:0.48
Consensus pattern (11 bp):
ATTTCTCTGGC
Found at i:115287167 original size:20 final size:20
Alignment explanation
Indices: 115287142--115287181 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
115287132 TAAGTGCCTA
* *
115287142 AAATGAATTTTTATATAATT
1 AAATGAATATCTATATAATT
*
115287162 AAATGACTATCTATATAATT
1 AAATGAATATCTATATAATT
115287182 TACCCATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATGAATATCTATATAATT
Found at i:115295968 original size:44 final size:44
Alignment explanation
Indices: 115295750--115296715 Score: 763
Period size: 44 Copynumber: 22.3 Consensus size: 44
115295740 GGGAGGTAAA
* * * * * *
115295750 ATCTGCCATCTTCGATCTTCTTCGCTGCCAAATACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTCAC-ACC-AATATAGGAAGACAAG
* * * *
115295796 ATCTG-TAATCTTCGATCTACTTCACGCCAAATACATGAAGATAAG
1 ATCTGCT-ATCTTCGATCTACTTCACACC-AATATAGGAAGACAAG
* * * *
115295841 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAG
* * * **
115295886 ATCTGC-ATCGTCAATCCACTTC-CTACCAATATAGGAAGACCGG
1 ATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAG
* * * * *
115295929 ATCTGCTACCTTTGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* * * *
115295973 ATCTGCT-TTTTCGATCCACTTC-CTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAG
* * * *
115296016 ATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* * *
115296060 ATCTGCT-TTTTCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAG
* * *
115296104 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAG
* * * *
115296147 ATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* * *
115296191 ATCTGCTTTCTTCGATCTGCTT--CGCCACA-AT---AAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCA-ATATAGGAAGACAAG
* *
115296230 ATCTGCTTTCTT-GA-C--C-T---ACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* * *
115296266 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAG
* * * *
115296309 ATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* * *
115296353 ATCTGCT-TCTTCGATCTGCTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAG
* * *
115296397 ATCTGC--T-TTCGACCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAG
* * * *
115296439 ATCTGC-ATCTTCGATCCACTTC-CTACTAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAG
* * * **
115296482 ATCTGATATCTTCGATCTACTTCACGCCAATACATTAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* * * *
115296526 ATCTGCTTTCTTCGATCTGCTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAG
* * * * * *
115296571 ATCTGCTTTCTTTGACCTACTTCGCCACCAATATGGGAATACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAG
* * *
115296616 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAG
* * * *
115296659 ATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
* *
115296703 ATCTACTTTCTTC
1 ATCTGCTATCTTC
115296716 TTCAATCTAT
Statistics
Matches: 742, Mismatches: 139, Indels: 80
0.77 0.14 0.08
Matches are distributed among these distances:
32 1 0.00
33 5 0.01
34 1 0.00
35 5 0.01
36 16 0.02
37 2 0.00
38 2 0.00
39 21 0.03
40 1 0.00
42 50 0.07
43 165 0.22
44 326 0.44
45 122 0.16
46 25 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAG
Found at i:115295993 original size:87 final size:87
Alignment explanation
Indices: 115295877--115296637 Score: 372
Period size: 87 Copynumber: 8.9 Consensus size: 87
115295867 ACCAGTATGG
* ** * * *
115295877 GAAGACAAGATCTGCATCGTCAATCCACTTCCTACCAATATAGGAAGACCGGATCTGCTACCTTT
1 GAAGACAAGATCTGCTTTTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTACCTTC
115295942 GATCTACTTCACGCCAATACAT
66 GATCTACTTCACGCCAATACAT
* * *
115295964 GAAGACAAGATCTGCTTTTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTC
1 GAAGACAAGATCTGCTTTTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTACCTTC
115296029 GATCTACTTCACGCCAATACAT
66 GATCTACTTCACGCCAATACAT
* * * * *
115296051 GAAGACAAGATCTGCTTTTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTT
1 GAAGACAAGATCTGCTTTTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTACCTT
* * * *
115296115 CGATCCACTTC-CTACCAATATAG
65 CGATCTACTTCAC-GCCAATACAT
* * * * * * * * * **
115296138 GAAGATAGGATCTGATATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCT
1 GAAGACAAGATCTGCT-TTTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTACCT
* *
115296202 TCGATCTGCTT--CGCC-ACA-AT
64 TCGATCTACTTCACGCCAATACAT
* * *
115296222 -AAGACAAGATCTGCTTTCTT-G----A---CCTACCAATATGGGAAGACAAGATCTGC-ATCTT
1 GAAGACAAGATCTGCTTT-TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTACCTT
* * * *
115296277 CGATCCACTTC-CTACCAATATAG
65 CGATCTACTTCAC-GCCAATACAT
* * * * * * * * * *
115296300 GAAGATAGGATCTGATATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCT-TCT
1 GAAGACAAGATCTGCT-TTTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTACCT
* * * ***
115296363 TCGATCTGCTTCGCCACCAATATGG
64 TCGATCTACTTC-ACGCCAATACAT
* * * *
115296388 GAAGACAAGATCTGC--TTTCGA-CCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCT
1 GAAGACAAGATCTGCTTTTTCGATCC-ACTTC-CTACCAATATAGGAAGACAGGATCTGCTACCT
* * * * *
115296449 TCGATCCACTTC-CTACTAATATAG
64 TCGATCTACTTCAC-GCCAATACAT
* * * * * * * ** * **
115296473 GAAGATAGGATCTGATATCTTCGATCTACTTCAC-GCCAATACATTAAGACAAGATCTGCTTTCT
1 GAAGACAAGATCTGCT-TTTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTACCT
* * * ***
115296537 TCGATCTGCTTCGCCACCAATATGG
64 TCGATCTACTTC-ACGCCAATACAT
* * * * * *
115296562 GAAGACAAGATCTGCTTTCTTTGA-CCTACTTCGCCACCAATATGGGAATACAAGATCTGC-ATC
1 GAAGACAAGATCTGCTTT-TTCGATCC-ACTTC-CTACCAATATAGGAAGACAGGATCTGCTACC
*
115296625 TTCGATCCACTTC
63 TTCGATCTACTTC
115296638 CTACCAATAT
Statistics
Matches: 531, Mismatches: 105, Indels: 74
0.75 0.15 0.10
Matches are distributed among these distances:
74 13 0.02
75 23 0.04
76 2 0.00
77 2 0.00
78 2 0.00
79 14 0.03
80 2 0.00
82 2 0.00
83 14 0.03
84 4 0.01
85 33 0.06
86 37 0.07
87 220 0.41
88 97 0.18
89 46 0.09
90 20 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (87 bp):
GAAGACAAGATCTGCTTTTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTACCTTC
GATCTACTTCACGCCAATACAT
Found at i:115296650 original size:350 final size:346
Alignment explanation
Indices: 115295750--115296715 Score: 1246
Period size: 350 Copynumber: 2.8 Consensus size: 346
115295740 GGGAGGTAAA
** * * ** *
115295750 ATCTGCCATCTTCGATCTTCTTCGCTGCCAAATACAGGAAGGCAAGATCTG-TAATCTTCGATCT
1 ATCTG-CATCTTCGATCCACTTC-CTACC-AATATAGGAAGATAGGATCTGAT-ATCTTCGATCT
* * *
115295814 ACTTCACGCCAAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGA
62 ACTTCACGCC-AATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAATATGGGA
* ** * ** * *
115295879 AGACAAGATCTGC-ATCGTCAATCCACTTCCTACCAATATAGGAAGACCGGATCTGCTACCTTTG
126 AGACAAGATCTGCTTTC-TTGA-CCACTTCC-ACCAATATGGGAAGACAAGATCTGC-ATCTTCG
* * * * * * * * * * *
115295943 ATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCT-TTTTCGATCCACTTC-CTACCAATAT
187 ATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCAC-GCCAATAC
* * * * * *
115296005 AGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTT
250 ATGAAGACAAGATCTGCT-TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGC-TTT
*
115296070 TCGATCTACTTCGCCACCAATATGGGAAGACAAG
313 TCGACCTACTTCGCCACCAATATGGGAAGACAAG
115296104 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTT
1 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTT
115296169 CACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCA-C-A-AT---AAGACA
66 CACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAATATGGGAAGACA
115296228 AGATCTGCTTTCTTGA-C-C-T--ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
131 AGATCTGCTTTCTTGACCACTTCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
115296288 CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
196 CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* * **
115296353 ATCTGCTTCTTCGATCTGCTTCGCCACCAATATGGGAAGACAAGATCTGC-TTTCGACCTACTTC
261 ATCTGCTTCTTCGATCTACTTC-ACACCAATACAGGAAGACAAGATCTGCTTTTCGACCTACTTC
115296417 GCCACCAATATGGGAAGACAAG
325 GCCACCAATATGGGAAGACAAG
*
115296439 ATCTGCATCTTCGATCCACTTCCTACTAATATAGGAAGATAGGATCTGATATCTTCGATCTACTT
1 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTT
*
115296504 CACGCCAATACATTAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAATATGGGAAGACA
66 CACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAATATGGGAAGACA
*
115296569 AGATCTGCTTTCTTTGACCTACTTCGCCACCAATATGGGAATACAAGATCTGCATCTTCGATCCA
131 AGATCTGCTTTC-TTGACC-ACTT--CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA
115296634 CTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGA
192 CTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGA
*
115296699 CAAGATCTACTTTCTTC
257 CAAGATCTGC-TTCTTC
115296716 TTCAATCTAT
Statistics
Matches: 546, Mismatches: 44, Indels: 47
0.86 0.07 0.07
Matches are distributed among these distances:
335 148 0.27
336 48 0.09
337 78 0.14
338 3 0.01
340 1 0.00
341 19 0.03
342 5 0.01
343 1 0.00
344 16 0.03
345 3 0.01
346 1 0.00
347 2 0.00
349 1 0.00
350 151 0.28
351 44 0.08
352 5 0.01
353 15 0.03
354 5 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (346 bp):
ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTT
CACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAATATGGGAAGACA
AGATCTGCTTTCTTGACCACTTCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
ATCTGCTTCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTTTTCGACCTACTTCG
CCACCAATATGGGAAGACAAG
Found at i:115315018 original size:23 final size:22
Alignment explanation
Indices: 115314992--115315036 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
115314982 ATATATATAT
*
115314992 TAAAAGATGTAATATTTTTAATA
1 TAAAA-ATGCAATATTTTTAATA
* *
115315015 TAAAAATGCATTGTTTTTAATA
1 TAAAAATGCAATATTTTTAATA
115315037 AGTGAAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.44
Consensus pattern (22 bp):
TAAAAATGCAATATTTTTAATA
Found at i:115340672 original size:34 final size:35
Alignment explanation
Indices: 115340615--115340681 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
115340605 CAAACACCAG
* *
115340615 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
115340650 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
115340682 CATTTTACAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:115346300 original size:21 final size:23
Alignment explanation
Indices: 115346241--115346306 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
115346231 GCTTTACTGA
115346241 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
115346264 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
115346286 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
115346307 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:115348401 original size:5 final size:5
Alignment explanation
Indices: 115348391--115348439 Score: 73
Period size: 5 Copynumber: 9.6 Consensus size: 5
115348381 CATAATTCAT
115348391 AATTC AATTC AATTC AATTC AATTC AATT- ACATTC AATTC AATATC AAT
1 AATTC AATTC AATTC AATTC AATTC AATTC A-ATTC AATTC AAT-TC AAT
115348440 ACTCACCTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
4 1 0.02
5 34 0.83
6 6 0.15
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (5 bp):
AATTC
Found at i:115355596 original size:11 final size:11
Alignment explanation
Indices: 115355580--115355606 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
115355570 TAGAAATTAG
115355580 TTTGTGAAACT
1 TTTGTGAAACT
115355591 TTTGTGAAACT
1 TTTGTGAAACT
115355602 TTTGT
1 TTTGT
115355607 ATTTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:115357143 original size:92 final size:92
Alignment explanation
Indices: 115357006--115357195 Score: 269
Period size: 92 Copynumber: 2.1 Consensus size: 92
115356996 TTGATTTTAG
* * *
115357006 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGGAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
115357070 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
115357097 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
115357162 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
115357190 CAAATT
1 TAAATT
115357196 GATAAACTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
91 17 0.19
92 42 0.48
93 26 0.30
94 3 0.03
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:115357257 original size:17 final size:17
Alignment explanation
Indices: 115357232--115357265 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
115357222 ATAATTTTAA
*
115357232 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
115357249 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
115357266 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:115357282 original size:17 final size:16
Alignment explanation
Indices: 115357237--115357284 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
115357227 TTTAAATTTT
115357237 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
115357254 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
115357268 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
115357285 TAATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:115357372 original size:16 final size:17
Alignment explanation
Indices: 115357334--115357373 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
115357324 AATTTTATTA
115357334 AATAA-TATATTTTAAT
1 AATAATTATATTTTAAT
*
115357350 TAT-ATTATA-TTTAAT
1 AATAATTATATTTTAAT
115357365 AATAATTAT
1 AATAATTAT
115357374 GTTATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAATTATATTTTAAT
Found at i:115357478 original size:18 final size:17
Alignment explanation
Indices: 115357450--115357484 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
115357440 ATTATTAAGA
*
115357450 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
115357467 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
115357485 TTATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:115357484 original size:16 final size:17
Alignment explanation
Indices: 115357450--115357491 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
115357440 ATTATTAAGA
115357450 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
115357467 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
115357483 ATTTATAAT
1 ATTT-TAAT
115357492 AATTATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 9 0.39
18 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:115357593 original size:143 final size:147
Alignment explanation
Indices: 115357438--115357708 Score: 478
Period size: 143 Copynumber: 1.9 Consensus size: 147
115357428 ATAAGAATAT
*
115357438 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT-TATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
115357502 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
115357564 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
115357581 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
115357646 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
115357709 CAATAATCAT
Statistics
Matches: 120, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
143 48 0.40
144 42 0.35
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:115357621 original size:18 final size:17
Alignment explanation
Indices: 115357593--115357627 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
115357583 ATTATTAAGA
*
115357593 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
115357610 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
115357628 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:115357838 original size:44 final size:45
Alignment explanation
Indices: 115357789--115357883 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
115357779 TTACACCTCT
* *
115357789 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
115357833 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
115357878 ATTACA
1 ATTACA
115357884 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:115357883 original size:16 final size:16
Alignment explanation
Indices: 115357862--115357894 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
115357852 TTGATTTGCT
*
115357862 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
115357878 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
115357894 A
1 A
115357895 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:115357904 original size:21 final size:21
Alignment explanation
Indices: 115357875--115357917 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
115357865 ACACCTCTAT
*
115357875 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
115357896 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
115357917 T
1 T
115357918 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:115359442 original size:15 final size:14
Alignment explanation
Indices: 115359420--115359543 Score: 78
Period size: 15 Copynumber: 8.6 Consensus size: 14
115359410 TATTCTAATA
115359420 CTATTATTATTTAT
1 CTATTATTATTTAT
115359434 CTAATTATTATTTAT
1 CT-ATTATTATTTAT
* *
115359449 CTATTTTTATTTCT
1 CTATTATTATTTAT
115359463 ACTATTATTATATT-T
1 -CTATTATTAT-TTAT
115359478 CTATTTATTATATT-T
1 CTA-TTATTAT-TTAT
*
115359493 TTATT-TCTATTTATAT
1 CTATTAT-TA-TT-TAT
*
115359509 ACTAATATTATTT-T
1 -CTATTATTATTTAT
*
115359523 C-ATTATTATTTTT
1 CTATTATTATTTAT
*
115359536 CTAATATT
1 CTATTATT
115359544 TGTTTTTCAC
Statistics
Matches: 90, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
12 9 0.10
13 4 0.04
14 26 0.29
15 40 0.44
16 5 0.06
17 5 0.06
18 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (14 bp):
CTATTATTATTTAT
Found at i:115359466 original size:44 final size:44
Alignment explanation
Indices: 115359417--115359534 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 44
115359407 TGTTATTCTA
*
115359417 ATACTATTATTATTTATCTAATTATTATTTATCTATTTTTA-TT-T
1 ATACTATTATTATTT-TCTAATTATTATTT-TCTATTTCTATTTAT
* * *
115359461 CTACTATTATTATATTTCTATTTATTATATTTTTATTTCTATTTAT
1 ATACTATTATTAT-TTTCTAATTATTAT-TTTCTATTTCTATTTAT
*
115359507 ATACTAATATTATTTTC--ATTATTATTTT
1 ATACTATTATTATTTTCTAATTATTATTTT
115359535 TCTAATATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 3 0.05
43 7 0.11
44 31 0.49
45 10 0.16
46 12 0.19
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.64
Consensus pattern (44 bp):
ATACTATTATTATTTTCTAATTATTATTTTCTATTTCTATTTAT
Found at i:115359497 original size:29 final size:30
Alignment explanation
Indices: 115359383--115359488 Score: 94
Period size: 29 Copynumber: 3.6 Consensus size: 30
115359373 GCTGTTATGT
* *
115359383 TTATATTTCTATTTA-TATTTATTTTGTTA
1 TTATATTTCTATTTATTATTTATATTATTA
* * * * *
115359412 TTCTAATACTA-TTATTATTTATCTAATTA
1 TTATATTTCTATTTATTATTTATATTATTA
* *
115359441 TTAT-TTATCTATTT-TTATTTCTACTATTA
1 TTATATT-TCTATTTATTATTTATATTATTA
115359470 TTATATTTCTATTTATTAT
1 TTATATTTCTATTTATTAT
115359489 ATTTTTATTT
Statistics
Matches: 59, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
28 4 0.07
29 47 0.80
30 8 0.14
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (30 bp):
TTATATTTCTATTTATTATTTATATTATTA
Found at i:115359499 original size:21 final size:19
Alignment explanation
Indices: 115359442--115359506 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 19
115359432 ATCTAATTAT
115359442 TATTTATCTATTTTTATTTC
1 TATTTAT-TATTTTTATTTC
* *
115359462 TA-CTATTA-TTATATTTC
1 TATTTATTATTTTTATTTC
115359479 TATTTATTATATTTTTATTTC
1 TATTTA-T-TATTTTTATTTC
115359500 TATTTAT
1 TATTTAT
115359507 ATACTAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 10 0.27
18 4 0.11
19 4 0.11
20 5 0.14
21 14 0.38
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.68
Consensus pattern (19 bp):
TATTTATTATTTTTATTTC
Found at i:115359521 original size:38 final size:39
Alignment explanation
Indices: 115359424--115359535 Score: 99
Period size: 38 Copynumber: 2.8 Consensus size: 39
115359414 CTAATACTAT
*
115359424 TATTATTTATCTAATTATTATTTA-TCTATTTTTATTTCTAC
1 TATTA-TTA-CTAA-TATTATTTATTATATTTTTATTTCTAC
*
115359465 TATTATTA-T-ATTTCTATTTATTATATTTTTATTTCTA-
1 TATTATTACTAATAT-TATTTATTATATTTTTATTTCTAC
115359502 T-TTATATACTAATATTATTTTCATTATTATTTTT
1 TATTAT-TACTAATATTA-TTT-ATTA-TATTTTT
115359536 CTAATATTTG
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
36 6 0.10
37 10 0.17
38 19 0.32
39 6 0.10
40 7 0.12
41 12 0.20
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (39 bp):
TATTATTACTAATATTATTTATTATATTTTTATTTCTAC
Found at i:115361543 original size:19 final size:20
Alignment explanation
Indices: 115361519--115361556 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
115361509 TAATTAGATT
115361519 TTAATTAA-GTAAATTTAGC
1 TTAATTAAGGTAAATTTAGC
*
115361538 TTAATTAAGGTTAATTTAG
1 TTAATTAAGGTAAATTTAG
115361557 TGTAATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
TTAATTAAGGTAAATTTAGC
Found at i:115361762 original size:8 final size:8
Alignment explanation
Indices: 115361727--115361774 Score: 55
Period size: 8 Copynumber: 6.0 Consensus size: 8
115361717 TTACTTATAT
115361727 TATAAGTAA
1 TATAA-TAA
115361736 -ATAATAA
1 TATAATAA
*
115361743 T-TACTAAA
1 TATAAT-AA
115361751 TATAATAA
1 TATAATAA
115361759 TATAATAA
1 TATAATAA
115361767 TATAATAA
1 TATAATAA
115361775 AAGAATAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
7 6 0.18
8 25 0.74
9 3 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (8 bp):
TATAATAA
Found at i:115361781 original size:16 final size:16
Alignment explanation
Indices: 115361749--115361782 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
115361739 ATAATTACTA
* *
115361749 AATATAATAATATAAT
1 AATATAATAAAAGAAT
115361765 AATATAATAAAAGAAT
1 AATATAATAAAAGAAT
115361781 AA
1 AA
115361783 AGAAATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AATATAATAAAAGAAT
Found at i:115362717 original size:12 final size:12
Alignment explanation
Indices: 115362686--115362720 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
115362676 TGACTATGAC
*
115362686 TGTTACTATTAT
1 TGTTACTGTTAT
115362698 TGTTACTGTTAT
1 TGTTACTGTTAT
115362710 TGTTACTGTTA
1 TGTTACTGTTA
115362721 CCCTACGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.57
Consensus pattern (12 bp):
TGTTACTGTTAT
Found at i:115365861 original size:39 final size:39
Alignment explanation
Indices: 115365799--115365977 Score: 270
Period size: 39 Copynumber: 4.6 Consensus size: 39
115365789 ATCGTGATCT
** * *
115365799 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCCAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
115365838 GAAGCCCGAAGGCTAACTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
115365877 GAAGCCC-AGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGA-AGGCTAACTGAAGCACATAAGTGCTAAACG
* *
115365916 GAAGCCCGAAGGCTAGCTGAAGCATATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
115365955 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
115365978 TCATCAGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 126 0.98
40 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:115369459 original size:9 final size:9
Alignment explanation
Indices: 115369441--115369498 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
115369431 TAAATATAAG
115369441 ATTAACCGA
1 ATTAACCGA
*
115369450 ATTAATCGA
1 ATTAACCGA
115369459 ATTAACCGA
1 ATTAACCGA
*
115369468 ATTACCCGA
1 ATTAACCGA
*
115369477 ATTAACCAA
1 ATTAACCGA
115369486 ATTAACCGA
1 ATTAACCGA
115369495 ATTA
1 ATTA
115369499 TTTGTATAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (9 bp):
ATTAACCGA
Found at i:115375933 original size:15 final size:16
Alignment explanation
Indices: 115375913--115375949 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
115375903 AAATGAGTGG
115375913 TTAATTAGAATTTAA-
1 TTAATTAGAATTTAAT
115375928 TTAATT-GAATTTAAT
1 TTAATTAGAATTTAAT
115375943 TTAATTA
1 TTAATTA
115375950 AGAGTGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (16 bp):
TTAATTAGAATTTAAT
Found at i:115376498 original size:13 final size:13
Alignment explanation
Indices: 115376480--115376507 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
115376470 AGAATAGGGG
115376480 AGAAAGAAAGAAA
1 AGAAAGAAAGAAA
115376493 AGAAAGAAAGAAA
1 AGAAAGAAAGAAA
115376506 AG
1 AG
115376508 GAAAATTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAGAAA
Found at i:115390175 original size:13 final size:13
Alignment explanation
Indices: 115390157--115390181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115390147 TTTAAATTAA
115390157 ATTAATTTATTCG
1 ATTAATTTATTCG
115390170 ATTAATTTATTC
1 ATTAATTTATTC
115390182 AACCGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTAATTTATTCG
Found at i:115399808 original size:12 final size:12
Alignment explanation
Indices: 115399793--115399817 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
115399783 GCCGTAAATA
115399793 TTTATAAATATT
1 TTTATAAATATT
115399805 TTTATAAATATT
1 TTTATAAATATT
115399817 T
1 T
115399818 ACGGAGTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATAAATATT
Found at i:115402742 original size:130 final size:130
Alignment explanation
Indices: 115402505--115402832 Score: 486
Period size: 130 Copynumber: 2.5 Consensus size: 130
115402495 AAAAAATCGA
* * * * *
115402505 AACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATCGAACATTGCCTT-ATTTT-AG
1 AACCCAGCACGA-TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAG
* * *
115402567 AA-TTTAGAGAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGGGAAATTG
65 AATTTTAAAGAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
115402631 C
130 C
*
115402632 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTT-AAG
115402697 AATTTTAAAG-ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
65 AATTTTAAAGAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
115402761 C
130 C
* * *
115402762 AATCCAACACGATAGGGCACGATTCCCCGAATTGCCAAACATAGAACATTGCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTT-AAG
115402827 AATTTT
65 AATTTT
115402833 TGAATGAATA
Statistics
Matches: 182, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
127 48 0.26
128 5 0.03
130 123 0.68
131 6 0.03
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (130 bp):
AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAGA
ATTTTAAAGAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGC
Found at i:115410350 original size:18 final size:19
Alignment explanation
Indices: 115410324--115410364 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
115410314 TATATAAAAA
115410324 TAATAA-TTTGTAGAAAATT
1 TAATAATTTTGTA-AAAATT
*
115410343 TAAT-ATTTTTTAAAAATT
1 TAATAATTTTGTAAAAATT
115410361 TAAT
1 TAAT
115410365 TTAACTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TAATAATTTTGTAAAAATT
Found at i:115410952 original size:69 final size:69
Alignment explanation
Indices: 115410841--115410972 Score: 246
Period size: 69 Copynumber: 1.9 Consensus size: 69
115410831 TATTCTCAAA
* *
115410841 CCTTCAATTTCTTAGAAAGTGAGGATCTAATTTCTGAACCAAACGCATAATGAAAACTTTAACAC
1 CCTTCAATTTCTTAGAAAGTGAGGATCTAATTTCTAAACCAAACACATAATGAAAACTTTAACAC
115410906 TGAT
66 TGAT
115410910 CCTTCAATTTCTTAGAAAGTGAGGATCTAATTTCTAAACCAAACACATAATGAAAACTTTAAC
1 CCTTCAATTTCTTAGAAAGTGAGGATCTAATTTCTAAACCAAACACATAATGAAAACTTTAAC
115410973 CTTTCAGTAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (69 bp):
CCTTCAATTTCTTAGAAAGTGAGGATCTAATTTCTAAACCAAACACATAATGAAAACTTTAACAC
TGAT
Found at i:115412095 original size:14 final size:15
Alignment explanation
Indices: 115412073--115412149 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
115412063 CAATCAAACA
115412073 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
115412087 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
115412102 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
115412122 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
115412136 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
115412150 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:115412114 original size:20 final size:20
Alignment explanation
Indices: 115412089--115412128 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
115412079 AATATTTTCC
*
115412089 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
115412109 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
115412129 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:115412134 original size:34 final size:35
Alignment explanation
Indices: 115412077--115412143 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
115412067 CAAACACCAG
*
115412077 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
115412112 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
115412144 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:115414989 original size:16 final size:15
Alignment explanation
Indices: 115414964--115415002 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
115414954 TCCATAATTG
115414964 ATTTTTTTTAGATAA-
1 ATTTTTTTTA-ATAAT
115414979 ATTTTTATTTAATAAT
1 ATTTTT-TTTAATAAT
115414995 ATTTTTTT
1 ATTTTTTT
115415003 AAAAATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
ATTTTTTTTAATAAT
Found at i:115416752 original size:30 final size:29
Alignment explanation
Indices: 115416705--115416766 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
115416695 ACTTATTTTA
115416705 TTGTTAATTTTTTATTATTTTAAAGACAT
1 TTGTTAATTTTTTATTATTTTAAAGACAT
*
115416734 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTT-TTATTATTTTAAAGACAT
115416764 TTG
1 TTG
115416767 CTTGCTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 11 0.35
30 20 0.65
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (29 bp):
TTGTTAATTTTTTATTATTTTAAAGACAT
Found at i:115422497 original size:29 final size:30
Alignment explanation
Indices: 115422432--115422501 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
115422422 TTTAGAAATT
* * *
115422432 TATTTAAAATATGTAATATTATATATTCGTA
1 TATTT-AAATATCTAAAATAATATATTCGTA
*
115422463 TAATTTAAATATCTAAAATAATATTTTCG-A
1 T-ATTTAAATATCTAAAATAATATATTCGTA
115422493 TATTTAAAT
1 TATTTAAAT
115422502 TAAATGTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 8 0.24
30 2 0.06
31 20 0.59
32 4 0.12
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (30 bp):
TATTTAAATATCTAAAATAATATATTCGTA
Found at i:115422828 original size:21 final size:20
Alignment explanation
Indices: 115422789--115422827 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
115422779 ATGAATTAAA
115422789 AAAAATCAAAAATAATTTTC
1 AAAAATCAAAAATAATTTTC
115422809 AAAAAT-ACAAAATAATTTT
1 AAAAATCA-AAAATAATTTT
115422828 TAAAGTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAATCAAAAATAATTTTC
Found at i:115426801 original size:19 final size:19
Alignment explanation
Indices: 115426770--115426807 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
115426760 TAAGTATCAG
115426770 AAATAATTGTGATGAAAAC
1 AAATAATTGTGATGAAAAC
*
115426789 AAAT-ATTGCTGATTAAAAC
1 AAATAATTG-TGATGAAAAC
115426808 TATTGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (19 bp):
AAATAATTGTGATGAAAAC
Found at i:115460437 original size:20 final size:21
Alignment explanation
Indices: 115460414--115460457 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
115460404 TTCTTTCGGA
*
115460414 TTTCCCCTTTTT-TATTTATT
1 TTTCCCCTTTTTAAATTTATT
**
115460434 TTTCTGCTTTTTAAATTTATT
1 TTTCCCCTTTTTAAATTTATT
115460455 TTT
1 TTT
115460458 TGACAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTCCCCTTTTTAAATTTATT
Found at i:115461574 original size:3 final size:3
Alignment explanation
Indices: 115461566--115461598 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
115461556 CTTTTTCATA
115461566 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
115461599 AAATTTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:115465992 original size:19 final size:18
Alignment explanation
Indices: 115465949--115465994 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 18
115465939 ACACAAGTGC
115465949 AATAATTAAATATTATTA
1 AATAATTAAATATTATTA
115465967 AATTAATTAAATATTATTA
1 AA-TAATTAAATATTATTA
115465986 AGATAATTA
1 A-ATAATTA
115465995 TTAAATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.08
19 23 0.88
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
AATAATTAAATATTATTA
Found at i:115465994 original size:12 final size:11
Alignment explanation
Indices: 115465953--115466000 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 11
115465943 AAGTGCAATA
115465953 ATTAAAT-ATT
1 ATTAAATAATT
*
115465963 ATTAAAT--TA
1 ATTAAATAATT
115465972 ATTAAAT-ATT
1 ATTAAATAATT
115465982 ATTAAGATAATT
1 ATTAA-ATAATT
115465994 ATTAAAT
1 ATTAAAT
115466001 TAAATTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 8 0.24
10 13 0.39
11 4 0.12
12 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (11 bp):
ATTAAATAATT
Found at i:115466380 original size:13 final size:13
Alignment explanation
Indices: 115466359--115466402 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
115466349 TCAAAACAAA
*
115466359 TAATATTAATAAT
1 TAATTTTAATAAT
115466372 TAATTTTAATTAAAT
1 TAATTTTAA-T-AAT
*
115466387 TAATTTTAAAAAT
1 TAATTTTAATAAT
115466400 TAA
1 TAA
115466403 ATTAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 14 0.52
14 1 0.04
15 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTTTAATAAT
Found at i:115466402 original size:18 final size:19
Alignment explanation
Indices: 115466379--115466422 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
115466369 AATTAATTTT
*
115466379 AATTAAATT-AATTTTAAA
1 AATTAAATTAAATATTAAA
115466397 AATTAAATTAAATATTAAA
1 AATTAAATTAAATATTAAA
115466416 ATATTAA
1 A-ATTAA
115466423 CACTTTCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.39
19 9 0.39
20 5 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTAAATTAAATATTAAA
Found at i:115466721 original size:73 final size:73
Alignment explanation
Indices: 115466640--115466784 Score: 195
Period size: 73 Copynumber: 2.0 Consensus size: 73
115466630 TACTTACTTG
* *
115466640 GTACTTAAAATTTTTTTGGATCTAACTGGTACATAAACTTAAAAACCGTAAA-CTAAAGTGGTAC
1 GTACTTAAAATTTTTTTGGACCTAACTGGTACATAAACTTAAAAACC-TAAATC-AAAGTGATAC
115466704 TTT-TTTTAA
64 TTTCTTTTAA
* * * * *
115466713 GTACTTAAAATTTTTTTGGACCTAATTGGTACTTGAACTTGAAAGCCTAAATCAAAGTGATACTT
1 GTACTTAAAATTTTTTTGGACCTAACTGGTACATAAACTTAAAAACCTAAATCAAAGTGATACTT
115466778 TCTTTTA
66 TCTTTTA
115466785 GATCCAGTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
72 16 0.25
73 47 0.75
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (73 bp):
GTACTTAAAATTTTTTTGGACCTAACTGGTACATAAACTTAAAAACCTAAATCAAAGTGATACTT
TCTTTTAA
Found at i:115468681 original size:32 final size:31
Alignment explanation
Indices: 115468622--115468700 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
115468612 TTTCTAATTT
115468622 ATCAACAAATTGTCTTTGAAAAGAAAAAAAAA
1 ATCAACAAATTGTCTTTGAAAAG-AAAAAAAA
*** *
115468654 ATCAACAAATTCGT-TTTGAACCTAAAAAATA
1 ATCAACAAATT-GTCTTTGAAAAGAAAAAAAA
* *
115468685 TTCAACAAATTTTCTT
1 ATCAACAAATTGTCTT
115468701 ATAAAAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 1 0.03
31 19 0.49
32 17 0.44
33 2 0.05
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.30
Consensus pattern (31 bp):
ATCAACAAATTGTCTTTGAAAAGAAAAAAAA
Found at i:115470124 original size:3 final size:3
Alignment explanation
Indices: 115470116--115470141 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
115470106 TGAAAGAAAT
115470116 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
115470142 CTGGAGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:115484301 original size:21 final size:21
Alignment explanation
Indices: 115484277--115484319 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
115484267 GAAAAAAAAT
*
115484277 AGTTAATAAAATTAAAGGAAA
1 AGTTAATAAAATTAAACGAAA
**
115484298 AGTTAATCTAATTAAACGAAA
1 AGTTAATAAAATTAAACGAAA
115484319 A
1 A
115484320 AAATTATTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.26
Consensus pattern (21 bp):
AGTTAATAAAATTAAACGAAA
Found at i:115484681 original size:36 final size:35
Alignment explanation
Indices: 115484637--115484760 Score: 116
Period size: 36 Copynumber: 3.5 Consensus size: 35
115484627 AATATAGTAG
*
115484637 CAAAATTAACAATAAAATAAGAATTATACAATATC
1 CAAAATTAATAATAAAATAAGAATTATACAATATC
115484672 CAAACATTAATAATAAAATAGTAGCAA-TAT--AATAGT-
1 CAAA-ATTAATAATAAAATA--AG-AATTATACAATA-TC
* **
115484708 -AAAA-TGATAGCAAAATAAGAATTATACAATATC
1 CAAAATTAATAATAAAATAAGAATTATACAATATC
115484741 CAAACATTAATAATAAAATA
1 CAAA-ATTAATAATAAAATA
115484761 GTAGCAATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 23
0.70 0.07 0.23
Matches are distributed among these distances:
30 2 0.03
31 5 0.07
32 1 0.01
33 14 0.20
34 4 0.06
35 8 0.11
36 28 0.40
37 1 0.01
38 5 0.07
39 2 0.03
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.26
Consensus pattern (35 bp):
CAAAATTAATAATAAAATAAGAATTATACAATATC
Found at i:115484704 original size:22 final size:22
Alignment explanation
Indices: 115484679--115484796 Score: 91
Period size: 22 Copynumber: 5.2 Consensus size: 22
115484669 ATCCAAACAT
*
115484679 TAATAATAAAATAGTAGCAATA
1 TAATAATAAAATAGTAGCAAAA
*
115484701 TAATAGTAAAAT-GATAGCAAAA
1 TAATAATAAAATAG-TAGCAAAA
* *
115484723 TAAGAATTATACAATA-T-CCAAACA
1 TAATAA-TA-A-AATAGTAGCAAA-A
*
115484747 TTAATAATAAAATAGTAGCAATA
1 -TAATAATAAAATAGTAGCAAAA
*
115484770 TAATAGTAAAAT-GATAGCAAAA
1 TAATAATAAAATAG-TAGCAAAA
115484792 TAATA
1 TAATA
115484797 GAAAAATGGC
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
21 2 0.03
22 49 0.64
23 9 0.12
24 8 0.11
25 8 0.11
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.26
Consensus pattern (22 bp):
TAATAATAAAATAGTAGCAAAA
Found at i:115484739 original size:69 final size:69
Alignment explanation
Indices: 115484650--115484794 Score: 290
Period size: 69 Copynumber: 2.1 Consensus size: 69
115484640 AATTAACAAT
115484650 AAAATAAGAATTATACAATATCCAAACATTAATAATAAAATAGTAGCAATATAATAGTAAAATGA
1 AAAATAAGAATTATACAATATCCAAACATTAATAATAAAATAGTAGCAATATAATAGTAAAATGA
115484715 TAGC
66 TAGC
115484719 AAAATAAGAATTATACAATATCCAAACATTAATAATAAAATAGTAGCAATATAATAGTAAAATGA
1 AAAATAAGAATTATACAATATCCAAACATTAATAATAAAATAGTAGCAATATAATAGTAAAATGA
115484784 TAGC
66 TAGC
115484788 AAAATAA
1 AAAATAA
115484795 TAGAAAAATG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 76 1.00
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.26
Consensus pattern (69 bp):
AAAATAAGAATTATACAATATCCAAACATTAATAATAAAATAGTAGCAATATAATAGTAAAATGA
TAGC
Found at i:115484791 original size:11 final size:11
Alignment explanation
Indices: 115484755--115484803 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
115484745 CATTAATAAT
*
115484755 AAAATAGTAGC
1 AAAATAATAGC
* *
115484766 AATATAATAGT
1 AAAATAATAGC
*
115484777 AAAATGATAGC
1 AAAATAATAGC
*
115484788 AAAATAATAGA
1 AAAATAATAGC
115484799 AAAAT
1 AAAAT
115484804 GGCAACAAAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.61, C:0.04, G:0.12, T:0.22
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:115484804 original size:22 final size:22
Alignment explanation
Indices: 115484762--115484804 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
115484752 AATAAAATAG
* *
115484762 TAGCAATATAATAGTAAAATGA
1 TAGCAAAATAATAGAAAAATGA
115484784 TAGCAAAATAATAGAAAAATG
1 TAGCAAAATAATAGAAAAATG
115484805 GCAACAAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.14, T:0.23
Consensus pattern (22 bp):
TAGCAAAATAATAGAAAAATGA
Found at i:115484812 original size:22 final size:22
Alignment explanation
Indices: 115484769--115484812 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
115484759 TAGTAGCAAT
* * *
115484769 ATAATAGTAAAATGATAGCAAA
1 ATAATAGAAAAATGACAACAAA
*
115484791 ATAATAGAAAAATGGCAACAAA
1 ATAATAGAAAAATGACAACAAA
115484813 CGGCAACAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.14, T:0.18
Consensus pattern (22 bp):
ATAATAGAAAAATGACAACAAA
Found at i:115485402 original size:103 final size:98
Alignment explanation
Indices: 115485288--115485493 Score: 367
Period size: 103 Copynumber: 2.1 Consensus size: 98
115485278 ACAGTCTAAT
115485288 TTTTTTGTCAACCAGACCAATTTTTAATAATACAAATTGATGATATTTTAAAAGAAAAGACCAAA
1 TTTTTTGTCAACCAGACCAATTTTTAATAATACAAATTGATGATA-TTT-AAAG-AAAGACC-AA
115485353 TTGCTCTTTAATATAATGTACAGGGATTAAGTTGCCTA
62 TTGCTCTTTAATATAATGTACAGGGATT-AGTTGCCTA
115485391 TTTTTTGTCAACCAGACCAATTTTTAATAATACAAATTGATGATATTTAAAGAAAGACCAATTGC
1 TTTTTTGTCAACCAGACCAATTTTTAATAATACAAATTGATGATATTTAAAGAAAGACCAATTGC
115485456 TCTTTAATATAATGTACAGGGATTAGTTGCCTA
66 TCTTTAATATAATGTACAGGGATTAGTTGCCTA
115485489 TTTTT
1 TTTTT
115485494 AAATAGAATG
Statistics
Matches: 103, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
98 14 0.14
99 30 0.29
100 7 0.07
101 4 0.04
102 3 0.03
103 45 0.44
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (98 bp):
TTTTTTGTCAACCAGACCAATTTTTAATAATACAAATTGATGATATTTAAAGAAAGACCAATTGC
TCTTTAATATAATGTACAGGGATTAGTTGCCTA
Found at i:115486467 original size:9 final size:10
Alignment explanation
Indices: 115486426--115486468 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
115486416 GTTTATTTTT
*
115486426 AAAAGAATGA
1 AAAAAAATGA
*
115486436 GAAAAAATGA
1 AAAAAAATGA
115486446 AAAAAAATGA
1 AAAAAAATGA
115486456 AAAAAAAT-A
1 AAAAAAATGA
115486465 AAAA
1 AAAA
115486469 TTATTATCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:115487584 original size:73 final size:73
Alignment explanation
Indices: 115487465--115487611 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
115487455 AGGTAATACG
115487465 TTAATGTAATTTTTGGCCACCCTTGAACCTAACAAGTAAATCTATACATGGGTCAGGCTTGAATA
1 TTAATGTAATTTTTGGCCACCCTTGAACCTAACAAGTAAATCTATACATGGGTCAGGCTTGAATA
115487530 AGTTTTTT
66 AGTTTTTT
115487538 TTAATGTAATTTTTGGCCACCCTTGAACCTAACAAGTAAATCTATACATGGGTCAGGCTTGAATA
1 TTAATGTAATTTTTGGCCACCCTTGAACCTAACAAGTAAATCTATACATGGGTCAGGCTTGAATA
115487603 AGTTTTTT
66 AGTTTTTT
115487611 T
1 T
115487612 ACACTTCAGA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (73 bp):
TTAATGTAATTTTTGGCCACCCTTGAACCTAACAAGTAAATCTATACATGGGTCAGGCTTGAATA
AGTTTTTT
Found at i:115487841 original size:14 final size:14
Alignment explanation
Indices: 115487818--115487847 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
115487808 AAACAAAGTC
*
115487818 AACTTTAATACTTA
1 AACTTAAATACTTA
115487832 AACTTAAATACTTA
1 AACTTAAATACTTA
115487846 AA
1 AA
115487848 TATATGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (14 bp):
AACTTAAATACTTA
Found at i:115488870 original size:11 final size:11
Alignment explanation
Indices: 115488854--115488878 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
115488844 TTAAAATTTA
115488854 TTGCTTTCAAC
1 TTGCTTTCAAC
115488865 TTGCTTTCAAC
1 TTGCTTTCAAC
115488876 TTG
1 TTG
115488879 ATGTCTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.24, G:0.12, T:0.48
Consensus pattern (11 bp):
TTGCTTTCAAC
Found at i:115490250 original size:20 final size:21
Alignment explanation
Indices: 115490225--115490273 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
115490215 CTTAAATTCA
115490225 TTTTAAATAATAAAAAATA-T
1 TTTTAAATAATAAAAAATATT
* **
115490245 TTTTAAA-ATTTTAAAATATT
1 TTTTAAATAATAAAAAATATT
115490265 TTTTAAATA
1 TTTTAAATA
115490274 CTTTATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.33
20 15 0.62
21 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTAAATAATAAAAAATATT
Found at i:115491826 original size:21 final size:20
Alignment explanation
Indices: 115491802--115491842 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
115491792 TTTAATGATT
*
115491802 ATTAAATTAATAATTGAATTA
1 ATTAAATTAAAAATT-AATTA
115491823 ATTAAATTAAAAATTAATTA
1 ATTAAATTAAAAATTAATTA
115491843 TTTTATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTAAATTAAAAATTAATTA
Found at i:115510571 original size:18 final size:18
Alignment explanation
Indices: 115510544--115510579 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
115510534 ATTAAATTAA
*
115510544 ATAAATTATTAAAAATTT
1 ATAAAATATTAAAAATTT
115510562 ATAAAATATTAAAAATTT
1 ATAAAATATTAAAAATTT
115510580 GGTTTGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAATATTAAAAATTT
Found at i:115514156 original size:29 final size:29
Alignment explanation
Indices: 115514114--115514183 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
115514104 ATGGTTCGTG
* * *
115514114 AAAATTGAATCAAATTAAAA-TGTCATATGT
1 AAAATTGCA-CAAAATAAAAGT-TCATATAT
*
115514144 AAAATTGCACAAAATCAAAGTTCATATAT
1 AAAATTGCACAAAATAAAAGTTCATATAT
*
115514173 AACATTGCACA
1 AAAATTGCACA
115514184 TTAGACTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.29
Consensus pattern (29 bp):
AAAATTGCACAAAATAAAAGTTCATATAT
Found at i:115516007 original size:13 final size:11
Alignment explanation
Indices: 115515979--115516021 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
115515969 AGTTAAATAT
115515979 TATTTTATTAA
1 TATTTTATTAA
115515990 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
115516003 TA-TTTATTAT
1 TATTTTATTAA
115516013 TATTTTATT
1 TATTTTATT
115516022 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:115516008 original size:23 final size:23
Alignment explanation
Indices: 115515982--115516025 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
115515972 TAAATATTAT
115515982 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
115516005 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
115516026 AAATGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:115518381 original size:11 final size:11
Alignment explanation
Indices: 115518362--115518425 Score: 69
Period size: 11 Copynumber: 5.9 Consensus size: 11
115518352 TATTTTGATG
115518362 CTATT-TTTTA
1 CTATTATTTTA
*
115518372 TTATTATTTT-
1 CTATTATTTTA
*
115518382 CTCACTATTTTA
1 CT-ATTATTTTA
115518394 CTATTATTTTA
1 CTATTATTTTA
*
115518405 CTATTATGTTA
1 CTATTATTTTA
*
115518416 CTACTATTTT
1 CTATTATTTT
115518426 GTTGTTATTG
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
10 5 0.11
11 37 0.84
12 2 0.05
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.62
Consensus pattern (11 bp):
CTATTATTTTA
Found at i:115518410 original size:33 final size:32
Alignment explanation
Indices: 115518362--115518425 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
115518352 TATTTTGATG
* *
115518362 CTATTTTTTATTATTAT-TTTCTCACTATTTTA
1 CTATTTTTTACTATTATGTTACT-ACTATTTTA
115518394 CTATTATTTTACTATTATGTTACTACTATTTT
1 CTATT-TTTTACTATTATGTTACTACTATTTT
115518426 GTTGTTATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 5 0.18
33 19 0.68
34 4 0.14
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.62
Consensus pattern (32 bp):
CTATTTTTTACTATTATGTTACTACTATTTTA
Found at i:115519456 original size:17 final size:18
Alignment explanation
Indices: 115519417--115519458 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
115519407 CTTAAGCAAA
115519417 CTTACTTTGAATATAATAT
1 CTTA-TTTGAATATAATAT
*
115519436 -TTATTTGGATA-AATAT
1 CTTATTTGAATATAATAT
115519452 CTTATTT
1 CTTATTT
115519459 TCGTATCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.24
17 13 0.62
18 3 0.14
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (18 bp):
CTTATTTGAATATAATAT
Found at i:115521039 original size:33 final size:35
Alignment explanation
Indices: 115521002--115521098 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
115520992 ATAGTTATAT
115521002 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
115521035 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
115521070 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATAATTTATATATT
115521099 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.14
35 10 0.20
37 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:115521882 original size:12 final size:12
Alignment explanation
Indices: 115521865--115521897 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
115521855 CGGCCCGCCC
115521865 ATATTAATTTTT
1 ATATTAATTTTT
115521877 ATATT-ATTTTT
1 ATATTAATTTTT
115521888 ATA-TAATTTT
1 ATATTAATTTT
115521898 AAAAAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:115534712 original size:9 final size:9
Alignment explanation
Indices: 115534687--115534719 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
115534677 ACTTTTTTTC
115534687 TTTATTTA-
1 TTTATTTAT
115534695 TTTATTTAT
1 TTTATTTAT
115534704 TTTATTTAT
1 TTTATTTAT
115534713 TATTATT
1 T-TTATT
115534720 AACTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 10 0.43
10 5 0.22
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTATTTAT
Found at i:115534752 original size:21 final size:21
Alignment explanation
Indices: 115534728--115534801 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 21
115534718 TTAACTTTAA
115534728 AAATTTTGAAATATATA-TTTG
1 AAATTTT-AAATATATATTTTG
*
115534749 AAATATTTTATTAATATATATATTTTT
1 -AA-A--TT-TTAA-ATATATATTTTG
115534776 AAATTTTAAATATATATTTTG
1 AAATTTTAAATATATATTTTG
115534797 AAATT
1 AAATT
115534802 ACTTTTTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
21 16 0.36
22 6 0.14
23 3 0.07
25 5 0.11
26 11 0.25
27 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (21 bp):
AAATTTTAAATATATATTTTG
Found at i:115534829 original size:22 final size:21
Alignment explanation
Indices: 115534791--115534845 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
115534781 TTAAATATAT
*
115534791 ATTTTGAA-ATTACTTTTTTAA
1 ATTTTAAATATTA-TTTTTTAA
115534812 ATTTTAAATATTATTTTTTAA
1 ATTTTAAATATTATTTTTTAA
115534833 ATATTTAAATATT
1 AT-TTTAAATATT
115534846 TTAAACTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTAAATATTATTTTTTAA
Found at i:115534928 original size:14 final size:15
Alignment explanation
Indices: 115534872--115534935 Score: 60
Period size: 14 Copynumber: 4.3 Consensus size: 15
115534862 GTTATTAGTT
*
115534872 TTATAATAATTTAAA
1 TTATAATATTTTAAA
* **
115534887 -TATAATTTAATTTATT
1 TTATAA--TATTTTAAA
115534903 TTATAATATTTTAAA
1 TTATAATATTTTAAA
115534918 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
115534932 TTAT
1 TTAT
115534936 TTTTAAAGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
14 16 0.39
15 13 0.32
16 7 0.17
17 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:115535189 original size:20 final size:20
Alignment explanation
Indices: 115535164--115535201 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
115535154 TCACTTTTTT
115535164 TTTTTACTTATTTATTATTA
1 TTTTTACTTATTTATTATTA
* *
115535184 TTTTTAGTTTTTTATTAT
1 TTTTTACTTATTTATTAT
115535202 CTTTTGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTACTTATTTATTATTA
Found at i:115535200 original size:17 final size:16
Alignment explanation
Indices: 115535178--115535256 Score: 63
Period size: 17 Copynumber: 4.7 Consensus size: 16
115535168 TACTTATTTA
115535178 TTATTATTTTTAGTTTT
1 TTATTATTTTT-GTTTT
115535195 TTATTATCTTTTGTCTTT
1 TTATTAT-TTTTGT-TTT
* * *
115535213 TTCCTTAATTTT-TTTC
1 TT-ATTATTTTTGTTTT
115535229 TTATT-TTATTTGTTTAT
1 TTATTATT-TTTGTTT-T
115535246 TTATTATTTTT
1 TTATTATTTTT
115535257 TATTAATTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 1 0.02
15 5 0.10
16 7 0.14
17 18 0.37
18 15 0.31
19 3 0.06
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (16 bp):
TTATTATTTTTGTTTT
Found at i:115535323 original size:25 final size:24
Alignment explanation
Indices: 115535273--115535329 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
115535263 TTTTAAAAAA
*
115535273 TTTAAA-ATGTATATTTGAAATGT
1 TTTAAATATATATATTTGAAATGT
*
115535296 TTTATAATATATATATTTTTAAAT-T
1 TTTA-AATATATATA-TTTGAAATGT
115535321 TTTAAATAT
1 TTTAAATAT
115535330 TATTTTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 4 0.14
24 7 0.24
25 11 0.38
26 7 0.24
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (24 bp):
TTTAAATATATATATTTGAAATGT
Found at i:115535352 original size:12 final size:12
Alignment explanation
Indices: 115535319--115535352 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
115535309 TATTTTTAAA
115535319 TTTTTAAA-TAT
1 TTTTTAAATTAT
115535330 TATTTTAAATTAT
1 T-TTTTAAATTAT
115535343 TTTTTAAATT
1 TTTTTAAATT
115535353 TTGAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.05
12 16 0.76
13 4 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTTTAAATTAT
Found at i:115535386 original size:22 final size:21
Alignment explanation
Indices: 115535338--115535389 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
115535328 ATTATTTTAA
** *
115535338 ATTATTTTTTAAATTTTGAAT
1 ATTATTTTTTAAACATTAAAT
115535359 ATTATTTTTTAAACATTAAAT
1 ATTATTTTTTAAACATTAAAT
115535380 ATATATTTTT
1 AT-TATTTTT
115535390 AAATTTTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTATTTTTTAAACATTAAAT
Found at i:115535390 original size:21 final size:21
Alignment explanation
Indices: 115535334--115535392 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
115535324 AAATATTATT
**
115535334 TTAAAT-TAT-TTTTTAAATT
1 TTAAATATATATTTTTAAACA
*
115535353 TTGAATAT-TATTTTTTAAACA
1 TTAAATATATA-TTTTTAAACA
115535374 TTAAATATATATTTTTAAA
1 TTAAATATATATTTTTAAA
115535393 TTTTGTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.19
20 1 0.03
21 23 0.72
22 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTAAATATATATTTTTAAACA
Found at i:115535480 original size:6 final size:6
Alignment explanation
Indices: 115535439--115535506 Score: 59
Period size: 6 Copynumber: 11.3 Consensus size: 6
115535429 CTCTGACATT
* * * *
115535439 TTTTTA TTTTTG TCTTTA TCTTTA TTTATT- TATTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA
*
115535487 -TTTTA TTTTTTA TTATTA TT
1 TTTTTA -TTTTTA TTTTTA TT
115535507 AATTTTAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
5 7 0.14
6 37 0.73
7 7 0.14
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:115535486 original size:24 final size:24
Alignment explanation
Indices: 115535440--115535506 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
115535430 TCTGACATTT
* * *
115535440 TTTTA-TTTTTGTCTTTATCTTTA
1 TTTTATTTTTTATTTTTATTTTTA
115535463 -TTTATTTATTTATTTTTATTTTTA
1 TTTTATTT-TTTATTTTTATTTTTA
*
115535487 TTTTATTTTTTATTATTATT
1 TTTTATTTTTTATTTTTATT
115535507 AATTTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 4 0.11
23 2 0.05
24 24 0.65
25 7 0.19
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (24 bp):
TTTTATTTTTTATTTTTATTTTTA
Found at i:115535493 original size:21 final size:22
Alignment explanation
Indices: 115535460--115535513 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
115535450 GTCTTTATCT
115535460 TTATTTA-TTTATTTATTT-TTA
1 TTATTTATTTTATTT-TTTATTA
115535481 TT-TTTATTTTATTTTTTATTA
1 TTATTTATTTTATTTTTTATTA
*
115535502 TTATTAATTTTA
1 TTATTTATTTTA
115535514 AAAAAACTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.24
21 14 0.48
22 8 0.28
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (22 bp):
TTATTTATTTTATTTTTTATTA
Found at i:115535500 original size:18 final size:18
Alignment explanation
Indices: 115535439--115535496 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
115535429 CTCTGACATT
* *
115535439 TTTTTATTTTTGTCTTTA
1 TTTTTATTTTTATATTTA
*
115535457 TCTTTATTTATT-TATTTA
1 TTTTTATTT-TTATATTTA
115535475 TTTTTATTTTTAT-TTTA
1 TTTTTATTTTTATATTTA
115535492 TTTTT
1 TTTTT
115535497 TATTATTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 11 0.31
18 22 0.63
19 2 0.06
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTATTTTTATATTTA
Found at i:115535576 original size:22 final size:23
Alignment explanation
Indices: 115535542--115535586 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
115535532 ATTTGAAATG
*
115535542 TTTTATAATATATATTTTTTTAA
1 TTTTATAATATATATATTTTTAA
115535565 TTTTA-AATATATATATTTTTAA
1 TTTTATAATATATATATTTTTAA
115535587 ATTGTTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTATAATATATATATTTTTAA
Found at i:115535651 original size:34 final size:34
Alignment explanation
Indices: 115535566--115535655 Score: 103
Period size: 33 Copynumber: 2.6 Consensus size: 34
115535556 TTTTTTTAAT
** * *
115535566 TTTAAATATATATATTTTTAAATTGTTTTTCTAAAT
1 TTTAAATAT-TAT-TTTTTAAATCATTTTTCAAAAA
115535602 TTTAAATATTA-TTTTTAAATCATTGTTT-AAAAA
1 TTTAAATATTATTTTTTAAATCATT-TTTCAAAAA
115535635 TTTAAATATTATTTTTTAAAT
1 TTTAAATATTATTTTTTAAAT
115535656 ATTAAATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
33 25 0.52
34 12 0.25
35 2 0.04
36 9 0.19
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (34 bp):
TTTAAATATTATTTTTTAAATCATTTTTCAAAAA
Found at i:115535677 original size:21 final size:21
Alignment explanation
Indices: 115535631--115535678 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
115535621 TCATTGTTTA
115535631 AAAAT-TTAAATATTATTTTT
1 AAAATATTAAATATTATTTTT
*
115535651 TAAATATTAAATA-TATTTTT
1 AAAATATTAAATATTATTTTT
115535671 AATAATAT
1 AA-AATAT
115535679 AAAACATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AAAATATTAAATATTATTTTT
Found at i:115535793 original size:23 final size:24
Alignment explanation
Indices: 115535756--115535837 Score: 96
Period size: 23 Copynumber: 3.4 Consensus size: 24
115535746 ATATTTTAAT
*
115535756 TTTTTATAATT-TTTTTAATTATGA
1 TTTTTA-AATTATTTTAAATTATGA
115535780 -TTTTAAATTATTTTAAATTATGA
1 TTTTTAAATTATTTTAAATTATGA
* *
115535803 TTTTTGAAATTATTTAAAATATATTA
1 TTTTT-AAATTATTTTAAAT-TATGA
115535829 TTTTTAAAT
1 TTTTTAAAT
115535838 ATATGACATT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
22 4 0.08
23 17 0.33
24 4 0.08
25 17 0.33
26 9 0.18
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTTAAATTATTTTAAATTATGA
Done.