Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 359 of 373
Found at i:118983774 original size:15 final size:15
Alignment explanation
Indices: 118983749--118983788 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
118983739 AGTTGTTCCC
118983749 TTTTTCTTTTTTTCTT
1 TTTTTC-TTTTTTCTT
118983765 TTTTTCTTTTTTCTT
1 TTTTTCTTTTTTCTT
*
118983780 TCTTTCTTT
1 TTTTTCTTT
118983789 CTTCATTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTTCTT
Found at i:118983783 original size:4 final size:4
Alignment explanation
Indices: 118983751--118983791 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
118983741 TTGTTCCCTT
* *
118983751 TTTC TTTT TTTC TTTT TTTC TTT- TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
118983792 CATTCCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (4 bp):
TTTC
Found at i:118983937 original size:13 final size:13
Alignment explanation
Indices: 118983919--118983951 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
118983909 TATTATATTG
*
118983919 TTTGTTTGAATTA
1 TTTGTTTCAATTA
118983932 TTTG-TTCAATTA
1 TTTGTTTCAATTA
118983944 TTTGTTTC
1 TTTGTTTC
118983952 TATTTTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.64
Consensus pattern (13 bp):
TTTGTTTCAATTA
Found at i:118986552 original size:43 final size:43
Alignment explanation
Indices: 118986504--118986616 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
118986494 TGACAATTTT
* * *
118986504 AATATTTCGTAAGATGGTAAGCAAATAGCATACGAATAAAACA
1 AATATTTCGTAACATGGTAAACAAATAGCATACAAATAAAACA
** * **
118986547 AATATTTTTTAACATGGTAAATAAATATTATACAAATAAAACA
1 AATATTTCGTAACATGGTAAACAAATAGCATACAAATAAAACA
* *
118986590 AATA-TTCTTTAACACGGTAAACAAATA
1 AATATTTC-GTAACATGGTAAACAAATA
118986617 TTATATCAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.03
43 56 0.97
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.29
Consensus pattern (43 bp):
AATATTTCGTAACATGGTAAACAAATAGCATACAAATAAAACA
Found at i:118986617 original size:43 final size:43
Alignment explanation
Indices: 118986519--118986640 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 43
118986509 TTCGTAAGAT
* ** * * *
118986519 GGTAAGCAAATAGCATACGAATAAAACAAATATTTTTTAACAT
1 GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
*
118986562 GGTAAATAAATATTATACAAATAAAACAAATATTCTTTAACAC
1 GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
* *
118986605 GGTAAACAAATATTATATCAATATTATACAAATATT
1 GGTAAACAAATATTATA-CAA-ATAAAACAAATATT
118986641 GAAGCAATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
43 52 0.78
44 3 0.04
45 12 0.18
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (43 bp):
GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
Found at i:118986648 original size:22 final size:22
Alignment explanation
Indices: 118986610--118986651 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
118986600 AACACGGTAA
*
118986610 ACAAATATTATATCAATATTAT
1 ACAAATATTATAGCAATATTAT
118986632 ACAAATATTGA-AGCAATATT
1 ACAAATATT-ATAGCAATATT
118986652 TTATCAGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (22 bp):
ACAAATATTATAGCAATATTAT
Found at i:118988258 original size:23 final size:23
Alignment explanation
Indices: 118988176--118988262 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
118988166 CCTGATCAAT
*
118988176 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
118988198 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
118988218 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
118988241 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
118988263 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:118988661 original size:15 final size:15
Alignment explanation
Indices: 118988635--118988691 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
118988625 CATATATATT
118988635 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
*
118988649 ATAGAATTTCAATCA
1 ATATAATTTCAATCA
*
118988664 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
118988679 ATATAAATTCAAT
1 ATATAATTTCAAT
118988692 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 5 0.14
15 32 0.86
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:118989022 original size:5 final size:5
Alignment explanation
Indices: 118989014--118989055 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
118989004 TATTTAGTTT
118989014 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
118989056 TAAAACATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:118990239 original size:42 final size:42
Alignment explanation
Indices: 118990176--118990287 Score: 154
Period size: 42 Copynumber: 2.7 Consensus size: 42
118990166 CTTCGTTTTC
** * *
118990176 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
118990219 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
118990260 TCGATGCCATAGCCTAGCTATGGTCTTA
1 TCGATGCCATAGCCCAGCTATGGTCTTA
118990288 TACGAATCAC
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:118990363 original size:47 final size:46
Alignment explanation
Indices: 118990261--118990384 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
118990251 ATTCATATAT
* * * * *
118990261 CGATGCCATAGCCTAGCTATGGTCTTATACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
** * *
118990307 TAATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
118990354 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
118990385 GAAATCACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:118990445 original size:31 final size:31
Alignment explanation
Indices: 118990409--118990588 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
118990399 CTTGTCACTT
*
118990409 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
118990440 ATAGCCGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
118990471 GTAGCCGGAGCTACCACTTTTCGCTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
118990502 GTAGCTGGAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CGAAGCTACCACTTTTCACTGATCAG
*
118990533 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
118990564 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
118990589 TGTCATTTGT
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
30 3 0.02
31 128 0.96
32 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:118990670 original size:50 final size:51
Alignment explanation
Indices: 118990564--118990692 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
118990554 CACTGATCAG
* * *
118990564 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
118990615 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
118990665 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
118990693 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:119000133 original size:10 final size:11
Alignment explanation
Indices: 119000108--119000132 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
119000098 TGTTTGATAA
119000108 TTTTAATTATT
1 TTTTAATTATT
119000119 TTTTAATTATT
1 TTTTAATTATT
119000130 TTT
1 TTT
119000133 ATCCTATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTAATTATT
Found at i:119000593 original size:3 final size:3
Alignment explanation
Indices: 119000585--119000609 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
119000575 TCCCACCATA
119000585 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
119000610 TGTTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:119009775 original size:31 final size:31
Alignment explanation
Indices: 119009713--119009776 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
119009703 AAAAACCAAC
* * * **
119009713 AAATTGACTCTTTTTTAAAGGTAGATGGTCA
1 AAATCGACTCTTTTTAAAAGATAGAAAGTCA
119009744 AAATCGACTCTTTTTAAAAGATAGAAAGTCA
1 AAATCGACTCTTTTTAAAAGATAGAAAGTCA
119009775 AA
1 AA
119009777 TTTAGCTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (31 bp):
AAATCGACTCTTTTTAAAAGATAGAAAGTCA
Found at i:119014381 original size:23 final size:22
Alignment explanation
Indices: 119014343--119014393 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
119014333 ATTCAAGTAA
*
119014343 TTAATTTATTAAATTGAGTTAT
1 TTAATTAATTAAATTGAGTTAT
119014365 TTAATTAATTTAAATTGAGTTAT
1 TTAATTAA-TTAAATTGAGTTAT
*
119014388 TCAATT
1 TTAATT
119014394 CAGTAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (22 bp):
TTAATTAATTAAATTGAGTTAT
Found at i:119019512 original size:16 final size:17
Alignment explanation
Indices: 119019493--119019525 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
119019483 AAGTCTTACA
119019493 AAAAAAAAAAGA-AAAG
1 AAAAAAAAAAGAGAAAG
*
119019509 AAAAGAAAAAGAGAAAG
1 AAAAAAAAAAGAGAAAG
119019526 TGTTTGCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAGAGAAAG
Found at i:119024735 original size:30 final size:30
Alignment explanation
Indices: 119024701--119024762 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
119024691 TTCGAGCTTC
*
119024701 TTCCAACCGCCCTGCTTTTCTCGGTAAGTT
1 TTCCAACAGCCCTGCTTTTCTCGGTAAGTT
* *
119024731 TTCCAACAGCTCTGCTTTTCTCGTTAAGTT
1 TTCCAACAGCCCTGCTTTTCTCGGTAAGTT
119024761 TT
1 TT
119024763 TCCCTTCGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.42
Consensus pattern (30 bp):
TTCCAACAGCCCTGCTTTTCTCGGTAAGTT
Found at i:119027113 original size:33 final size:34
Alignment explanation
Indices: 119027063--119027126 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
119027053 TGTACTTTAT
*
119027063 TTTATTTTTTTATATATTCTTTA-AAATTTTGAG
1 TTTATTTTTTGATATATTCTTTATAAATTTTGAG
*
119027096 TTTATTTATTTGA-ATATTTTTTATAAATTTT
1 TTTATTT-TTTGATATATTCTTTATAAATTTT
119027127 AAATTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 16 0.59
34 11 0.41
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (34 bp):
TTTATTTTTTGATATATTCTTTATAAATTTTGAG
Found at i:119027806 original size:25 final size:25
Alignment explanation
Indices: 119027774--119027824 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
119027764 TCTTTAATTA
119027774 TTTATGCTTTATTTGTTTTACTCAT
1 TTTATGCTTTATTTGTTTTACTCAT
119027799 TTTATGCTTTATTTGTTTTACTCAT
1 TTTATGCTTTATTTGTTTTACTCAT
119027824 T
1 T
119027825 CTAAAATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.16, C:0.12, G:0.08, T:0.65
Consensus pattern (25 bp):
TTTATGCTTTATTTGTTTTACTCAT
Found at i:119029751 original size:17 final size:18
Alignment explanation
Indices: 119029716--119029754 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
119029706 AAACATAAAC
119029716 TTAAAATTTTATAAATAT
1 TTAAAATTTTATAAATAT
*
119029734 TTAAAATTTTA-CAATAT
1 TTAAAATTTTATAAATAT
119029751 TTAA
1 TTAA
119029755 TATAACTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAATTTTATAAATAT
Found at i:119031304 original size:41 final size:42
Alignment explanation
Indices: 119031240--119031325 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 42
119031230 TTTAAAGTTA
119031240 AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
1 AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
*
119031282 AGTGACTT-AATCGTAAATCTATTAATAGTTTAGTGATCTTT
1 AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
119031323 AGT
1 AGT
119031326 TAGTTTGCCC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 35 0.81
42 8 0.19
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (42 bp):
AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
Found at i:119039879 original size:90 final size:90
Alignment explanation
Indices: 119039410--119039867 Score: 718
Period size: 90 Copynumber: 5.1 Consensus size: 90
119039400 AATGTTTGAA
* * *
119039410 CGTCGCCGTCTTCTCCAAGATGAAGATGGACTTCCGGTTATTGGCCATTCTGATTGGACTTCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
119039475 TTTAGAACGAAACAAGGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* * *
119039500 CGTCGCCGTCTTCTTCAAGACGAAGATGGACTTCCGATTATTGGCCATTCCGACTGGACATCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
119039565 TTTAGAACGAAACAAGGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* * * *
119039590 CGTCGTCGTCTTCTTCAAGACGAAGATAGACTTTCGGTTATTGGCCATTCCGATTGGACATCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
119039655 TTTAGAACGAAACAAGGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* * *
119039680 CGTCACCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTGTCGGCCATTCCGATTGGACATCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
* *
119039745 TTTAGAATGAAACAAAGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* * * *
119039770 CGTCGTCGTCTTCTCCAAGACGAAGATAGACTTCCGGTTATCGGCCATTCCGATTGGACATCATT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
* *
119039835 TTTAGAACGGAACAAGGAATGGAAC
66 TTTAGAACGAAACAAGGAATGGAAT
*
119039860 CGCCGCCG
1 CGTCGCCG
119039868 GATGCTCCAA
Statistics
Matches: 337, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 337 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (90 bp):
CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
TTTAGAACGAAACAAGGAATGGAAT
Found at i:119046454 original size:51 final size:51
Alignment explanation
Indices: 119046394--119046794 Score: 523
Period size: 51 Copynumber: 7.9 Consensus size: 51
119046384 AAAACTGAAG
* * * *
119046394 ACAAAGGGTTGATCCCTACGTCCCTAGATGTTCCCGCTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
*
119046445 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCTGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
119046496 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* * * *
119046547 ACAGTGGGCTCATCCCTACCTCTCCAGATGTTTCCGCTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* * * * *
119046598 ACAGTGGGGTGATCCCTACCTCCCCAAATGTTCCCGTTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* *
119046649 ACAATGGGTTCATCCCTACCTCCCCAGATGTTTCCGTTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* * * * * * *
119046700 ACAGTGGGTTGATCCCTATCTCTCCAGATCTTTCCGCTAGTAAACCTGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* ** * * * * *
119046751 ACAATGGGGTGGTCTCTATCTCCCCAAATCTTTCCGCTAGTAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAA
119046795 GCCGCACACA
Statistics
Matches: 316, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 316 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (51 bp):
ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
Found at i:119046633 original size:153 final size:153
Alignment explanation
Indices: 119046405--119046794 Score: 584
Period size: 153 Copynumber: 2.5 Consensus size: 153
119046395 CAAAGGGTTG
* * * *
119046405 ATCCCTACGTC-CCTAGATGTTCCCGCTAGTAAACCCGAAAACAATGGGTTCATCCCTACCTCCC
1 ATCCCTACCTCTCC-AGATGTTTCCGCTAGTAAACCCGAAAACAATGGGGTGATCCCTACCTCCC
* *
119046469 CAGATGTTCCCGCTAGTAAACCTGAAAACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCT
65 CAAATGTTCCCGCTAGTAAACCCGAAAACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCT
119046534 AGTAAACCCGAAAACAGTGGGCTC
130 AGTAAACCCGAAAACAGTGGGCTC
*
119046558 ATCCCTACCTCTCCAGATGTTTCCGCTAGTAAACCCGAAAACAGTGGGGTGATCCCTACCTCCCC
1 ATCCCTACCTCTCCAGATGTTTCCGCTAGTAAACCCGAAAACAATGGGGTGATCCCTACCTCCCC
* * *
119046623 AAATGTTCCCGTTAGTAAACCCGAAAACAATGGGTTCATCCCTACCTCCCCAGATGTTTCCGTTA
66 AAATGTTCCCGCTAGTAAACCCGAAAACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTA
* *
119046688 GTAAACCCGAAAACAGTGGGTTG
131 GTAAACCCGAAAACAGTGGGCTC
* * * * * *
119046711 ATCCCTATCTCTCCAGATCTTTCCGCTAGTAAACCTGAAAACAATGGGGTGGTCTCTATCTCCCC
1 ATCCCTACCTCTCCAGATGTTTCCGCTAGTAAACCCGAAAACAATGGGGTGATCCCTACCTCCCC
* *
119046776 AAATCTTTCCGCTAGTAAA
66 AAATGTTCCCGCTAGTAAA
119046795 GCCGCACACA
Statistics
Matches: 214, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
153 212 0.99
154 2 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (153 bp):
ATCCCTACCTCTCCAGATGTTTCCGCTAGTAAACCCGAAAACAATGGGGTGATCCCTACCTCCCC
AAATGTTCCCGCTAGTAAACCCGAAAACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTA
GTAAACCCGAAAACAGTGGGCTC
Found at i:119046867 original size:21 final size:21
Alignment explanation
Indices: 119046843--119046890 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
119046833 ACACAAGAAA
119046843 AAGAAGCACCATGGAAAAGGG
1 AAGAAGCACCATGGAAAAGGG
*
119046864 AAGAAGCACCATGGGAAAGGG
1 AAGAAGCACCATGGAAAAGGG
119046885 AAGAAG
1 AAGAAG
119046891 AAAGGGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.48, C:0.12, G:0.35, T:0.04
Consensus pattern (21 bp):
AAGAAGCACCATGGAAAAGGG
Found at i:119053263 original size:17 final size:18
Alignment explanation
Indices: 119053223--119053264 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
119053213 GTTCTTTTAA
* *
119053223 TTAATTATAATTACGTAT
1 TTAAATATAATAACGTAT
119053241 TT-AATATAATAACGT-T
1 TTAAATATAATAACGTAT
119053257 TTAAATAT
1 TTAAATAT
119053265 TTGTATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.14
17 16 0.76
18 2 0.10
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (18 bp):
TTAAATATAATAACGTAT
Found at i:119053725 original size:21 final size:22
Alignment explanation
Indices: 119053686--119053726 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
119053676 AAAAAAATAT
*
119053686 AAAATTGATTGATGAATTAAAA
1 AAAATTGATTAATGAATTAAAA
*
119053708 AAAATTG-TTAATGGATTAA
1 AAAATTGATTAATGAATTAA
119053727 TTTTCCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (22 bp):
AAAATTGATTAATGAATTAAAA
Found at i:119063134 original size:14 final size:14
Alignment explanation
Indices: 119063115--119063142 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
119063105 AAAATATGAC
119063115 CAATATGGTCATTA
1 CAATATGGTCATTA
119063129 CAATATGGTCATTA
1 CAATATGGTCATTA
119063143 TTAGTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
CAATATGGTCATTA
Found at i:119067273 original size:12 final size:12
Alignment explanation
Indices: 119067256--119067280 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119067246 AGAGAAAAAA
119067256 TAATATATTGTC
1 TAATATATTGTC
119067268 TAATATATTGTC
1 TAATATATTGTC
119067280 T
1 T
119067281 TTTGTGTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (12 bp):
TAATATATTGTC
Found at i:119070179 original size:83 final size:81
Alignment explanation
Indices: 119070017--119070388 Score: 274
Period size: 82 Copynumber: 4.5 Consensus size: 81
119070007 AAGCTCGAAT
* * * * * *
119070017 TTAGCAAGTAGTACCCATAAAAGGTGTGTGCTCAAATAATTAGCCAAGTGTCTTAAAAGGTTAGC
1 TTAGCAAGCAGTA-CC-TCAAAGGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAGAGGCTAG-
* * *
119070082 AATG-G-TTCTACTATTAAC
63 AA-GCGATTTTGCTATTAGC
* * *
119070100 TTAGGAAGCAGTACACTCAAAGCGAGTGTGCTCAAATAATTGGTTAAGT-TCCTTAAGAGGCTAG
1 TTAGCAAGCAGTAC-CTCAAAG-GTGTGTGCTCAAATAATTGGCTAAGTGT-CTTAAGAGGCTAG
119070164 AAGC-AGTTTTGCTATTAGC
63 AAGCGA-TTTTGCTATTAGC
* * * * *
119070183 TTCA-CAAGCAG-ATCTTCAAAGGGTGCGTGCCCAACTAATTGGCTAAGTGTCTTAAGAGGCTTG
1 TT-AGCAAGCAGTA-CCTCAAA-GGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAGAGGCTAG
*
119070246 CAGCGATTTTGCTATTAGC
63 AAGCGATTTTGCTATTAGC
* * * *
119070265 TTAGCAAGCAGTACCCTCAAA-GTGTGTTCTCAAATAATTAGCTAAGTGTCTT-AGAAGACTAGC
1 TTAGCAAGCAGTA-CCTCAAAGGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAG-AGGCTAGA
* * * *
119070328 AGTGATTCTACTATTAAC
64 AGCGATTTTGCTATTAGC
* * **
119070346 TTTAGCAAGTAGGACGCTCAAACAATGTGTGCTCAAATAATTG
1 -TTAGCAAGCAGTAC-CTCAAA-GGTGTGTGCTCAAATAATTG
119070389 TTTCAATGCC
Statistics
Matches: 232, Mismatches: 39, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
80 2 0.01
81 49 0.21
82 90 0.39
83 74 0.32
84 17 0.07
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (81 bp):
TTAGCAAGCAGTACCTCAAAGGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAGAGGCTAGAAG
CGATTTTGCTATTAGC
Found at i:119070493 original size:84 final size:84
Alignment explanation
Indices: 119070323--119070509 Score: 214
Period size: 84 Copynumber: 2.2 Consensus size: 84
119070313 TCTTAGAAGA
* * * **
119070323 CTAGCAGTGATTCTACTATTAACTTTAGCAAGTAGGACGCTCAAACAATGTGTGCTCAAATAATT
1 CTAGCAGTGGTTCTACTATTAACTTTAGCAAGTACGACCCTCAAACAATGTGAACTCAAATAATT
*
119070388 GTTTCAATGCCTTCAAAGG
66 GATTCAATGCCTTCAAAGG
* * *
119070407 CTAGCAGTGGTTCTGCTATTAACTTTGGCAAGTACTACCCTCAAAC-ATCGTGAACTCAAATAAT
1 CTAGCAGTGGTTCTACTATTAACTTTAGCAAGTACGACCCTCAAACAAT-GTGAACTCAAATAAT
* * ** *
119070471 TGATTCATTGTCTTGGATGG
65 TGATTCAATGCCTTCAAAGG
* *
119070491 CTAGCAATGGTTTTACTAT
1 CTAGCAGTGGTTCTACTAT
119070510 AACGTAGTGA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
83 2 0.02
84 83 0.98
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (84 bp):
CTAGCAGTGGTTCTACTATTAACTTTAGCAAGTACGACCCTCAAACAATGTGAACTCAAATAATT
GATTCAATGCCTTCAAAGG
Found at i:119081090 original size:21 final size:21
Alignment explanation
Indices: 119081065--119081104 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
119081055 GTATTAAGTC
119081065 AATAAAAATGCA-AAAAATAAT
1 AATAAAAAT-CATAAAAATAAT
*
119081086 AATAAATATCATAAAAATA
1 AATAAAAATCATAAAAATA
119081105 TGTGAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (21 bp):
AATAAAAATCATAAAAATAAT
Found at i:119088262 original size:43 final size:44
Alignment explanation
Indices: 119088214--119088422 Score: 216
Period size: 43 Copynumber: 4.9 Consensus size: 44
119088204 GTTACCGAGA
* *
119088214 TGTGATTACATGTAAGACCAAGTCTGGGACATTGGCATTGTT-T
1 TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
* * * *
119088257 TGTGATTACGTGTAAGACCATGTCTGGGGCATTGACATCATTAT
1 TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
*
119088301 T-CGATTACGTGTAAGACCATA-TCTGGGACATTGGCATCGTTAT
1 TGTGATTACGTGTAAGACCA-AGTCTGGGACATTGGCATCGTTAT
* ** * *
119088344 T-TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATA-
1 TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
* * *
119088386 TGTGATAACATGTAAGACCATA-TCTGGGATA-TGGCAT
1 TGTGATTACGTGTAAGACCA-AGTCTGGGACATTGGCAT
119088423 TGTACGAGCT
Statistics
Matches: 138, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
42 7 0.05
43 129 0.93
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
Found at i:119088367 original size:86 final size:86
Alignment explanation
Indices: 119088213--119088422 Score: 268
Period size: 86 Copynumber: 2.5 Consensus size: 86
119088203 GGTTACCGAG
*
119088213 ATGTGATTACATGTAAGACCA-AGTCTGGGACATTGGCATTGTTTTGTGATTACGTGTAAGACCA
1 ATGTGATTACATGTAAGACCATA-TCTGGGACATTGGCATCGTTTTGTGATTACGTGTAAGACCA
* *
119088277 TGTCTGGGGCATTGACATC-ATT
65 TGTCTGGGACAGTGACATCGA-T
* *
119088299 AT-TCGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTTATT-TGATTTCGTGTAAGACC
1 ATGT-GATTACATGTAAGACCATATCTGGGACATTGGCATCGTT-TTGTGATTACGTGTAAGACC
* *
119088362 CTGTCTGGGACAGTGGCATCGAT
64 ATGTCTGGGACAGTGACATCGAT
* *
119088385 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
119088423 TGTACGAGCT
Statistics
Matches: 109, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
85 7 0.06
86 97 0.89
87 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (86 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTTTTGTGATTACGTGTAAGACCAT
GTCTGGGACAGTGACATCGAT
Found at i:119089843 original size:36 final size:36
Alignment explanation
Indices: 119089769--119089876 Score: 110
Period size: 36 Copynumber: 3.0 Consensus size: 36
119089759 CAATCAGTAA
* * * * * *
119089769 TATTCATTAATAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* * *
119089804 TATTCAGTAACAGTCAGTTATTCGGTAACAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* *
119089840 TATTCAATAATAATCAGTTATTCAGTATCAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
119089876 T
1 T
119089877 GATCGGTTAT
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
35 19 0.32
36 40 0.68
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (36 bp):
TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
Found at i:119089948 original size:19 final size:19
Alignment explanation
Indices: 119089803--119089950 Score: 81
Period size: 18 Copynumber: 7.7 Consensus size: 19
119089793 GAACAATTAT
* *
119089803 TTATTCAGTAACAGTC-AG
1 TTATTCAGTAACAATCAAA
*
119089821 TTATTCGGTAACAATC-AA
1 TTATTCAGTAACAATCAAA
* * *
119089839 TTATTCAATAATAATC-AG
1 TTATTCAGTAACAATCAAA
*
119089857 TTATTCAGTATCAATCAATTGA
1 TTATTCAGTAACAATCAA---A
* *
119089879 TCGGTTATCCAGTAACAGTC-AA
1 ----TTATTCAGTAACAATCAAA
* *
119089901 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
119089920 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
119089938 TTATTCAGTAACA
1 TTATTCAGTAACA
119089951 GTCGATCTTT
Statistics
Matches: 97, Mismatches: 23, Indels: 19
0.70 0.17 0.14
Matches are distributed among these distances:
18 69 0.71
19 13 0.13
22 1 0.01
25 1 0.01
26 13 0.13
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.34
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:119090375 original size:19 final size:20
Alignment explanation
Indices: 119090328--119090375 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
119090318 CACTTTCCAG
*
119090328 TTTTCAATTAATTCATATTT
1 TTTTCAATTAACTCATATTT
*
119090348 TAATT-AATTAACT-ATATTT
1 T-TTTCAATTAACTCATATTT
119090367 TTTTCAATT
1 TTTTCAATT
119090376 CAATATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
18 2 0.09
19 11 0.48
20 8 0.35
21 2 0.09
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTCAATTAACTCATATTT
Found at i:119090418 original size:20 final size:20
Alignment explanation
Indices: 119090388--119090425 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
119090378 ATATAATTCC
119090388 ATTCAATTTTCACTAATAAAT
1 ATTCAATTTTCAC-AATAAAT
119090409 ATTCAA-TTTCACAATAA
1 ATTCAATTTTCACAATAA
119090426 TCACAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTCAATTTTCACAATAAAT
Found at i:119091235 original size:19 final size:19
Alignment explanation
Indices: 119091206--119091242 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
119091196 AAACCTTCAA
119091206 TTTTCCCTTTC-TTCTTTT
1 TTTTCCCTTTCTTTCTTTT
119091224 TTTTCTCCTTTCTTTCTTT
1 TTTTC-CCTTTCTTTCTTT
119091243 CTTTCCCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 6 0.35
20 6 0.35
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTCCCTTTCTTTCTTTT
Found at i:119091247 original size:19 final size:18
Alignment explanation
Indices: 119091207--119091250 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
119091197 AACCTTCAAT
*
119091207 TTTCCCTTTCTTCTTTTT
1 TTTCCCTTTCTTCTTTTC
119091225 TTTCTCCTTTCTT-TCTTTC
1 TTTC-CCTTTCTTCT-TTTC
119091244 TTTCCCT
1 TTTCCCT
119091251 GCTTTTCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTCCCTTTCTTCTTTTC
Found at i:119091454 original size:16 final size:15
Alignment explanation
Indices: 119091445--119091479 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
119091435 TATTTATTAT
119091445 ATAATATATTATTTA
1 ATAATATATTATTTA
*
119091460 ATAATATACTTATATA
1 ATAATATA-TTATTTA
119091476 ATAA
1 ATAA
119091480 GTAAATATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
ATAATATATTATTTA
Found at i:119096302 original size:18 final size:18
Alignment explanation
Indices: 119096281--119096316 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
119096271 ATTTATTTCT
119096281 AAAAAT-ATGTTAAAAATA
1 AAAAATAAT-TTAAAAATA
119096299 AAAAATAATTTAAAAATA
1 AAAAATAATTTAAAAATA
119096317 GCTCGTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATAATTTAAAAATA
Found at i:119098736 original size:23 final size:22
Alignment explanation
Indices: 119098697--119098761 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
119098687 ATTTGAATTT
*
119098697 TTAAA-TTTAAAAAATAAATAGA
1 TTAAATTTTAAAAAATAAA-AAA
*
119098719 TTAAATTTTTAAAAATAAAAAA
1 TTAAATTTTAAAAAATAAAAAA
*
119098741 TTAAATTTTAAATATATAAAA
1 TTAAATTTTAAA-AAATAAAA
119098762 GGGTATTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 18 0.49
23 19 0.51
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAATTTTAAAAAATAAAAAA
Found at i:119098749 original size:22 final size:23
Alignment explanation
Indices: 119098697--119098752 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
119098687 ATTTGAATTT
*
119098697 TTAAA-TTTAAAAAATAAATAGA
1 TTAAATTTTAAAAAATAAATAAA
*
119098719 TTAAATTTTTAAAAATAAA-AAA
1 TTAAATTTTAAAAAATAAATAAA
119098741 TTAAATTTTAAA
1 TTAAATTTTAAA
119098753 TATATAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAAATTTTAAAAAATAAATAAA
Found at i:119098761 original size:22 final size:22
Alignment explanation
Indices: 119098697--119098762 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
119098687 ATTTGAATTT
*
119098697 TTAAA-TTTAAAAAATAAATAGA
1 TTAAATTTTAAAATATAAA-AGA
*
119098719 TTAAATTTTTAAAA-ATAAAAAA
1 TTAAA-TTTTAAAATATAAAAGA
119098741 TTAAATTTTAAATATATAAAAG
1 TTAAATTTTAAA-ATATAAAAG
119098763 GGTATTATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
21 7 0.18
22 13 0.34
23 11 0.29
24 7 0.18
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
TTAAATTTTAAAATATAAAAGA
Found at i:119103676 original size:21 final size:21
Alignment explanation
Indices: 119103647--119103694 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
119103637 TTCATCGATT
*
119103647 ACATTAGATATTACGTGATAA
1 ACATCAGATATTACGTGATAA
*
119103668 ACATCAGATATTATGTGATAA
1 ACATCAGATATTACGTGATAA
119103689 ACATCA
1 ACATCA
119103695 ATTTCCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (21 bp):
ACATCAGATATTACGTGATAA
Found at i:119104310 original size:30 final size:32
Alignment explanation
Indices: 119104274--119104332 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
119104264 AATTCAATTA
119104274 GAAATTA-TCAATAATTT-AT-TATTTTTTAAT
1 GAAATTAGTC-ATAATTTAATATATTTTTTAAT
*
119104304 GAAATTAGTCATATTTTAATATATTTTTT
1 GAAATTAGTCATAATTTAATATATTTTTT
119104333 TAACATCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 13 0.52
31 4 0.16
32 8 0.32
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.54
Consensus pattern (32 bp):
GAAATTAGTCATAATTTAATATATTTTTTAAT
Found at i:119106549 original size:21 final size:21
Alignment explanation
Indices: 119106523--119106565 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
119106513 GAGTATTTTA
* *
119106523 TTTTATAATTTTTTTAACTTT
1 TTTTATAATTTTTATAAATTT
*
119106544 TTTTATTATTTTTATAAATTT
1 TTTTATAATTTTTATAAATTT
119106565 T
1 T
119106566 AAATTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATAATTTTTATAAATTT
Found at i:119109200 original size:19 final size:18
Alignment explanation
Indices: 119109167--119109212 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
119109157 AAGTTAAGTG
*
119109167 AAATAATA-AGTTAAGAA
1 AAATAATATTGTTAAGAA
119109184 AAGATAATATTGTTAAGAA
1 AA-ATAATATTGTTAAGAA
*
119109203 GAATAATATT
1 AAATAATATT
119109213 TAAATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 14 0.56
19 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (18 bp):
AAATAATATTGTTAAGAA
Found at i:119109208 original size:18 final size:19
Alignment explanation
Indices: 119109176--119109212 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
119109166 GAAATAATAA
119109176 GTTAAGAAAAGATAATATT
1 GTTAAGAAAAGATAATATT
*
119109195 GTTAAGAAGA-ATAATATT
1 GTTAAGAAAAGATAATATT
119109213 TAAATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.32
Consensus pattern (19 bp):
GTTAAGAAAAGATAATATT
Found at i:119114282 original size:13 final size:13
Alignment explanation
Indices: 119114264--119114292 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
119114254 ATTTTAATGT
119114264 TTACATTATAGTA
1 TTACATTATAGTA
119114277 TTACATTATAGTA
1 TTACATTATAGTA
119114290 TTA
1 TTA
119114293 TATAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTACATTATAGTA
Found at i:119117467 original size:257 final size:257
Alignment explanation
Indices: 119117004--119117526 Score: 1010
Period size: 257 Copynumber: 2.0 Consensus size: 257
119116994 AAATTAGCTA
* *
119117004 AATAAAAATGGGACTAAATTGGAATATCTAGAATTCTCTTCATTTTTCTTTATTTTCATCAGCTG
1 AATAAACATGGGACTAAATTGGAATATCCAGAATTCTCTTCATTTTTCTTTATTTTCATCAGCTG
119117069 AAAAACAGCCATGGAAGAGGGTTCAAGCTGGTTTTCATTCTCTAGCTACATGTAAGTTTAATTCT
66 AAAAACAGCCATGGAAGAGGGTTCAAGCTGGTTTTCATTCTCTAGCTACATGTAAGTTTAATTCT
119117134 TGCTTTCTCCTAGAAATTTCTATGTTTTTGGACTTTTACAATTAGGTCCAACTTACTATTTCATT
131 TGCTTTCTCCTAGAAATTTCTATGTTTTTGGACTTTTACAATTAGGTCCAACTTACTATTTCATT
119117199 AGTTTTTGATTTCATGGTTAATTTTTAAAGTTTTTATGGATTAGTGATGGAAGAATATGATG
196 AGTTTTTGATTTCATGGTTAATTTTTAAAGTTTTTATGGATTAGTGATGGAAGAATATGATG
119117261 AATAAACATGGGACTAAATTGGAATATCCAGAATTCTCTTCATTTTTCTTTATTTTCATCAGCTG
1 AATAAACATGGGACTAAATTGGAATATCCAGAATTCTCTTCATTTTTCTTTATTTTCATCAGCTG
119117326 AAAAACAGCCATGGAAGAGGGTTCAAGCTGGTTTTCATTCTCTAGCTACATGTAAGTTTAATTCT
66 AAAAACAGCCATGGAAGAGGGTTCAAGCTGGTTTTCATTCTCTAGCTACATGTAAGTTTAATTCT
*
119117391 TGCTTTCTCCTAGAAATTTCTATGTTTTTGGACTTTTACAATTAGGTCCAACTTACTATTTCGTT
131 TGCTTTCTCCTAGAAATTTCTATGTTTTTGGACTTTTACAATTAGGTCCAACTTACTATTTCATT
*
119117456 AGTTTTTGATTTCATGGTTAATTTTTAAAGTTTTTATGGATTAGTGATGGAAGTATATGATG
196 AGTTTTTGATTTCATGGTTAATTTTTAAAGTTTTTATGGATTAGTGATGGAAGAATATGATG
119117518 AATAAACAT
1 AATAAACAT
119117527 ATAATTGAAG
Statistics
Matches: 262, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
257 262 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (257 bp):
AATAAACATGGGACTAAATTGGAATATCCAGAATTCTCTTCATTTTTCTTTATTTTCATCAGCTG
AAAAACAGCCATGGAAGAGGGTTCAAGCTGGTTTTCATTCTCTAGCTACATGTAAGTTTAATTCT
TGCTTTCTCCTAGAAATTTCTATGTTTTTGGACTTTTACAATTAGGTCCAACTTACTATTTCATT
AGTTTTTGATTTCATGGTTAATTTTTAAAGTTTTTATGGATTAGTGATGGAAGAATATGATG
Found at i:119118829 original size:35 final size:35
Alignment explanation
Indices: 119118790--119119123 Score: 431
Period size: 35 Copynumber: 9.6 Consensus size: 35
119118780 CATGGAAAAG
119118790 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * * *
119118825 TGTGAAATGTAGGTATGGTATTAACCATACCTAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* *
119118860 TGTGAAACGTAGGTGTGATATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
119118895 TGTGAAACGTAGGTATGGTGTTAACCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
*
119118930 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
119118965 TGTGAAA-GTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* *
119118999 TGTGAAACATAGGTATGATATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
119119034 TGTGAAACATAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
** * *
119119069 TAAG-AACGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCAT-CCATACCGAGT
*
119119103 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
119119124 TTCAATAAGG
Statistics
Matches: 256, Mismatches: 40, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
33 1 0.00
34 57 0.22
35 198 0.77
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
Found at i:119118907 original size:70 final size:70
Alignment explanation
Indices: 119118790--119119124 Score: 482
Period size: 70 Copynumber: 4.8 Consensus size: 70
119118780 CATGGAAAAG
* *
119118790 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATA-
119118855 CT-AGT
65 CTGAGT
* *
119118860 TGTGAAACGTAGGTGTGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTGTTAACCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
*
119118925 CGAGT
66 TGAGT
* *
119118930 TGTGAAATGTAGGTATGGTATCATCCATACCGAGTTGTGAAA-GTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
119118994 TGAGT
66 TGAGT
* * *
119118999 TGTGAAACATAGGTATGATATCATCCATACCGAGTTGTGAAACATAGGTATGGTATTATCCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
119119064 TGAGT
66 TGAGT
** * *
119119069 TAAG-AACGTAGGTATGGCATTTC--CCATACCGAGTTGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTAT-G-ATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATT
119119125 TCAATAAGGA
Statistics
Matches: 240, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
69 106 0.44
70 130 0.54
71 4 0.02
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (70 bp):
TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
TGAGT
Found at i:119119039 original size:104 final size:104
Alignment explanation
Indices: 119118790--119119123 Score: 452
Period size: 104 Copynumber: 3.2 Consensus size: 104
119118780 CATGGAAAAG
*
119118790 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
* * * * *
119118855 CTAGTTGTGAAACGTAGGTGTGATATCATCCATACCGAGT
66 CGAGTTGTGAAA-GTAGGTATGGTATTAACCATACCGAGT
* * * *
119118895 TGTGAAACGTAGGTATGGTGTTAACCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
*
119118960 CGAGTTGTGAAAGTAGGTATGGTATTAACCATACTGAGT
66 CGAGTTGTGAAAGTAGGTATGGTATTAACCATACCGAGT
* * **
119118999 TGTGAAACATAGGTATGATATCATCCATACCGAGTTGTGAAACATAGGTATGGTATTATCCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
* ** * * **
119119064 TGAGTTAAGAACGTAGGTATGGCATTTCCCATACCGAGT
66 CGAGTTGTGAAAGTAGGTATGGTATTAACCATACCGAGT
*
119119103 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
119119124 TTCAATAAGG
Statistics
Matches: 199, Mismatches: 30, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
104 128 0.64
105 71 0.36
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (104 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
CGAGTTGTGAAAGTAGGTATGGTATTAACCATACCGAGT
Found at i:119119584 original size:24 final size:24
Alignment explanation
Indices: 119119525--119119595 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
119119515 AAGACATGGC
* * *
119119525 CAGTAAGCTCTTTATGAGCTGATAA
1 CAGTAAACTCTAT-TGAGCTGAAAA
119119550 CAGTAAACTCTATTGAGCTGAAAA
1 CAGTAAACTCTATTGAGCTGAAAA
* ** *
119119574 CGGTATGCTCTATTGAGTTGAA
1 CAGTAAACTCTATTGAGCTGAA
119119596 CAATAAGCTC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 28 0.72
25 11 0.28
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31
Consensus pattern (24 bp):
CAGTAAACTCTATTGAGCTGAAAA
Found at i:119120713 original size:42 final size:42
Alignment explanation
Indices: 119120652--119120778 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
119120642 CTTCGTTTTC
** *
119120652 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
*
119120695 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
*
119120736 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
119120777 TC
1 TC
119120779 TTACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:119120877 original size:31 final size:31
Alignment explanation
Indices: 119120837--119120945 Score: 164
Period size: 31 Copynumber: 3.5 Consensus size: 31
119120827 ACTTGTAGAT
* * *
119120837 GAAGCTACCACTATTCACTGAACAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCA
* *
119120868 GGAGCTACCATTTTTCACTGATCAGGTAGCA
1 GAAGCTACCACTTTTCACTGATCAGGTAGCA
*
119120899 GAAGCTACCACTTTTCACTGATCAGGTAGCT
1 GAAGCTACCACTTTTCACTGATCAGGTAGCA
119120930 GAAGCTACCACTTTTC
1 GAAGCTACCACTTTTC
119120946 TCTTGTCATT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GAAGCTACCACTTTTCACTGATCAGGTAGCA
Found at i:119121021 original size:50 final size:50
Alignment explanation
Indices: 119120924--119121100 Score: 264
Period size: 50 Copynumber: 3.5 Consensus size: 50
119120914 CACTGATCAG
* * * *
119120924 GTAGCTGAAGCTACCACTTTTCTCTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCATTGATCAGATAAGT
*
119120975 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
* * *
119121025 GTAGCCGAAGCTATTACTTGTCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
*
119121075 GTGGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
119121101 GTTGCCATGG
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 92 0.81
51 22 0.19
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
Found at i:119125007 original size:26 final size:26
Alignment explanation
Indices: 119124978--119125034 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
119124968 GTATTCATAT
*
119124978 ATCACAATATGTATTTGTATCATTAA
1 ATCACAATATGTATTTGTATCATCAA
* *
119125004 ATCATAGTATGTATTTGTATCATCAA
1 ATCACAATATGTATTTGTATCATCAA
119125030 ATCAC
1 ATCAC
119125035 GTTATCAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (26 bp):
ATCACAATATGTATTTGTATCATCAA
Found at i:119131506 original size:12 final size:12
Alignment explanation
Indices: 119131489--119131513 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119131479 TCATTTTTGC
119131489 TCATGAACATAG
1 TCATGAACATAG
119131501 TCATGAACATAG
1 TCATGAACATAG
119131513 T
1 T
119131514 GATTTCTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TCATGAACATAG
Found at i:119135867 original size:7 final size:7
Alignment explanation
Indices: 119135855--119135883 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
119135845 TATACAGAAA
119135855 TCACTTG
1 TCACTTG
119135862 TCACTTG
1 TCACTTG
119135869 TCACTTG
1 TCACTTG
119135876 TCACTTG
1 TCACTTG
119135883 T
1 T
119135884 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:119135917 original size:31 final size:31
Alignment explanation
Indices: 119135882--119136090 Score: 310
Period size: 31 Copynumber: 6.7 Consensus size: 31
119135872 CTTGTCACTT
* *
119135882 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
119135913 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119135944 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119135975 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119136006 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
119136037 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119136068 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
119136091 GTTGTCATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:119136174 original size:50 final size:50
Alignment explanation
Indices: 119136068--119136244 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
119136058 CACTGATCAG
* * * *
119136068 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
119136119 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
119136169 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
119136219 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
119136245 GTTTCCATGG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:119138963 original size:52 final size:52
Alignment explanation
Indices: 119138868--119139052 Score: 214
Period size: 52 Copynumber: 3.5 Consensus size: 52
119138858 TATCCCAGGC
* ** *
119138868 ATGGTCTTATAC-GGAGGCACATTATCAC-ATCATATTGATGCCATAGCCCAACC
1 ATGGTCTTATACGGGA-GCACA-TATCACAAT-ACACCGATGCCATAGCCCAACT
*
119138921 ATGGTCTTATACGGGAGTACATATCACAATACACCGATGCCATAGCCCAACT
1 ATGGTCTTATACGGGAGCACATATCACAATACACCGATGCCATAGCCCAACT
* * ** *
119138973 ATGGTCTTATACGGGCA-CACATATCACAATGCACCAATGATATAGCCCAAAT
1 ATGGTCTTATACGGG-AGCACATATCACAATACACCGATGCCATAGCCCAACT
*
119139025 ATGGTCTTATACGGGCGCACATATCACA
1 ATGGTCTTATACGGGAGCACATATCACA
119139053 TCATTCTGTC
Statistics
Matches: 116, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
52 94 0.81
53 19 0.16
54 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (52 bp):
ATGGTCTTATACGGGAGCACATATCACAATACACCGATGCCATAGCCCAACT
Found at i:119142192 original size:3 final size:3
Alignment explanation
Indices: 119142184--119142223 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
119142174 TTTAAAATAT
* * *
119142184 TTA TTA TTA TTA TTA TCA TCA TCA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
119142224 AATGTAATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:119142238 original size:24 final size:25
Alignment explanation
Indices: 119142182--119142239 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
119142172 ATTTTAAAAT
* *
119142182 ATTTATTATTATTATTATCATCATC
1 ATTTATTATTATTATAATCATAATC
*
119142207 ATTATTATTATTATTATAAT-GTAATC
1 A-T-TTATTATTATTATAATCATAATC
119142233 ATTTATT
1 ATTTATT
119142240 TATTTGTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.18
25 2 0.07
26 6 0.21
27 15 0.54
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (25 bp):
ATTTATTATTATTATAATCATAATC
Found at i:119142326 original size:3 final size:3
Alignment explanation
Indices: 119142320--119142357 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
119142310 TCGTCGTTAC
*
119142320 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT ATAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
119142358 TTTAAATTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:119142437 original size:17 final size:17
Alignment explanation
Indices: 119142415--119142450 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
119142405 ATTACCCTTT
* *
119142415 TTATTATTATTATTGTA
1 TTATTACTATTATTATA
119142432 TTATTACTATTATTATA
1 TTATTACTATTATTATA
119142449 TT
1 TT
119142451 TACACCTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
TTATTACTATTATTATA
Found at i:119142631 original size:15 final size:15
Alignment explanation
Indices: 119142608--119142637 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119142598 ATAATTTCAT
*
119142608 ATTATTATTATTATC
1 ATTACTATTATTATC
119142623 ATTACTATTATTATC
1 ATTACTATTATTATC
119142638 CTTTTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTACTATTATTATC
Found at i:119144706 original size:3 final size:3
Alignment explanation
Indices: 119144700--119144725 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
119144690 TAAAACAATG
119144700 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
119144726 GATTACCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:119145447 original size:18 final size:18
Alignment explanation
Indices: 119145426--119145469 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
119145416 ATTTAACAGG
119145426 ATACTAATTTAATTAAAA
1 ATACTAATTTAATTAAAA
119145444 ATACTAATTTAATTAAAA
1 ATACTAATTTAATTAAAA
*
119145462 ATAATAAT
1 ATACTAAT
119145470 ATATTCTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
ATACTAATTTAATTAAAA
Found at i:119161604 original size:126 final size:126
Alignment explanation
Indices: 119161445--119161812 Score: 587
Period size: 126 Copynumber: 2.9 Consensus size: 126
119161435 CTCGTTTATA
* * *
119161445 GTAGAAAAAGAGCATTCACGTGGGAGCTTTTTTCATAAATTTTGTTGACATTGCATCCTGCTTGA
1 GTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAAATTTTGCTGACATTGCATCCTGCTTGA
*
119161510 AGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTACT
66 AGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAAACTACT
* *
119161571 GTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCATAAATTTTGCTGACATTGTATCCTGCTTGA
1 GTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAAATTTTGCTGACATTGCATCCTGCTTGA
* *
119161636 AGCGTTTTTGACACTATTTATTCAAAAACGTCTTCTCAAAATTATTTTTTCAGAAACTACT
66 AGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAAACTACT
* * * *
119161697 GTAGCAAAACAGCGTCCACGTGGGAGCTTTTTTC-TGTATTTTTGCTGACATTGCATCCTGCTTG
1 GTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAT-AAATTTTGCTGACATTGCATCCTGCTTG
* *
119161761 AAGCATTTTTGACACTATTTGTTCAGAAACG-CTTCTTAAAATTATTTTTTCA
65 AAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCA
119161813 CGGTAAAAAT
Statistics
Matches: 223, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
125 21 0.09
126 202 0.91
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (126 bp):
GTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAAATTTTGCTGACATTGCATCCTGCTTGA
AGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAAACTACT
Found at i:119161914 original size:21 final size:22
Alignment explanation
Indices: 119161888--119161935 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
119161878 TAATTACTCT
119161888 ATTTAA-AAAACATAAACCCTA
1 ATTTAATAAAACATAAACCCTA
* *
119161909 ATTTAATAAACCTTAAACCCTA
1 ATTTAATAAAACATAAACCCTA
119161931 ATTTA
1 ATTTA
119161936 GTTTACTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (22 bp):
ATTTAATAAAACATAAACCCTA
Found at i:119161946 original size:22 final size:22
Alignment explanation
Indices: 119161900--119161974 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
119161890 TTAAAAAACA
** *
119161900 TAAACCCTAATTTAATAAACCT
1 TAAACCCTAATTTAATTTACTT
*
119161922 TAAACCCTAATTTAGTTTACTT
1 TAAACCCTAATTTAATTTACTT
* * *
119161944 TAAATCTTAACTTAATTTA-TT
1 TAAACCCTAATTTAATTTACTT
119161965 TAAAACCCTA
1 T-AAACCCTA
119161975 GAACTCTAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
21 3 0.07
22 39 0.93
ACGTcount: A:0.40, C:0.19, G:0.01, T:0.40
Consensus pattern (22 bp):
TAAACCCTAATTTAATTTACTT
Found at i:119162069 original size:22 final size:22
Alignment explanation
Indices: 119162041--119162082 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
119162031 AATATTTAAT
119162041 TTAATTTATTTAAAACCCTAAC
1 TTAATTTATTTAAAACCCTAAC
119162063 TTAATTTATTTAAAACCCTA
1 TTAATTTATTTAAAACCCTA
119162083 GAACCCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAATTTATTTAAAACCCTAAC
Found at i:119162126 original size:33 final size:34
Alignment explanation
Indices: 119162061--119162128 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
119162051 TAAAACCCTA
* * *
119162061 ACTTAATTTATTTAAAACCCTAGAACCCTAATTT
1 ACTTAATATATTTAAAAACATAGAACCCTAATTT
119162095 ACTTAATATATTTAAAAACATA-AACCCTAATTT
1 ACTTAATATATTTAAAAACATAGAACCCTAATTT
119162128 A
1 A
119162129 ATAAACCCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 12 0.39
34 19 0.61
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.37
Consensus pattern (34 bp):
ACTTAATATATTTAAAAACATAGAACCCTAATTT
Found at i:119162153 original size:107 final size:107
Alignment explanation
Indices: 119161852--119162260 Score: 503
Period size: 108 Copynumber: 3.9 Consensus size: 107
119161842 ACACAATGTT
* * * *
119161852 ATTTTTTTAAAA-ACTA-AACCCTAATTTAATTACTCTATTTAAAAAACATAAACCCTAATTTAA
1 ATTTATTTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAAACATAAACCCTAATTTAA
* * * * *
119161915 TAAACCTTAAACCCTAATTTAGTTTACTTTAAATCTTAACTTA
66 TAAACCCTAAACCTTAATTTAATTTA-TTTAAACCCTAACTTA
* * ***
119161958 ATTTATTTAAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAAACATAAGCCCTAATTCCC
1 ATTTATTTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAAACATAAACCCTAATTTAA
**
119162023 TAAACCC-AAATATTTAATTTAATTTATTTAAAACCCTAACTTA
66 TAAACCCTAAA-CCTTAATTTAATTTATTT-AAACCCTAACTTA
*
119162066 ATTTATTTAAAACCCTAGAACCCTAATTTACTTAATATATTT-AAAAACATAAACCCTAATTTAA
1 ATTTATTTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAAACATAAACCCTAATTTAA
*
119162130 TAAACCCTAAACCTTAATTTAATTTATTTTAAACACTAACTTA
66 TAAACCCTAAACCTTAATTTAATTTA-TTTAAACCCTAACTTA
* * *
119162173 ATTTATTTAAAATCCTAGAACCCTAATTTACTTAATCTATTT--AAAACCTAAGCCCTAATTTAT
1 ATTTATTTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAAACATAAACCCTAATTTA-
*
119162236 TTAAAACCCT-AA-CTTAATTT-ATTTA
65 AT-AAACCCTAAACCTTAATTTAATTTA
119162261 AAAATAATTA
Statistics
Matches: 265, Mismatches: 30, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
105 5 0.02
106 37 0.14
107 102 0.38
108 121 0.46
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.39
Consensus pattern (107 bp):
ATTTATTTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAAACATAAACCCTAATTTAA
TAAACCCTAAACCTTAATTTAATTTATTTAAACCCTAACTTA
Found at i:119162207 original size:34 final size:32
Alignment explanation
Indices: 119162168--119162239 Score: 99
Period size: 34 Copynumber: 2.2 Consensus size: 32
119162158 TTAAACACTA
*
119162168 ACTTAATTTATTTAAAATCCTAGAACCCTAATTT
1 ACTTAATCTATTTAAAA-CCTA-AACCCTAATTT
*
119162202 ACTTAATCTATTTAAAACCTAAGCCCTAATTT
1 ACTTAATCTATTTAAAACCTAAACCCTAATTT
*
119162234 ATTTAA
1 ACTTAA
119162240 AACCCTAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 15 0.43
33 4 0.11
34 16 0.46
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.40
Consensus pattern (32 bp):
ACTTAATCTATTTAAAACCTAAACCCTAATTT
Found at i:119162214 original size:56 final size:57
Alignment explanation
Indices: 119162041--119162246 Score: 227
Period size: 56 Copynumber: 3.8 Consensus size: 57
119162031 AATATTTAAT
* *
119162041 TTAATTTATTTAAAACCCTAA-CTTAATTTATTTAAAACCCTAGAACCCTAATTTAC
1 TTAATTTATTTAAAACACTAACCCTAATTTATTTAAAACCCTAGAACCCTAATTTAC
* * *
119162097 TTAATATATTTAAAA-ACATAAACCCTAATTTA-AT-AAACCCTA-AACCTTAA--T--
1 TTAATTTATTTAAAACAC-T-AACCCTAATTTATTTAAAACCCTAGAACCCTAATTTAC
* * *
119162148 TTAATTTATTTTAAACACTAA-CTTAATTTATTTAAAATCCTAGAACCCTAATTTAC
1 TTAATTTATTTAAAACACTAACCCTAATTTATTTAAAACCCTAGAACCCTAATTTAC
*
119162204 TTAATCTATTTAAAAC-CTAAGCCCTAATTTATTTAAAACCCTA
1 TTAATTTATTTAAAACACTAA-CCCTAATTTATTTAAAACCCTA
119162247 ACTTAATTTA
Statistics
Matches: 122, Mismatches: 15, Indels: 25
0.75 0.09 0.15
Matches are distributed among these distances:
49 8 0.07
50 3 0.02
51 21 0.17
52 9 0.07
53 1 0.01
54 1 0.01
55 12 0.10
56 37 0.30
57 22 0.18
58 8 0.07
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.38
Consensus pattern (57 bp):
TTAATTTATTTAAAACACTAACCCTAATTTATTTAAAACCCTAGAACCCTAATTTAC
Found at i:119162264 original size:23 final size:21
Alignment explanation
Indices: 119162202--119162263 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 21
119162192 ACCCTAATTT
*
119162202 ACTTAATCTATTTAAAACCTA
1 ACTTAATTTATTTAAAACCTA
*
119162223 AGCCCTAATTTATTTAAAACCCTA
1 A--CTTAATTTATTTAAAA-CCTA
119162247 ACTTAATTTATTTAAAA
1 ACTTAATTTATTTAAAA
119162264 ATAATTAACC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 1 0.03
22 15 0.43
23 14 0.40
24 5 0.14
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.39
Consensus pattern (21 bp):
ACTTAATTTATTTAAAACCTA
Found at i:119163668 original size:18 final size:17
Alignment explanation
Indices: 119163618--119163668 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 17
119163608 TTCATAACAC
119163618 TTTTTATAAATAATT-T
1 TTTTTATAAATAATTAT
* *
119163634 TTTTTTTCAAA-ATTTAT
1 TTTTTAT-AAATAATTAT
119163651 TTTTTATAAATAAGTTAT
1 TTTTTATAAATAA-TTAT
119163669 AATAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
16 12 0.44
17 11 0.41
18 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTTATAAATAATTAT
Found at i:119163903 original size:24 final size:24
Alignment explanation
Indices: 119163849--119163901 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 24
119163839 ATTTTAGAAC
119163849 TTTTTTTAAGATTTAAATAATATA
1 TTTTTTTAAGATTTAAATAATATA
* *
119163873 ATTTTTTAATATTT--ATAATATA
1 TTTTTTTAAGATTTAAATAATATA
119163895 TTTTTTT
1 TTTTTTT
119163902 TTGTTGTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 14 0.54
24 12 0.46
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TTTTTTTAAGATTTAAATAATATA
Found at i:119165153 original size:22 final size:22
Alignment explanation
Indices: 119165104--119165147 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
119165094 TCACGTTAAT
119165104 AAATAATTTAAAAATTATAAAA
1 AAATAATTTAAAAATTATAAAA
*
119165126 AAATAA-TTATAAATTA-AAAA
1 AAATAATTTAAAAATTATAAAA
119165146 AA
1 AA
119165148 TCATAAACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 9 0.43
22 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATAATTTAAAAATTATAAAA
Found at i:119173917 original size:5 final size:5
Alignment explanation
Indices: 119173891--119173948 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
119173881 ATGTGTTAAA
* **
119173891 ATATAT ATATT AAATT ATTATT ATATT ATAGA ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
119173940 ATATT ATAT
1 ATATT ATAT
119173949 AAATAAGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
5 29 0.67
6 10 0.23
7 4 0.09
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (5 bp):
ATATT
Found at i:119173940 original size:12 final size:12
Alignment explanation
Indices: 119173894--119173949 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
119173884 TGTTAAAATA
*
119173894 TATATATTAAAT
1 TATATATTATAT
119173906 TAT-TATTATAT
1 TATATATTATAT
119173917 TATAGAATATTATAT
1 TAT---ATATTATAT
119173932 TATATATTATAT
1 TATATATTATAT
119173944 TATATA
1 TATATA
119173950 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 18 0.46
15 11 0.28
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (12 bp):
TATATATTATAT
Found at i:119175293 original size:18 final size:19
Alignment explanation
Indices: 119175272--119175310 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
119175262 ATATATAAAT
119175272 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
119175290 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
119175309 AT
1 AT
119175311 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:119175660 original size:39 final size:40
Alignment explanation
Indices: 119175550--119175660 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 40
119175540 GACCTCGAGT
* * **
119175550 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGATAGAGC
** ** * *
119175591 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGATAGAGC
*
119175629 CGATGAGACACTGGGTGTCAAATATTGCTTCG
1 CGATGAGACACTGGGTGTCAAATATTACTTCG
119175661 AACTATCCAA
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
38 18 0.34
39 18 0.34
40 1 0.02
41 16 0.30
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGATAGAGC
Found at i:119175830 original size:18 final size:19
Alignment explanation
Indices: 119175807--119175847 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
119175797 AATGAAATGA
119175807 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
119175825 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
119175844 GAAA
1 GAAA
119175848 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:119175845 original size:13 final size:13
Alignment explanation
Indices: 119175795--119175834 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
119175785 TTGAGCTATT
119175795 AGAA-TGAAA-TG
1 AGAATTGAAATTG
119175806 AGAAATTG-AATTG
1 AG-AATTGAAATTG
119175819 AGAATTGAAATTG
1 AGAATTGAAATTG
119175832 AGA
1 AGA
119175835 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:119176578 original size:65 final size:65
Alignment explanation
Indices: 119176474--119176604 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
119176464 GCCCATTAAA
* *
119176474 GGGACGACATCTTAAAACTAGGATGTGTGTAAATATTTATTTTAATTAATGACCGAAATTGGACT
1 GGGACGACATCTTAAAACTAGGATGTGTGTAAATATTTATTTTAATTAACGACAGAAATTGGACT
*
119176539 GGGACGATATCTTAAAACTAGGATGTGTGTAAATATTTATTTTAATTAACGACAGAAATTGGACT
1 GGGACGACATCTTAAAACTAGGATGTGTGTAAATATTTATTTTAATTAACGACAGAAATTGGACT
119176604 G
1 G
119176605 TACTGACTGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.34
Consensus pattern (65 bp):
GGGACGACATCTTAAAACTAGGATGTGTGTAAATATTTATTTTAATTAACGACAGAAATTGGACT
Found at i:119178153 original size:30 final size:30
Alignment explanation
Indices: 119178117--119178178 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
119178107 TCTATTAACG
119178117 CACTATAGGTAACAACATCAGGCTCAATGC
1 CACTATAGGTAACAACATCAGGCTCAATGC
119178147 CACTATAGGTAACAACATCAGGCTCAATGC
1 CACTATAGGTAACAACATCAGGCTCAATGC
119178177 CA
1 CA
119178179 TGCTTTCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.19
Consensus pattern (30 bp):
CACTATAGGTAACAACATCAGGCTCAATGC
Found at i:119186259 original size:24 final size:24
Alignment explanation
Indices: 119186232--119186283 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
119186222 TTAGTAAGTC
*
119186232 AAATAGACTATACTAATAAATGCT
1 AAATAGACTATACTAATAAATACT
* *
119186256 AAATATATTATACTAATAAATACT
1 AAATAGACTATACTAATAAATACT
119186280 AAAT
1 AAAT
119186284 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAGACTATACTAATAAATACT
Found at i:119189892 original size:28 final size:31
Alignment explanation
Indices: 119189861--119189927 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 31
119189851 CCACTATTCT
*
119189861 TTTTTA-ATTATT-TA-ATATTTTTAATAAA
1 TTTTTATATTATTATACATAATTTTAATAAA
*
119189889 TTTTTATGTTATTGATACATAATTTTAATAAA
1 TTTTTATATTATT-ATACATAATTTTAATAAA
119189921 TATTTTA
1 T-TTTTA
119189928 CTCTGAATCC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 6 0.19
29 5 0.16
31 2 0.06
32 14 0.44
33 5 0.16
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (31 bp):
TTTTTATATTATTATACATAATTTTAATAAA
Found at i:119190877 original size:14 final size:14
Alignment explanation
Indices: 119190858--119190888 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
119190848 ATTGTGTGTT
119190858 GGTATGATAATTAA
1 GGTATGATAATTAA
119190872 GGTATGATAATTAA
1 GGTATGATAATTAA
119190886 GGT
1 GGT
119190889 GTTCACTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (14 bp):
GGTATGATAATTAA
Found at i:119191715 original size:15 final size:14
Alignment explanation
Indices: 119191695--119191742 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
119191685 TTTTAAATTC
119191695 TAAAAATATAATAAT
1 TAAAAATATAA-AAT
119191710 TAAAAATAATAAAAT
1 TAAAAAT-ATAAAAT
119191725 T-AAAATATAAATAT
1 TAAAAATATAAA-AT
119191739 TAAA
1 TAAA
119191743 TCTATAACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 13 0.43
16 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAATATAAAAT
Found at i:119191734 original size:13 final size:13
Alignment explanation
Indices: 119191697--119191742 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 13
119191687 TTAAATTCTA
119191697 AAAATATAATAATT
1 AAAATATAA-AATT
119191711 AAAAATAATAAAATT
1 -AAAAT-ATAAAATT
119191726 AAAATATAAATATT
1 AAAATATAAA-ATT
119191740 AAA
1 AAA
119191743 TCTATAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.17
14 11 0.38
15 9 0.31
16 4 0.14
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATATAAAATT
Found at i:119202398 original size:105 final size:105
Alignment explanation
Indices: 119202207--119202407 Score: 253
Period size: 105 Copynumber: 1.9 Consensus size: 105
119202197 TATAGGTAAC
* **
119202207 AACATCAGGCTCAATGCCTTGCTTTATCATTGTGTCAACAATATCTTTAGCTTTAGAAAGCATCC
1 AACATCAGGCTCAATGCCATGCTTTATCATTGTGTCAACAATATCTACAGCTTTAGAAAGCATCC
* * *
119202272 CTTCTTTGTAACATGCATCGATGC-ATATATTGTACGTGAT
66 CCTCCTTGCAACATGCATCGAT-CAATATATTGTACGTGAT
* * * * *
119202312 AACATTAGGCTCAATGCCATGCTTTCTCATTGTGTCAACGATTTCTACAGCTTCT-GAAATCATC
1 AACATCAGGCTCAATGCCATGCTTTATCATTGTGTCAACAATATCTACAGCTT-TAGAAAGCATC
* *
119202376 CCCTCCTTGCAACGTGCGTCGATCAATATATT
65 CCCTCCTTGCAACATGCATCGATCAATATATT
119202408 ATATGTGTAG
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
104 1 0.01
105 79 0.98
106 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (105 bp):
AACATCAGGCTCAATGCCATGCTTTATCATTGTGTCAACAATATCTACAGCTTTAGAAAGCATCC
CCTCCTTGCAACATGCATCGATCAATATATTGTACGTGAT
Found at i:119206243 original size:15 final size:17
Alignment explanation
Indices: 119206217--119206248 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
119206207 TTCTATATTT
119206217 TTTTATATAATT-AATA
1 TTTTATATAATTCAATA
119206233 TTTTA-ATAATTCAATA
1 TTTTATATAATTCAATA
119206249 ATTATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTTATATAATTCAATA
Found at i:119211170 original size:20 final size:21
Alignment explanation
Indices: 119211133--119211171 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
119211123 CCGATAGTTG
* *
119211133 AATTATTTTTCTCTATTTTTT
1 AATTATTTTTATCAATTTTTT
119211154 AATT-TTTTTATCAATTTT
1 AATTATTTTTATCAATTTT
119211172 AATAATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (21 bp):
AATTATTTTTATCAATTTTTT
Found at i:119225386 original size:25 final size:26
Alignment explanation
Indices: 119225326--119225374 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
119225316 ATTTGTTTTA
*
119225326 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
119225350 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
119225375 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:119226346 original size:21 final size:20
Alignment explanation
Indices: 119226308--119226347 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
119226298 AATATAAGAT
**
119226308 TAACTCATATATCCTTATAG
1 TAACTCATATATAATTATAG
119226328 TAACTCTATATATAATTATA
1 TAACTC-ATATATAATTATA
119226348 ATAGTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.40, C:0.15, G:0.03, T:0.42
Consensus pattern (20 bp):
TAACTCATATATAATTATAG
Found at i:119227458 original size:6 final size:6
Alignment explanation
Indices: 119227449--119227481 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
119227439 AAAAGAAAAA
119227449 GTGTGG GTGTGG GTGTGG GTGTGG GTGTGG GTG
1 GTGTGG GTGTGG GTGTGG GTGTGG GTGTGG GTG
119227482 GCATCGACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (6 bp):
GTGTGG
Found at i:119234200 original size:18 final size:18
Alignment explanation
Indices: 119234177--119234269 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
119234167 CCCAACTACT
*
119234177 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
119234195 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
119234213 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* * * *
119234231 ATATACATGAATAGTGCG
1 GTATACGTGAATAGTACC
*
119234249 GTATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
119234267 GTA
1 GTA
119234270 AACGGTCGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:119240621 original size:16 final size:16
Alignment explanation
Indices: 119240602--119240646 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
119240592 TTTTTTTTCA
119240602 ATTTTAATATTTTATT
1 ATTTTAATATTTTATT
*
119240618 A-TTTAATGTTTT-TT
1 ATTTTAATATTTTATT
119240632 ATTCTTAATATTTTA
1 ATT-TTAATATTTTA
119240647 ATAATTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 3 0.12
15 11 0.46
16 10 0.42
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (16 bp):
ATTTTAATATTTTATT
Found at i:119250278 original size:25 final size:22
Alignment explanation
Indices: 119250227--119250281 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
119250217 TATTATTTTA
* *
119250227 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
119250249 TGTATATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
119250273 TCGTATATA
1 T-GTATATA
119250282 GCTTGGCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.43
24 9 0.32
25 7 0.25
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:119255749 original size:16 final size:16
Alignment explanation
Indices: 119255718--119255793 Score: 107
Period size: 16 Copynumber: 4.8 Consensus size: 16
119255708 AAACACAAGA
*
119255718 ATTCTATTACAGCTCT
1 ATTCCATTACAGCTCT
* *
119255734 ATTCCATCACAACTCT
1 ATTCCATTACAGCTCT
*
119255750 ATTCCATTACAGTTCT
1 ATTCCATTACAGCTCT
*
119255766 ATTCAATTACAGCTCT
1 ATTCCATTACAGCTCT
119255782 ATTCCATTACAG
1 ATTCCATTACAG
119255794 TGAACCAAAC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.29, C:0.28, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTCCATTACAGCTCT
Found at i:119256957 original size:25 final size:25
Alignment explanation
Indices: 119256929--119256992 Score: 62
Period size: 23 Copynumber: 2.7 Consensus size: 25
119256919 GAAAGTGATT
119256929 AAATTATATATTTTTATGATAGTAA
1 AAATTATATATTTTTATGATAGTAA
* * **
119256954 AAA-TATA-ATTTTTTTTATTTTAA
1 AAATTATATATTTTTATGATAGTAA
*
119256977 TAATT-TATATTTTTAT
1 AAATTATATATTTTTAT
119256993 AAATTTTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
23 16 0.52
24 12 0.39
25 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (25 bp):
AAATTATATATTTTTATGATAGTAA
Found at i:119257056 original size:7 final size:7
Alignment explanation
Indices: 119257037--119257083 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
119257027 TTAGAGGAAT
*
119257037 TAAAGTA
1 TAAATTA
119257044 TAAATT-
1 TAAATTA
119257050 TATAATTA
1 TA-AATTA
*
119257058 TTAATTTA
1 -TAAATTA
119257066 TAAATTA
1 TAAATTA
119257073 TAAATTA
1 TAAATTA
119257080 TAAA
1 TAAA
119257084 AAAAACATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
6 2 0.06
7 26 0.76
8 4 0.12
9 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (7 bp):
TAAATTA
Found at i:119257060 original size:22 final size:22
Alignment explanation
Indices: 119257035--119257080 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
119257025 TTTTAGAGGA
119257035 ATTAAAGTATAAATT-TATAATT
1 ATTAAAGTATAAATTATA-AATT
**
119257057 ATTAATTTATAAATTATAAATT
1 ATTAAAGTATAAATTATAAATT
119257079 AT
1 AT
119257081 AAAAAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTAAAGTATAAATTATAAATT
Found at i:119259423 original size:20 final size:22
Alignment explanation
Indices: 119259392--119259445 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
119259382 ATATGCTACT
119259392 TGACA-AATTTATTCA-GAA-TG
1 TGACATAA-TTATTCACGAATTG
*
119259412 TGACATAATTA-TCACTAATTTG
1 TGACATAATTATTCACGAA-TTG
119259434 TGACATAATTAT
1 TGACATAATTAT
119259446 CACTAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 2 0.07
22 13 0.46
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (22 bp):
TGACATAATTATTCACGAATTG
Found at i:119259436 original size:22 final size:22
Alignment explanation
Indices: 119259410--119259451 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
119259400 TTATTCAGAA
119259410 TGTGACATAATTATCACTAATT
1 TGTGACATAATTATCACTAATT
119259432 TGTGACATAATTATCACTAA
1 TGTGACATAATTATCACTAA
119259452 AAATATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (22 bp):
TGTGACATAATTATCACTAATT
Found at i:119259719 original size:2 final size:2
Alignment explanation
Indices: 119259714--119259738 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119259704 TTTTAAAGCA
119259714 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
119259739 AAGACAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119261126 original size:20 final size:19
Alignment explanation
Indices: 119261081--119261120 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
119261071 TATAAAATCT
119261081 TTCATTAAAAATTGTAATA
1 TTCATTAAAAATTGTAATA
*
119261100 TTCATTAAAAATTTTAATA
1 TTCATTAAAAATTGTAATA
119261119 TT
1 TT
119261121 TGATTAGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (19 bp):
TTCATTAAAAATTGTAATA
Found at i:119266583 original size:20 final size:20
Alignment explanation
Indices: 119266555--119266597 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
119266545 TATTTATGTT
*
119266555 AATTTATTTTTAT-TGTTAA
1 AATTTATTTTTATATATTAA
119266574 AATTTAATTTTTATATATTAA
1 AATTT-ATTTTTATATATTAA
119266595 AAT
1 AAT
119266598 AAAATGCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 8 0.38
21 8 0.38
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
AATTTATTTTTATATATTAA
Found at i:119267067 original size:25 final size:26
Alignment explanation
Indices: 119267009--119267069 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 26
119266999 AATGAAAATG
*
119267009 ATTAATAAATAAT-TTTTTATCTATAA
1 ATTAATAAA-AATATTTTTATATATAA
119267035 A--AAT-AAAATATTTTTATATA-AA
1 ATTAATAAAAATATTTTTATATATAA
119267057 ATTAATAAAAATA
1 ATTAATAAAAATA
119267070 CATATTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 6 0.20
23 11 0.37
24 6 0.20
25 6 0.20
26 1 0.03
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
ATTAATAAAAATATTTTTATATATAA
Found at i:119270329 original size:16 final size:16
Alignment explanation
Indices: 119270296--119270329 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
119270286 TCGATGTGTT
* *
119270296 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
119270312 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
119270328 AA
1 AA
119270330 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:119273155 original size:21 final size:21
Alignment explanation
Indices: 119273129--119273169 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
119273119 AGACGAGCAA
* *
119273129 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
119273150 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
119273170 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Done.