Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 356 of 373
Found at i:118057183 original size:155 final size:155
Alignment explanation
Indices: 118056858--118057211 Score: 414
Period size: 155 Copynumber: 2.3 Consensus size: 155
118056848 AATTTATGTG
* * * * *
118056858 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGGGTTGAACCTCAAGACACTGAGGTGTTTTCCA
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACTGAGGTATTTTCAA
** *
118056923 TTTCTATTTTCAATTTCTGTTTTAATTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
65 TTTC-ATGCTCAATTTATGTTTT-ATTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
118056988 CAAGTCACATTGAGGTATTTTCAATTTAT
128 CAAGTCACA-TGAGGTATTTTCAATTTAT
** * * *
118057017 CATCAAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAAGACCCATTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA--CACTGAGGTATTTTCA
* *
118057082 ATTTC-TGCTCAATTTATG-TTT-TTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
64 ATTTCATGCTCAATTTATGTTTTATTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC
* *
118057144 ACA-T-GC-TGAGGTGTTTTCAATTTCTATT
129 A-AGTCACATGAGGTATTTTCAA-TT-TA-T
*
118057172 TTTCAAAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
118057212 ATTGGCTTAC
Statistics
Matches: 167, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
152 13 0.08
153 2 0.01
154 3 0.02
155 77 0.46
156 1 0.01
157 3 0.02
158 48 0.29
159 2 0.01
160 18 0.11
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (155 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACTGAGGTATTTTCAAT
TTCATGCTCAATTTATGTTTTATTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA
GTCACATGAGGTATTTTCAATTTAT
Found at i:118057267 original size:69 final size:68
Alignment explanation
Indices: 118057182--118057322 Score: 192
Period size: 69 Copynumber: 2.1 Consensus size: 68
118057172 TTTCAAAAAA
* * * * * *
118057182 TCAACTCCTATTGCGAGAGGTGAGTTGAGCATTGGCTTACACGCTGAGGTATTTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTAAGTTGAGCATCGGCTCACACGCTGAGGT-GTTTTCAACTTCTG
118057247 TTTG
65 TTTG
* *
118057251 TCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAACTTCTGT
1 TCAACTCATATTGCGAGAGGTAAGTTGAGCATCGGCTCACACGCTGAGGTGTTTTCAACTTCTGT
*
118057316 TTT
66 TTG
118057319 TCAA
1 TCAA
118057323 AAAAATCAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
68 19 0.30
69 44 0.70
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.35
Consensus pattern (68 bp):
TCAACTCATATTGCGAGAGGTAAGTTGAGCATCGGCTCACACGCTGAGGTGTTTTCAACTTCTGT
TTG
Found at i:118057430 original size:74 final size:76
Alignment explanation
Indices: 118057251--118057459 Score: 264
Period size: 74 Copynumber: 2.8 Consensus size: 76
118057241 TTTCTGTTTG
* *
118057251 TCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCACACGCTGAGGT-GTTTTCAACTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTAGTTTTCAATTTCTG
**
118057315 TTTTTCAAAAAAA
64 TTCATCAAAAAAA
* * ** *
118057328 TCAACTCATGTTGCGAGAGGTGAATTGAGCCTTAGGACACGTTGAGGTAGTTTT-AATTTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGTTTTCAATTTCTGTT
118057392 CATC-AAAAAA
66 CATCAAAAAAA
** *
118057402 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTTTCAATT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGTTTTCAATT
118057460 AATGTTTTTT
Statistics
Matches: 113, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
73 4 0.04
74 51 0.45
75 22 0.19
76 5 0.04
77 31 0.27
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (76 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGTTTTCAATTTCTGTT
CATCAAAAAAA
Found at i:118057607 original size:87 final size:87
Alignment explanation
Indices: 118057397--118057694 Score: 243
Period size: 88 Copynumber: 3.4 Consensus size: 87
118057387 CTGTTCATCA
* *
118057397 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTAA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACACCGAGGTATTTTCAA-TAA
* * *
118057462 TGTTTTTTCAATTTATGCTTTTC
65 TCTCTTTACAATTTATGCTTTTC
* * *
118057485 AAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAA-A
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCAC--ACCGAGGTATTTTCAATA
118057549 ATCTGCTTTACAAATTT-TG-TTTT-
64 ATCT-CTTTAC-AATTTATGCTTTTC
* * * * * * * * *
118057572 AAAAATCAACTCATATTGGGATAAGTAAGTTGAGCCTTGGCGCACGTGCTGAGCTATTTTCAAT-
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCAC--ACCGAGGTATTTTCAATA
* * **
118057636 TTCTGTTTTTAATGTT-TAG-TTTT-
64 ATCTCTTTACAAT-TTAT-GCTTTTC
* *
118057659 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAATGAGTTGAGC
118057695 TCAGGATCAC
Statistics
Matches: 171, Mismatches: 31, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
85 3 0.02
86 6 0.04
87 61 0.36
88 76 0.44
89 6 0.04
90 19 0.11
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACACCGAGGTATTTTCAATAAT
CTCTTTACAATTTATGCTTTTC
Found at i:118057688 original size:175 final size:175
Alignment explanation
Indices: 118057397--118057712 Score: 417
Period size: 175 Copynumber: 1.8 Consensus size: 175
118057387 CTGTTCATCA
* * *
118057397 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTAA
1 AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGCGCACGCTGAGCTATTTTCAATTAA
* *
118057462 TGTTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTC-GGG
66 TGTTTTTTCAATTTATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAG-CTCAGGA
118057526 TCACATACCGAGGTATTTTCAAAATCTGCTTTACAAATTTTGTTTT
130 TCACATACCGAGGTATTTTCAAAATCTGCTTTACAAATTTTGTTTT
* * * *
118057572 AAAAATCAACTCATATTGGGATAAGTAAGTTGAGCCTTGGCGCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGCGCAC--GCTGAGCTATTTTCAATT
** * * *
118057637 TCTG-TTTTT-AATGTT-TAG-TTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGCTCA
64 AATGTTTTTTCAAT-TTAT-GCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCTCA
*
118057698 GGATCACATGCCGAG
127 GGATCACATACCGAG
118057713 TAAAGAATCA
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
174 3 0.02
175 91 0.75
176 8 0.07
177 19 0.16
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (175 bp):
AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCGGCGCACGCTGAGCTATTTTCAATTAA
TGTTTTTTCAATTTATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCTCAGGAT
CACATACCGAGGTATTTTCAAAATCTGCTTTACAAATTTTGTTTT
Found at i:118058381 original size:30 final size:30
Alignment explanation
Indices: 118058343--118058567 Score: 301
Period size: 30 Copynumber: 7.5 Consensus size: 30
118058333 TAAATCTTAG
*
118058343 CCTTTTCCACTACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* *
118058373 CCTATTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
118058403 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
118058433 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
118058463 CCTTTTCCACCACCAACACCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* *
118058493 CCTTTTCCACCACCAAATCCATTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
118058523 -CTTGCTCCATTACCTACTCCACTAACCACA
1 CCTT-TTCCACCACCAACTCCACTAGCCACA
*
118058553 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
118058568 CTTGTACCTA
Statistics
Matches: 173, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
29 3 0.02
30 170 0.98
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.22
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:118059094 original size:24 final size:23
Alignment explanation
Indices: 118059046--118059097 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
118059036 TCTTTTTTGT
*
118059046 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
118059069 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
118059093 TATTA
1 TATTA
118059098 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:118059141 original size:25 final size:25
Alignment explanation
Indices: 118059113--118059254 Score: 110
Period size: 25 Copynumber: 5.7 Consensus size: 25
118059103 ATTCTAAATT
*
118059113 CTATATTACGTATATATATATTATA
1 CTATATTATGTATATATATATTATA
* *
118059138 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATT-ATA
* *
118059163 CTATATTATTTATATATATATTTTA
1 CTATATTATGTATATATATATTATA
* * * *
118059188 C-ATGTTATCTTATGTATATATTTTAA
1 CTATATTAT-GTATATATATATTAT-A
* * * *
118059214 TTATATTATGTATGTAT-TTTTACA
1 CTATATTATGTATATATATATTATA
*
118059238 CTATATTATGTACATAT
1 CTATATTATGTATATAT
118059255 TTTTAATATT
Statistics
Matches: 94, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
24 23 0.24
25 55 0.59
26 10 0.11
27 6 0.06
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (25 bp):
CTATATTATGTATATATATATTATA
Found at i:118059169 original size:50 final size:49
Alignment explanation
Indices: 118059046--118059262 Score: 160
Period size: 50 Copynumber: 4.4 Consensus size: 49
118059036 TCTTTTTTGT
* * * * *
118059046 TATTAT-TATAT-TTCTTAATATTATATTATATATATAT-TCTTTTAATA
1 TATTATGTATATATT-TTAATACTATATTATGTATATATATATTATACTA
* * * * *
118059093 TATTAGGTATAT-TCTAAATTCTATATTACGTATATATATATTATACTA
1 TATTATGTATATATTTTAATACTATATTATGTATATATATATTATACTA
* * *
118059141 TTTTATGTATATATCTTTAATACTATATTATTTATATATATATTTTACATGTTA
1 TATTATGTATATAT-TTTAATACTATATTATGTATATATATATTATAC----TA
* * * *
118059195 TCTTATGTATATATTTTAAT--TATATTATGTATGTAT-TTTTACACTA
1 TATTATGTATATATTTTAATACTATATTATGTATATATATATTATACTA
*
118059241 TATTATGTACATATTTTTAATA
1 TATTATGTATATA-TTTTAATA
118059263 TTATCACGTA
Statistics
Matches: 134, Mismatches: 26, Indels: 19
0.75 0.15 0.11
Matches are distributed among these distances:
46 13 0.10
47 30 0.22
48 23 0.17
49 1 0.01
50 32 0.24
51 14 0.10
53 6 0.04
54 15 0.11
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (49 bp):
TATTATGTATATATTTTAATACTATATTATGTATATATATATTATACTA
Found at i:118059263 original size:20 final size:20
Alignment explanation
Indices: 118059240--118059298 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
118059230 TTTTTACACT
118059240 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
118059260 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
118059283 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
118059299 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:118059434 original size:16 final size:15
Alignment explanation
Indices: 118059410--118059444 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
118059400 TAATTATTAT
118059410 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
118059426 TATTTTAATATTTTA
1 TATTCTAATATTTTA
118059441 TATT
1 TATT
118059445 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:118063206 original size:51 final size:51
Alignment explanation
Indices: 118063146--118063272 Score: 218
Period size: 51 Copynumber: 2.5 Consensus size: 51
118063136 AGTACTTCTA
*
118063146 ATCAGTGACAAGTGACAAGTGATCAGTGGTAGCCTCAGCTACACTTATCTG
1 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTG
* *
118063197 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTG
*
118063248 ATTAGTGACAAGTGACAAGTGATAA
1 ATCAGTGACAAGTGACAAGTGATAA
118063273 ATATGATCCG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (51 bp):
ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTG
Found at i:118066726 original size:3 final size:3
Alignment explanation
Indices: 118066690--118066741 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
118066680 TTAATTTGAC
* * * *
118066690 ATT ATT ATC ATT ATT -TT AAT ATT ATC ACT ATT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
118066735 ATT ATT A
1 ATT ATT A
118066742 GTAACATGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:118066774 original size:20 final size:20
Alignment explanation
Indices: 118066751--118066871 Score: 54
Period size: 20 Copynumber: 5.8 Consensus size: 20
118066741 AGTAACATGT
118066751 TTATTTTATTTTTATATTTA
1 TTATTTTATTTTTATATTTA
* *
118066771 TTA-TTTATTTATTTTATTTCT
1 TTATTTTATTT-TTATATTT-A
*
118066792 TTACTATTT-TTTATATATTT-
1 TTA-T-TTTATTTTTATATTTA
* *
118066812 TTACCATTTATTTATTTTATTGTAA
1 TTA--TTTTATTT-TTATATT-T-A
*
118066837 CATATTTTATTTTT-TATTTTA
1 -TTATTTTATTTTTATA-TTTA
118066858 TTATTTT-TTTTTAT
1 TTATTTTATTTTTAT
118066872 TATTATCATG
Statistics
Matches: 77, Mismatches: 10, Indels: 28
0.67 0.09 0.24
Matches are distributed among these distances:
19 12 0.16
20 23 0.30
21 8 0.10
22 14 0.18
23 8 0.10
24 10 0.13
26 2 0.03
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (20 bp):
TTATTTTATTTTTATATTTA
Found at i:118066794 original size:13 final size:12
Alignment explanation
Indices: 118066750--118066872 Score: 51
Period size: 13 Copynumber: 9.9 Consensus size: 12
118066740 TAGTAACATG
118066750 TTTATTTTATTT
1 TTTATTTTATTT
118066762 TTATATTTATTATTT
1 TT-TA-TT-TTATTT
118066777 ATTTATTTTATTT
1 -TTTATTTTATTT
*
118066790 CTTTA--CTATTT
1 -TTTATTTTATTT
*
118066801 TTTA-TATA-TT
1 TTTATTTTATTT
**
118066811 TTTA--CCATTT
1 TTTATTTTATTT
118066821 ATTTATTTTATTGT
1 -TTTATTTTATT-T
**
118066835 AACATATTTTATTT
1 --TTTATTTTATTT
118066849 TTTATTTTATTAT
1 TTTATTTTATT-T
*
118066862 TTTTTTTTATT
1 TTTATTTTATT
118066873 ATTATCATGG
Statistics
Matches: 87, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
9 1 0.01
10 12 0.14
11 11 0.13
12 11 0.13
13 26 0.30
14 6 0.07
15 18 0.21
16 2 0.02
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:118066810 original size:27 final size:28
Alignment explanation
Indices: 118066752--118066812 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
118066742 GTAACATGTT
* *
118066752 TATTTTATTTTTATATTTATTATTTATT
1 TATTTTATTTTTATATCTATTATTTATA
*
118066780 TATTTTATTTCTT-TA-CTATTTTTTATA
1 TATTTTATTT-TTATATCTATTATTTATA
118066807 TATTTT
1 TATTTT
118066813 TACCATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 15 0.52
28 12 0.41
29 2 0.07
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (28 bp):
TATTTTATTTTTATATCTATTATTTATA
Found at i:118066811 original size:31 final size:28
Alignment explanation
Indices: 118066750--118066811 Score: 79
Period size: 31 Copynumber: 2.1 Consensus size: 28
118066740 TAGTAACATG
*
118066750 TTTATTTTATTTTTATATTTATTATTTA
1 TTTATTTTATTTTTATATTTATTATATA
*
118066778 TTTATTTTATTTCTTTACTATTTTTTATATA
1 TTTATTTTA-TT-TTTA-TATTTATTATATA
118066809 TTT
1 TTT
118066812 TTACCATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 9 0.31
29 2 0.07
30 4 0.14
31 14 0.48
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTATTTTATTTTTATATTTATTATATA
Found at i:118066855 original size:44 final size:45
Alignment explanation
Indices: 118066752--118066856 Score: 110
Period size: 44 Copynumber: 2.4 Consensus size: 45
118066742 GTAACATGTT
* ** * *
118066752 TATTTTA-TTTTTATATTTATTATTTATTTATTTTATTTCTTTAC
1 TATTTTATTTTTTATTTTTACCATTTATTTATTTTATTTCGTAAC
* *
118066796 TATTTT-TTATATATTTTTACCATTTATTTATTTTA-TT-GTAAC
1 TATTTTATTTTTTATTTTTACCATTTATTTATTTTATTTCGTAAC
118066838 ATATTTTATTTTTTATTTT
1 -TATTTTATTTTTTATTTT
118066857 ATTATTTTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
42 3 0.06
43 8 0.16
44 38 0.78
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.70
Consensus pattern (45 bp):
TATTTTATTTTTTATTTTTACCATTTATTTATTTTATTTCGTAAC
Found at i:118066867 original size:16 final size:16
Alignment explanation
Indices: 118066839--118066877 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
118066829 TATTGTAACA
*
118066839 TATT-TTATTTTTTAT
1 TATTATTATTTTTTTT
118066854 T-TTATTATTTTTTTT
1 TATTATTATTTTTTTT
118066869 TATTATTAT
1 TATTATTAT
118066878 CATGGTACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 12 0.57
16 7 0.33
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TATTATTATTTTTTTT
Found at i:118066873 original size:13 final size:13
Alignment explanation
Indices: 118066839--118066875 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
118066829 TATTGTAACA
118066839 TATTTTATT-TTT
1 TATTTTATTATTT
118066851 TATTTTATTATTT
1 TATTTTATTATTT
*
118066864 TTTTTTATTATT
1 TATTTTATTATT
118066876 ATCATGGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
TATTTTATTATTT
Found at i:118067383 original size:19 final size:19
Alignment explanation
Indices: 118067359--118067395 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
118067349 TCGTAGACCA
118067359 AAATCGTTT-TTAATAAATC
1 AAATCGTTTATTAA-AAATC
118067378 AAATCGTTTATTAAAAAT
1 AAATCGTTTATTAAAAAT
118067396 AACCACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (19 bp):
AAATCGTTTATTAAAAATC
Found at i:118067775 original size:12 final size:12
Alignment explanation
Indices: 118067760--118067789 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
118067750 ATATCTAAAT
118067760 TTAATTATAATA
1 TTAATTATAATA
*
118067772 TTAATAATAATA
1 TTAATTATAATA
118067784 TTAATT
1 TTAATT
118067790 TATATAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAATTATAATA
Found at i:118072583 original size:6 final size:6
Alignment explanation
Indices: 118072572--118072618 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
118072562 GAAGATATTA
* *
118072572 TTTTAT TTTTAT TTTTGT TTTTA- -TTTAT TTTTA- TTTTAT TTTAAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
118072617 TT
1 TT
118072619 ATTAAATTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
4 4 0.11
5 5 0.14
6 26 0.74
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:118072600 original size:16 final size:15
Alignment explanation
Indices: 118072569--118072612 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
118072559 TAAGAAGATA
118072569 TTATTTTATTTTTATTT
1 TTATTTTA--TTTATTT
*
118072586 TTGTTTTTATTTATTT
1 TT-ATTTTATTTATTT
118072602 TTATTTTATTT
1 TTATTTTATTT
118072613 TAATTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 8 0.33
16 9 0.38
17 2 0.08
18 5 0.21
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (15 bp):
TTATTTTATTTATTT
Found at i:118072604 original size:10 final size:11
Alignment explanation
Indices: 118072569--118072618 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
118072559 TAAGAAGATA
118072569 TTATTTTATTT
1 TTATTTTATTT
*
118072580 TTATTTTTGTTT
1 TTA-TTTTATTT
118072592 TTA-TTTATTT
1 TTATTTTATTT
118072602 TTATTTTATTT
1 TTATTTTATTT
*
118072613 TAATTT
1 TTATTT
118072619 ATTAAATTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.26
11 15 0.44
12 10 0.29
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:118073198 original size:15 final size:14
Alignment explanation
Indices: 118073172--118073258 Score: 70
Period size: 15 Copynumber: 6.0 Consensus size: 14
118073162 TATTCTAATA
*
118073172 CTATTGTTATTTAT
1 CTATTTTTATTTAT
118073186 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
118073201 CTATTTATATTTCT
1 CTATTTTTATTTAT
*
118073215 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
118073230 CTATTTATTATATT-T
1 CTATTT-TTAT-TTAT
*
118073245 CTATTTCTATTTAT
1 CTATTTTTATTTAT
118073259 ATACTAATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
13 2 0.03
14 21 0.34
15 36 0.59
16 2 0.03
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.64
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:118073211 original size:29 final size:28
Alignment explanation
Indices: 118073178--118073285 Score: 78
Period size: 29 Copynumber: 3.7 Consensus size: 28
118073168 AATACTATTG
118073178 TTATTTATCTAATTTTTATTTATCTATTTA
1 TTATTT-TCT-ATTTTTATTTATCTATTTA
*
118073208 -TATTTCTACTATTATTATATT-TCTATTTA
1 TTATTT-T-CTATTTTTAT-TTATCTATTTA
* * *
118073237 TTATATTTCTATTTCTATTTATATACTAATA
1 TTAT-TTTCTATTTTTATTTATCTA-T-TTA
*
118073268 TTATTTTC-ATTATTATTT
1 TTATTTTCTATTTTTATTT
118073286 TTCTTATATA
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
28 2 0.03
29 40 0.63
30 13 0.21
31 8 0.13
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (28 bp):
TTATTTTCTATTTTTATTTATCTATTTA
Found at i:118073218 original size:44 final size:44
Alignment explanation
Indices: 118073170--118073289 Score: 108
Period size: 44 Copynumber: 2.8 Consensus size: 44
118073160 GCTATTCTAA
*
118073170 TACTATTGTTAT-TTATCTAATTT-TTAT-TTATCTATTTATATTTC
1 TACTATTATTATATT-TCT-ATTTATTATATT-TCTATTTATATTTC
* *
118073214 TACTATTATTATATTTCTATTTATTATATTTCTATTTCTATTTATA
1 TACTATTATTATATTTCTATTTATTATATTTCTATTTATA-TT-TC
* *
118073260 TACTAATATTAT-TTTC-A-TTATTATTTTTCT
1 TACTATTATTATATTTCTATTTATTATATTTCT
118073290 TATATATGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
43 16 0.24
44 28 0.42
45 10 0.15
46 12 0.18
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.63
Consensus pattern (44 bp):
TACTATTATTATATTTCTATTTATTATATTTCTATTTATATTTC
Found at i:118073227 original size:17 final size:15
Alignment explanation
Indices: 118073205--118073250 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
118073195 ATTTATCTAT
118073205 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
118073222 TTATATTTCTATTTA
1 TTATATTTCTATTTA
118073237 TTATATTTCTATTT
1 TTATATTTCTATTT
118073251 CTATTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:118073442 original size:27 final size:25
Alignment explanation
Indices: 118073332--118073477 Score: 70
Period size: 25 Copynumber: 5.9 Consensus size: 25
118073322 TCTATTTTTT
* *
118073332 TTTTACATTTTTTGT-TATTATATA
1 TTTTAAATTTTTTATATATTATATA
* **
118073356 TTTT-AACTTTTTATATA--ACGCTCA
1 TTTTAAATTTTTTATATATTA-TAT-A
* * *
118073380 TTTCAAA-TTTTTATACATTATTTA
1 TTTTAAATTTTTTATATATTATATA
* * *
118073404 CTTT-AATATTTTCATATATTATGTA
1 TTTTAAAT-TTTTTATATATTATATA
* *
118073429 TTTTAAATTTTTTTTAAACATTATATA
1 TTTTAAA--TTTTTTATATATTATATA
* *
118073456 TTTTGAATTGTTTATATATTAT
1 TTTTAAATTTTTTATATATTAT
118073478 TTTTAAAGAG
Statistics
Matches: 88, Mismatches: 23, Indels: 21
0.67 0.17 0.16
Matches are distributed among these distances:
22 1 0.01
23 10 0.11
24 22 0.25
25 32 0.36
26 3 0.03
27 19 0.22
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (25 bp):
TTTTAAATTTTTTATATATTATATA
Found at i:118075311 original size:19 final size:20
Alignment explanation
Indices: 118075287--118075327 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
118075277 AGGTGAGAAG
118075287 TAAAAA-TTTAGGGGGAAAA
1 TAAAAAGTTTAGGGGGAAAA
*
118075306 TAAAAAGTTTTGGGGGAAAA
1 TAAAAAGTTTAGGGGGAAAA
118075326 TA
1 TA
118075328 GTAGATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (20 bp):
TAAAAAGTTTAGGGGGAAAA
Found at i:118076152 original size:28 final size:28
Alignment explanation
Indices: 118076121--118076175 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
118076111 TTAAATATGA
118076121 TAAT-TTATTTTTTAATTTAATATTAAAT
1 TAATATTATTTTTTAATTTAA-ATTAAAT
* * *
118076149 TAATATTTTTTTTTCATTTCAATTAAA
1 TAATATTATTTTTTAATTTAAATTAAA
118076176 AATAACATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (28 bp):
TAATATTATTTTTTAATTTAAATTAAAT
Found at i:118079055 original size:21 final size:20
Alignment explanation
Indices: 118079031--118079073 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
118079021 TAAATAATAG
118079031 TATTAGAAATATACCATATAA
1 TATTAGAAATATA-CATATAA
* *
118079052 TATTAGATATATATATATAA
1 TATTAGAAATATACATATAA
118079072 TA
1 TA
118079074 GTATAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (20 bp):
TATTAGAAATATACATATAA
Found at i:118079072 original size:44 final size:43
Alignment explanation
Indices: 118079008--118079120 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 43
118078998 ATACATACAT
* * * *
118079008 ATATAAATATATATAAATAATAGTAT-TAGAAATAT-ACCATATA
1 ATATTAATATATAT-AATAATAGTATAAAAAAATATAACTA-ATA
118079051 ATATTAGATATATATATATAATAGTATAAAAAAATATAACTAATA
1 ATATTA-ATATATATA-ATAATAGTATAAAAAAATATAACTAATA
*
118079096 ATATTAAAATATATAATAATA-TATA
1 ATATTAATATATATAATAATAGTATA
118079121 TAATATATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 4 0.07
43 12 0.20
44 26 0.43
45 16 0.26
46 3 0.05
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.36
Consensus pattern (43 bp):
ATATTAATATATATAATAATAGTATAAAAAAATATAACTAATA
Found at i:118079094 original size:22 final size:20
Alignment explanation
Indices: 118079062--118079120 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
118079052 TATTAGATAT
118079062 ATATATATAATAGTATAAAAAA
1 ATATA-ATAATA-TATAAAAAA
* *
118079084 ATATAACTAATAATATTAAAAT
1 ATATAA-TAAT-ATATAAAAAA
118079106 ATATAATAATATATA
1 ATATAATAATATATA
118079121 TAATATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 4 0.12
21 5 0.16
22 22 0.69
23 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
ATATAATAATATATAAAAAA
Found at i:118081604 original size:74 final size:74
Alignment explanation
Indices: 118081409--118081644 Score: 350
Period size: 75 Copynumber: 3.2 Consensus size: 74
118081399 ACATAAATTG
* *
118081409 AACAGGAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
118081474 TTTCTTGAA
66 TTTTTTGAA
* *
118081483 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
118081548 TTTTTTTGAC
65 TTTTTTTGAA
* * *
118081558 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
118081622 -TTTTTGAA
66 TTTTTTGAA
* *
118081630 AACAAAAATTTAAAA
1 AACAGAAATTGAAAA
118081645 GAAATACCTC
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
72 19 0.13
74 59 0.40
75 68 0.47
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAA
Found at i:118081691 original size:149 final size:149
Alignment explanation
Indices: 118081409--118081701 Score: 360
Period size: 149 Copynumber: 2.0 Consensus size: 149
118081399 ACATAAATTG
* *
118081409 AACAGGAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * ** * ** *
118081474 TTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCACAAT
66 TTTCTTGAAAAGCAAAAATTAAAAATACCTCAACATGACCCGAGGCTCAACTCACATCTCACAAT
118081539 ATGAGTTGATTTTTTTGAC
131 ATGAGTTGATTTTTTTGAC
* * *
118081558 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** *
118081622 TTT-TTGAAAA-CAAAAATTTAAAAGAAATACCTCGGCATGACCCGAGGCTCAACTCACATCT-G
66 TTTCTTGAAAAGCAAAAA-TT--AA-AAATACCTCAACATGACCCGAGGCTCAACTCACATCTCA
* *
118081684 TATTATGAGTTGATTTTT
127 CAATATGAGTTGATTTTT
118081702 GAAAAAAGTA
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
146 5 0.04
147 9 0.07
148 3 0.02
149 76 0.62
150 29 0.24
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (149 bp):
AACAGAAATTGAAAATACCTCAACGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTCTTGAAAAGCAAAAATTAAAAATACCTCAACATGACCCGAGGCTCAACTCACATCTCACAAT
ATGAGTTGATTTTTTTGAC
Found at i:118082039 original size:73 final size:71
Alignment explanation
Indices: 118081862--118082039 Score: 200
Period size: 73 Copynumber: 2.5 Consensus size: 71
118081852 AGGAATTAAA
* * *
118081862 AGGCTTAACTCACTTCTCGCAATATGAGTCAA--TTTAAAACATAAACTAAAAGTACCTCGGCGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAACAAAAACTAAAAGTACCTCAGCGT
*
118081925 GCCCCG
66 GACCCG
* * ** * *
118081931 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAACAAAAGGAATTAAAA-TACCTCAG
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAAC-AAA--AACTAAAAGTACCTCAG
*
118081995 CGTGACCTG
63 CGTGACCCG
*
118082004 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTT
118082040 CCTTGGAAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 27 0.31
71 7 0.08
72 2 0.02
73 45 0.51
74 7 0.08
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (71 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAACAAAAACTAAAAGTACCTCAGCGT
GACCCG
Found at i:118100669 original size:12 final size:12
Alignment explanation
Indices: 118100654--118100780 Score: 56
Period size: 12 Copynumber: 10.5 Consensus size: 12
118100644 ACATACATAC
118100654 ATATATAAATAT
1 ATATATAAATAT
118100666 ATATATAAATAAT
1 ATATATAAAT-AT
*
118100679 AGTATTAGAAATAT
1 A-TA-TATAAATAT
*
118100693 ACCATAT-AATATT
1 A-TATATAAATA-T
* *
118100706 AGATATATATAT
1 ATATATAAATAT
118100718 AATAGTATAAA-A-
1 -ATA-TATAAATAT
*
118100730 A-ATATAACTA-
1 ATATATAAATAT
118100740 ATAATATTAAA-AT
1 AT-ATA-TAAATAT
118100753 ATATA-ATAATAT
1 ATATATA-AATAT
118100765 ATATA-AAATAT
1 ATATATAAATAT
118100776 A-ATAT
1 ATATAT
118100781 TAAAAACTTA
Statistics
Matches: 90, Mismatches: 10, Indels: 31
0.69 0.08 0.24
Matches are distributed among these distances:
9 5 0.06
10 7 0.08
11 9 0.10
12 34 0.38
13 18 0.20
14 11 0.12
15 6 0.07
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.37
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:118100700 original size:42 final size:42
Alignment explanation
Indices: 118100653--118100776 Score: 112
Period size: 42 Copynumber: 3.0 Consensus size: 42
118100643 TACATACATA
* * *
118100653 CATAT-ATAAATATATATATAAATAATAGTATTAGAAATATAC
1 CATATAAT-AATAGATATATAAATAATAGTATAAAAAATATAC
* * *
118100695 CATATAATATTAGATATATATATAATAGTATAAAAAATATAA
1 CATATAATAATAGATATATAAATAATAGTATAAAAAATATAC
* * *
118100737 C-TAATAATATTA-AAATATATAATAATA-TATATAAAATATA
1 CAT-ATAATAATAGATATATA-AATAATAGTATAAAAAATATA
118100777 ATATTAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
41 19 0.27
42 49 0.70
43 2 0.03
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (42 bp):
CATATAATAATAGATATATAAATAATAGTATAAAAAATATAC
Found at i:118100734 original size:21 final size:20
Alignment explanation
Indices: 118100710--118100776 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
118100700 AATATTAGAT
*
118100710 ATATATATAATAGTATAAAAA
1 ATATATATAATA-TATATAAA
118100731 ATATA-ACTAATA-ATATTAAA
1 ATATATA-TAATATATA-TAAA
118100751 ATATATAATAATATATATAAA
1 ATATAT-ATAATATATATAAA
118100772 ATATA
1 ATATA
118100777 ATATTAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
19 3 0.08
20 9 0.22
21 24 0.60
22 4 0.10
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (20 bp):
ATATATATAATATATATAAA
Found at i:118101082 original size:21 final size:23
Alignment explanation
Indices: 118101058--118101105 Score: 73
Period size: 21 Copynumber: 2.1 Consensus size: 23
118101048 AATAATACTT
118101058 TAAAAATAAT-TAAT-ATATTAA
1 TAAAAATAATATAATAATATTAA
118101079 TAAAAATAATAGTAATAATATTAA
1 TAAAAATAATA-TAATAATATTAA
118101103 TAA
1 TAA
118101106 TATGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
23 4 0.17
24 10 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAAATAATATAATAATATTAA
Found at i:118101107 original size:21 final size:21
Alignment explanation
Indices: 118101044--118101107 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
118101034 TAATCATTAG
*
118101044 TAGTAATAATACTTTAAAAATAA
1 TAGTAATAATA--TTAATAATAA
118101067 T--TAAT-ATATTAATAAAAATAA
1 TAGTAATAATATTAAT---AATAA
118101088 TAGTAATAATATTAATAATA
1 TAGTAATAATATTAATAATA
118101108 TGTAAAAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
18 4 0.12
20 3 0.09
21 14 0.41
23 5 0.15
24 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (21 bp):
TAGTAATAATATTAATAATAA
Found at i:118101731 original size:9 final size:8
Alignment explanation
Indices: 118101710--118101739 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
118101700 AAAAATTTTT
118101710 TTTTTATA
1 TTTTTATA
118101718 TTTTTATA
1 TTTTTATA
118101726 TGTTTTATA
1 T-TTTTATA
118101735 TTTTT
1 TTTTT
118101740 GCACTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTATA
Found at i:118102449 original size:31 final size:31
Alignment explanation
Indices: 118102414--118102478 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
118102404 TTGATTGCAA
118102414 TTGATATAGTATGTTAGCAAGTCTCAATTTC
1 TTGATATAGTATGTTAGCAAGTCTCAATTTC
118102445 TTGATATAGTATGTTAGCAAGTCTCAATTTC
1 TTGATATAGTATGTTAGCAAGTCTCAATTTC
118102476 TTG
1 TTG
118102479 TAAATTGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (31 bp):
TTGATATAGTATGTTAGCAAGTCTCAATTTC
Found at i:118118109 original size:18 final size:17
Alignment explanation
Indices: 118118083--118118127 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
118118073 TTTGAGATTC
*
118118083 AAAACTCAAAATCCAAA
1 AAAACTCAAAACCCAAA
*
118118100 GAAAATTCAAAACCCAAA
1 -AAAACTCAAAACCCAAA
118118118 AAAAC-CAAAA
1 AAAACTCAAAA
118118128 TTCAAAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 5 0.21
17 4 0.17
18 15 0.62
ACGTcount: A:0.67, C:0.22, G:0.02, T:0.09
Consensus pattern (17 bp):
AAAACTCAAAACCCAAA
Found at i:118119915 original size:15 final size:15
Alignment explanation
Indices: 118119895--118119972 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
118119885 TTTATGGAAA
118119895 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
118119910 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
118119924 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
118119940 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
118119954 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
118119970 ATC
1 ATC
118119973 GAGATATTGG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:118119932 original size:30 final size:30
Alignment explanation
Indices: 118119891--118119972 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
118119881 CATATTTATG
*
118119891 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
118119921 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
118119951 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
118119973 GAGATATTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:118124577 original size:15 final size:15
Alignment explanation
Indices: 118124557--118124664 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
118124547 TTTATGGAAA
*
118124557 ATCAAAGATATGGGT
1 ATCAAATATATGGGT
* **
118124572 ATCAAATA-ATAGAA
1 ATCAAATATATGGGT
*
118124586 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
118124602 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
118124616 AGTCAAATATATGAGT
1 A-TCAAATATATGGGT
**
118124632 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
118124646 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
118124662 ATC
1 ATC
118124665 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 11 0.16
15 45 0.67
16 11 0.16
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:118124594 original size:30 final size:30
Alignment explanation
Indices: 118124551--118124674 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
118124541 TCCATATTTA
* *
118124551 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
118124581 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
* *
118124611 TGGAAAGTCAAATATATGAGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
118124641 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
118124672 TGG
1 TGG
118124675 CATAATAAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 76 0.90
31 8 0.10
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:118129307 original size:21 final size:21
Alignment explanation
Indices: 118129281--118129329 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
118129271 TTGAATTTAA
118129281 TTTTTACTTT-TAAAAAAAATC
1 TTTTTA-TTTATAAAAAAAATC
*
118129302 TTTTTATTTATAAAATAAAT-
1 TTTTTATTTATAAAAAAAATC
*
118129322 TTATTATT
1 TTTTTATT
118129330 AAAATATGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTTATTTATAAAAAAAATC
Found at i:118132301 original size:17 final size:17
Alignment explanation
Indices: 118132279--118132315 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
118132269 GGGAACTATG
118132279 ATAATTATTAGTAATTT
1 ATAATTATTAGTAATTT
118132296 ATAATTATTAGTAATTT
1 ATAATTATTAGTAATTT
118132313 ATA
1 ATA
118132316 TATGTAAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
ATAATTATTAGTAATTT
Found at i:118136751 original size:27 final size:25
Alignment explanation
Indices: 118136704--118136753 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
118136694 TTTAAATAAT
**
118136704 TAATATAAATTATTTGTAAAATTAA
1 TAATATAAAAAATTTGTAAAATTAA
118136729 TAATATAAAAAATATTGTTAAAATT
1 TAATATAAAAAAT-TTG-TAAAATT
118136754 TTAAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 3 0.14
27 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
TAATATAAAAAATTTGTAAAATTAA
Found at i:118136773 original size:30 final size:27
Alignment explanation
Indices: 118136725--118136793 Score: 70
Period size: 30 Copynumber: 2.4 Consensus size: 27
118136715 ATTTGTAAAA
118136725 TTAATA-ATATAAAAAATATTGTTAAA-ATT
1 TTAATATA-ATAAAAAATA-T-TTAAATA-T
*
118136754 TTAAATATAATAAATAATATTTAAATAT
1 TT-AATATAATAAAAAATATTTAAATAT
118136782 TTAATATAATAA
1 TTAATATAATAA
118136794 TATATAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 10 0.28
28 8 0.22
29 4 0.11
30 13 0.36
31 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (27 bp):
TTAATATAATAAAAAATATTTAAATAT
Found at i:118136778 original size:20 final size:21
Alignment explanation
Indices: 118136753--118136807 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 21
118136743 TTGTTAAAAT
118136753 TTTAAATATAATA-AATAATA
1 TTTAAATATAATATAATAATA
118136773 TTTAAATATTTAATATAATAATA
1 TTTAAATA--TAATATAATAATA
*
118136796 TATAAAATATAA
1 T-TTAAATATAA
118136808 ATCAATCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.27
22 8 0.27
23 8 0.27
24 6 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTAAATATAATATAATAATA
Found at i:118136779 original size:27 final size:27
Alignment explanation
Indices: 118136729--118136805 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
118136719 GTAAAATTAA
* * *
118136729 TAATATAAAAAATATTGTTAAAAT-TT
1 TAATATAATAAATAATATTAAAATATT
*
118136755 TAAATATAATAAATAATATTTAAATATT
1 T-AATATAATAAATAATATTAAAATATT
118136783 TAATATAAT-AAT-ATA-TAAAATAT
1 TAATATAATAAATAATATTAAAATAT
118136806 AAATCAATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 7 0.16
25 3 0.07
26 4 0.09
27 27 0.61
28 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (27 bp):
TAATATAATAAATAATATTAAAATATT
Found at i:118151915 original size:11 final size:11
Alignment explanation
Indices: 118151901--118151965 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
118151891 ATATTGAAAC
118151901 AATAAAATAAT
1 AATAAAATAAT
*
118151912 AATAATATAAT
1 AATAAAATAAT
* **
118151923 ATTAAAATGGT
1 AATAAAATAAT
**
118151934 AATAAAATAGG
1 AATAAAATAAT
*
118151945 AAGAAAATAAT
1 AATAAAATAAT
*
118151956 AAGAAAATAA
1 AATAAAATAA
118151966 CATTTAAAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 43 1.00
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:118151924 original size:30 final size:30
Alignment explanation
Indices: 118151868--118151925 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
118151858 AAACAAAATG
* * *
118151868 AACAATAAAATGATATTTATACAATATTGA
1 AACAATAAAATAATAATAATACAATATTGA
*
118151898 AACAATAAAATAATAATAATATAATATT
1 AACAATAAAATAATAATAATACAATATT
118151926 AAAATGGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (30 bp):
AACAATAAAATAATAATAATACAATATTGA
Found at i:118155983 original size:17 final size:18
Alignment explanation
Indices: 118155961--118155997 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
118155951 TAATAAAAAT
118155961 ATAA-TTATATTATTT-TA
1 ATAATTTATA-TATTTGTA
118155978 ATAATTTATATATTTGTA
1 ATAATTTATATATTTGTA
118155996 AT
1 AT
118155998 TTTTAAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATAATTTATATATTTGTA
Found at i:118159630 original size:3 final size:3
Alignment explanation
Indices: 118159622--118159646 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
118159612 TTCATCTTCA
118159622 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
118159647 AAAGAGTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:118160474 original size:11 final size:11
Alignment explanation
Indices: 118160458--118160484 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
118160448 ATAAAAATCC
118160458 ATTAATTAAAT
1 ATTAATTAAAT
118160469 ATTAATTAAAT
1 ATTAATTAAAT
118160480 ATTAA
1 ATTAA
118160485 ACACTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTAATTAAAT
Found at i:118167132 original size:31 final size:30
Alignment explanation
Indices: 118167097--118167187 Score: 87
Period size: 31 Copynumber: 3.0 Consensus size: 30
118167087 TATTTCTTTA
118167097 AATGTGTACAACTGAATCAAAATCAAAGTTT
1 AATGTGTACAA-TGAATCAAAATCAAAGTTT
* *
118167128 AATGTGTACATTTGAACCAAAAGT-AAAGTTT
1 AATGTGTACA-ATGAATCAAAA-TCAAAGTTT
* * *
118167159 CATGTGTATAATTACATC-AAATCAAAGTT
1 AATGTGTACAATGA-ATCAAAATCAAAGTT
118167188 CATATATTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
29 1 0.02
30 11 0.22
31 36 0.73
32 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (30 bp):
AATGTGTACAATGAATCAAAATCAAAGTTT
Found at i:118169929 original size:18 final size:19
Alignment explanation
Indices: 118169893--118169930 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
118169883 TTTTAATTTC
*
118169893 TATTCCTGAATACTTTGTT
1 TATTCATGAATACTTTGTT
118169912 TATTCATGAATA-TTTGTT
1 TATTCATGAATACTTTGTT
118169930 T
1 T
118169931 CCTTGAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.55
Consensus pattern (19 bp):
TATTCATGAATACTTTGTT
Found at i:118175549 original size:56 final size:56
Alignment explanation
Indices: 118175489--118175603 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
118175479 AAGTGTGGGT
*
118175489 TTTGAAATTAGGACATGTAATGGAAGAGCAACAGTTATTTATCCATTAACAGGCTC
1 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
118175545 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
1 TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
118175601 TTT
1 TTT
118175604 AATGGTTTCT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (56 bp):
TTTGAAATTAGGACATGTAATGGAAGAACAACAGTTATTTATCCATTAACAGGCTC
Found at i:118184948 original size:18 final size:18
Alignment explanation
Indices: 118184924--118184969 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
118184914 TTATAAATAG
*
118184924 TATTATTTTCATATATCCT
1 TATTATTTTCAT-TATACT
118184943 TA-TATTTATCATTATACT
1 TATTATTT-TCATTATACT
118184961 TATTATTTT
1 TATTATTTT
118184970 ATCCTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTATTTTCATTATACT
Found at i:118193799 original size:3 final size:3
Alignment explanation
Indices: 118193793--118193820 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
118193783 ATAATAATAC
118193793 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
118193821 AGTCTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:118198502 original size:42 final size:42
Alignment explanation
Indices: 118198435--118198522 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
118198425 GGTCTTCAAT
*
118198435 ATAATAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
1 ATAACAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
*
118198477 ATAACAATAATAATAATAATTAGTACTAGACAAAGATGAGTA
1 ATAACAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
118198519 ATAA
1 ATAA
118198523 TAGCTAGGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (42 bp):
ATAACAATAATAATAATAATAAGTACTAGACAAAGATGAGTA
Found at i:118207268 original size:18 final size:18
Alignment explanation
Indices: 118207234--118207270 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
118207224 TGAATTTTCG
**
118207234 AATTCAAATAATTCGAAT
1 AATTCAAATAAACCGAAT
118207252 AATTCAAATAAACCGAAT
1 AATTCAAATAAACCGAAT
118207270 A
1 A
118207271 TAAATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:118207323 original size:24 final size:23
Alignment explanation
Indices: 118207287--118207332 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
118207277 ATATATTTTT
**
118207287 TTAATTTTTTTAATAGACTTTTAC
1 TTAATTTAATTAA-AGACTTTTAC
*
118207311 TTAATTTAATTAAAGTCTTTTA
1 TTAATTTAATTAAAGACTTTTA
118207333 ACCCAATTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
TTAATTTAATTAAAGACTTTTAC
Found at i:118208029 original size:17 final size:17
Alignment explanation
Indices: 118208007--118208058 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
118207997 AATTTCCCAA
118208007 AGTAATAATGTAATATT
1 AGTAATAATGTAATATT
*
118208024 AGTAATAATATAATATT
1 AGTAATAATGTAATATT
* **
118208041 ATTAATACCGTAATATT
1 AGTAATAATGTAATATT
118208058 A
1 A
118208059 ATAGAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (17 bp):
AGTAATAATGTAATATT
Found at i:118208369 original size:99 final size:98
Alignment explanation
Indices: 118208259--118208555 Score: 430
Period size: 92 Copynumber: 3.1 Consensus size: 98
118208249 TATGCTGTTG
* * * *
118208259 TATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAACTATAGGTTAATATACTATTTTT
1 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGCTTAACATACT-TTTTT
118208324 TTTTGTTTAATTTATGCCGTTGTACTTGTACTAT
65 TTTTGTTTAATTTATGCCGTTGTACTTGTACTAT
* * *
118208358 TATATTAATTTAGGCTTCAATTAACTAATTTTAAATTTTAAACGGTAGCTTAACAAACTTTTTTT
1 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGCTTAACATACTTTTTTT
118208423 TTTGTTTAATTTATG-C----TA-TTGTACTAT
66 TTTGTTTAATTTATGCCGTTGTACTTGTACTAT
* *
118208450 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAAATGTAGTTTAACATAC--TTTTT
1 TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGCTTAACATACTTTTTTT
* *
118208513 TTTGTTTAATTTATGCTGTTGTACCTGTACTAT
66 TTTGTTTAATTTATGCCGTTGTACTTGTACTAT
118208546 TATATTAATT
1 TATATTAATT
118208556 AATTTTTAAT
Statistics
Matches: 178, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
90 20 0.11
92 62 0.35
93 2 0.01
95 2 0.01
96 18 0.10
97 1 0.01
98 21 0.12
99 52 0.29
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.50
Consensus pattern (98 bp):
TATATTAATTTAGGCTTCAATTAACTAATTTTAAAGTTTAAACTGTAGCTTAACATACTTTTTTT
TTTGTTTAATTTATGCCGTTGTACTTGTACTAT
Found at i:118209716 original size:100 final size:94
Alignment explanation
Indices: 118209437--118209729 Score: 389
Period size: 90 Copynumber: 3.1 Consensus size: 94
118209427 ATTAAAAATT
* *
118209437 AATTAATATAATAGTACAAGTACAGCAGCATAAATTAAACAAAAAAAAGTATGTTAAACTACATT
1 AATTAATATAATAGTACAAGTACAAC-GCATAAATTAAACAAAAAAAAGTATGTTAAACTACA-G
*
118209502 TTAAACTTTAAAGTTAGTTAATTGAAGCCTA
64 TTAAAATTTAAAGTTAGTTAATTGAAGCCTA
* * * *
118209533 AATTAATATAATAGTACAA-T---A-GTATAAATTAAACAAAAAAAAGTTTGTTAAGCTACCGTT
1 AATTAATATAATAGTACAAGTACAACGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAG-T
118209593 TAAAATTTAAAGTTAGTTAATTGAAGCCTA
65 TAAAATTTAAAGTTAGTTAATTGAAGCCTA
118209623 AATTAATATAATAGTACAAGTACAACGGCATAAATTAAACAAAAAAAAAATAGTATGTTAAACTA
1 AATTAATATAATAGTACAAGTACAAC-GCATAAATTAAAC---AAAAAAA-AGTATGTTAAACTA
* *
118209688 TAGTTAAAGTTTTAAAGTTAGTTAATTGAAGCCTA
61 CAGTTAAA-ATTTAAAGTTAGTTAATTGAAGCCTA
118209723 AATTAAT
1 AATTAAT
118209730 GTACAACAGC
Statistics
Matches: 172, Mismatches: 13, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
90 81 0.47
91 1 0.01
94 1 0.01
95 1 0.01
96 31 0.18
99 12 0.07
100 45 0.26
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (94 bp):
AATTAATATAATAGTACAAGTACAACGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTT
AAAATTTAAAGTTAGTTAATTGAAGCCTA
Found at i:118209954 original size:17 final size:17
Alignment explanation
Indices: 118209932--118209983 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
118209922 TTTTCTCTAT
*
118209932 TAATATTACGTTATTAC
1 TAATATTACATTATTAC
*
118209949 TAATATTATATTATTAC
1 TAATATTACATTATTAC
118209966 TAATATTACATTATTAC
1 TAATATTACATTATTAC
118209983 T
1 T
118209984 TTGGGAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (17 bp):
TAATATTACATTATTAC
Found at i:118217734 original size:16 final size:16
Alignment explanation
Indices: 118217713--118217745 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
118217703 ACATAGCAAT
118217713 AGCGGCGTTTTACCAA
1 AGCGGCGTTTTACCAA
118217729 AGCGGCGTTTTACCAA
1 AGCGGCGTTTTACCAA
118217745 A
1 A
118217746 AACGCCGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (16 bp):
AGCGGCGTTTTACCAA
Found at i:118217796 original size:41 final size:42
Alignment explanation
Indices: 118217743--118218045 Score: 293
Period size: 41 Copynumber: 7.4 Consensus size: 42
118217733 GCGTTTTACC
* *
118217743 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTAGTA
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
* * * *
118217784 AAAAACACCGCTAAAAAGCAGAGCAATAGCGGCGCATTTGGT-
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTTGTA
118217826 -AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAGT-
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-GTA
* * ** *
118217867 -AAAACGCCACTAAAAACTAGAGCATTAGCTACGCTTTTG-G
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
* * *
118217907 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCTCTTTTG-G
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
* * * *
118217948 AAAAATGCCGCTAAAAATCAAAGCATTAGCGGCACTTTTG-A
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
* * * * * *
118217989 TAAAATGCCGCTAAAAACCAAAACACTAGTGGCGC-TTT-TA
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
118218029 GAAAAACGCCGCTAAAA
1 -AAAAACGCCGCTAAAA
118218046 GTCATATAAC
Statistics
Matches: 227, Mismatches: 28, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
40 8 0.04
41 197 0.87
42 17 0.07
43 5 0.02
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGTA
Found at i:118217836 original size:82 final size:82
Alignment explanation
Indices: 118217744--118218045 Score: 328
Period size: 82 Copynumber: 3.7 Consensus size: 82
118217734 CGTTTTACCA
* *
118217744 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTAGTAAAAAACACCGCTAAAAAGCAGAGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTAAAAAACGCCGCTAAAAA-CAGAGC
* *
118217808 AATAGCGGCGCATTTGGT
65 ATTAGCGGCGCTTTTGGT
*
118217826 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAGT--AAAACGCCACTAAAAACTAGAG
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTAGTAAAAAACGCCGCTAAAAAC-AGAG
** *
118217889 CATTAGCTACGCTTTTGGA
64 CATTAGCGGCGCTTTTGGT
* * * * * *
118217908 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCTCTTTTG-GAAAAATGCCGCTAAAAATCAAAGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTAAAAAACGCCGCTAAAAA-CAGAGC
* *
118217972 ATTAGCGGCACTTTTGAT
65 ATTAGCGGCGCTTTTGGT
* * * * *
118217990 AAAATGCCGCTAAAAACCAAAACACTAGTGGCGCTTT--TAGAAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTA-AAAAACGCCGCTAAAA
118218046 GTCATATAAC
Statistics
Matches: 184, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
81 5 0.03
82 156 0.85
83 17 0.09
84 6 0.03
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (82 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGTAAAAAACGCCGCTAAAAACAGAGCA
TTAGCGGCGCTTTTGGT
Found at i:118217958 original size:123 final size:122
Alignment explanation
Indices: 118217744--118218045 Score: 349
Period size: 123 Copynumber: 2.5 Consensus size: 122
118217734 CGTTTTACCA
* * * *
118217744 AAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTAGTAAAAAACACCGCTAAAAAGCAGAGCA
1 AAAACGCCGCTAAAAACAGAGCAATAGCTGCGCTTTTG-GAAAAACGCCGCTAAAAAGCAGAGCA
* * *
118217809 ATAGCGGCGCATTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-AGT
65 ATAGCGGCGCATTTGGAAAAACGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGA-T
* * *
118217867 AAAACGCCACTAAAAACTAGAGCATTAGCTACGCTTTTGGAAAAACGCCGCTAAAAA-CTAGAGC
1 AAAACGCCGCTAAAAAC-AGAGCAATAGCTGCGCTTTTGGAAAAACGCCGCTAAAAAGC-AGAGC
* * * * *
118217931 ATTAGCGGCTCTTTTGGAAAAATGCCGCTAAAAATCAAAGCATTAGCGGCACTTTTGAT
64 AATAGCGGCGCATTTGGAAAAACGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGAT
* * * * *
118217990 AAAATGCCGCTAAAAACCAAAACACTAG-TGGCGCTTTTAGAAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAA-CAGAGCAATAGCT-GCGCTTTTGGAAAAACGCCGCTAAAA
118218046 GTCATATAAC
Statistics
Matches: 152, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
122 2 0.01
123 131 0.86
124 19 0.12
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (122 bp):
AAAACGCCGCTAAAAACAGAGCAATAGCTGCGCTTTTGGAAAAACGCCGCTAAAAAGCAGAGCAA
TAGCGGCGCATTTGGAAAAACGCCGCTAAAAACCAAAGCATTAGCGGCACTTTTGAT
Found at i:118218224 original size:14 final size:14
Alignment explanation
Indices: 118218202--118218295 Score: 52
Period size: 14 Copynumber: 6.7 Consensus size: 14
118218192 TTAATTATCA
*
118218202 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
118218216 TTATGGTTTAAGATGGT
1 TTATGGTTT-A-A-GGT
* *
118218233 TTAGGGTTTAGGGT
1 TTATGGTTTAAGGT
118218247 TTATGAG-TTAA---
1 TTATG-GTTTAAGGT
* *
118218258 ATATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
118218272 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
118218286 TTAAGGTTTA
1 TTATGGTTTA
118218296 GGAGTTAACT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
10 1 0.02
11 8 0.13
14 38 0.61
15 2 0.03
16 2 0.03
17 11 0.18
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:118218280 original size:32 final size:31
Alignment explanation
Indices: 118218213--118218286 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 31
118218203 TATAGTTTAA
* * * *
118218213 GGTTTATGGTTTAAGATGGTTTAGGGTTTAG
1 GGTTTATGGTTAAAGATGGTTTAAGATATAG
* *
118218244 GGTTTATGAGTTAAATATGGTTTAAGATATAT
1 GGTTTATG-GTTAAAGATGGTTTAAGATATAG
*
118218276 GGTTTAGGGTT
1 GGTTTATGGTT
118218287 TAAGGTTTAG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
31 11 0.31
32 24 0.69
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (31 bp):
GGTTTATGGTTAAAGATGGTTTAAGATATAG
Found at i:118218362 original size:7 final size:7
Alignment explanation
Indices: 118218350--118218460 Score: 61
Period size: 7 Copynumber: 15.7 Consensus size: 7
118218340 GGGATTATGA
118218350 TTTAGGG
1 TTTAGGG
118218357 TTTAGGG
1 TTTAGGG
118218364 -TTAGGG
1 TTTAGGG
118218370 -TT-GGAG
1 TTTAGG-G
*
118218376 TTTAAGG
1 TTTAGGG
*
118218383 TGTAAGGG
1 T-TTAGGG
118218391 TTT-GGTG
1 TTTAGG-G
*
118218398 TTAAGGG
1 TTTAGGG
*
118218405 TTAAGGG
1 TTTAGGG
*
118218412 TTTAGTG
1 TTTAGGG
*
118218419 TTTAGTG
1 TTTAGGG
118218426 TTTATGGG
1 TTTA-GGG
*
118218434 -ATAGGGG
1 TTTA-GGG
*
118218441 TTAAGAGG
1 TTTAG-GG
118218449 TTTAGGG
1 TTTAGGG
118218456 TTTAG
1 TTTAG
118218461 ATTAATTAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 18
0.73 0.12 0.16
Matches are distributed among these distances:
5 2 0.02
6 11 0.13
7 52 0.63
8 17 0.21
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.40
Consensus pattern (7 bp):
TTTAGGG
Found at i:118224888 original size:13 final size:13
Alignment explanation
Indices: 118224870--118224900 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
118224860 TAAATCAAAC
118224870 AAAAAAAACACGAA
1 AAAAAAAAC-CGAA
118224884 AAAAAAAACCGAA
1 AAAAAAAACCGAA
118224897 AAAA
1 AAAA
118224901 TATGGTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.81, C:0.13, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAACCGAA
Found at i:118227591 original size:21 final size:22
Alignment explanation
Indices: 118227567--118227607 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
118227557 CTTCAATTTT
*
118227567 TGAAAATTTTCATTA-ATCTCA
1 TGAAAATTTTAATTAGATCTCA
118227588 TGAAAATTTTAATTAGATCT
1 TGAAAATTTTAATTAGATCT
118227608 TCAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (22 bp):
TGAAAATTTTAATTAGATCTCA
Found at i:118239153 original size:17 final size:17
Alignment explanation
Indices: 118239128--118239168 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
118239118 AACGAAAGAG
* *
118239128 AGAAGAAAAAGGAAAAA
1 AGAAAAAAAAAGAAAAA
118239145 AGAAAAAAAAAGAAAAA
1 AGAAAAAAAAAGAAAAA
118239162 AGAAAAA
1 AGAAAAA
118239169 GGAAGGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAAAGAAAAA
Found at i:118251097 original size:39 final size:40
Alignment explanation
Indices: 118251054--118251137 Score: 95
Period size: 39 Copynumber: 2.1 Consensus size: 40
118251044 TGATTTATTG
118251054 TTTTTAATAATTAAAATA-TATAAA-ATTA-ATTCATATTAT
1 TTTTTAATAATTAAAA-ACTA-AAATATTATATTCATATTAT
* * *
118251093 TTTTT-ATATTTAAAAACTAAAATATTATTTTCATTTTAT
1 TTTTTAATAATTAAAAACTAAAATATTATATTCATATTAT
118251132 TTTTTA
1 TTTTTA
118251138 TATTTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
37 4 0.11
38 15 0.39
39 19 0.50
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (40 bp):
TTTTTAATAATTAAAAACTAAAATATTATATTCATATTAT
Found at i:118256421 original size:21 final size:21
Alignment explanation
Indices: 118256395--118256435 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
118256385 AGACGAGCAA
* *
118256395 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
118256416 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
118256436 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:118269464 original size:23 final size:22
Alignment explanation
Indices: 118269430--118269475 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
118269420 TAACCAAACC
118269430 AATTCAACATATTT-TCAAGATA
1 AATTCAACATATTTAT-AAGATA
118269452 AATTCATACATATTTATAAGATA
1 AATTCA-ACATATTTATAAGATA
118269475 A
1 A
118269476 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (22 bp):
AATTCAACATATTTATAAGATA
Found at i:118269481 original size:23 final size:24
Alignment explanation
Indices: 118269436--118269487 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
118269426 AACCAATTCA
*
118269436 ACATATTTTCAAGATAAATTCAT-
1 ACATATTTTCAAGATAAAGTCATC
*
118269459 ACATATTTAT-AAGATAACGTCATC
1 ACATATTT-TCAAGATAAAGTCATC
118269483 ACATA
1 ACATA
118269488 CCCAAAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (24 bp):
ACATATTTTCAAGATAAAGTCATC
Found at i:118271800 original size:16 final size:15
Alignment explanation
Indices: 118271781--118271827 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
118271771 AAAGTGATAA
118271781 AAAAAGTACAAAAAAT
1 AAAAA-TACAAAAAAT
118271797 -AAAATACGAAAAAAAT
1 AAAAATAC--AAAAAAT
*
118271813 AAAAATAAAAAAAAT
1 AAAAATACAAAAAAT
118271828 TCTGTGGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 3 0.11
15 11 0.41
16 7 0.26
17 6 0.22
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (15 bp):
AAAAATACAAAAAAT
Found at i:118284707 original size:23 final size:23
Alignment explanation
Indices: 118284664--118284707 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
118284654 CCAATTCAAC
*
118284664 ATATTTTCAAGATAAATTCATGT
1 ATATTTTCAAGATAAAGTCATGT
*
118284687 ATATTTAT-AAGATAACGTCAT
1 ATATTT-TCAAGATAAAGTCAT
118284708 CACATACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (23 bp):
ATATTTTCAAGATAAAGTCATGT
Found at i:118312634 original size:11 final size:11
Alignment explanation
Indices: 118312618--118312655 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
118312608 AACTCAAGTT
118312618 TAATTTTTAGA
1 TAATTTTTAGA
118312629 TAATTTTTTAGA
1 TAA-TTTTTAGA
*
118312641 TAATTTTTATA
1 TAATTTTTAGA
118312652 TAAT
1 TAAT
118312656 ACAGTAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (11 bp):
TAATTTTTAGA
Found at i:118312638 original size:12 final size:12
Alignment explanation
Indices: 118312621--118312648 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
118312611 TCAAGTTTAA
118312621 TTTTTAGATAAT
1 TTTTTAGATAAT
118312633 TTTTTAGATAAT
1 TTTTTAGATAAT
118312645 TTTT
1 TTTT
118312649 ATATAATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (12 bp):
TTTTTAGATAAT
Found at i:118312867 original size:19 final size:20
Alignment explanation
Indices: 118312823--118312873 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
118312813 CAATATCCAA
118312823 ATAATAATAACAAAATAAATG
1 ATAAT-ATAACAAAATAAATG
* *
118312844 -CAATATAACAATA-AAATG
1 ATAATATAACAAAATAAATG
*
118312862 ATAATAAAACAA
1 ATAATATAACAA
118312874 CAACAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 5 0.20
19 17 0.68
20 3 0.12
ACGTcount: A:0.67, C:0.08, G:0.04, T:0.22
Consensus pattern (20 bp):
ATAATATAACAAAATAAATG
Found at i:118312875 original size:22 final size:22
Alignment explanation
Indices: 118312850--118312897 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
118312840 AATGCAATAT
* *
118312850 AACAATAAAAT-GATAATAAAAC
1 AACAACAAAATAG-TAACAAAAC
118312872 AACAACAAAATAGTAACAAAAC
1 AACAACAAAATAGTAACAAAAC
118312894 AACA
1 AACA
118312898 GGAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.69, C:0.15, G:0.04, T:0.12
Consensus pattern (22 bp):
AACAACAAAATAGTAACAAAAC
Found at i:118313633 original size:17 final size:17
Alignment explanation
Indices: 118313611--118313644 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
118313601 ATCCACTAAT
*
118313611 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
118313628 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
118313645 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:118318273 original size:17 final size:17
Alignment explanation
Indices: 118318251--118318284 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
118318241 ATCCACTAAT
*
118318251 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
118318268 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
118318285 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:118319464 original size:18 final size:18
Alignment explanation
Indices: 118319443--118319557 Score: 66
Period size: 19 Copynumber: 6.6 Consensus size: 18
118319433 AAAAAATTAT
118319443 AAATTATAAATTTTATAA
1 AAATTATAAATTTTATAA
*
118319461 AAATTATTAAATTTTA-ATG
1 AAATTA-TAAATTTTATA-A
*
118319480 AAA--ATACA----ATAA
1 AAATTATAAATTTTATAA
*
118319492 AAATT-TAAAATTTATTAA
1 AAATTATAAATTTTA-TAA
* *
118319510 AAATTAGAATTTTTTATAA
1 AAATTATAA-ATTTTATAA
*
118319529 AAATCATAAAATTTTATAA
1 AAATTAT-AAATTTTATAA
*
118319548 AAATCATAAA
1 AAATTATAAA
118319558 AAATAATAAC
Statistics
Matches: 74, Mismatches: 10, Indels: 26
0.67 0.09 0.24
Matches are distributed among these distances:
12 4 0.05
13 4 0.05
16 3 0.04
17 2 0.03
18 18 0.24
19 37 0.50
20 6 0.08
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATTATAAATTTTATAA
Found at i:118319566 original size:19 final size:19
Alignment explanation
Indices: 118319525--118319566 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
118319515 AGAATTTTTT
** *
118319525 ATAAAAATCATAAAATTTT
1 ATAAAAATCATAAAAAATA
118319544 ATAAAAATCATAAAAAATA
1 ATAAAAATCATAAAAAATA
118319563 ATAA
1 ATAA
118319567 CCCCTAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAAAATCATAAAAAATA
Found at i:118319782 original size:55 final size:55
Alignment explanation
Indices: 118319719--118319825 Score: 146
Period size: 55 Copynumber: 1.9 Consensus size: 55
118319709 ATTTACGAAA
*
118319719 TTTATATTTCTTTACATTTTGTATAA-TTTTCTTACGA-CTTTATAAAATTTTATTT
1 TTTATATTTCTATACA-TTT-TATAATTTTTCTTACGATCTTTATAAAATTTTATTT
* * *
118319774 TTTATATTTCTATATATTTTATAATTTTTTTTACGATTTTTATAAAATTTTA
1 TTTATATTTCTATACATTTTATAATTTTTCTTACGATCTTTATAAAATTTTA
118319826 CAATCTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 5 0.11
54 13 0.28
55 28 0.61
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.62
Consensus pattern (55 bp):
TTTATATTTCTATACATTTTATAATTTTTCTTACGATCTTTATAAAATTTTATTT
Found at i:118319859 original size:8 final size:9
Alignment explanation
Indices: 118319772--118319871 Score: 53
Period size: 9 Copynumber: 10.7 Consensus size: 9
118319762 AAAATTTTAT
118319772 TTTTTAT-A
1 TTTTTATAA
*
118319780 TTTCTAT-A
1 TTTTTATAA
118319788 TATTTTATAA
1 T-TTTTATAA
*
118319798 TTTTTTTTACGA
1 -TTTTTATA--A
118319810 TTTTTATAAA
1 TTTTTAT-AA
* *
118319820 ATTTTACAA
1 TTTTTATAA
*
118319829 TCTTTTTATAT
1 --TTTTTATAA
*
118319840 TTTTTATGA
1 TTTTTATAA
118319849 TTTTTAT-A
1 TTTTTATAA
*
118319857 TTTTTCTAA
1 TTTTTATAA
118319866 TTTTTA
1 TTTTTA
118319872 ATAAAAGTAG
Statistics
Matches: 70, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
8 15 0.21
9 27 0.39
10 13 0.19
11 13 0.19
12 2 0.03
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:118320669 original size:22 final size:21
Alignment explanation
Indices: 118320644--118320690 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
118320634 ATCAAAACTT
118320644 TTAAATTAGAAAATATAGAATA
1 TTAAATTAGAAAAT-TAGAATA
**
118320666 TTAAAATTATTAAATTAGAATA
1 TT-AAATTAGAAAATTAGAATA
118320688 TTA
1 TTA
118320691 CCTATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 1 0.05
22 11 0.50
23 10 0.45
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (21 bp):
TTAAATTAGAAAATTAGAATA
Found at i:118327158 original size:21 final size:21
Alignment explanation
Indices: 118327133--118327180 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
118327123 CAGAAGGTAG
118327133 CCATTCG-AGCAAACTAACCAT
1 CCATTCGAAG-AAACTAACCAT
118327154 CCATTCGAAGAAACTAACCAT
1 CCATTCGAAGAAACTAACCAT
*
118327175 CTATTC
1 CCATTC
118327181 CTCTAGGCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (21 bp):
CCATTCGAAGAAACTAACCAT
Found at i:118327481 original size:7 final size:7
Alignment explanation
Indices: 118327469--118327495 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
118327459 ATCAACTTAC
118327469 CTCAACA
1 CTCAACA
118327476 CTCAACA
1 CTCAACA
118327483 CTCAACA
1 CTCAACA
118327490 CTCAAC
1 CTCAAC
118327496 CTTTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (7 bp):
CTCAACA
Found at i:118330057 original size:22 final size:23
Alignment explanation
Indices: 118330032--118330083 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 23
118330022 GTTGATTGAA
*
118330032 TAAAAAATT-GTTTAAA-AATATT
1 TAAAAAATTAG-TAAAAGAATATT
*
118330054 T-AAAATTTAGTAAAAGAATATT
1 TAAAAAATTAGTAAAAGAATATT
118330076 TAAAAAAT
1 TAAAAAAT
118330084 ATAAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 10 0.42
22 9 0.38
23 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (23 bp):
TAAAAAATTAGTAAAAGAATATT
Found at i:118330090 original size:22 final size:22
Alignment explanation
Indices: 118330048--118330089 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
118330038 ATTGTTTAAA
**
118330048 AATATTTAAAATTTAGTAAAAG
1 AATATTTAAAAAATAGTAAAAG
118330070 AATATTTAAAAAATA-TAAAA
1 AATATTTAAAAAATAGTAAAA
118330090 AATTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
AATATTTAAAAAATAGTAAAAG
Found at i:118330099 original size:31 final size:32
Alignment explanation
Indices: 118330045--118330122 Score: 79
Period size: 32 Copynumber: 2.4 Consensus size: 32
118330035 AAAATTGTTT
* *
118330045 AAAAATATTTAAAATTTAGTAAAAG-AATATTTA
1 AAAAATA-TAAAAAATTAGTAAAAGAAATA-TTA
*
118330078 AAAAATATAAAAAATTA-TAAAATAAATATTA
1 AAAAATATAAAAAATTAGTAAAAGAAATATTA
*
118330109 AAAATTTATAAAAA
1 AAAA-ATATAAAAA
118330123 TAATTAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
31 12 0.31
32 20 0.51
33 7 0.18
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (32 bp):
AAAAATATAAAAAATTAGTAAAAGAAATATTA
Found at i:118330104 original size:21 final size:22
Alignment explanation
Indices: 118330080--118330121 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
118330070 AATATTTAAA
118330080 AAATA-TAAAAAATTATAAAAT
1 AAATATTAAAAAATTATAAAAT
*
118330101 AAATATTAAAAATTTATAAAA
1 AAATATTAAAAAATTATAAAA
118330122 ATAATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATATTAAAAAATTATAAAAT
Found at i:118330106 original size:32 final size:33
Alignment explanation
Indices: 118330070--118330141 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 33
118330060 TTAGTAAAAG
118330070 AATATTTAAAAA-ATAT-AAAA-AATTATAAAATA
1 AATA-TTAAAAATATATAAAAATAATTA-AAAATA
*
118330102 AATATTAAAAATTTATAAAAATAATTAAAAATA
1 AATATTAAAAATATATAAAAATAATTAAAAATA
118330135 AA-ATTAA
1 AATATTAA
118330142 GTTGTCAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
31 7 0.19
32 12 0.33
33 12 0.33
34 5 0.14
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (33 bp):
AATATTAAAAATATATAAAAATAATTAAAAATA
Found at i:118330123 original size:10 final size:10
Alignment explanation
Indices: 118330076--118330122 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
118330066 AAAGAATATT
118330076 TAAAAAA-TA
1 TAAAAAATTA
118330085 TAAAAAATTA
1 TAAAAAATTA
*
118330095 TAAAATAAATA
1 TAAAA-AATTA
*
118330106 TTAAAAATTTA
1 -TAAAAAATTA
118330117 TAAAAA
1 TAAAAA
118330123 TAATTAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 7 0.22
10 13 0.41
11 7 0.22
12 5 0.16
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:118330759 original size:29 final size:30
Alignment explanation
Indices: 118330727--118330789 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
118330717 AAGAGTTTCT
118330727 AATATATATTT-ATTTTT-TTACAAATTTTA
1 AATATAT-TTTAATTTTTCTTACAAATTTTA
** *
118330756 AATA-ATTTTAATTTTTCTTTTACATTTTA
1 AATATATTTTAATTTTTCTTACAAATTTTA
118330785 AATAT
1 AATAT
118330790 TTTCTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.11
28 8 0.29
29 17 0.61
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (30 bp):
AATATATTTTAATTTTTCTTACAAATTTTA
Found at i:118330794 original size:21 final size:19
Alignment explanation
Indices: 118330760--118330798 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
118330750 ATTTTAAATA
118330760 ATTTTAATTTTTCTTTTAC
1 ATTTTAATTTTTCTTTTAC
118330779 ATTTTAAATATTTTCTTTTA
1 ATTTT-AAT-TTTTCTTTTA
118330799 TAGTTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 10 0.56
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTTAATTTTTCTTTTAC
Found at i:118340290 original size:27 final size:28
Alignment explanation
Indices: 118340250--118340305 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
118340240 GAAATCGTAG
*
118340250 TTTTTAATTTTCTTTTACAAACAAACAA
1 TTTTTAATTCTCTTTTACAAACAAACAA
*
118340278 TTTTT-ATTCTCTTTTACAAGCAAACAA
1 TTTTTAATTCTCTTTTACAAACAAACAA
118340305 T
1 T
118340306 CTCTACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.46
Consensus pattern (28 bp):
TTTTTAATTCTCTTTTACAAACAAACAA
Found at i:118344590 original size:17 final size:17
Alignment explanation
Indices: 118344564--118344597 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
118344554 AGGTTTAGGT
118344564 TTAAAATTTTTAATTAA
1 TTAAAATTTTTAATTAA
*
118344581 TTAAATTTTTTAATTAA
1 TTAAAATTTTTAATTAA
118344598 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAAAATTTTTAATTAA
Found at i:118344758 original size:29 final size:29
Alignment explanation
Indices: 118344725--118344798 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
118344715 ATAAAATAAT
118344725 AACATAAGTGACTAAAACGTAACATT-TCA
1 AACATAAGTGACTAAAACGTAAC-TTGTCA
* *
118344754 AACATAAATGACTAAAATGTAACTTGAGTCA
1 AACATAAGTGACTAAAACGTAACTT--GTCA
*
118344785 AACAAAAGTGACTA
1 AACATAAGTGACTA
118344799 TTTTTATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 2 0.05
29 21 0.55
31 15 0.39
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACTTGTCA
Found at i:118345953 original size:22 final size:23
Alignment explanation
Indices: 118345905--118345963 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
118345895 TATTTTCAAA
*
118345905 AAATATATAATA-TTATTATTTT
1 AAATATAAAATATTTATTATTTT
118345927 AAATATAAAATATTTA-T-TTTT
1 AAATATAAAATATTTATTATTTT
118345948 ACAATATAAAAT-TTTA
1 A-AATATAAAATATTTA
118345964 AATGAAAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
21 9 0.26
22 22 0.65
23 3 0.09
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATATAAAATATTTATTATTTT
Found at i:118347036 original size:12 final size:11
Alignment explanation
Indices: 118347009--118347042 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
118346999 TTTTCAAGTG
118347009 AAAATTAATAA
1 AAAATTAATAA
118347020 AAAATTAATATA
1 AAAATTAATA-A
118347032 AAAATT-ATAA
1 AAAATTAATAA
118347042 A
1 A
118347043 TTATTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.09
11 13 0.59
12 7 0.32
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATTAATAA
Found at i:118352670 original size:6 final size:6
Alignment explanation
Indices: 118352661--118352688 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
118352651 TCTATATTTT
118352661 AAATAA AAATAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAATAA AAATAA AAAT
118352689 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:118352791 original size:16 final size:16
Alignment explanation
Indices: 118352768--118352805 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
118352758 TTTAAAATTT
118352768 TAAA-AATATAAAATA
1 TAAATAATATAAAATA
*
118352783 TAAATAATATTAAATA
1 TAAATAATATAAAATA
118352799 TAAATAA
1 TAAATAA
118352806 AATTCTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAATAATATAAAATA
Found at i:118354008 original size:22 final size:22
Alignment explanation
Indices: 118353978--118354019 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
118353968 CAAAAAAATC
*
118353978 TACTTTTTTATTATTTTTTTAA
1 TACTATTTTATTATTTTTTTAA
* *
118354000 TACTATTTTCTTGTTTTTTT
1 TACTATTTTATTATTTTTTT
118354020 CTCTCTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (22 bp):
TACTATTTTATTATTTTTTTAA
Found at i:118359772 original size:18 final size:18
Alignment explanation
Indices: 118359751--118359785 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
118359741 TACTCTCAAC
118359751 AAAAAAATTT-TAAAAAT
1 AAAAAAATTTATAAAAAT
*
118359768 AAAAATATTTATAAAAAT
1 AAAAAAATTTATAAAAAT
118359786 TTCAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAAAAATTTATAAAAAT
Found at i:118382331 original size:14 final size:14
Alignment explanation
Indices: 118382312--118382339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
118382302 ATAACCAGAC
118382312 GACCCATTACGCTA
1 GACCCATTACGCTA
118382326 GACCCATTACGCTA
1 GACCCATTACGCTA
118382340 TCTCAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.14, T:0.21
Consensus pattern (14 bp):
GACCCATTACGCTA
Done.