Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 355 of 373
Found at i:117811880 original size:23 final size:22
Alignment explanation
Indices: 117811836--117811899 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 22
117811826 CCCTCCCCCC
*
117811836 AAAAAAAAACCTAACCAAAAAAA
1 AAAAAAAAACCTAACC-CAAAAA
117811859 AAAGAAAAAACCTAACCCAAAAA
1 AAA-AAAAAACCTAACCCAAAAA
117811882 AAAAGAAAAACCTAACCC
1 AAAA-AAAAACCTAACCC
117811900 CCCCCAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
22 1 0.03
23 24 0.63
24 13 0.34
ACGTcount: A:0.70, C:0.22, G:0.03, T:0.05
Consensus pattern (22 bp):
AAAAAAAAACCTAACCCAAAAA
Found at i:117812146 original size:14 final size:13
Alignment explanation
Indices: 117812127--117812173 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 13
117812117 CCTAAAGGTG
117812127 ATTTTATCTTCTTT
1 ATTTTATCTT-TTT
117812141 ATTTTACTCTTTTTT
1 ATTTTA-TC-TTTTT
117812156 ATTTTTAT-TTTTT
1 A-TTTTATCTTTTT
117812169 ATTTT
1 ATTTT
117812174 TTTTCTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 4 0.13
13 6 0.20
14 6 0.20
15 7 0.23
16 7 0.23
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTTATCTTTTT
Found at i:117812156 original size:15 final size:14
Alignment explanation
Indices: 117812127--117812173 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
117812117 CCTAAAGGTG
*
117812127 ATTTTATCTTCTTT
1 ATTTTATCTTTTTT
117812141 ATTTTACTCTTTTTT
1 ATTTTA-TCTTTTTT
*
117812156 ATTTT-TATTTTTT
1 ATTTTATCTTTTTT
117812169 ATTTT
1 ATTTT
117812174 TTTTCTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 12 0.40
14 6 0.20
15 12 0.40
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.77
Consensus pattern (14 bp):
ATTTTATCTTTTTT
Found at i:117812237 original size:13 final size:14
Alignment explanation
Indices: 117812213--117812267 Score: 69
Period size: 15 Copynumber: 3.9 Consensus size: 14
117812203 TATATACATC
117812213 ATAATAAAAAATAT
1 ATAATAAAAAATAT
117812227 ATAATAAAAATATAT
1 ATAATAAAAA-ATAT
117812242 ATACA-AAACAAATAT
1 ATA-ATAAA-AAATAT
117812257 ATAA-AAAAAAT
1 ATAATAAAAAAT
117812268 TACCTTTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.11
14 14 0.37
15 17 0.45
16 3 0.08
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (14 bp):
ATAATAAAAAATAT
Found at i:117813811 original size:23 final size:23
Alignment explanation
Indices: 117813779--117813832 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
117813769 ATTATTATGG
*
117813779 ATATCATTTTTAAGG-AATATATT
1 ATAT-ATTTTTTAGGAAATATATT
117813802 ATATATTTTTTAGGCAAAATATATT
1 ATATATTTTTTAGG--AAATATATT
117813827 ATATAT
1 ATATAT
117813833 CTATTCTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 9 0.33
23 4 0.15
25 14 0.52
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (23 bp):
ATATATTTTTTAGGAAATATATT
Found at i:117818063 original size:19 final size:19
Alignment explanation
Indices: 117818039--117818090 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
117818029 TTATATAATC
117818039 AAAAGAAATTTAAGTTTCA
1 AAAAGAAATTTAAGTTTCA
117818058 AAAAGAAATTTAAGTTTCA
1 AAAAGAAATTTAAGTTTCA
*
117818077 CAAAGAAATATTAA
1 AAAAGAAAT-TTAA
117818091 TTATGAGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 27 0.87
20 4 0.13
ACGTcount: A:0.56, C:0.06, G:0.10, T:0.29
Consensus pattern (19 bp):
AAAAGAAATTTAAGTTTCA
Found at i:117819052 original size:31 final size:31
Alignment explanation
Indices: 117819017--117819075 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
117819007 AAAATAATTG
117819017 TTAAACTATTCAAAA-ATTTTCATTTAAGTAA
1 TTAAACTATTCAAAAGATTTT-ATTTAAGTAA
*
117819048 TTAAACTATTTAAAAGATTTTATTTAAG
1 TTAAACTATTCAAAAGATTTTATTTAAG
117819076 GTACTAGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (31 bp):
TTAAACTATTCAAAAGATTTTATTTAAGTAA
Found at i:117822361 original size:30 final size:30
Alignment explanation
Indices: 117822327--117822392 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
117822317 ATATTATAAT
*
117822327 TTTTAT-AATTACATTCATAAAAATTAATTC
1 TTTTATCAA-TACATTCATAAAAATTAATTA
* * *
117822357 TTTTATCAATACATTTATAGAATTTAATTA
1 TTTTATCAATACATTCATAAAAATTAATTA
117822387 TTTTAT
1 TTTTAT
117822393 TTATAAATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.52
Consensus pattern (30 bp):
TTTTATCAATACATTCATAAAAATTAATTA
Found at i:117830565 original size:24 final size:24
Alignment explanation
Indices: 117830520--117830570 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
117830510 AAGTCTGTCA
***
117830520 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAACAGATAAG
117830544 GGATAGGATTTAGGAACAGATAAG
1 GGATAGGATTTAGGAACAGATAAG
117830568 GGA
1 GGA
117830571 GGAAATCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.37, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAACAGATAAG
Found at i:117837711 original size:24 final size:24
Alignment explanation
Indices: 117837666--117837716 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
117837656 AAGTCTGTCA
***
117837666 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGACCAGATAAG
117837690 GGATAGGATTTAGGACCAGATAAG
1 GGATAGGATTTAGGACCAGATAAG
117837714 GGA
1 GGA
117837717 GGAAATCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGACCAGATAAG
Found at i:117842521 original size:26 final size:26
Alignment explanation
Indices: 117842492--117842599 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
117842482 TGATACAAAT
* *
117842492 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATATTCCA
*
117842518 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
117842544 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
117842570 TGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
117842596 TGAT
1 TGAT
117842600 GGAATTTCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:117842554 original size:52 final size:52
Alignment explanation
Indices: 117842492--117842599 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
117842482 TGATACAAAT
*
117842492 TGATAATGGGTTAGGTAAATGTTCCGTGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
117842544 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
117842596 TGAT
1 TGAT
117842600 GGAATTTCAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:117850535 original size:26 final size:26
Alignment explanation
Indices: 117850506--117850613 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
117850496 TGATACAAAT
117850506 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
117850532 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
117850558 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
117850584 TGATAATGGTTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
117850610 TGAT
1 TGAT
117850614 GGGATTTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:117851565 original size:22 final size:22
Alignment explanation
Indices: 117851537--117851579 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
117851527 AGACAGCTTG
117851537 CTATGATCTGTAGGTGTGGTTA
1 CTATGATCTGTAGGTGTGGTTA
117851559 CTATGATCTGTAGGTGTGGTT
1 CTATGATCTGTAGGTGTGGTT
117851580 GGCCTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.09, G:0.33, T:0.42
Consensus pattern (22 bp):
CTATGATCTGTAGGTGTGGTTA
Found at i:117868224 original size:27 final size:27
Alignment explanation
Indices: 117868193--117868319 Score: 150
Period size: 27 Copynumber: 4.7 Consensus size: 27
117868183 TTAGTTTACC
117868193 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*
117868220 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* * *
117868247 AAATTACCGAAATACCACTAGTTTGTGA
1 AAATTACCAAAATACCCCTAATTTGT-A
*
117868275 AAA-TACCAAAATACCCCT-ATATGGTA
1 AAATTACCAAAATACCCCTAAT-TTGTA
* **
117868301 GAATTACTGAAATACCCCT
1 AAATTACCAAAATACCCCT
117868320 GTAGGGTAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.05
27 79 0.91
28 4 0.05
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:117868260 original size:54 final size:54
Alignment explanation
Indices: 117868193--117868319 Score: 168
Period size: 54 Copynumber: 2.4 Consensus size: 54
117868183 TTAGTTTACC
* *
117868193 AAATTACCAAAATACCCCTAATTTGT-AAAATTACCAAAATACCCCTAGT-TTGTA
1 AAATTACCGAAATACCCCTAATTTGTGAAAA-TACCAAAATACCCCTA-TATGGTA
* *
117868247 AAATTACCGAAATACCACTAGTTTGTGAAAATACCAAAATACCCCTATATGGTA
1 AAATTACCGAAATACCCCTAATTTGTGAAAATACCAAAATACCCCTATATGGTA
* *
117868301 GAATTACTGAAATACCCCT
1 AAATTACCGAAATACCCCT
117868320 GTAGGGTAGA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
53 1 0.02
54 59 0.92
55 4 0.06
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTAATTTGTGAAAATACCAAAATACCCCTATATGGTA
Found at i:117868327 original size:27 final size:27
Alignment explanation
Indices: 117868283--117868495 Score: 243
Period size: 27 Copynumber: 7.9 Consensus size: 27
117868273 GAAAATACCA
* *
117868283 AAATACCCCTATATGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
117868310 AAATACCCCTGTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* * *
117868337 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
** *
117868364 AAATACCCCT-TAGAATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
117868390 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
117868417 AAATACCCTTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
117868444 AAATACCCCTATAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* * * *
117868471 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
117868496 CATTTTACCC
Statistics
Matches: 157, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
26 25 0.16
27 132 0.84
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:117868333 original size:81 final size:81
Alignment explanation
Indices: 117868197--117868494 Score: 284
Period size: 81 Copynumber: 3.7 Consensus size: 81
117868187 TTTACCAAAT
* * * ** * *
117868197 TACCAAAATACCCCTA-ATTTGTAAAATTACCAAAATACCCCTAGT-TTGTAAAATTACCGAAAT
1 TACCAAAATACCCCTATA-TGGTAGAATTACCGAAATACCCCT-GTAGGGTAGAATTATCGAAAT
**
117868260 ACCACTAGT-TTGT-GAAAA
64 ACC-CTAGTAGGGTAG-AAA
*
117868278 TACCAAAATACCCCTATATGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATAC
1 TACCAAAATACCCCTATATGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATAC
*
117868343 CCTTGTAGGGTAGAAA
66 CCTAGTAGGGTAGAAA
* * *
117868359 TACCGAAATACCCCT-TA-GAATAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATA
1 TACCAAAATACCCCTATATG-GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATA
* * *
117868422 CCCTTGTAAGGTAGAAT
65 CCCTAGTAGGGTAGAAA
** * * * * * *
117868439 TACTGAAATACCCCTATAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAATTA
1 TACCAAAATACCCCTATATGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA
117868495 CCATTTTACC
Statistics
Matches: 186, Mismatches: 24, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 78 0.42
81 104 0.56
82 3 0.02
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (81 bp):
TACCAAAATACCCCTATATGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATAC
CCTAGTAGGGTAGAAA
Found at i:117868410 original size:80 final size:80
Alignment explanation
Indices: 117868275--117868494 Score: 298
Period size: 80 Copynumber: 2.7 Consensus size: 80
117868265 TAGTTTGTGA
* *
117868275 AAATACCAAAATACCCCTATATGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAA
1 AAATACCGAAATACCCCTATA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAA
*
117868340 TACCCTTGTAGGGTAG
65 TACCCTTGTAAGGTAG
* *
117868356 AAATACCGAAATACCCCT-TAGAATAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
1 AAATACCGAAATACCCCTATAG-GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAA
117868420 TACCCTTGTAAGGTAG
65 TACCCTTGTAAGGTAG
* * * * * * *
117868436 AATTACTGAAATACCCCTATAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAATTA
1 AAATACCGAAATACCCCTATA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA
117868495 CCATTTTACC
Statistics
Matches: 123, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 72 0.59
81 49 0.40
82 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (80 bp):
AAATACCGAAATACCCCTATAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAAT
ACCCTTGTAAGGTAG
Found at i:117868435 original size:107 final size:107
Alignment explanation
Indices: 117868278--117868478 Score: 287
Period size: 107 Copynumber: 1.9 Consensus size: 107
117868268 TTTGTGAAAA
* *
117868278 TACCAAAATACCCCTATATGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-TCGAAATA
1 TACCAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACT-GAAATA
* *
117868342 CCCTTGTAGGGTAGAAATACCGAAATACCCCTTAGAATAGAAT
65 CCCCTATAGGGTAGAAATACCGAAATACCCCTTAGAATAGAAT
* * * *
117868385 TACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTGTAAGGTAGAATTACTGAAATAC
1 TACCAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATAC
* * *
117868450 CCCTATAGGGTAGAATTATCGAGATACCC
66 CCCTATAGGGTAGAAATACCGAAATACCC
117868479 TTGTGGGGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 81 0.99
108 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (107 bp):
TACCAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATAC
CCCTATAGGGTAGAAATACCGAAATACCCCTTAGAATAGAAT
Found at i:117869047 original size:6 final size:6
Alignment explanation
Indices: 117869010--117869091 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
117869000 TTACATTCAC
* * *
117869010 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
117869059 -TCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
117869092 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
5 4 0.07
6 48 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:117869089 original size:31 final size:31
Alignment explanation
Indices: 117869010--117869082 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
117869000 TTACATTCAC
* * *
117869010 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
117869041 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
117869072 ATTCTGATTCT
1 ATTCTGATTCT
117869083 AGTTCTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:117870391 original size:88 final size:88
Alignment explanation
Indices: 117870182--117870841 Score: 950
Period size: 88 Copynumber: 7.5 Consensus size: 88
117870172 ACGACATCAG
* * * * * *
117870182 TGAAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGGTCGGAGACAGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* *
117870247 CGCTAAGCAGTA--G-AATAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * *
117870267 TG-AGATTACATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
*
117870331 CCCTAAGCAGTAGGGTAACAAGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * *
117870354 TGGAAATTACAGATCTTATCTCTCTAAGCAATAGTGGAGTAGATCGAAGACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
*
117870419 CCTTAAGCAGTAGGGTAACAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * * *
117870442 TGAAAATTACAAATCTTATTTCCCTAAGCAATAGTGGAGTAGGTCGAAGACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
*
117870507 CCCTAAGCAGTAAGGTAACAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * *
117870530 TAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACAGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
*
117870595 CCCTAAGCAGTAGGGTAATAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * * *
117870618 TGGAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* *
117870683 CTCTAAGCAGTAGGGTAACAGAC
66 CCCTAAGCAGTAGGGTAACAGGC
* *
117870706 TGAAAATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAACACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
117870771 CCCTAAGCAGTAGGGTAACAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
*
117870794 TAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
117870842 AACAATGAAC
Statistics
Matches: 516, Mismatches: 55, Indels: 5
0.90 0.10 0.01
Matches are distributed among these distances:
84 66 0.13
85 2 0.00
86 1 0.00
87 7 0.01
88 440 0.85
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (88 bp):
TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
CCCTAAGCAGTAGGGTAACAGGC
Found at i:117870555 original size:44 final size:44
Alignment explanation
Indices: 117870507--117870826 Score: 113
Period size: 44 Copynumber: 7.3 Consensus size: 44
117870497 AGCCTTAACC
117870507 CCCTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCT
* * * * * * * * *
117870551 CCCTAAGCAGT-A-GTAGAGTAGATCGAAGACAGT-GAG-CCTTAACC
1 CCCTAAGCAGTAAGGTA-A-CAG-GCTAA-AAATTACAGATCTTATCT
* * ** *
117870595 CCCTAAGCAGTAGGGTAATAGGCTGGAAATTATAGATCTTATCT
1 CCCTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCT
* * ** * * * * *
117870639 CCCTAAGCAGT-AGTGGAGCAGATTGAAGA-CAGC-GAGCCTTAAC-
1 CCCTAAGCAGTAAG-GTAACAGGCTAAAAATTA-CAGA-TCTTATCT
* * *
117870682 CCTCTAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTATCT
1 CC-CTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCT
* * * * * *** * * * *
117870727 CCCTAAGCAAT-AGTGGAGCAGATCGAACACGGT-GAG-CCTTAACC
1 CCCTAAGCAGTAAG-GTAACAG-GCTAA-AAATTACAGATCTTATCT
*
117870771 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCT
117870815 CCCTAAGCAGTA
1 CCCTAAGCAGTA
117870827 GTGGAGCAGA
Statistics
Matches: 187, Mismatches: 67, Indels: 44
0.63 0.22 0.15
Matches are distributed among these distances:
42 8 0.04
43 17 0.09
44 137 0.73
45 17 0.09
46 8 0.04
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (44 bp):
CCCTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCT
Found at i:117870678 original size:264 final size:264
Alignment explanation
Indices: 117870194--117870929 Score: 1027
Period size: 264 Copynumber: 2.8 Consensus size: 264
117870184 AAGATTGCAG
* * * * *
117870194 ATCTTATCTCCCTAAGCAGTAGTGAAGCAGGTCGGAGACAGTGAGCCTTAACCCGCTAAGCAGT-
1 ATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTA
* * * * *
117870258 A-G-AATAGGCT-GAGATTACATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGT
66 AGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGT
* * * *
117870320 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTGGAAATTACAGATCTTATCTCTCTAAGCAA
131 GAGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAG
* * * *
117870385 TAGTGGAGTAGATCGAAGACGGTGAGCCTTAACCC-CTTAAGCAGTAGGGTAACAGGCTGAAAAT
196 TAGTGGAGTAGATTGAAGACAGCGAGCCTTAACCCTC-TAAGCAGTAGGGTAACAGACTGAAAAT
117870449 TACAA
260 TACAA
* *
117870454 ATCTTATTTCCCTAAGCAATAGTGGAGTAGGTCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTA
* * *
117870519 AGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACAGT
66 AGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGT
*
117870584 GAGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAATTATAGATCTTATCTCCCTAAGCAG
131 GAGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAG
*
117870649 TAGTGGAGCAGATTGAAGACAGCGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGACTGAAAATT
196 TAGTGGAGTAGATTGAAGACAGCGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGACTGAAAATT
*
117870714 ACAG
261 ACAA
* *
117870718 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAACACGGTGAGCCTTAACCCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTA
* *
117870783 GGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAAT
66 AGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGT
* ** ** * ** * * *
117870848 GAACCTTGTCTTCCTGAGCAACAGTGG-AGTAGGCT-GAAGATTACAAATCATATCTCCCTAAGC
131 GAGCCTTAACCCCCTAAGCAGTAG-GGTAATAGGCTGGAA-ATTACAGATCTTATCTCCCTAAGC
117870911 AGTAGTGGAGTAGATTGAA
194 AGTAGTGGAGTAGATTGAA
117870930 ATAAAGATTC
Statistics
Matches: 421, Mismatches: 48, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
260 57 0.14
261 1 0.00
262 1 0.00
263 10 0.02
264 349 0.83
265 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (264 bp):
ATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTA
AGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGT
GAGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAG
TAGTGGAGTAGATTGAAGACAGCGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGACTGAAAATT
ACAA
Found at i:117870882 original size:88 final size:88
Alignment explanation
Indices: 117870182--117870930 Score: 923
Period size: 88 Copynumber: 8.6 Consensus size: 88
117870172 ACGACATCAG
* * * * * *
117870182 TGAAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGGTCGGAGACAGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
* *
117870247 CGCTAAGCAGTA--G-AATAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * *
117870267 TG-AGATTACATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
*
117870331 CCCTAAGCAGTAGGGTAACAAGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * * * *
117870354 TGGAAATTACAGATCTTATCTCTCTAAGCAATAGTGGAGTAGATCGAAGACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
*
117870419 CCTTAAGCAGTAGGGTAACAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * * * * *
117870442 TGAAAATTACAAATCTTATTTCCCTAAGCAATAGTGGAGTAGGTCGAAGACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
*
117870507 CCCTAAGCAGTAAGGTAACAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * *
117870530 TAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACAGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
*
117870595 CCCTAAGCAGTAGGGTAATAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * * *
117870618 TGGAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
* *
117870683 CTCTAAGCAGTAGGGTAACAGAC
66 CCCTAAGCAGTAGGGTAACAGGC
* * *
117870706 TGAAAATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAACACGGTGAGCCTTAACC
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
117870771 CCCTAAGCAGTAGGGTAACAGGC
66 CCCTAAGCAGTAGGGTAACAGGC
* * * ** *
117870794 TAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAATGAACCTTGTCT
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
* * ** **
117870859 TCCTGAGCAACAGTGG-AGTAGGC
66 CCCTAAGCAGTAG-GGTAACAGGC
* * * * *
117870882 TGAAGATTACAAATCATATCTCCCTAAGCAGTAGTGGAGTAGATTGAAA
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
117870931 TAAAGATTCC
Statistics
Matches: 585, Mismatches: 74, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
84 66 0.11
85 2 0.00
86 1 0.00
87 7 0.01
88 507 0.87
89 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (88 bp):
TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACAGTGAGCCTTAACC
CCCTAAGCAGTAGGGTAACAGGC
Found at i:117879031 original size:132 final size:130
Alignment explanation
Indices: 117878572--117879047 Score: 485
Period size: 131 Copynumber: 3.6 Consensus size: 130
117878562 TAGCAAAATC
* * * * * *
117878572 GTGCCCTAACGTGCTGAGTTGCAATTTCCCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATT
1 GTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTTAAAACAATCGAATATTCCTTCGAAATT
* * *
117878637 TCACTCATGTCTTCTAAAAATCCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAGT
66 TCACTCATGTTTTCTAAAAA-CCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTCGGGAAT
117878702 CA
130 -A
* ** * * * **
117878704 -TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTT-TAGGTT
1 GTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTTAAAACAATCGAATATTCCTTCGA-AAT
* * *
117878767 TTCACTCGTGTTTAT-TAAAAACCTTCCAAAACGAAGACAATACTCGGTGTTTGATAATTCGGGA
65 TTCACTCATGTTT-TCTAAAAACCTT-TAAAACGAAGGCAATACTCGGTGTTTGATAATTCGGGA
*
117878831 ATC
128 ATA
* ** * *
117878834 GTGCCCTAACGTGTTGGGTTGTGATTTCTCGTTT-TTTCAAAACAATCGAAGATTCCTTCGAAAT
1 GTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTT-AAAACAATCGAATATTCCTTCGAAAT
* * * * **
117878898 TTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGGA
65 TTCACTCATGTTTTCTAAAAA-CCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTC-GGGA
117878963 ATA
128 ATA
* * * * *
117878966 GTACCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTTAAAATAATCGAATA-TCTCTTTGGAAT
1 GTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTTAAAACAATCGAATATTC-CTTCGAAAT
* *
117879030 TTCACTCGTATTTTCTAA
65 TTCACTCATGTTTTCTAA
117879048 GGTGAGGCAA
Statistics
Matches: 283, Mismatches: 50, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
130 8 0.03
131 198 0.70
132 74 0.26
133 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (130 bp):
GTGCCCTAACGTGCTGGGTTGCAATTTCCCGTTTGTTTAAAACAATCGAATATTCCTTCGAAATT
TCACTCATGTTTTCTAAAAACCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTCGGGAATA
Found at i:117880648 original size:13 final size:14
Alignment explanation
Indices: 117880632--117880667 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
117880622 CAATCTCATA
117880632 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
117880645 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
117880658 TCTC-ATTTCA
1 TCTCAATTTCA
117880668 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:117880657 original size:18 final size:19
Alignment explanation
Indices: 117880619--117880659 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
117880609 TGGTTCATGT
117880619 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
117880638 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
117880656 TTTC
1 TTTC
117880660 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:117880849 original size:39 final size:39
Alignment explanation
Indices: 117880806--117880917 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 39
117880796 TCGGATAGTT
*
117880806 CGAAGCAATATTTGACACCCAGTGTCTCATCG-GCCTAGC
1 CGAAG-AATATTTGACACCCAGTGTCTCATCGAACCTAGC
* * ** ** * *
117880845 CGAAGAAAAGTTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGAATATTTGACACCCAGTGTCTCATCGAACCTAGC
*
117880884 CGAAGAAATATAGTGACACCCAGTGTCTCATCGA
1 CGAAG-AATAT-TTGACACCCAGTGTCTCATCGA
117880918 CTCGAGGTCG
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
38 20 0.37
39 14 0.26
40 3 0.06
41 17 0.31
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (39 bp):
CGAAGAATATTTGACACCCAGTGTCTCATCGAACCTAGC
Found at i:117882520 original size:5 final size:5
Alignment explanation
Indices: 117882510--117882562 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
117882500 TTACTTATTT
* * *
117882510 ATATA ATATAA TATATA ATATA CTATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
117882558 ATATA
1 ATATA
117882563 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:117882526 original size:12 final size:12
Alignment explanation
Indices: 117882509--117882564 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
117882499 TTTACTTATT
117882509 TATATAATATAA
1 TATATAATATAA
117882521 TATATAATATACTA
1 TATATAATATA--A
117882535 TACTATAATATAA
1 TA-TATAATATAA
*
117882548 TA-ATAATTTAA
1 TATATAATATAA
117882559 TATATA
1 TATATA
117882565 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 14 0.36
13 3 0.08
14 3 0.08
15 9 0.23
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:117885930 original size:46 final size:46
Alignment explanation
Indices: 117885877--117886060 Score: 305
Period size: 46 Copynumber: 4.0 Consensus size: 46
117885867 AGTGTGCTCT
*
117885877 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
117885923 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
117885969 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
117886015 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
117886061 ATGACAGTAA
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 130 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:117886066 original size:46 final size:46
Alignment explanation
Indices: 117885882--117886113 Score: 257
Period size: 46 Copynumber: 5.0 Consensus size: 46
117885872 GCTCTCTGAT
* * * * *
117885882 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAAAGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
117885928 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAAAGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * **
117885974 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAAAGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
117886020 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAAAGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
117886066 AGTAAAGGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 A-TGAA--AA-GAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
117886114 TCAAAGATAA
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 130 0.78
47 3 0.02
49 2 0.01
50 32 0.19
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAAAGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:117898486 original size:26 final size:26
Alignment explanation
Indices: 117898440--117898492 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
117898430 TCAAACATGC
*
117898440 ATTTAGGTCAATTTAACCCTAGTGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
117898466 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
117898492 A
1 A
117898493 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:117907608 original size:31 final size:30
Alignment explanation
Indices: 117907548--117907617 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 30
117907538 GTAAATTTAT
117907548 TTAAAAATTTTGTAAAAAATAAAAAAAATA
1 TTAAAAATTTTGTAAAAAATAAAAAAAATA
* * **
117907578 TTATAAATTTTTTAAATAAATTTAAAAAATA
1 TTAAAAATTTTGTAAA-AAATAAAAAAAATA
117907609 TTAAAAATT
1 TTAAAAATT
117907618 AATTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 14 0.41
31 20 0.59
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (30 bp):
TTAAAAATTTTGTAAAAAATAAAAAAAATA
Found at i:117915942 original size:15 final size:15
Alignment explanation
Indices: 117915924--117915955 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
117915914 GTCCGACCCA
*
117915924 AAACTAAAAATAAAT
1 AAACAAAAAATAAAT
117915939 AAACAAAAAATAAAT
1 AAACAAAAAATAAAT
117915954 AA
1 AA
117915956 TAATCATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACAAAAAATAAAT
Found at i:117933398 original size:38 final size:38
Alignment explanation
Indices: 117933352--117933443 Score: 114
Period size: 45 Copynumber: 2.3 Consensus size: 38
117933342 AGTGGATCGA
117933352 AGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGATCGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
117933389 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGAT--C-----GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
117933434 AGATCGCAGA
1 AGATCGCAGA
117933444 AAGCAGATCT
Statistics
Matches: 47, Mismatches: 0, Indels: 15
0.76 0.00 0.24
Matches are distributed among these distances:
37 4 0.09
38 5 0.11
43 1 0.02
45 37 0.79
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (38 bp):
AGATCGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
Found at i:117933423 original size:132 final size:133
Alignment explanation
Indices: 117932862--117934179 Score: 1278
Period size: 132 Copynumber: 10.0 Consensus size: 133
117932852 GGATGGATTG
*** * * * * * *
117932862 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCC
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * * * * * * * *
117932926 TATCTTCCTATATTGGTA-GAAGTGGATCGACGA-CGCAGAT-CTGGTCTTCCCATATTGGTGGC
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCT-ATCTTCCTATATTGGTAG-
117932988 GAAGT
129 GAAGT
* *** *** * * * *
117932993 AGATCGCAGAAAACAGATCTTGTCTTCATGTATTGG-CATGAAGTAGATCGAAGATAGCAGGTCC
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * * * * * * * * * *
117933057 TATCTTCCTATATTGGTAGGAAGTGGATCGACGA-CGCAGATCTTGTCTTCCCATACTGGTGGCG
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-G
117933121 AAGT
130 AAGT
*** * * * * * *
117933125 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCC
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * * * * * * * * *
117933189 TATCTTCCTATATTGGTAGGAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATACTGGTGGCG
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-G
117933253 AAGT
130 AAGT
*** * * * * ** *
117933257 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGAAGATCGAAGGTAGCAGATCC
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * * * * * * * *
117933321 TATCCTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCG
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-G
117933385 AAGT
130 AAGT
117933389 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * *
117933454 TGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGA
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGA
117933519 AGT
131 AGT
* * *
117933522 GGATCG-ACG-ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
1 AGATCGCA-GAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
* * *
117933585 TTGTCTTCATGTATTGG-CGTTAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG
65 TTGTCTTCATGTATTGGTAG-GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG
117933649 GAAGT
129 GAAGT
* * * * *
117933654 GGATCG-ACG-ACGCAAATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
1 AGATCGCA-GAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
* * * *
117933717 TTGTCTTCATGTATTGG-CGTGAAGAAGATCGAAGGTAGCATATCCTAT-TTCCTATATTGGTAG
65 TTGTCTTCATGTATTGGTAG-GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG
117933780 GAAGT
129 GAAGT
* * *
117933785 GGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * * *
117933849 TGTCTTCATGTATTGGCATGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGA
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGA
117933914 AGT
131 AGT
* * * *
117933917 GGATCGAAG-ATGCAGATCTTGTCTCCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
* * * *
117933981 TGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGA
66 TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGA
117934046 AGT
131 AGT
* * *
117934049 AGATC-CA-AGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCACATAAAGCAGATC
1 AGATCGCAGA-AAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
* * * * * ** *
117934112 TTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAACAGTTTCGGT-TTCCTATACTGGTAG
65 TTGTCTTCATGTATTGGTAG-GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG
117934175 GAAGT
129 GAAGT
117934180 GGATTGAAAA
Statistics
Matches: 1100, Mismatches: 74, Indels: 26
0.92 0.06 0.02
Matches are distributed among these distances:
131 220 0.20
132 797 0.72
133 61 0.06
134 22 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (133 bp):
AGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCT
TGTCTTCATGTATTGGTAGGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGA
AGT
Found at i:117933519 original size:309 final size:309
Alignment explanation
Indices: 117933023--117933724 Score: 1167
Period size: 309 Copynumber: 2.3 Consensus size: 309
117933013 TGTCTTCATG
* * * * * * * *
117933023 TATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGATCG
1 TATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCG
*
117933087 -ACG-ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCT
65 CA-GAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCT
*
117933150 TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGG
129 TCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGG
*
117933215 ATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGT
194 ATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGT
*
117933280 CTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCCTCCTA
259 CTTCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCCTCCTA
*
117933331 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
1 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGC
*
117933396 AGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTC
66 AGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTC
117933461 ATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGAT
131 ATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGAT
117933526 CGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCT
196 CGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCT
* * * *
117933591 TCATGTATTGGCGTTAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
261 TCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCCTCCTA
* * * *
117933640 TATTGGTAGGAAGTGGATCGACGACGCAAATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGC
1 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGC
117933705 AGAAAGCAGATCTTGTCTTC
66 AGAAAGCAGATCTTGTCTTC
117933725 ATGTATTGGC
Statistics
Matches: 368, Mismatches: 23, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
307 22 0.06
308 33 0.09
309 313 0.85
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (309 bp):
TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGC
AGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTC
ATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGAT
CGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCT
TCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCCTCCTA
Found at i:117933879 original size:263 final size:264
Alignment explanation
Indices: 117933340--117934183 Score: 1291
Period size: 263 Copynumber: 3.2 Consensus size: 264
117933330 ATATTGGTAG
* * * * * *
117933340 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG-CAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAC-G-AAGC
117933403 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
63 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
* *
117933468 GGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGAC
128 GGCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
*
117933533 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
193 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
117933598 TTGGCGT
258 TTGGCGT
* * * *
117933605 TAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAAA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGAAGCAGA
* *
117933670 TCTTATCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * * **
117933735 GTGAAGAAGATCGAAGGTAGCATATCCTAT-TTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
131 ATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
117933799 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
196 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
*
117933864 GCAT
261 GCGT
* * * *
117933868 GAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGAAGCAGA
*
117933933 TCTTGTCTCCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * *
117933998 ATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTAGATCCAAGATGCA
131 ATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
* *
117934063 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCACATAAAGCAGATCTTGTCTTCATGTATTG
196 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
117934128 GCGT
261 GCGT
* * * * ** *
117934132 GAAGTAGATCAAAGATAACAGTTTCGGT-TTCCTATACTGGTAGGAAGTGGAT
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGAT
117934184 TGAAAAACAG
Statistics
Matches: 525, Mismatches: 51, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
263 267 0.51
264 210 0.40
265 25 0.05
266 23 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (264 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGAAGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
ATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
GCGT
Found at i:117933896 original size:395 final size:396
Alignment explanation
Indices: 117933368--117934183 Score: 1312
Period size: 395 Copynumber: 2.1 Consensus size: 396
117933358 AGATCTTGTC
* * * *
117933368 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TTCCTATATTGGTAG-GAAGTGGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
* *
117933433 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCC
65 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATCC
* *
117933498 TATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGA
130 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTCCCCATACTGGTGGCGA
* *
117933563 AGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTTAAGTAGATCGAAGATAGCAGGT
195 AGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGT
* * * *
117933628 CCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAAATCTTATCTTCCCATACTGGTGGC
260 CCTATCTTCCTATATTGATAGGAAGTAGATCCAAGACGCAAATCTTATCTTCCCATACTGGTGGC
* * * *
117933693 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCA-
325 GAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCAAAGATAACAG
*
117933757 TATCCTAT
390 T-TCCGAT
*
117933765 TTCCTATATTGGTAGGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 TTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
*
117933829 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGGTAGCAGATCCT
66 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATCCT
* *
117933894 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTCCCCATATTGGTGGCGAA
131 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTCCCCATACTGGTGGCGAA
117933959 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTC
196 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTC
* * * *
117934024 CTATCTTCCTATATTGATAGGAAGTAGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
261 CTATCTTCCTATATTGATAGGAAGTAGATCCAAGACGCAAATCTTATCTTCCCATACTGGTGGCG
* *
117934089 AAGTAGATCACATAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGT
326 AAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCAAAGATAACAGT
* *
117934154 TTCGGT
391 TCCGAT
*
117934160 TTCCTATACTGGTAGGAAGTGGAT
1 TTCCTATATTGGTAGGAAGTGGAT
117934184 TGAAAAACAG
Statistics
Matches: 386, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
395 360 0.93
396 13 0.03
397 13 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (396 bp):
TTCCTATATTGGTAGGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATCCT
ATCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTCCCCATACTGGTGGCGAA
GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTC
CTATCTTCCTATATTGATAGGAAGTAGATCCAAGACGCAAATCTTATCTTCCCATACTGGTGGCG
AAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCAAAGATAACAGT
TCCGAT
Found at i:117934417 original size:134 final size:134
Alignment explanation
Indices: 117934229--117934473 Score: 400
Period size: 134 Copynumber: 1.8 Consensus size: 134
117934219 AGAATAGATT
* * * *
117934229 GCAGGTCGAAGACGGCAGACTTTCCCTCCCTAACTACAGTGGAGTACGTTGAAGCCGATAACTCT
1 GCAGGTCAAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAATACATTGAAGCCGATAACTCT
*
117934294 ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAA
66 ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAA
117934359 CGAA
131 CGAA
* * * *
117934363 GCAGGTCAAAGATGTCAGATTTTACCTCCCTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 GCAGGTCAAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAATACATTGAAGCCGATAACTCT
*
117934428 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTT
66 ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTACAGATCTT
117934474 ATCTCCCTAA
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
134 101 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (134 bp):
GCAGGTCAAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAATACATTGAAGCCGATAACTCT
ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAA
CGAA
Found at i:117934653 original size:40 final size:40
Alignment explanation
Indices: 117934599--117934750 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
117934589 AAGATTACAA
* *
117934599 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
** *
117934639 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
* *
117934680 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
117934721 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
117934751 CTAAAAACAC
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 58 0.61
41 4 0.04
42 31 0.33
43 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:117934692 original size:82 final size:83
Alignment explanation
Indices: 117934597--117934766 Score: 270
Period size: 82 Copynumber: 2.1 Consensus size: 83
117934587 CGAAGATTAC
* * *
117934597 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
117934662 GAGCAGAC-AAAACCACA
66 GAGCAGACTAAAAACACA
* * *
117934679 GATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
117934744 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
117934762 AATCT
1 AATCT
117934767 CATCCCCATG
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 67 0.85
83 12 0.15
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:117934703 original size:42 final size:42
Alignment explanation
Indices: 117934598--117934766 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 42
117934588 GAAGATTACA
* ** **
117934598 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
*
117934639 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
* * ** *
117934680 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
* *
117934721 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAAACACAG
117934763 ATCT
1 ATCT
117934767 CATCCCCATG
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 58 0.56
41 7 0.07
42 32 0.31
43 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
Found at i:117936180 original size:23 final size:22
Alignment explanation
Indices: 117936148--117936196 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
117936138 ATTCATTCAA
*
117936148 TTTTTTTATTTTTTATTATTAT
1 TTTTTTTATTTATTATTATTAT
117936170 TTTTATTTATTTATTATTATT-T
1 TTTT-TTTATTTATTATTATTAT
117936192 TTTTT
1 TTTTT
117936197 CCTCTTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 15 0.60
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTTTTATTTATTATTATTAT
Found at i:117936182 original size:20 final size:19
Alignment explanation
Indices: 117936150--117936193 Score: 79
Period size: 20 Copynumber: 2.3 Consensus size: 19
117936140 TCATTCAATT
117936150 TTTTTATTTTTTATTATTA
1 TTTTTATTTTTTATTATTA
117936169 TTTTTATTTATTTATTATTA
1 TTTTTATTT-TTTATTATTA
117936189 TTTTT
1 TTTTT
117936194 TTTCCTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTATTTTTTATTATTA
Found at i:117936382 original size:3 final size:3
Alignment explanation
Indices: 117936376--117936409 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
117936366 TACTACGCGG
117936376 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
117936410 TCTTATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:117937939 original size:37 final size:37
Alignment explanation
Indices: 117937878--117938097 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
117937868 TACGTATGAT
* *
117937878 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
117937913 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
117937950 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
117937987 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
117938024 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
117938061 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
117938098 TAAAGCTATC
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.05
36 3 0.02
37 163 0.93
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:117938140 original size:52 final size:52
Alignment explanation
Indices: 117938061--117938426 Score: 459
Period size: 52 Copynumber: 7.2 Consensus size: 52
117938051 TAAGTGTAGC
* * **
117938061 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
117938114 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
117938166 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
117938212 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
117938264 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
117938310 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
117938362 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
117938414 CACTTTGTCACTT
1 CACTTT-TCACTT
117938427 CATCAGAAGT
Statistics
Matches: 275, Mismatches: 25, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
46 83 0.30
49 1 0.00
52 176 0.64
53 15 0.05
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:117938202 original size:98 final size:98
Alignment explanation
Indices: 117938061--117938419 Score: 511
Period size: 98 Copynumber: 3.6 Consensus size: 98
117938051 TAAGTGTAGC
* * * * *
117938061 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
117938126 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
117938159 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
** *
117938224 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
117938257 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
*
117938322 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * * *
117938355 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
117938420 GTCACTTCAT
Statistics
Matches: 235, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
98 191 0.81
100 1 0.00
104 43 0.18
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:117938236 original size:150 final size:152
Alignment explanation
Indices: 117938068--117938426 Score: 572
Period size: 150 Copynumber: 2.4 Consensus size: 152
117938058 AGCCACTTAT
* *
117938068 CACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGTCACTT
1 CACT-TGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTTCACTTGTCACTT
*
117938133 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC-T-TTGTCACTTGATCAGATAAGTATAGC
65 GATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTCTTGTCACTTGATCAGATAAGTATAGC
117938196 CGAAGCTATTACTTATCACTTTC
130 CGAAGCTATTACTTATCACTTTC
117938219 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTGTCACTTG
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTTCACTTGTCACTTG
*
117938278 ATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTATCAC-TT---CTTGTCACTTGATCAGATAAGTAT
117938343 AGCCGAAGCTATTACTTATCACTTTC
127 AGCCGAAGCTATTACTTATCACTTTC
117938369 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT-TCACTT
117938427 CATCAGAAGT
Statistics
Matches: 191, Mismatches: 4, Indels: 20
0.89 0.02 0.09
Matches are distributed among these distances:
144 43 0.23
146 1 0.01
147 1 0.01
150 139 0.73
151 4 0.02
154 1 0.01
157 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (152 bp):
CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTTCACTTGTCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTCTTGTCACTTGATCAGATAAGTATAGCC
GAAGCTATTACTTATCACTTTC
Found at i:117941829 original size:130 final size:131
Alignment explanation
Indices: 117941595--117941858 Score: 381
Period size: 130 Copynumber: 2.0 Consensus size: 131
117941585 TAACTATTCA
* *
117941595 TTTAAAAATTCTTTAAAACGAAGGCAATACTTGATGTTTGGCAATTCAGAAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGCAATACTTGATGTTTGGCAATTCAGAAATCGTGCCCGATCG
*
117941660 TGCTGGATTGAGATTTCCTGTTTGTTCAAAACAAACGAATATTC-CTTTGGAATTTCACTCATG-
66 TGCTGGATTGAGATTTCCTGTTTGTTCAAAACAAACGAATATTCTC-TTAGAATTTCACTCATGT
117941723 TC
130 TC
* * * * *
117941725 TTTAAAAATTCTTCAAAACGAAGGTAAT-GTTCGATGTTTGGCAATTCGGGAATCGTGCTCGATC
1 TTTAAAAATTCTTCAAAACGAAGGCAATACTT-GATGTTTGGCAATTCAGAAATCGTGCCCGATC
* * * *
117941789 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCTCTTAGAATTTCACTCATGT
65 GTGCTGGATTGAGATTTCCTGTTTGTTCAAAACAAACGAATATTCTCTTAGAATTTCACTCATGT
117941854 TC
130 TC
117941856 TTT
1 TTT
117941859 GAATTCTAAA
Statistics
Matches: 119, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
129 2 0.02
130 111 0.93
131 6 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (131 bp):
TTTAAAAATTCTTCAAAACGAAGGCAATACTTGATGTTTGGCAATTCAGAAATCGTGCCCGATCG
TGCTGGATTGAGATTTCCTGTTTGTTCAAAACAAACGAATATTCTCTTAGAATTTCACTCATGTT
C
Found at i:117950405 original size:27 final size:26
Alignment explanation
Indices: 117950361--117950410 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
117950351 CATAAAAGTA
117950361 AGAAAAAATGTTTTAAAAATTAAATT
1 AGAAAAAATGTTTTAAAAATTAAATT
117950387 AGAAAAAATGTTTTAAAAATTAAA
1 AGAAAAAATGTTTTAAAAATTAAA
117950411 GCTTTTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (26 bp):
AGAAAAAATGTTTTAAAAATTAAATT
Found at i:117957882 original size:22 final size:24
Alignment explanation
Indices: 117957852--117957896 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
117957842 GTTTTTTTAA
117957852 TATTATTTA-ACAATATTT-TAAAG
1 TATTATTTATA-AATATTTCTAAAG
117957875 TATT-TTTATAAATATTTCTAAA
1 TATTATTTATAAATATTTCTAAA
117957897 AACTAATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
TATTATTTATAAATATTTCTAAAG
Found at i:117960938 original size:13 final size:13
Alignment explanation
Indices: 117960904--117960931 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
117960894 AATAATCAAC
117960904 TAATGATATTTGA
1 TAATGATATTTGA
117960917 TAATGATATTTGA
1 TAATGATATTTGA
117960930 TA
1 TA
117960932 CCTATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (13 bp):
TAATGATATTTGA
Found at i:117967771 original size:21 final size:19
Alignment explanation
Indices: 117967692--117967773 Score: 69
Period size: 19 Copynumber: 4.1 Consensus size: 19
117967682 AATAGCAAAA
117967692 ATTTTCTATAA-ATTTTTAAT
1 ATTTT-TATAATA-TTTTAAT
* * *
117967712 ACTTTTATAACAATTTAAT
1 ATTTTTATAATATTTTAAT
117967731 ATTTTTATAATATTTATAAT
1 ATTTTTATAATATTT-TAAT
117967751 ATTCATTT-TAATACTTTTAAT
1 ATT--TTTATAATA-TTTTAAT
117967772 AT
1 AT
117967774 AAATACCTAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
19 23 0.44
20 12 0.23
21 11 0.21
22 6 0.12
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTTATAATATTTTAAT
Found at i:117967890 original size:30 final size:29
Alignment explanation
Indices: 117967849--117967915 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 29
117967839 ATTCTTTCTT
* **
117967849 ATTTTTCATAATATATTAATGGTTTTTATA
1 ATTTTTAATAATATATTAAT-CATTTTATA
*
117967879 ATTTTTAATAATATTTTAATCATTTTATA
1 ATTTTTAATAATATATTAATCATTTTATA
*
117967908 ATTATTAA
1 ATTTTTAA
117967916 AAATTTTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (29 bp):
ATTTTTAATAATATATTAATCATTTTATA
Found at i:117967905 original size:29 final size:28
Alignment explanation
Indices: 117967849--117967932 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
117967839 ATTCTTTCTT
* * *
117967849 ATTTTTCATAATATATTAATGGTTTTTATA
1 ATTTTTAATAATATTTTAAT--ATTTTATA
117967879 ATTTTTAATAATATTTTAATCATTTTATA
1 ATTTTTAATAATATTTTAAT-ATTTTATA
* *
117967908 ATTATTAAAAAT-TTTATAATATTTT
1 ATTTTTAATAATATTT-TAATATTTT
117967933 TCTACAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.17
29 21 0.45
30 18 0.38
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
ATTTTTAATAATATTTTAATATTTTATA
Found at i:117967963 original size:19 final size:19
Alignment explanation
Indices: 117967916--117967964 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
117967906 TAATTATTAA
* *
117967916 AAATTTTATAATATTTTTCT
1 AAATTTT-TTATAGTTTTCT
117967936 ACAA-TTTTTATAGTTTTCT
1 A-AATTTTTTATAGTTTTCT
117967955 AAATTTTTTA
1 AAATTTTTTA
117967965 ATCATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 17 0.68
20 4 0.16
21 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (19 bp):
AAATTTTTTATAGTTTTCT
Found at i:117969001 original size:18 final size:17
Alignment explanation
Indices: 117968979--117969024 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
117968969 CACTATTAAA
117968979 ATATTAAAATATTAATTT
1 ATATTAAAATATT-ATTT
* *
117968997 TTATTATAATATTATTT
1 ATATTAAAATATTATTT
*
117969014 ATATTGAAATA
1 ATATTAAAATA
117969025 ATTGTTATTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATTAAAATATTATTT
Found at i:117969296 original size:35 final size:35
Alignment explanation
Indices: 117969247--117969318 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
117969237 TATCATTACG
*
117969247 ATAGATTTTGTTACTTGCCATATTTGAAATTGACA
1 ATAGATTTTATTACTTGCCATATTTGAAATTGACA
117969282 ATAGATTTTATTACTTGCCATATTTGAAATTGACA
1 ATAGATTTTATTACTTGCCATATTTGAAATTGACA
117969317 AT
1 AT
117969319 TTTTGAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.43
Consensus pattern (35 bp):
ATAGATTTTATTACTTGCCATATTTGAAATTGACA
Found at i:117971534 original size:86 final size:87
Alignment explanation
Indices: 117971384--117971551 Score: 286
Period size: 86 Copynumber: 1.9 Consensus size: 87
117971374 GTATGTTGGG
* * *
117971384 TATACGACTTTTGTAGTATGTAGCATCATTCACAATAGTGTAATTCATAGCTAAACTAATGGGTA
1 TATACGACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
117971449 AATGAT-ATCTTCTCATTGATAT
66 AATGATAAT-TTCTCATTGATAT
117971471 TATA-GACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
1 TATACGACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
117971535 AATGATAATTTCTCATT
66 AATGATAATTTCTCATT
117971552 AACATTACAT
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
86 71 0.92
87 6 0.08
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (87 bp):
TATACGACTTCTGTAATATGTAGCATCATTCACAATAGTGAAATTCATAGCTAAACTAATGGGTA
AATGATAATTTCTCATTGATAT
Found at i:117973621 original size:21 final size:21
Alignment explanation
Indices: 117973596--117973645 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
117973586 AGAGTTTAGA
117973596 TAAATTAATTAAATTA-AAAT
1 TAAATTAATTAAATTAGAAAT
* *
117973616 TAAAATTAATTGAATTAGCAAT
1 T-AAATTAATTAAATTAGAAAT
117973638 TAAATTAA
1 TAAATTAA
117973646 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.81
22 4 0.15
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (21 bp):
TAAATTAATTAAATTAGAAAT
Found at i:117974471 original size:24 final size:23
Alignment explanation
Indices: 117974444--117974503 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
117974434 AATTAATTTT
*
117974444 TATATAATTTTTTAAATTTTTATA
1 TATATAATTTTTTAAA-TTTCATA
*
117974468 TATATATTTTTTTAAATTTCATA
1 TATATAATTTTTTAAATTTCATA
*
117974491 AATTATAATTTTT
1 TA-TATAATTTTT
117974504 ATTTACAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 7 0.23
24 24 0.77
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
TATATAATTTTTTAAATTTCATA
Found at i:117979544 original size:19 final size:21
Alignment explanation
Indices: 117979498--117979544 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
117979488 TATAATAACT
*
117979498 TAATTTAATATCATATATTAC
1 TAATTAAATATCATATATTAC
117979519 TAA-TAAATAT-ATATATTA-
1 TAATTAAATATCATATATTAC
117979537 TAATTAAA
1 TAATTAAA
117979545 ATCTAAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.12
19 12 0.50
20 6 0.25
21 3 0.12
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATTAAATATCATATATTAC
Found at i:117980036 original size:17 final size:17
Alignment explanation
Indices: 117980014--117980068 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
117980004 GAGTAAGCAT
117980014 TTCAAATGCTTAGTAAG
1 TTCAAATGCTTAGTAAG
117980031 TTCAAAACTGC--A-TAAG
1 TTC-AAA-TGCTTAGTAAG
117980047 ATTTCAAATGCTTAGTAAG
1 --TTCAAATGCTTAGTAAG
117980066 TTC
1 TTC
117980069 GTATAACAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
16 7 0.23
17 10 0.32
18 7 0.23
19 7 0.23
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (17 bp):
TTCAAATGCTTAGTAAG
Found at i:117980053 original size:35 final size:36
Alignment explanation
Indices: 117979998--117980068 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
117979988 CAGAGAAAAG
117979998 AAAACTGAGTAAGCATTTCAAATGCTTAGTAAGTTC
1 AAAACTGAGTAAGCATTTCAAATGCTTAGTAAGTTC
117980034 AAAACTGCA-TAAG-ATTTCAAATGCTTAGTAAGTTC
1 AAAACTG-AGTAAGCATTTCAAATGCTTAGTAAGTTC
117980069 GTATAACAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 22 0.65
36 11 0.32
37 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (36 bp):
AAAACTGAGTAAGCATTTCAAATGCTTAGTAAGTTC
Found at i:117980562 original size:24 final size:25
Alignment explanation
Indices: 117980530--117980576 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
117980520 CTTATAGGAG
*
117980530 CCATAATCGGGAAGTTCACAAAGAA
1 CCATAATCGGGAAGCTCACAAAGAA
117980555 CCAT-ATCGGGAAGCTCACAAAG
1 CCATAATCGGGAAGCTCACAAAG
117980577 CGTCATGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.15
Consensus pattern (25 bp):
CCATAATCGGGAAGCTCACAAAGAA
Found at i:117982611 original size:15 final size:15
Alignment explanation
Indices: 117982591--117982644 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
117982581 ATACTACAAA
117982591 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
117982606 ATATTTATAATTATAATT
1 ATATTTATTA-T-TAA-T
*
117982624 AATATTTATTATTAAA
1 -ATATTTATTATTAAT
117982640 ATATT
1 ATATT
117982645 AATATTGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 6 0.19
18 2 0.06
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:117982707 original size:16 final size:16
Alignment explanation
Indices: 117982676--117982712 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
117982666 ATGTGAATAA
117982676 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
117982692 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
117982708 TATTA
1 TATTA
117982713 AAATAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:117988968 original size:13 final size:13
Alignment explanation
Indices: 117988950--117988976 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
117988940 CCACCTTAGA
117988950 AATCCAACCATAT
1 AATCCAACCATAT
117988963 AATCCAACCATAT
1 AATCCAACCATAT
117988976 A
1 A
117988977 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:117989857 original size:16 final size:16
Alignment explanation
Indices: 117989836--117989881 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
117989826 TTATTAAATT
117989836 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
117989852 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
117989867 AT-TATTTTAAATTAT
1 ATATATTTT-AATTAT
117989882 CTATATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 2 0.08
15 14 0.54
16 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:117989891 original size:107 final size:108
Alignment explanation
Indices: 117989776--117989986 Score: 379
Period size: 107 Copynumber: 2.0 Consensus size: 108
117989766 TATAGTATTA
* * *
117989776 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
117989841 TTTTAATTATAATATATTTAATAATAATTAT-TTTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
117989883 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
*
117989948 TTTTAATTATAATATATTTAATAATAATTTTGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
117989987 ATGATTAAAT
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
107 92 0.93
108 7 0.07
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:117989969 original size:15 final size:15
Alignment explanation
Indices: 117989934--117989975 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
117989924 TTAAAAATTT
*
117989934 TATTAAATTAT-ATA
1 TATTTAATTATAATA
117989948 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
117989962 TATTTAATAATAAT
1 TATTTAATTATAAT
117989976 TTTGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:117990210 original size:45 final size:43
Alignment explanation
Indices: 117990110--117990219 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 43
117990100 TTTTCCATTA
117990110 TGCTATTACACCTCTATT-C---CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACATAAGAT
* * *
117990149 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACA-TAAGA-T
117990194 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
117990220 CCTCCAATCC
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 24 0.41
46 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACATAAGAT
Found at i:117990221 original size:16 final size:16
Alignment explanation
Indices: 117990200--117990248 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
117990190 GATTTGCTAT
*
117990200 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
117990216 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
117990232 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
117990248 T
1 T
117990249 TCAACGAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:118001022 original size:29 final size:29
Alignment explanation
Indices: 118000973--118001046 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
118000963 ATATACATGT
* *
118000973 AATAATTTTAATAATTTTATATTTTAAAAA
1 AATAATTATAATAATTATATATTTT-AAAA
118001003 AATAA-TATAATAATTATATATTTTAAAA
1 AATAATTATAATAATTATATATTTTAAAA
*
118001031 AATAATTTTAATAATT
1 AATAATTATAATAATT
118001047 TTAAAATCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.22
29 26 0.65
30 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
AATAATTATAATAATTATATATTTTAAAA
Found at i:118001036 original size:20 final size:22
Alignment explanation
Indices: 118001011--118001052 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
118001001 AAAATAATAT
118001011 AATAATTAT-AT-ATTTTAAAA
1 AATAATTATAATAATTTTAAAA
*
118001031 AATAATTTTAATAATTTTAAAA
1 AATAATTATAATAATTTTAAAA
118001053 TCATTTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 2 0.11
22 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATAATTATAATAATTTTAAAA
Found at i:118001544 original size:8 final size:8
Alignment explanation
Indices: 118001516--118001549 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
118001506 AATTAAAACT
118001516 TAAAATAA
1 TAAAATAA
*
118001524 TACAATCAA
1 TAAAAT-AA
118001533 TAAAATAA
1 TAAAATAA
118001541 TAAAATAA
1 TAAAATAA
118001549 T
1 T
118001550 TGTTTTGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (8 bp):
TAAAATAA
Found at i:118004575 original size:20 final size:20
Alignment explanation
Indices: 118004552--118004591 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
118004542 TTTATTATTA
*
118004552 TTATTATTA-TTTCATTTGTT
1 TTATT-TTACTTTCAATTGTT
118004572 TTATTTTACTTTCAATTGTT
1 TTATTTTACTTTCAATTGTT
118004592 AACTAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (20 bp):
TTATTTTACTTTCAATTGTT
Found at i:118004791 original size:26 final size:27
Alignment explanation
Indices: 118004731--118004791 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
118004721 TTTCAAAAAA
* *
118004731 TTTATATTATTATTATTATTATTTTGT
1 TTTATTTTAATATTATTATTATTTTGT
*
118004758 TTTA-TTTAATATTTTTATT-TTCTT-T
1 TTTATTTTAATATTATTATTATT-TTGT
118004783 TTTATTTTA
1 TTTATTTTA
118004792 CAATTAGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 7 0.24
26 18 0.62
27 4 0.14
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (27 bp):
TTTATTTTAATATTATTATTATTTTGT
Found at i:118006585 original size:66 final size:67
Alignment explanation
Indices: 118006504--118006637 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 67
118006494 AGTCCTTTTC
*
118006504 AGAGAGCACACTCTCGCAAACC-CTATTTCTTACAGCAGAATTAGCAGTCC-AGCTAAATCCCCT
1 AGAGAGCACACTCTCGCAAACCTC-ATTTCTTACAGCAGAATTAGCAGTCCAAGCTAAATCCCAT
118006567 GTA
65 GTA
* * * **
118006570 AGAGAGCACACTCTCGCGAACCTCATTTCTTACAGCGGGATTATTAGTCCAAGCTAAATCCCATG
1 AGAGAGCACACTCTCGCAAACCTCATTTCTTACAGCAGAATTAGCAGTCCAAGCTAAATCCCATG
118006635 TA
66 TA
118006637 A
1 A
118006638 TGACAAATAC
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
66 43 0.72
67 17 0.28
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (67 bp):
AGAGAGCACACTCTCGCAAACCTCATTTCTTACAGCAGAATTAGCAGTCCAAGCTAAATCCCATG
TA
Found at i:118006815 original size:58 final size:58
Alignment explanation
Indices: 118006706--118006849 Score: 171
Period size: 58 Copynumber: 2.5 Consensus size: 58
118006696 CATTTACTTT
* * * * * * * * *
118006706 GGATTACCCGTCCGGGATAAATCCATTTCGCACATATTTTTTGGGAGGGCTTATATTA
1 GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTTAGGAAGGCTTATATCA
*
118006764 GGATCACCCATCCGGGCTAGATCCTTTTCACACATATTCTTTAGGAAGGCTTATATCA
1 GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTTAGGAAGGCTTATATCA
* * *
118006822 GGATCACTCGTTCGAGCTAGATCCTTTT
1 GGATCACCCGTCCGGGCTAGATCCTTTT
118006850 TACTGTCAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (58 bp):
GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTTAGGAAGGCTTATATCA
Found at i:118009330 original size:20 final size:19
Alignment explanation
Indices: 118009295--118009357 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
118009285 CAAAAAAATC
* *
118009295 AAAATATTTTTCAAAAGTTT
1 AAAATATTTAT-AAAAATTT
118009315 AAAATATTTATAAAAATTT
1 AAAATATTTATAAAAATTT
*
118009334 CAAAA-ATTTAAAAAAAATTT
1 -AAAATATTT-ATAAAAATTT
118009354 AAAA
1 AAAA
118009358 ATTCTAAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
19 15 0.39
20 23 0.61
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATATTTATAAAAATTT
Found at i:118009348 original size:19 final size:18
Alignment explanation
Indices: 118009307--118009365 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
118009297 AATATTTTTC
* *
118009307 AAAAGTTTAAAATATTTAT
1 AAAAATTTAAAA-ATTTAA
118009326 AAAAATTTCAAAAATTTAAA
1 AAAAATTT-AAAAATTT-AA
118009346 AAAAATTTAAAAATTCTAA
1 AAAAATTTAAAAATT-TAA
118009365 A
1 A
118009366 GAATATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATTTAAAAATTTAA
Found at i:118009356 original size:28 final size:28
Alignment explanation
Indices: 118009303--118009394 Score: 73
Period size: 28 Copynumber: 3.3 Consensus size: 28
118009293 TCAAAATATT
* * *
118009303 TTTCAAAAGTTT-AAAATATTTATAAAAA
1 TTTCAAAAATTTAAAAAAAATT-TAAAAA
118009331 TTTCAAAAATTTAAAAAAAATTTAAAAA
1 TTTCAAAAATTTAAAAAAAATTTAAAAA
* * *
118009359 -TTCTAAAGAATATATAAAAAAGTT-AAAA
1 TTTC-AAA-AATTTAAAAAAAATTTAAAAA
*
118009387 TTTTAAAA
1 TTTCAAAA
118009395 TTTTTCTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
27 4 0.08
28 27 0.51
29 22 0.42
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (28 bp):
TTTCAAAAATTTAAAAAAAATTTAAAAA
Found at i:118009358 original size:20 final size:20
Alignment explanation
Indices: 118009307--118009386 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
118009297 AATATTTTTC
* * *
118009307 AAAAGTTTAAAATATTT-AT
1 AAAAATTTAAAAAATTTAAA
*
118009326 AAAAATTTCAAAAATTTAAA
1 AAAAATTTAAAAAATTTAAA
118009346 AAAAATTT-AAAAATTCTAAA
1 AAAAATTTAAAAAATT-TAAA
* * * *
118009366 GAATATATAAAAAAGTTAAA
1 AAAAATTTAAAAAATTTAAA
118009386 A
1 A
118009387 TTTTAAAATT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
19 21 0.43
20 22 0.45
21 6 0.12
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAATTTAAAAAATTTAAA
Found at i:118018267 original size:34 final size:34
Alignment explanation
Indices: 118018224--118018292 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
118018214 CAAGTTTTAG
118018224 ATTTAATTTGTGGATGAAAGGTGAGAACAAGAGA
1 ATTTAATTTGTGGATGAAAGGTGAGAACAAGAGA
118018258 ATTTAATTTGTGGATGAAAGGTGAGAACAAGAGA
1 ATTTAATTTGTGGATGAAAGGTGAGAACAAGAGA
118018292 A
1 A
118018293 ATTAGTGAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.03, G:0.29, T:0.26
Consensus pattern (34 bp):
ATTTAATTTGTGGATGAAAGGTGAGAACAAGAGA
Found at i:118022370 original size:39 final size:39
Alignment explanation
Indices: 118022288--118022379 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
118022278 AAATATAACC
* *
118022288 AAAAATAAATAAAATTTAAAAATACTTAAATCAATAATT
1 AAAAATAAATAAAATTGAAAAATACATAAATCAATAATT
*
118022327 AAAAATAAA-AAAATTGATAAAATTCAT-AATCACA-AATT
1 AAAAATAAATAAAATTGA-AAAATACATAAATCA-ATAATT
118022365 AAAAA-AAACTAAAAT
1 AAAAATAAA-TAAAAT
118022380 CAACCGTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
37 3 0.07
38 21 0.46
39 22 0.48
ACGTcount: A:0.66, C:0.07, G:0.01, T:0.26
Consensus pattern (39 bp):
AAAAATAAATAAAATTGAAAAATACATAAATCAATAATT
Found at i:118025962 original size:18 final size:18
Alignment explanation
Indices: 118025939--118025973 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
118025929 AGGGTTTCTT
118025939 GGTTTTTTTTTGGGGTTA
1 GGTTTTTTTTTGGGGTTA
118025957 GGTTTTTTTTTGGGGTT
1 GGTTTTTTTTTGGGGTT
118025974 TAATGGACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.03, C:0.00, G:0.34, T:0.63
Consensus pattern (18 bp):
GGTTTTTTTTTGGGGTTA
Found at i:118026726 original size:90 final size:90
Alignment explanation
Indices: 118026620--118026785 Score: 228
Period size: 90 Copynumber: 1.8 Consensus size: 90
118026610 AATAGACAAT
* *
118026620 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAAACAC-CTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTC-AACACGCTCTCGCAATACGA
118026683 GTCGATTTTTTTGAAAGGCAAAAATTG
64 GTCGATTTTTTTGAAAGGCAAAAATTG
* * * *
118026710 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACACG-CTCTCGCAATACGAG
*
118026775 TTGATTTTTTT
65 TCGATTTTTTT
118026786 TATAACAGAA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
89 6 0.09
90 36 0.55
91 24 0.36
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (90 bp):
AAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACACGCTCTCGCAATACGAGT
CGATTTTTTTGAAAGGCAAAAATTG
Found at i:118026838 original size:74 final size:75
Alignment explanation
Indices: 118026713--118027913 Score: 256
Period size: 74 Copynumber: 15.2 Consensus size: 75
118026703 AAAATTGAAA
* * ** *
118026713 AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTG
1 AACAGAAATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTA
*
118026778 ATTTTTTTTAT
65 AATTTTTTTAT
* *
118026789 AACAGAAATTGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
1 AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
*
118026853 ATTTTTTTGAAA
66 ATTTTTTT--AT
* * * * ** * * * * * * * *
118026865 AATATAAATTTAAAAGCAGAAAT-TGAAAT-TAACTCAACGTGCCTTGAGGCTCAACT-TAC-CT
1 AACAGAAA-TTGAAA--ATACCTCAG-CATGTACCT-GA-G-G-C-TCA-ACTCACCTCT-CGCA
* * * *
118026926 CT-CGCAGTATGAGTTGATTTTTTGAA
55 ATACG-AGT-T-A---AATTTTTTTAT
* ** *
118026952 AGACA-AATATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-ACAGAA-ATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
** *
118027015 GATTTTTTTTTAC
64 -AAATTTTTTTAT
* * * * *
118027028 AACAGAAATTGAAATTACCTCAGCGTGT-CCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
*
118027092 ATTTTTTTGAAA
66 ATTTTTTT--AT
* * ** ** * * *
118027104 AATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTG
1 AACAGAAATT-----G-A-AAA-T--ACCT-CAGC-ATGTACC-TGAGGCTCAACTCACCTCTCG
* * * *
118027169 CAATATGAGTT-GATTTTTTGAA
53 CAATACGAGTTAAATTTTTTTAT
* * ** * *
118027191 AGACAAAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTAGCAATATGAGTT-
1 A-ACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTA
* *
118027254 GATTTTTTTGAC
65 AATTTTTTT-AT
* * * * * *
118027266 AACAGAAATTGAAATTACCTCAGCGTGT-CTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
*
118027330 ATTTTTTTGAA
66 ATTTTTTT-AT
* * ** ** * *
118027341 AATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCG
1 AACAGAAATT-----G-A-AAA-T--ACCT-CAGC-ATGTACC-TGAGGCTCAACTCACCTCTCG
* * * *
118027406 CAATATGAGTT-GA-TTTTTGACA
53 CAATACGAGTTAAATTTTTTTA-T
* * ** * * *
118027428 AACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCATTTCTCGTAATATGAGTT-G
1 AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
**
118027491 ATTTTTGAAAAAT
66 ATTTTT---TTAT
** *** * * * * * * *
118027504 AGATTGAAACACAAAAATTGACAATACATCAGCGTGCCT-CGAG-GCTCAACTCACCTCTCGCAA
1 A-ACAGAAA-TTGAAAA-T-AC-CT-CAGCA-TGTACCTGAG-GCTC-AA-CTCACCTCTCGCAA
* * ** *
118027567 TATGAGTT-GATTTTTGAAA
56 TACGAGTTAAATTTTTTTAT
*
118027586 AACAGAAATTGAAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATACGAGTT-A
1 AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
*
118027649 ATTTTTGAAAAACATAAATT
66 ATTTTT--------T-TA-T
* * * * * ** *
118027669 GAACAGAAATTGAAACTACCTTAACGTGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 -AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT-
** *
118027733 ATTTTTTTTTGAA
64 AAATTTTTTT-AT
* * ** *
118027746 AGACAAAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 A-ACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT-
** *
118027810 ATTTTTTTTTTTAC
64 A--AATTTTTTTAT
* * *
118027824 AACAGAAATTGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
*
118027888 ATTTTTTTGAA
66 ATTTTTTT-AT
* *
118027899 AATATAAATTGAAAA
1 AACAGAAATTGAAAA
118027914 GCAGAAATTG
Statistics
Matches: 843, Mismatches: 185, Indels: 195
0.69 0.15 0.16
Matches are distributed among these distances:
73 58 0.07
74 155 0.18
75 92 0.11
76 61 0.07
77 130 0.15
78 13 0.02
79 27 0.03
80 19 0.02
81 15 0.02
82 15 0.02
83 11 0.01
84 70 0.08
85 42 0.05
86 13 0.02
87 31 0.04
88 14 0.02
89 47 0.06
90 30 0.04
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (75 bp):
AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTAA
ATTTTTTTAT
Found at i:118026874 original size:76 final size:76
Alignment explanation
Indices: 118026707--118028386 Score: 555
Period size: 75 Copynumber: 21.2 Consensus size: 76
118026697 AAGGCAAAAA
* * **
118026707 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCACCTCTCGCAATAC
*
118026772 GAGTTGATTTTT
65 GAGTTAATTTTT
* * * *
118026784 TT-TATAACAGAAATTGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
118026847 AGTTAAATTTTT
66 AGTT-AATTTTT
* * * * ** * * * * * * *
118026859 TTGAAAAATATAAATTTAAAAGCAGAAAT-TGAAAT-TAACTCAACGTGCCTTGAGGCTCAACT-
1 TTGAAAAACAGAAA-TTGAAA--ATACCTCAG-CATGTACCT-GA-G-G-C-TCA-ACTCACCTC
** *
118026921 TAC-CTCT-CGCAGTATGAGTTGATTTT
56 T-CGCAATACG-AGT-T-A-AT--TTTT
* * ** *
118026947 TTGAAAGACA-AATATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATAT
1 TTGAAAAACAGAA-ATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATAC
*
118027010 GAGTTGATTTTT
65 GAGTTAATTTTT
** * * * * *
118027022 TTTTACAACAGAAATTGAAATTACCTCAGCGTGT-CCTAAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
118027086 AGTTGAATTTTT
66 AGTT-AATTTTT
* * ** ** * *
118027098 TTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCAC
1 TTGAAAAACAGAAATT-----G-A-AAA-T--ACCT-CAGC-ATGTACC-TGAGGCTCAACTCAC
* * *
118027163 CTCTTGCAATATGAGTTGA-TTTT
53 CTCTCGCAATACGAGTTAATTTTT
* * * ** * *
118027186 TTGAAAGACAAAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTAGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
*
118027250 AGTTGATTTTT
66 AGTTAATTTTT
* * * * * *
118027261 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGT-CTTGAAGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
118027324 AGTTGAATTTTT
66 AGTT-AATTTTT
* * ** ** * *
118027336 TTGAAAATATAAATTGAAA-AGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCAC
1 TTG-AAA-A-ACA--GAAATTG-A-AAA-T--ACCT-CAGC-ATGTACC-TGAGGCTCAACTCAC
* *
118027400 CTCTCGCAATATGAGTTGA--TTT
53 CTCTCGCAATACGAGTTAATTTTT
* * * ** * *
118027422 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCATTTCTCGTAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
*
118027486 AGTTGA--TTT
66 AGTTAATTTTT
* *** * * * * * * *
118027495 TTGAAAAATAGATTGAAACACAAAAATTGACAATACATCAGCGTGCCT-CGAG-GCTCAACTCAC
1 TTG-AAAA-ACA--GAAA-TTGAAAA-T-AC-CT-CAGCA-TGTACCTGAG-GCTC-AA-CTCAC
* *
118027558 CTCTCGCAATATGAGTTGA--TTT
53 CTCTCGCAATACGAGTTAATTTTT
*
118027580 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATACG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
118027644 AGTTAATTTTT
66 AGTTAATTTTT
* * * * * * **
118027655 GAAAAACAT-AAATTGAACAGAAATTGAAACTACCTTAACGTGT-CTTGAGGCTCAACTCATTTC
1 -------TTGAAA---AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTC
* *
118027718 TCGCAATATGAGTTGATTTTTTT
56 TCGCAATACGAGTT-A-ATTTTT
* * * ** *
118027741 TTGAAAGACAAAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
*
118027805 AGTTGATTTTTTT
66 AGTT-A-ATTTTT
** * * *
118027818 TTTTACAACAGAAATTGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
118027882 AGTTGAATTTTT
66 AGTT-AATTTTT
* * ** ** * *
118027894 TTGAAAATATAAATTGAAA-AGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCAC
1 TTG-AAA-A-ACA--GAAATTG-A-AAA-T--ACCT-CAGC-ATGTACC-TGAGGCTCAACTCAC
* *
118027958 CTCTCGCAATATGAGTTGA--TTT
53 CTCTCGCAATACGAGTTAATTTTT
* * * ** * *
118027980 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCATTTCTCGTAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
*
118028044 AGTTGATTTTT
66 AGTTAATTTTT
* *** * ** * * *
118028055 TTGAAAAATAGATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT
1 TTG-AAAA-ACA--GAAA-TTGAAAA-T-AC-CT-CAGCA-TGT-ACCTGAGGCTCAACTCACCT
* *
118028120 CTCGCAATATGAGTTGA--TTT
55 CTCGCAATACGAGTTAATTTTT
* * *
118028140 TTGAAAAACAGAAATTGAAAATATCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
*
118028204 AGTTGATTTTT
66 AGTTAATTTTT
* * * * * * **
118028215 GAAAAACAT-AAATTGAACAGAAATTGAAACTACCTCAACGTGT-CTTGAGACTCAACTCATTTC
1 -------TTGAAA---AACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTC
* *
118028278 TCGCAATATGAGTTGATTTTT
56 TCGCAATACGAGTTAATTTTT
** * * * *
118028299 TTGAAAAGTAGAAATTGAAAATACCTCA--ATGTGTCTTGAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCACCTCTCGCAATAC
*
118028362 GAGTTGATTTTT
65 GAGTTAATTTTT
118028374 TTG--AAACAGAAAT
1 TTGAAAAACAGAAAT
118028387 AAAAACATCA
Statistics
Matches: 1220, Mismatches: 249, Indels: 272
0.70 0.14 0.16
Matches are distributed among these distances:
73 136 0.11
74 129 0.11
75 167 0.14
76 74 0.06
77 151 0.12
78 15 0.01
79 27 0.02
80 32 0.03
81 43 0.04
82 17 0.01
83 21 0.02
84 144 0.12
85 59 0.05
86 26 0.02
87 46 0.04
88 37 0.03
89 66 0.05
90 30 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATACG
AGTTAATTTTT
Found at i:118026945 original size:164 final size:160
Alignment explanation
Indices: 118026621--118028319 Score: 1171
Period size: 164 Copynumber: 10.6 Consensus size: 160
118026611 ATAGACAATA
* * * * *
118026621 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAA-ACACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * * *
118026684 TCGATTTTTTTGAAAGGCAAAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACC-TGA
63 T-TAATTTTTTGAAA-ATATAAATTG-AAAACAGAAATTGAAATTACCTCAGC--GTG-CCTTGA
** *
118026748 GGCTCAACTCGTCTCTCGCAATACGAGTTGATTTTTTTT
122 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
* *
118026787 ATAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-
* * *
118026852 AATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCTTGAGGCTC
65 AA-TTTTTTG-AAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTC
* * *
118026917 AACTTACCTCTCGCAGTATGAGTTGA-TTTTTTG
127 AACTCACCTCTCGCAATATGAGTTGATTTTTTTT
* * * **
118026950 AAAGACA-AATATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAA-ACAGAA-ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
118027014 TGA-TTTTT-----T-T---TT-ACAACAGAAATTGAAATTACCTCAGCGTGTCC-TAAGGCTCA
64 TAATTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCA
118027067 ACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATT
128 ACTCACCTCTCGCAATATGAGTTG-A---TTTT------T-T---TT
* *
118027114 GAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTTGCAATATGAG
1 -AAAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
118027178 TTGATTTTTTG-------AAA--G---ACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCA
63 TTAATTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCA
** * *
118027231 ACTCATTTCTAGCAATATGAGTTGATTTTTTTG
128 ACTCACCTCTCGCAATATGAGTTGATTTTTTTT
* * *
118027264 ACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-
*
118027329 AATTTTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCA
65 AA-TTTTTTGAAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCA
*
118027394 ACTCACCTCTCGCAATATGAGTTGA--TTTTTG
128 ACTCACCTCTCGCAATATGAGTTGATTTTTTTT
** *
118027425 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
118027490 GA-TTTTTGAAAA-ATAGATTGAAACACAAAAATTGACAA-TACATCAGCGTGCCTCGAGGCTCA
65 AATTTTTTGAAAATATAAATTGAAA-ACAGAAATTGA-AATTACCTCAGCGTGCCTTGAGGCTCA
**
118027552 ACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
128 ACTCACCTCTCGCAATATGAGTTGATTTTTTTT
* *
118027584 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTA
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* * * * *
118027649 A-TTTTTGAAAAACATAAATTG--AACAGAAATTGAAACTACCTTAACGTGTCTTGAGGCTCAAC
66 ATTTTTTG-AAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAAC
**
118027711 TCATTTCTCGCAATATGAGTTGATTTTTTTTT
130 TCACCTCTCGCAATATGAGTTGA-TTTTTTTT
* * * * **
118027743 GAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 -AAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
118027808 TGATTTTTT-----T-T---TTTACAACAGAAATTGAAATTACCTCAGCATGTCC-TGAGGCTCA
64 TAATTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCA
118027863 ACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAATATAAATT
128 ACTCACCTCTCGCAATATGAGTTG-A---TTTT-----T-T---TT
*
118027909 GAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 -AAAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAG
* *
118027973 TTGA-TTTTTG---------A---CAAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTC
63 TTAATTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTC
** *
118028024 AACTCATTTCTCGTAATATGAGTTGATTTTTTTGAAAAATAGATT
127 AACTCACCTCTCGCAATATGAGTTGA--TTTTT------T---TT
* * *
118028069 GAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 -AAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
118028133 TTGA-TTTTTG---------A---AAAACAGAAATTGAAAATATCTCAGCGTGTCC-TGAGGCTC
63 TTAATTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTC
* *
118028184 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATA
127 AACTCACCTCTCGCAATATGAGTTGATTTTT-------TTT
* * * * **
118028225 AATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGCAATATGAG
1 AA---AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
118028290 TTGATTTTTTTGAAAAGTAGAAATTGAAAA
63 TT-AATTTTTTGAAAA-TATAAATTGAAAA
118028320 TACCTCAATG
Statistics
Matches: 1272, Mismatches: 150, Indels: 216
0.78 0.09 0.13
Matches are distributed among these distances:
148 54 0.04
149 58 0.05
150 14 0.01
151 2 0.00
152 2 0.00
153 1 0.00
154 59 0.05
155 7 0.01
156 5 0.00
157 110 0.09
158 137 0.11
159 38 0.03
160 151 0.12
161 76 0.06
162 123 0.10
163 72 0.06
164 153 0.12
165 84 0.07
166 118 0.09
167 3 0.00
169 1 0.00
172 4 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (160 bp):
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
ATTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTTT
Found at i:118027178 original size:239 final size:236
Alignment explanation
Indices: 118026707--118028386 Score: 1668
Period size: 239 Copynumber: 7.1 Consensus size: 236
118026697 AAGGCAAAAA
* * * * *
118026707 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCGCAATAT
* *
118026772 GAGTTGA-TTTTTTTTATAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
64 GAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
* * *
118026836 CTCGCAATATGAGTTAAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCA
129 CTCGCAATATGAGTT-GATTTTTTTG-AAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCA
* *
118026901 ACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTT
191 ACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
118026947 TTGAAAGACA-AATATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTGAAAAACAGAA-ATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
118027011 AGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTC
65 AGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
118027076 TCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAA
130 TCGCAATATGAGTTG-ATTTTTTTG-AAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAA
*
118027141 CGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTT
192 CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * *
118027186 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * *
118027251 GTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAAGCTCAACTCACCTCT
66 GTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
118027315 CGCAATATGAGTTGAATTTTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACG
131 CGCAATATGAGTTG-ATTTTTTTGAAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAACG
118027380 TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
194 TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * *
118027422 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * *
118027487 GTTGATTTTTGAAAAATAGATTGAAACACAAAAATTGACAA-TACATCAGCGTG-CCTCGAGGCT
66 GTTGATTTTT------T---TTTACA-ACAGAAATTGA-AATTACCTCAGCGTGTCCT-GAGGCT
*
118027550 CAACTCACCTCTCGCAATATGAGTTGA--TTTTTG---------A---AAAACAGAAATTGAAAA
119 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAAT
* * *
118027601 TACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATACGAGTT-AATTT
184 TACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
118027653 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTTAACGTGTCTTGAGGCTCAACTCATTTC
1 TTG--------AAA---AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTC
* * * * *
118027718 TCGCAATATGAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGC
55 TCGCAATATGAGTTGATTTTTTTTT-ACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
** *
118027783 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTT-----T-T---TT-ACAACAGAAATTGAAA
118 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAA
* *
118027838 TTACCTCAGCATGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
183 TTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTT
* * * **
118027894 TTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACC
1 TTG---------A---AAAA-CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATT
*
118027959 TCTCGCAATATGAGTTGA---TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
53 TCTCGCAATATGAGTTGATTTTTTTTTAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
** * * *
118028021 CTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTGAAAA-ATAGATTGAAACACAAAAATTGA
117 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAA-ACAGAAATTGA
* **
118028085 CAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
181 -AATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * **
118028140 TTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * * * *
118028205 GTTGATTTTTGAAAAACATAAATT-GAACAGAAATTGAAACTACCTCAACGTGTCTTGAGACTCA
66 GTTGATTTTT--------T--TTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
** * *
118028269 ACTCATTTCTCGCAATATGAGTTGATTTTTTTG-----A-AAA--G----TAGAAATTGAAAATA
121 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTA
* * *
118028322 CCTCAATGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
186 CCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
118028374 TTG--AAACAGAAAT
1 TTGAAAAACAGAAAT
118028387 AAAAACATCA
Statistics
Matches: 1266, Mismatches: 97, Indels: 162
0.83 0.06 0.11
Matches are distributed among these distances:
230 1 0.00
231 62 0.05
232 67 0.05
233 61 0.05
234 65 0.05
235 3 0.00
236 73 0.06
237 85 0.07
238 171 0.14
239 296 0.23
240 38 0.03
241 6 0.00
242 72 0.06
243 58 0.05
244 75 0.06
245 2 0.00
246 15 0.01
247 54 0.04
248 7 0.01
249 53 0.04
250 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (236 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
GTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAACGTG
CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
Found at i:118027337 original size:75 final size:74
Alignment explanation
Indices: 118027112--118027354 Score: 335
Period size: 74 Copynumber: 3.3 Consensus size: 74
118027102 AAAATATAAA
* * *
118027112 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGA
118027177 GTTGA-TTTT
65 GTTGATTTTT
* * * **
118027186 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGA
118027251 GTTGATTTTT
65 GTTGATTTTT
* * *
118027261 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAG
118027326 TTGAATTTTT
66 TTG-ATTTTT
* *
118027336 TTGAAAATATAAATTGAAA
1 TTGAAAACAGAAATTGAAA
118027355 AGCAGAAATT
Statistics
Matches: 147, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
74 115 0.78
75 32 0.22
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAG
TTGATTTTT
Found at i:118027442 original size:73 final size:73
Alignment explanation
Indices: 118027349--118027501 Score: 238
Period size: 73 Copynumber: 2.1 Consensus size: 73
118027339 AAAATATAAA
118027349 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
118027413 AGTTGATTT
65 AGTTGATTT
* ** *
118027422 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATG
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
118027486 AGTTGATTT
65 AGTTGATTT
118027495 TTGAAAA
1 TTGAAAA
118027502 ATAGATTGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
72 3 0.04
73 66 0.89
74 5 0.07
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:118027573 original size:158 final size:159
Alignment explanation
Indices: 118027186--118028386 Score: 828
Period size: 158 Copynumber: 7.6 Consensus size: 159
118027176 AGTTGATTTT
* * * * ** *
118027186 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGA
1 TTGAAA-ACAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
118027251 GTTGATTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCTTGAAGCTCAACTCACCTCT
65 GTTGA-TTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
118027315 CGCAATATGAGTTGAATTTTTTTGAAAATATAAA
129 CGCAATATGAGTTG-A--TTTTTGAAAACATAAA
* *
118027349 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* **
118027414 GTTGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
65 GTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
118027478 GTAATATGAGTTGATTTTTGAAAA-ATAGA
130 GCAATATGAGTTGATTTTTGAAAACATAAA
* * *
118027507 TTGAAACACAAAAATTGACAA-TACATCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATG
*
118027571 AGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 AGTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
118027635 CGCAATACGAGTTAATTTTTGAAAAACATAAA
129 CGCAATATGAGTTGATTTTTG-AAAACATAAA
* * * **
118027667 TTG--AACAGAAATTGAAACTACCTTAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
118027730 TTGATTTTTTTTTGA-AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
66 TTGA---TTTTTTGACAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
**
118027794 CTCGCAATATGAGTTGATTTTT-------T-TT
127 CTCGCAATATGAGTTGATTTTTGAAAACATAAA
* * * * * *
118027819 TTTACAACAGAAATTGAAATTACCTCAGCATGTCC-TGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAACTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
118027883 GTTGAATTTTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAG
65 GTTG-A-TTTTTTG---------A---CAAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAG
118027947 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AC-----
114 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAA
* * * ** *
118027985 ----AAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAACAAAAATTGAAACTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
118028045 GTTGATTTTTTTGAAAAATAGATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCT
65 GTTGA--TTTTT------T-GA---CAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCT
*
118028110 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
117 CAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACATAAA
*
118028154 TTG------AAAA-T---A-T--CTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAACTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
118028205 GTTGA-TTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGACTCA
65 GTTGATTTTTTG----AC----A---AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
**
118028269 ACTCATTTCTCGCAATATGAGTTGA-TTTT-------T---
119 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAA
* * * * * *
118028299 TTGAAAAGTAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAA-CAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
118028364 GTTGATTTTTTTG--AAACAGAAAT
65 GTTGA-TTTTTTGACAAACAGAAAT
118028387 AAAAACATCA
Statistics
Matches: 865, Mismatches: 89, Indels: 183
0.76 0.08 0.16
Matches are distributed among these distances:
145 3 0.00
148 9 0.01
150 1 0.00
151 2 0.00
152 5 0.01
153 10 0.01
154 55 0.06
155 3 0.00
156 7 0.01
157 110 0.13
158 140 0.16
159 57 0.07
160 119 0.14
161 87 0.10
162 126 0.15
163 61 0.07
164 2 0.00
165 2 0.00
166 61 0.07
167 3 0.00
168 1 0.00
169 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (159 bp):
TTGAAAACAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAACATAAA
Found at i:118027626 original size:73 final size:73
Alignment explanation
Indices: 118027507--118027893 Score: 371
Period size: 77 Copynumber: 5.0 Consensus size: 73
118027497 GAAAAATAGA
* * * *
118027507 TTGAAACACAAAAATTGACAATACATCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATG
118027571 AGTTGATTT
65 AGTTGATTT
*
118027580 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
118027645 GTTAATTT
66 GTTGATTT
* * * * **
118027653 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTTAACGTGTCTTGAGGCTCAACTCATTTC
1 TTG--------AAA---AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
118027718 TCGCAATATGAGTTGATTTTTTT
55 TCGCAATATGAGTTGA----TTT
* * * * **
118027741 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
118027806 GTTGATTTTTTT
66 GTTGA----TTT
** * * *
118027818 TTTTACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
118027883 GTTGAATTT
66 GTTG-ATTT
118027892 TT
1 TT
118027894 TTGAAAATAT
Statistics
Matches: 268, Mismatches: 29, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
73 66 0.25
74 8 0.03
77 125 0.47
78 1 0.00
80 3 0.01
81 3 0.01
84 56 0.21
88 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:118027871 original size:558 final size:557
Alignment explanation
Indices: 118026947--118028375 Score: 2357
Period size: 558 Copynumber: 2.6 Consensus size: 557
118026937 AGTTGATTTT
* * * * * * **
118026947 TTGAAAGACAAATATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGA
** * * *
118027012 GTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCT
66 GTTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
118027077 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAAC
129 CGCAATATGAGTT-AA--TTTTTGAAAAACATAAATTG--AA-CAGAAATTGAAACTACCTCAAC
* ** *
118027142 GTGCCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAA
188 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAA
118027206 ATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGAGTTGA---TTTTTTTGACAA
253 ATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGAGTTGATTTTTTTTTTGACAA
* *
118027268 CAGAAATTGAAATTACCTCAGCGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATT
318 CAGAAATTGAAATTACCTCAGCATGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATT
118027333 TTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTC
383 TTTTTGAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTC
118027398 ACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
448 ACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
118027463 CTCAACTCATTTCTCGTAATATGAGTTGA-TTTTTGAAAAATAGA
513 CTCAACTCATTTCTCGTAATATGAGTTGATTTTTTGAAAAATAGA
*
118027507 TTGAAACACAAAAATTGACAATACATCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGA
118027572 GTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* *
118027637 CAATACGAGTTAATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTTAACGTGTCTTG
131 CAATATGAGTTAATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTG
118027702 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATACCT
196 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAATACCT
* *
118027767 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTACAACAGAAA
259 CAGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGAGTTGATTTTTTTTTTGACAACAGAAA
*
118027832 TTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
324 TTGAAATTACCTCAGCATGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
118027897 AAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCT
389 AAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCT
118027962 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
454 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
118028027 TCATTTCTCGTAATATGAGTTGATTTTTTTGAAAAATAGA
519 TCATTTCTCGTAATATGAGTTGA-TTTTTTGAAAAATAGA
*
118028067 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGA
*
118028132 GTTGATTTTTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
118028197 CAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTG
131 CAATATGAGTTAATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTG
* * *
118028262 AGACTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAA-AGTAGAAATTGAAAATACCTC
196 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGA-CAAAAATTGAAAATACCTC
*** ** *
118028326 AATGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTT
260 AGCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGAGTTGATTTTTTT
118028376 GAAACAGAAA
Statistics
Matches: 818, Mismatches: 42, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
552 56 0.07
553 2 0.00
555 92 0.11
557 3 0.00
558 369 0.45
560 296 0.36
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (557 bp):
TTGAAACACAAAAATTGACAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTAATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTG
AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCA
GCATGTCTTGAGGCTCAACTCATTTCTAGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATT
GAAATTACCTCAGCATGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAA
AATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
ATTTCTCGTAATATGAGTTGATTTTTTGAAAAATAGA
Found at i:118028000 original size:73 final size:73
Alignment explanation
Indices: 118027907--118028054 Score: 228
Period size: 73 Copynumber: 2.0 Consensus size: 73
118027897 AAAATATAAA
118027907 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
118027971 AGTTGATTT
65 AGTTGATTT
* ** *
118027980 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATG
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
118028044 AGTTGATTT
65 AGTTGATTT
118028053 TT
1 TT
118028055 TTGAAAAATA
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
73 64 0.93
74 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:118028137 original size:160 final size:161
Alignment explanation
Indices: 118027741--118028379 Score: 812
Period size: 160 Copynumber: 4.0 Consensus size: 161
118027731 TGATTTTTTT
* * * * **
118027741 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
118027806 GTTGATTTTTTTTTTTAC-AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACC
65 GTTGA----TTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
118027870 TCTCGCAATATGAGTTGAATTTTTTTGAAAATATAAA
126 TCTCGCAATATGAGTTG-ATTTTTTTGAAAACATAAA
* *
118027907 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* **
118027972 GTTGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
65 GTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
118028036 GTAATATGAGTTGATTTTTTTGAAAA-ATAGA
130 GCAATATGAGTTGATTTTTTTGAAAACATAAA
* **
118028067 TTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATG
* *
118028131 AGTTGA-TTTTTGAAAAACAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 AGTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
118028195 CGCAATATGAGTTGA--TTTTTGAAAAACATAAA
129 CGCAATATGAGTTGATTTTTTTG-AAAACATAAA
* * * **
118028227 TTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGACTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** *
118028290 TTGATTTTTTTGA-AAAGTAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCT
66 TTGA-TTTTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
118028354 TGCAATATGAGTTGATTTTTTTGAAA
129 CGCAATATGAGTTGATTTTTTTGAAA
118028380 CAGAAATAAA
Statistics
Matches: 423, Mismatches: 38, Indels: 30
0.86 0.08 0.06
Matches are distributed among these distances:
156 2 0.00
157 52 0.12
158 10 0.02
159 67 0.16
160 142 0.34
161 29 0.07
162 59 0.14
165 1 0.00
166 61 0.14
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (161 bp):
TTGAAAACAAAAATTGAAACTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAAACATAAA
Found at i:118028159 original size:87 final size:86
Alignment explanation
Indices: 118027991--118028151 Score: 236
Period size: 87 Copynumber: 1.9 Consensus size: 86
118027981 TGACAAACAG
* * ** *
118027991 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
118028056 TGAAAAATAGATTGAAACACAA
65 TGAAAAACAGATTGAAACACAA
118028078 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGA-AATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
118028141 TGAAAAACAGA
65 TGAAAAACAGA
118028152 AATTGAAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 14 0.21
87 51 0.76
88 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (86 bp):
AAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAACAGATTGAAACACAA
Found at i:118042265 original size:16 final size:18
Alignment explanation
Indices: 118042231--118042268 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
118042221 ATCCTTATTT
*
118042231 AAATAAAATATAATGGTA
1 AAATAAAATATAATAGTA
118042249 AAATAAAATA-AA-AGTA
1 AAATAAAATATAATAGTA
118042265 AAAT
1 AAAT
118042269 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAATAGTA
Found at i:118045197 original size:18 final size:18
Alignment explanation
Indices: 118045176--118045229 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
118045166 CCACCACCAA
118045176 TTCCACTAGCCACACCTT
1 TTCCACTAGCCACACCTT
*
118045194 TTCCACCA-CCA-A-C--
1 TTCCACTAGCCACACCTT
118045207 -TCCACTAGCCACACCTT
1 TTCCACTAGCCACACCTT
118045224 TTCCAC
1 TTCCAC
118045230 CACCAAATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 3 0.11
14 1 0.04
15 2 0.07
16 1 0.04
17 3 0.11
18 12 0.43
ACGTcount: A:0.24, C:0.48, G:0.04, T:0.24
Consensus pattern (18 bp):
TTCCACTAGCCACACCTT
Found at i:118045225 original size:60 final size:60
Alignment explanation
Indices: 118045160--118045354 Score: 277
Period size: 60 Copynumber: 3.2 Consensus size: 60
118045150 TAAATCTTAG
* *
118045160 CCTTTTCCACCACCAATTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAAATCCACTAGCCACACCTTTTCCACTACCAACTCCACTAGCCACA
* *
118045220 CCTTTTCCACCACCAAATCCATTAGCCACTCCTTTTCCACTACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAAATCCACTAGCCACACCTTTTCCACTACCAACTCCACTAGCCACA
* * * *
118045280 CCTTTTCCACCACCAAATCCACTAGCCACA-CTTGCTCCATTACCTACTCCACTAACCACA
1 CCTTTTCCACCACCAAATCCACTAGCCACACCTT-TTCCACTACCAACTCCACTAGCCACA
*
118045340 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
118045355 CTTGTACCTA
Statistics
Matches: 122, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
59 6 0.05
60 116 0.95
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.23
Consensus pattern (60 bp):
CCTTTTCCACCACCAAATCCACTAGCCACACCTTTTCCACTACCAACTCCACTAGCCACA
Found at i:118045331 original size:30 final size:30
Alignment explanation
Indices: 118045160--118045354 Score: 250
Period size: 30 Copynumber: 6.5 Consensus size: 30
118045150 TAAATCTTAG
*
118045160 CCTTTTCCACCACCAATTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
118045190 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* * *
118045220 CCTTTTCCACCACCAAATCCATTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
118045250 CCTTTTCCACTACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
118045280 CCTTTTCCACCACCAAATCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
118045310 -CTTGCTCCATTACCTACTCCACTAACCACA
1 CCTT-TTCCACCACCAACTCCACTAGCCACA
*
118045340 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
118045355 CTTGTACCTA
Statistics
Matches: 145, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
29 3 0.02
30 142 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.23
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:118045851 original size:10 final size:11
Alignment explanation
Indices: 118045838--118045961 Score: 51
Period size: 11 Copynumber: 10.8 Consensus size: 11
118045828 ATATTTCTTA
118045838 ATATTATAT-T
1 ATATTATATAT
118045848 ATATTATATAT
1 ATATTATATAT
* *
118045859 ATATTCTTTTAAT
1 ATATT-ATAT-AT
**
118045872 ATATTAGGTAT
1 ATATTATATAT
* *
118045883 AT-TCTAAATTCT
1 ATAT-TATA-TAT
118045895 ATATTACGTATAT
1 ATATTA--TATAT
118045908 ATATTATACTATT
1 ATATTATA-TA-T
*
118045921 TTATGTATATAT
1 ATAT-TATATAT
118045933 AT-TTA-ATACT
1 ATATTATATA-T
*
118045943 ATATTATTTAT
1 ATATTATATAT
118045954 ATA-TATAT
1 ATATTATAT
118045962 TTTACATGTT
Statistics
Matches: 86, Mismatches: 14, Indels: 28
0.67 0.11 0.22
Matches are distributed among these distances:
9 3 0.03
10 19 0.22
11 22 0.26
12 15 0.17
13 22 0.26
14 5 0.06
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (11 bp):
ATATTATATAT
Found at i:118045919 original size:23 final size:24
Alignment explanation
Indices: 118045871--118045959 Score: 92
Period size: 23 Copynumber: 3.8 Consensus size: 24
118045861 ATTCTTTTAA
* * * *
118045871 TATATTAGGTATAT-TCTAAATTC
1 TATATTATGTATATATATTAATAC
*
118045894 TATATTACGTATATATATT-ATAC
1 TATATTATGTATATATATTAATAC
*
118045917 TATTTTATGTATATATATTTAATAC
1 TATATTATGTATATATA-TTAATAC
*
118045942 TATATTATTTATATATAT
1 TATATTATGTATATATAT
118045960 ATTTTACATG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
23 31 0.56
24 5 0.09
25 19 0.35
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATTATGTATATATATTAATAC
Found at i:118045931 original size:25 final size:25
Alignment explanation
Indices: 118045838--118046033 Score: 109
Period size: 25 Copynumber: 8.0 Consensus size: 25
118045828 ATATTTCTTA
* *
118045838 ATATTATATTATATTATATATATAT
1 ATATTATACTATATTATGTATATAT
* * * *
118045863 -TCTTTTAATATATTAGGTATAT-T
1 ATATTATACTATATTATGTATATAT
* * * *
118045886 CTA-AATTCTATATTACG--TATAT
1 ATATTATACTATATTATGTATATAT
*
118045908 ATATTATACTATTTTATGTATATAT
1 ATATTATACTATATTATGTATATAT
*
118045933 AT-TTAATACTATATTATTTATATAT
1 ATATT-ATACTATATTATGTATATAT
* * * *
118045958 ATATTTTAC-ATGTTATCTTATGTAT
1 ATATTATACTATATTAT-GTATATAT
* * *
118045983 ATATTTTAATTATATTATGTATGTAT
1 ATATTAT-ACTATATTATGTATATAT
* * * *
118046009 TTTTTACACTATATTATGTACATAT
1 ATATTATACTATATTATGTATATAT
118046034 TTTTAATATT
Statistics
Matches: 130, Mismatches: 31, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
21 3 0.02
22 3 0.02
23 20 0.15
24 26 0.20
25 59 0.45
26 13 0.10
27 6 0.05
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
ATATTATACTATATTATGTATATAT
Found at i:118046212 original size:16 final size:15
Alignment explanation
Indices: 118046188--118046222 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
118046178 TAATTATTAT
118046188 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
118046204 TATTTTAATATTTTA
1 TATTCTAATATTTTA
118046219 TATT
1 TATT
118046223 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:118055203 original size:17 final size:16
Alignment explanation
Indices: 118055179--118055216 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
118055169 AAGGCATCTT
*
118055179 AAAAAAAAGAGAAAAG
1 AAAAAAAAGAAAAAAG
118055195 AAAAGAAAAGAAAAAAG
1 AAAA-AAAAGAAAAAAG
118055212 AAAAA
1 AAAAA
118055217 GAGAGAGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAAG
Found at i:118056318 original size:73 final size:74
Alignment explanation
Indices: 118056161--118056318 Score: 210
Period size: 73 Copynumber: 2.1 Consensus size: 74
118056151 CAATTTCCGT
* * *
118056161 TTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACA
1 TTTTT-AATTTATGCCTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGCTGAGCATCAGGACA
* *
118056226 CGCTGAGGTA
65 CGCCGAAGTA
* * * * *
118056236 ATTTCAATTTATGCCTTTC-AAAAATCAACTCATATTGCAAGAGGTGAGCTGAGCCTCGGGGCAC
1 TTTTTAATTTATGCCTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGCTGAGCATCAGGACAC
118056300 GCCGAAGTA
66 GCCGAAGTA
118056309 TTTTTAATTT
1 TTTTTAATTT
118056319 CTATTTTTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
73 55 0.77
74 13 0.18
75 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (74 bp):
TTTTTAATTTATGCCTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGCTGAGCATCAGGACAC
GCCGAAGTA
Found at i:118056331 original size:14 final size:13
Alignment explanation
Indices: 118056307--118056353 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
118056297 CACGCCGAAG
118056307 TATTTTTAATTTC
1 TATTTTTAATTTC
118056320 TATTTTTCAATTTC
1 TATTTTT-AATTTC
**
118056334 TGCTTTTAATTTC
1 TATTTTTAATTTC
*
118056347 TGTTTTT
1 TATTTTT
118056354 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.68
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:118056418 original size:100 final size:100
Alignment explanation
Indices: 118056251--118056517 Score: 360
Period size: 100 Copynumber: 2.7 Consensus size: 100
118056241 AATTTATGCC
* * * * * *
118056251 TTTCAAAAATCAACTCATATTGCAAGAGGTGAGCTGAGCCTCGGGGCACGCCGAAGTATTTTTAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAA
** * *
118056316 TTTCTATTTTTCAATTTCTG-CTTTTAATTTCTGTT
65 TTTCTATTTTTCAATTTCTGCCTTACAAATTCTGCT
*
118056351 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCATGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAA
* *
118056416 TTTCTGTTTTTCAATTTTTGCCTTACAAATTCTGCT
65 TTTCTATTTTTCAATTTCTGCCTTACAAATTCTGCT
*
118056452 TTTC--AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTATTTTCAA
118056515 TTT
65 TTT
118056518 TTGTTTTTTT
Statistics
Matches: 149, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
98 3 0.02
99 56 0.38
100 75 0.50
101 15 0.10
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (100 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAAT
TTCTATTTTTCAATTTCTGCCTTACAAATTCTGCT
Found at i:118056669 original size:158 final size:149
Alignment explanation
Indices: 118056538--118056837 Score: 394
Period size: 147 Copynumber: 2.0 Consensus size: 149
118056528 AATTTATGTT
*
118056538 TCAAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGAC-GCTGAGGTAATTTCAATT
1 TCAAAAAAATAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACAGCTGAGGTAATTTCAATT
* *
118056602 TTTG-TTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTG-GGA
66 TCTGCTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-
118056664 TATTTTCAAATTCTATTTTTA
129 TATTTTCAAATTCTATTTTTA
* ** *
118056685 TCAAAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAAT
1 TCAAAAAAATAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACA-GCTGAGGTAATTTCAAT
* *
118056750 TTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACG-TCG
65 TTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-G
** *
118056814 AGGTCCTTTCAAATTCTGTTTTTA
126 AGGTATTTTCAAATTCTATTTTTA
118056838 ATTTTTTTTT
Statistics
Matches: 132, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
147 42 0.32
149 22 0.17
150 6 0.05
151 35 0.27
152 1 0.01
153 24 0.18
154 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (149 bp):
TCAAAAAAATAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACAGCTGAGGTAATTTCAATT
TCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
TTTTCAAATTCTATTTTTA
Found at i:118056803 original size:75 final size:73
Alignment explanation
Indices: 118056538--118056796 Score: 321
Period size: 76 Copynumber: 3.5 Consensus size: 73
118056528 AATTTATGTT
* * * *
118056538 TCAAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGAC-GCTGAGGTAATTTCAATT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTCAATT
* *
118056602 TTTGTTTG
66 TCTGTTTA
*
118056610 TC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTG-GGATATTTTCAA
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGG-TATTTTC-A
* *
118056673 ATTCTATTTTTA
63 ATT-TCTGTTTA
*
118056685 TCAAAAAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAA
1 TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAA
118056749 TTTCTGCTTT-
64 TTTCTG-TTTA
118056759 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
118056797 TCTCGGGCCA
Statistics
Matches: 164, Mismatches: 12, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
71 40 0.24
72 4 0.02
73 14 0.09
74 11 0.07
75 41 0.25
76 46 0.28
77 8 0.05
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (73 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTCAATT
TCTGTTTA
Found at i:118057048 original size:71 final size:71
Alignment explanation
Indices: 118056951--118057085 Score: 225
Period size: 71 Copynumber: 1.9 Consensus size: 71
118056941 GTTTTAATTC
* *
118056951 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTA
118057016 TCATCA
66 TCATCA
* * *
118057022 AAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAAGACCCATTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
118057086 CTGCTCAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 59 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTA
TCATCA
Done.