Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 360 of 373
Found at i:119275108 original size:16 final size:16
Alignment explanation
Indices: 119275075--119275108 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
119275065 GGAGATTGTT
* *
119275075 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
119275091 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
119275107 AA
1 AA
119275109 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:119276965 original size:17 final size:17
Alignment explanation
Indices: 119276945--119276979 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
119276935 ACTAAACCGA
119276945 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
119276962 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
119276979 C
1 C
119276980 TACTTGCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:119276990 original size:41 final size:41
Alignment explanation
Indices: 119276945--119277028 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
119276935 ACTAAACCGA
* *
119276945 CCACTAACTCCATCACCCCACTAACTCCATCACCCTACTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCCACTTG
* * *
119276986 CCACTAATTCTATCACCCCACTAACCCCATTACCCCACTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCCACTTG
119277027 CC
1 CC
119277029 TAGGAAAAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.26, C:0.49, G:0.02, T:0.23
Consensus pattern (41 bp):
CCACTAACTCCATCACCCCACTAACCCCATCACCCCACTTG
Found at i:119278100 original size:18 final size:18
Alignment explanation
Indices: 119278077--119278111 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
119278067 TGTAATATCG
119278077 TTGATAAATGGTGTAATA
1 TTGATAAATGGTGTAATA
119278095 TTGATAAATGGTGTAAT
1 TTGATAAATGGTGTAAT
119278112 GTATTAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (18 bp):
TTGATAAATGGTGTAATA
Found at i:119280378 original size:31 final size:30
Alignment explanation
Indices: 119280325--119280382 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
119280315 TATAAAATGG
* *
119280325 TTAAATTTTAATTTGATATTTATATTTCAC
1 TTAAATTTAAATTTAATATTTATATTTCAC
*
119280355 TTAAATTATAAATTTAATCTTTATATTT
1 TTAAATT-TAAATTTAATATTTATATTT
119280383 TATGTAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 7 0.29
31 17 0.71
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (30 bp):
TTAAATTTAAATTTAATATTTATATTTCAC
Found at i:119280469 original size:11 final size:11
Alignment explanation
Indices: 119280453--119280484 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
119280443 ATCGAATTCG
119280453 TAAATATTTAA
1 TAAATATTTAA
119280464 TAAATATTTAA
1 TAAATATTTAA
119280475 TAAATATTTA
1 TAAATATTTA
119280485 TGAAGTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAATATTTAA
Found at i:119281838 original size:41 final size:40
Alignment explanation
Indices: 119281781--119281879 Score: 137
Period size: 41 Copynumber: 2.5 Consensus size: 40
119281771 TTCGGTTTAA
* *
119281781 CTGATGAGATATTGGGTGTCAATTTACTACTTCGAATTTAT
1 CTGATGAGACACTGGGTGTCAATTTACTACTTCGAA-TTAT
*
119281822 -TCGATGAGACACTGGGTGTCAATTTACTCCTTCGAATTAT
1 CT-GATGAGACACTGGGTGTCAATTTACTACTTCGAATTAT
*
119281862 CTGATGAGGCACTGGGTG
1 CTGATGAGACACTGGGTG
119281880 CCAAACTGGT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
40 20 0.38
41 32 0.62
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (40 bp):
CTGATGAGACACTGGGTGTCAATTTACTACTTCGAATTAT
Found at i:119290483 original size:25 final size:25
Alignment explanation
Indices: 119290455--119290505 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
119290445 TATAAAATTT
** *
119290455 TAAATTAAATTAATAATGATAAAAA
1 TAAATTAAACCAAAAATGATAAAAA
*
119290480 TAAATTAACCCAAAAATGATAAAAA
1 TAAATTAAACCAAAAATGATAAAAA
119290505 T
1 T
119290506 CTAAAAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (25 bp):
TAAATTAAACCAAAAATGATAAAAA
Found at i:119298440 original size:11 final size:11
Alignment explanation
Indices: 119298402--119298439 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
119298392 TTCTAACATA
119298402 ATTTAGTAAAT
1 ATTTAGTAAAT
119298413 ATTTAGTAAAT
1 ATTTAGTAAAT
*
119298424 ATTTATTAAAT
1 ATTTAGTAAAT
119298435 ATTTA
1 ATTTA
119298440 TGAGTCTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (11 bp):
ATTTAGTAAAT
Found at i:119299060 original size:5 final size:5
Alignment explanation
Indices: 119299046--119299082 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
119299036 ATTATTAGAT
119299046 TATTA TTATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA -TATTA TATTA TATTA TATTA TATTA TATTA T
119299083 TAAATAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:119300035 original size:18 final size:19
Alignment explanation
Indices: 119300000--119300038 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
119299990 TGAGTATTGA
119300000 TATTGAATTGAATGAAAATG
1 TATTGAATTG-ATGAAAATG
119300020 TATTGAATTG-TGAAAATG
1 TATTGAATTGATGAAAATG
119300038 T
1 T
119300039 GTGAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (19 bp):
TATTGAATTGATGAAAATG
Found at i:119303221 original size:21 final size:22
Alignment explanation
Indices: 119303192--119303238 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
119303182 CAGAAGGAGT
*
119303192 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
119303214 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
119303235 GAGT
1 GAGT
119303239 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:119307604 original size:21 final size:21
Alignment explanation
Indices: 119307552--119307660 Score: 137
Period size: 21 Copynumber: 5.1 Consensus size: 21
119307542 GGCTTTACCA
*
119307552 ATTAGGCACTTTATGTGTCGT
1 ATTAGGCACCTTATGTGTCGT
119307573 ATTTTAGGCACCTTATGTGTCGT
1 A--TTAGGCACCTTATGTGTCGT
* *
119307596 ATCAGGCACCTTGTGTGTCGT
1 ATTAGGCACCTTATGTGTCGT
**
119307617 ATTAGGCACCTCGTGTGTCGT
1 ATTAGGCACCTTATGTGTCGT
* *
119307638 TTTAGGCACTTTATGTGTCGT
1 ATTAGGCACCTTATGTGTCGT
119307659 AT
1 AT
119307661 ACTGATCAGG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
21 56 0.74
23 20 0.26
ACGTcount: A:0.17, C:0.18, G:0.25, T:0.40
Consensus pattern (21 bp):
ATTAGGCACCTTATGTGTCGT
Found at i:119310060 original size:3 final size:3
Alignment explanation
Indices: 119310052--119310082 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
119310042 TTTTAGTCCT
*
119310052 TTC TTC TTC TTC TTC TTC TTC TTC CTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
119310083 CTGTATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:119317342 original size:20 final size:20
Alignment explanation
Indices: 119317317--119317355 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
119317307 CCACATATAA
119317317 ATATCTTAAAAATAAAATAT
1 ATATCTTAAAAATAAAATAT
*
119317337 ATATCTTAAAATTAAAATA
1 ATATCTTAAAAATAAAATA
119317356 CAACTATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATCTTAAAAATAAAATAT
Found at i:119329276 original size:21 final size:21
Alignment explanation
Indices: 119329250--119329292 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
119329240 GGTGAAGAAA
119329250 GCATATCACCAGGATTAGTTG
1 GCATATCACCAGGATTAGTTG
*
119329271 GCATATCACCTGGATTAGTTG
1 GCATATCACCAGGATTAGTTG
119329292 G
1 G
119329293 ACCCATGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (21 bp):
GCATATCACCAGGATTAGTTG
Found at i:119332844 original size:11 final size:11
Alignment explanation
Indices: 119332810--119332850 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
119332800 TTATAATTAC
119332810 TTATTTTAAAA
1 TTATTTTAAAA
119332821 TT-TTATATAAAA
1 TTATT-T-TAAAA
119332833 TTATTTTAAAA
1 TTATTTTAAAA
119332844 TTATTTT
1 TTATTTT
119332851 TTTACATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 2 0.07
11 15 0.56
12 8 0.30
13 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATTTTAAAA
Found at i:119335575 original size:66 final size:66
Alignment explanation
Indices: 119335469--119335600 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
119335459 TTTGTAAGTT
119335469 TTAGATCAAGACACATATATTAACGAGTGTAACATTACACGTGCATGCAATGAGACATGTGAAAC
1 TTAGATCAAGACACATATATTAACGAGTGTAACATTACACGTGCATGCAATGAGACATGTGAAAC
119335534 C
66 C
119335535 TTAGATCAAGACACATATATTAACGAGTGTAACATTACACGTGCATGCAATGAGACATGTGAAAC
1 TTAGATCAAGACACATATATTAACGAGTGTAACATTACACGTGCATGCAATGAGACATGTGAAAC
119335600 C
66 C
119335601 ATCTTTGGCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (66 bp):
TTAGATCAAGACACATATATTAACGAGTGTAACATTACACGTGCATGCAATGAGACATGTGAAAC
C
Found at i:119342170 original size:29 final size:29
Alignment explanation
Indices: 119342135--119342190 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
119342125 TCAAAACCTA
119342135 CTTTTAGCATATTTGTGATACCCAAAACG
1 CTTTTAGCATATTTGTGATACCCAAAACG
119342164 CTTTTAGCATATTTGTGATACCCAAAA
1 CTTTTAGCATATTTGTGATACCCAAAA
119342191 AGAATGAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (29 bp):
CTTTTAGCATATTTGTGATACCCAAAACG
Found at i:119352127 original size:3 final size:3
Alignment explanation
Indices: 119352119--119352146 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
119352109 CATTGCTGTA
119352119 GCT GCT GCT GCT GCT GCT GCT GCT GCT G
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT G
119352147 GTAGTCCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32
Consensus pattern (3 bp):
GCT
Found at i:119352243 original size:33 final size:32
Alignment explanation
Indices: 119352206--119352285 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 32
119352196 CCCCATTTGG
119352206 CCCATTTGACCCATATTGTAACCCATCTGACCA
1 CCCATTTGACCCATATT-TAACCCATCTGACCA
* ** * *
119352239 CCCATCTGACCACCCATTTGACCCATCTGACGA
1 CCCATTTGACC-CATATTTAACCCATCTGACCA
*
119352272 CCCATTTGGCCCAT
1 CCCATTTGACCCAT
119352286 CTGCCCCATA
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
32 1 0.03
33 32 0.86
34 4 0.11
ACGTcount: A:0.24, C:0.40, G:0.11, T:0.25
Consensus pattern (32 bp):
CCCATTTGACCCATATTTAACCCATCTGACCA
Found at i:119352264 original size:21 final size:21
Alignment explanation
Indices: 119352238--119352288 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
119352228 CCATCTGACC
119352238 ACCCATCTGACCACCCATTTG
1 ACCCATCTGACCACCCATTTG
*
119352259 ACCCATCTGACGACCCATTTG
1 ACCCATCTGACCACCCATTTG
*
119352280 GCCCATCTG
1 ACCCATCTG
119352289 CCCCATATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.41, G:0.14, T:0.24
Consensus pattern (21 bp):
ACCCATCTGACCACCCATTTG
Found at i:119352276 original size:12 final size:12
Alignment explanation
Indices: 119352226--119352261 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
119352216 CCATATTGTA
119352226 ACCCATCTGACC
1 ACCCATCTGACC
119352238 ACCCATCTGACC
1 ACCCATCTGACC
*
119352250 ACCCATTTGACC
1 ACCCATCTGACC
119352262 CATCTGACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.25, C:0.47, G:0.08, T:0.19
Consensus pattern (12 bp):
ACCCATCTGACC
Found at i:119352929 original size:12 final size:12
Alignment explanation
Indices: 119352914--119352967 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
119352904 TTCATCATCA
*
119352914 TCATCATCGAAC
1 TCATCATCAAAC
*
119352926 TCATCATCAAAT
1 TCATCATCAAAC
*
119352938 TCATCATCGAAC
1 TCATCATCAAAC
*
119352950 TCATCACCAAAC
1 TCATCATCAAAC
119352962 TCATCA
1 TCATCA
119352968 AAATCACAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.37, C:0.33, G:0.04, T:0.26
Consensus pattern (12 bp):
TCATCATCAAAC
Found at i:119352941 original size:24 final size:24
Alignment explanation
Indices: 119352914--119352967 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
119352904 TTCATCATCA
* *
119352914 TCATCATCGAACTCATCATCAAAT
1 TCATCATCGAACTCATCACCAAAC
119352938 TCATCATCGAACTCATCACCAAAC
1 TCATCATCGAACTCATCACCAAAC
119352962 TCATCA
1 TCATCA
119352968 AAATCACAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.37, C:0.33, G:0.04, T:0.26
Consensus pattern (24 bp):
TCATCATCGAACTCATCACCAAAC
Found at i:119353751 original size:12 final size:12
Alignment explanation
Indices: 119353734--119353764 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
119353724 AGAAAGAAAA
119353734 AGACAGACAAAG
1 AGACAGACAAAG
*
119353746 AGACAGACAGAG
1 AGACAGACAAAG
119353758 AGACAGA
1 AGACAGA
119353765 AGATGAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.16, G:0.29, T:0.00
Consensus pattern (12 bp):
AGACAGACAAAG
Found at i:119355148 original size:46 final size:46
Alignment explanation
Indices: 119355096--119355193 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
119355086 AAATGATGAT
*
119355096 ACTTTGTCAAGAATGCAACAACATTGGAGAATTCTTTTGTGGCTTA
1 ACTTTGTCAAGAATACAACAACATTGGAGAATTCTTTTGTGGCTTA
* * *
119355142 ACTTTGTCAGGAATACAATAACATTGGAGTATTCTTTTGTGGCTTA
1 ACTTTGTCAAGAATACAACAACATTGGAGAATTCTTTTGTGGCTTA
119355188 ACTTTG
1 ACTTTG
119355194 CGGCAACATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (46 bp):
ACTTTGTCAAGAATACAACAACATTGGAGAATTCTTTTGTGGCTTA
Found at i:119356157 original size:16 final size:17
Alignment explanation
Indices: 119356133--119356181 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
119356123 TTTTAATTTA
119356133 TTAAATAAAA-ATTATC
1 TTAAATAAAATATTATC
*
119356149 TTAATTAAAATATTAT-
1 TTAAATAAAATATTATC
*
119356165 TTCAATAAAATAATTAT
1 TTAAATAAAAT-ATTAT
119356182 ATTTCACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAAATAAAATATTATC
Found at i:119356200 original size:21 final size:18
Alignment explanation
Indices: 119356155--119356204 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
119356145 TATCTTAATT
119356155 AAAATATTATTTCAATAAA
1 AAAAT-TTATTTCAATAAA
*
119356174 ATAATTATATTTCACATTAAA
1 AAAATT-TATTTCA-A-TAAA
119356195 AAAATTTATT
1 AAAATTTATT
119356205 AATCGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 1 0.04
19 11 0.42
20 5 0.19
21 9 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATTTATTTCAATAAA
Found at i:119359669 original size:4 final size:4
Alignment explanation
Indices: 119359660--119359692 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
119359650 AGCAAACGTG
119359660 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
119359693 TAGAAAAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:119367310 original size:23 final size:24
Alignment explanation
Indices: 119367279--119367326 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
119367269 TAGAGGTTTG
*
119367279 AATTCTATTTTTCCAAAATAA-TAT
1 AATTCTA-TTTTACAAAATAACTAT
119367303 AATT-TATTTTACAAAATAACTAT
1 AATTCTATTTTACAAAATAACTAT
119367326 A
1 A
119367327 TTTTCATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 6 0.27
24 4 0.18
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (24 bp):
AATTCTATTTTACAAAATAACTAT
Found at i:119370765 original size:9 final size:9
Alignment explanation
Indices: 119370751--119370780 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
119370741 CAATGTTCAT
119370751 TTAACTGAA
1 TTAACTGAA
119370760 TTAACTGAA
1 TTAACTGAA
119370769 TTAACTGAA
1 TTAACTGAA
119370778 TTA
1 TTA
119370781 GTAATAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (9 bp):
TTAACTGAA
Found at i:119379248 original size:12 final size:12
Alignment explanation
Indices: 119379231--119379256 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
119379221 TAATTTTTTT
119379231 AAAAAATTATAA
1 AAAAAATTATAA
119379243 AAAAAATTATAA
1 AAAAAATTATAA
119379255 AA
1 AA
119379257 TTTAATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAATTATAA
Found at i:119380394 original size:99 final size:99
Alignment explanation
Indices: 119380209--119380404 Score: 320
Period size: 99 Copynumber: 2.0 Consensus size: 99
119380199 CCCCCCTTTC
* * * *
119380209 TTCTCTTATTTCTAAATTATTGTCGTTATTTTGAGCCTCGAGGTCTAACTCGATGACTGTATTAT
1 TTCTCTTATTTCTAAATCATTGTCGTTATTTTGAGCCTCGAAGTCTAACTCAATAACTGTATTAT
* *
119380274 CTAACTCAATGGGTTGGCTCACAGGATCACCAAG
66 CTAACTCAATGAGTTGACTCACAGGATCACCAAG
* *
119380308 TTCTGTTATTTCTAAATCATTGTCGTTATTTTGAGCCTCGAAGTTTAACTCAATAACTGTATTAT
1 TTCTCTTATTTCTAAATCATTGTCGTTATTTTGAGCCTCGAAGTCTAACTCAATAACTGTATTAT
119380373 CTAACTCAATGAGTTGACTCACAGGATCACCA
66 CTAACTCAATGAGTTGACTCACAGGATCACCA
119380405 GGTTGAGTAG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 89 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (99 bp):
TTCTCTTATTTCTAAATCATTGTCGTTATTTTGAGCCTCGAAGTCTAACTCAATAACTGTATTAT
CTAACTCAATGAGTTGACTCACAGGATCACCAAG
Found at i:119384880 original size:14 final size:16
Alignment explanation
Indices: 119384861--119384893 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
119384851 AATTTTTTTA
119384861 TTTTTA-ATTAA-TTT
1 TTTTTATATTAACTTT
119384875 TTTTTATATTAACTTT
1 TTTTTATATTAACTTT
119384891 TTT
1 TTT
119384894 GCTTAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTATATTAACTTT
Found at i:119388847 original size:50 final size:50
Alignment explanation
Indices: 119388732--119388974 Score: 378
Period size: 50 Copynumber: 4.8 Consensus size: 50
119388722 GATAATAACA
* ** * *
119388732 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
119388783 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
119388833 TGCCAACGCCATGTCCCAGACGTGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
119388883 TGCCAATGCCATGTCTCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
119388933 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
119388975 TTACCCAAAT
Statistics
Matches: 175, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 142 0.81
51 33 0.19
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:119389090 original size:13 final size:13
Alignment explanation
Indices: 119389069--119389099 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
119389059 GCTTAGATCA
*
119389069 TCATCAAATAAAT
1 TCATAAAATAAAT
119389082 TCATAAAATAAAT
1 TCATAAAATAAAT
119389095 TCATA
1 TCATA
119389100 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:119394269 original size:29 final size:29
Alignment explanation
Indices: 119394227--119394285 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
119394217 TTAACGAAAG
119394227 TTAATAGTTAAATGATAAAAATATAACAA
1 TTAATAGTTAAATGATAAAAATATAACAA
119394256 TTAATAGTTAAATGATAAAAATATAACAA
1 TTAATAGTTAAATGATAAAAATATAACAA
119394285 T
1 T
119394286 CTGATAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (29 bp):
TTAATAGTTAAATGATAAAAATATAACAA
Found at i:119395359 original size:48 final size:48
Alignment explanation
Indices: 119395288--119395386 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
119395278 GAGAAAACAA
119395288 CATTTTATAAGCCACCATCACATGTAAACAAAGAGAAAAGGAATCTAC
1 CATTTTATAAGCCACCATCACATGTAAACAAAGAGAAAAGGAATCTAC
*
119395336 CATTTTATAAGCCATCATCACATGTAAACAAAGAGAAAAGGAATCTAC
1 CATTTTATAAGCCACCATCACATGTAAACAAAGAGAAAAGGAATCTAC
119395384 CAT
1 CAT
119395387 ATGAAAAGAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.45, C:0.20, G:0.12, T:0.22
Consensus pattern (48 bp):
CATTTTATAAGCCACCATCACATGTAAACAAAGAGAAAAGGAATCTAC
Found at i:119400150 original size:6 final size:6
Alignment explanation
Indices: 119400139--119400166 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
119400129 TAAAGTGAGA
119400139 TGGTGT TGGTGT TGGTGT TGGTGT TGGT
1 TGGTGT TGGTGT TGGTGT TGGTGT TGGT
119400167 CACTACTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (6 bp):
TGGTGT
Found at i:119404197 original size:20 final size:20
Alignment explanation
Indices: 119404172--119404214 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
119404162 CTCAGTATTC
119404172 TTATCCTGAATTTTAGGATT
1 TTATCCTGAATTTTAGGATT
*
119404192 TTATCCTGAATTTTAGTATT
1 TTATCCTGAATTTTAGGATT
119404212 TTA
1 TTA
119404215 ATTTGGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (20 bp):
TTATCCTGAATTTTAGGATT
Found at i:119405653 original size:70 final size:70
Alignment explanation
Indices: 119405540--119405680 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
119405530 GCCTATCCAC
119405540 ATACAAAAATCAAAGAATAAAACAAAATATTAACCCAATTACATGAGACACGCTCCATACCCATG
1 ATACAAAAATCAAAGAATAAAACAAAATATTAACCCAATTACATGAGACACGCTCCATACCCATG
119405605 GCCCA
66 GCCCA
*
119405610 ATACAAAAATCAAAGAATAAAACAAAATATTAACCCAATTACATTAGACACGCTCCATACCCATG
1 ATACAAAAATCAAAGAATAAAACAAAATATTAACCCAATTACATGAGACACGCTCCATACCCATG
119405675 GCCCA
66 GCCCA
119405680 A
1 A
119405681 AATCTAAGTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.49, C:0.26, G:0.08, T:0.18
Consensus pattern (70 bp):
ATACAAAAATCAAAGAATAAAACAAAATATTAACCCAATTACATGAGACACGCTCCATACCCATG
GCCCA
Found at i:119406210 original size:16 final size:16
Alignment explanation
Indices: 119406189--119406245 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
119406179 TTTGGTTCGC
*
119406189 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
119406205 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
119406221 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
119406237 TGTAATGGA
1 TGTAATGGA
119406246 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:119415825 original size:21 final size:21
Alignment explanation
Indices: 119415799--119415881 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
119415789 TGATCAGTAT
*
119415799 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
119415820 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* * *
119415841 ACGACACACGAGGTGCTTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
119415863 TACGACACATAAAGTGCCT
1 -ACGACACACAAAGTGCCT
119415882 GATCAGTAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
21 33 0.69
22 1 0.02
23 14 0.29
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:119415849 original size:23 final size:22
Alignment explanation
Indices: 119415797--119415871 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
119415787 CCTGATCAGT
** *
119415797 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
119415818 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
*
119415839 ATACGACACACGAGGTGCTTGAA
1 ATACGACACACGAGGTGCCTG-A
119415862 ATACGACACA
1 ATACGACACA
119415872 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 35 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:119423787 original size:23 final size:23
Alignment explanation
Indices: 119423705--119423791 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
119423695 CCTGATCAGT
*
119423705 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
119423727 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
119423747 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
119423770 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
119423792 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:119430621 original size:177 final size:177
Alignment explanation
Indices: 119430325--119430841 Score: 797
Period size: 177 Copynumber: 2.9 Consensus size: 177
119430315 GCGACATCGG
*
119430325 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGTAAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATC
* *
119430390 TTCATGTATCAGCTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCAAAGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCAAAGAGC
*
119430455 AGGTTGAAGATACAAGTCTTATCTTCCTAAAGTTACAGGAAGCAGAC
131 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGAC
* * *
119430502 TGAAAATTACAGATCTTATCTCCATGTATCGGATATGGAGCAGATCAGAAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATC
*
119430567 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCAGAGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCAAAGAGC
* *
119430632 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGTAGAC
131 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGAC
* * *
119430679 TGAAAATTACAGATCTTATCTCTATGTATCGGCT-TGGAGCAGATAAAAAATGGCTAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATC
* * * * **
119430743 TCCATGTATCGGCTATGGAGTAGATTTTAGCCA-CAGGCCCTGTCTCTCTGAAGTTGCAGCGGAG
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCA-AAGAG
* **
119430807 CAAGTTGAAG-TCACAAACCTTATCTTCCTGAAGTT
130 CAGGTTGAAGAT-ACAAGTCTTATCTTCCTGAAGTT
119430842 GCTATAGGAC
Statistics
Matches: 314, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
175 23 0.07
176 92 0.29
177 199 0.63
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (177 bp):
TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATC
TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCAAAGAGC
AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGAC
Found at i:119436809 original size:15 final size:15
Alignment explanation
Indices: 119436767--119436809 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
119436757 CCCGGCCCGT
119436767 AAAATAAATAAATACAA
1 AAAAT-AATAAA-ACAA
*
119436784 AAAA-AACAAAACAA
1 AAAATAATAAAACAA
119436798 AAAATAATAAAA
1 AAAATAATAAAA
119436810 GTCCTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 8 0.35
15 11 0.48
17 4 0.17
ACGTcount: A:0.81, C:0.07, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAATAATAAAACAA
Found at i:119438095 original size:12 final size:12
Alignment explanation
Indices: 119438078--119438252 Score: 99
Period size: 12 Copynumber: 15.1 Consensus size: 12
119438068 GAATGTAAAA
119438078 ATTATTATATAT
1 ATTATTATATAT
119438090 ATTATT-T-T-T
1 ATTATTATATAT
*
119438099 ATTTTTATAT-T
1 ATTATTATATAT
119438110 A-T-TTAT-TAT
1 ATTATTATATAT
119438119 ATTATT-TATAT
1 ATTATTATATAT
*
119438130 TTTATTATATAT
1 ATTATTATATAT
* *
119438142 TTTGATTTATACAT
1 ATT-A-TTATATAT
*
119438156 TTTATTATATAT
1 ATTATTATATAT
119438168 CATTTTATTATATAT
1 -A--TTATTATATAT
119438183 ATTATTCAT-TAT
1 ATTATT-ATATAT
*
119438195 ATT-TTTTATAT
1 ATTATTATATAT
*
119438206 -TTTTTAT-TAT
1 ATTATTATATAT
119438216 A-TATTATATA-
1 ATTATTATATAT
*
119438226 ATTATTTATTATTT
1 ATTA-TTA-TATAT
*
119438240 ATTATTATGTAT
1 ATTATTATATAT
119438252 A
1 A
119438253 ATTTTAAAAA
Statistics
Matches: 131, Mismatches: 11, Indels: 42
0.71 0.06 0.23
Matches are distributed among these distances:
8 1 0.01
9 12 0.09
10 17 0.13
11 26 0.20
12 39 0.30
13 10 0.08
14 15 0.11
15 11 0.08
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:119438107 original size:21 final size:21
Alignment explanation
Indices: 119438080--119438244 Score: 93
Period size: 22 Copynumber: 8.0 Consensus size: 21
119438070 ATGTAAAAAT
*
119438080 TATTATATATATTA-TT-TT-
1 TATTATTTATATTATTTATTA
119438098 TATT-TTTATATTATTTATTA
1 TATTATTTATATTATTTATTA
*
119438118 TATTATTTATATTTTATTATATA
1 TATTATTTATATTAT-TTAT-TA
* *
119438141 TTTTGATTTATA-CATTTTATTA
1 TATT-ATTTATATTA-TTTATTA
119438163 TATATCATTT-TATTA--TA-TA
1 TAT-T-ATTTATATTATTTATTA
* *
119438182 TATTATTCAT-TATATTTTTTA
1 TATTATTTATAT-TATTTATTA
*
119438203 TATT-TTT-TATTATATATTA
1 TATTATTTATATTATTTATTA
* *
119438222 TATAATTATTTATTATTTATTA
1 TATTATT-TATATTATTTATTA
119438244 T
1 T
119438245 TATGTATAAT
Statistics
Matches: 113, Mismatches: 15, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
17 12 0.11
18 10 0.09
19 18 0.16
20 12 0.11
21 16 0.14
22 22 0.19
23 15 0.13
24 8 0.07
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (21 bp):
TATTATTTATATTATTTATTA
Found at i:119438116 original size:7 final size:7
Alignment explanation
Indices: 119438079--119438245 Score: 74
Period size: 7 Copynumber: 22.1 Consensus size: 7
119438069 AATGTAAAAA
119438079 TTATTAT
1 TTATTAT
119438086 ATATATTAT
1 -T-TATTAT
119438095 TT-TTAT
1 TTATTAT
119438101 TT-TTAT
1 TTATTAT
119438107 ATTATTTAT
1 -TTA-TTAT
119438116 TATATTAT
1 T-TATTAT
119438124 TTA-TATT
1 TTATTA-T
119438131 TTATTAT
1 TTATTAT
*
119438138 ATATTTTGAT
1 -T-TATT-AT
*
119438148 TTATACATT
1 TTAT-TA-T
119438157 TTATTAT
1 TTATTAT
* *
119438164 ATATCATT
1 TTATTA-T
119438172 TTATTAT
1 TTATTAT
119438179 ATATATTAT
1 -T-TATTAT
*
119438188 TCATTAT
1 TTATTAT
119438195 ATT-TT-T
1 -TTATTAT
*
119438201 TATATTTT
1 T-TATTAT
119438209 TTATTAT
1 TTATTAT
*
119438216 ATATTAT
1 TTATTAT
*
119438223 ATAATTAT
1 -TTATTAT
119438231 TTATTAT
1 TTATTAT
119438238 TTATTAT
1 TTATTAT
119438245 T
1 T
119438246 ATGTATAATT
Statistics
Matches: 124, Mismatches: 15, Indels: 41
0.69 0.08 0.23
Matches are distributed among these distances:
5 1 0.01
6 14 0.11
7 50 0.40
8 30 0.24
9 27 0.22
10 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.66
Consensus pattern (7 bp):
TTATTAT
Found at i:119438162 original size:52 final size:52
Alignment explanation
Indices: 119438078--119438238 Score: 170
Period size: 52 Copynumber: 3.1 Consensus size: 52
119438068 GAATGTAAAA
* * *
119438078 ATTATTATATATATTATTTTTATTTTTATATTATTTATTATATTATT-TATAT
1 ATTATTATATATTTTATTTATATTTTT-TATTATATATTATATTATTATATAT
* ** * *
119438130 TTTATTATATATTTTGATTTATACATTTTATTATATATCATTTTATTATATAT
1 ATTATTATATATTTT-ATTTATATTTTTTATTATATATTATATTATTATATAT
*
119438183 ATTATTCAT-TATATTT-TTTATATTTTTTATTATATATTATATAATTAT-T-T
1 ATTATT-ATATAT-TTTATTTATATTTTTTATTATATATTATATTATTATATAT
119438233 ATTATT
1 ATTATT
119438239 TATTATTATG
Statistics
Matches: 91, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
50 7 0.08
51 1 0.01
52 56 0.62
53 22 0.24
54 5 0.05
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (52 bp):
ATTATTATATATTTTATTTATATTTTTTATTATATATTATATTATTATATAT
Found at i:119438244 original size:57 final size:65
Alignment explanation
Indices: 119438106--119438258 Score: 153
Period size: 67 Copynumber: 2.4 Consensus size: 65
119438096 TTTATTTTTA
* *
119438106 TATTATTTATTATATTATTTATATTTTATTATATATTTTGATTTATACATTTTATTATATATCAT
1 TATTATTTATTAT-TCATTTATATTTTATTATATATTTTGATTTATA-ATATTATTATATATCAT
119438171 TT
64 TT
* *
119438173 TATTATATATATTATTCA-TTATATTTT-TTATAT-TTTTTA-TTAT-ATATTA-TATA-ATTA-
1 TATTAT-T-TATTATTCATTTATATTTTATTATATATTTTGATTTATAATATTATTATATATCAT
119438230 TT
64 TT
*
119438232 TATTATTTATTATT-ATGTATAATTTTA
1 TATTATTTATTATTCATTTAT-ATTTTA
119438259 AAAATTTATA
Statistics
Matches: 76, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
56 1 0.01
57 10 0.13
58 6 0.08
59 8 0.11
60 3 0.04
61 4 0.05
62 5 0.07
64 4 0.05
65 5 0.07
66 6 0.08
67 15 0.20
68 3 0.04
69 6 0.08
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (65 bp):
TATTATTTATTATTCATTTATATTTTATTATATATTTTGATTTATAATATTATTATATATCATTT
Found at i:119438258 original size:25 final size:25
Alignment explanation
Indices: 119438079--119438258 Score: 79
Period size: 29 Copynumber: 6.8 Consensus size: 25
119438069 AATGTAAAAA
*
119438079 TTATTA-TATATATTATTTTTATT-T
1 TTATTATTATATA-TAATTTTATTAT
*
119438103 TTA-TATTAT-T-T-ATTATATTAT
1 TTATTATTATATATAATTTTATTAT
*
119438124 TTA-TATTTTATTATATATTTTGATTTAT
1 TTATTATTATA-TATA-ATTTT-A-TTAT
*
119438152 ACATT-TTATTATATATCATTTTATTAT
1 ---TTATTATTATATATAATTTTATTAT
** *
119438179 ATATATTATTCATTATATTTTTTATATTTT
1 -T-TATTATT-A-TATATAATTT-TATTAT
119438209 TTATTATATATTATATAATTATTTATTAT
1 TTATTAT-TA-TATATAA-T-TTTATTAT
*
119438238 TTATTATTATGTATAATTTTA
1 TTATTATTATATATAATTTTA
119438259 AAAATTTATA
Statistics
Matches: 122, Mismatches: 13, Indels: 41
0.69 0.07 0.23
Matches are distributed among these distances:
20 6 0.05
21 10 0.08
23 4 0.03
24 7 0.06
25 6 0.05
26 6 0.05
27 16 0.13
28 21 0.17
29 28 0.23
30 10 0.08
31 8 0.07
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (25 bp):
TTATTATTATATATAATTTTATTAT
Found at i:119438635 original size:18 final size:18
Alignment explanation
Indices: 119438612--119438646 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
119438602 ATCTCATAAA
*
119438612 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
119438630 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
119438647 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:119445875 original size:30 final size:30
Alignment explanation
Indices: 119445841--119445900 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
119445831 ACTTAATACG
119445841 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
119445871 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
119445901 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:119453075 original size:45 final size:45
Alignment explanation
Indices: 119453023--119453333 Score: 312
Period size: 45 Copynumber: 6.9 Consensus size: 45
119453013 TTAGACGGGG
119453023 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * *
119453068 AGTAGATCGAAGAT-GACAGATTTGGCGTCTC-TGT-ATTAGA-CGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGTTTACATC-GA
* * * *
119453112 AGGAGATCGAAGATAGTAGATCTGGCATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
*
119453157 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * * *
119453202 AGCAGATCGAAGAT-GACAGATTTGACGTCCCTGT-ATTAGA-CGA
1 AGCAGATCGAAGATAG-CAGATCTGACATTCGTGTGTTTACATCGA
* ** *
119453245 GGAGCAGATCAAAGATAGTGGTTCTGACATTCGTGTGTTTACATCGA
1 --AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
*
119453292 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACAT
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACAT
119453334 GTAATGACCC
Statistics
Matches: 212, Mismatches: 41, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
43 6 0.03
44 36 0.17
45 159 0.75
46 8 0.04
47 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
Found at i:119453153 original size:89 final size:90
Alignment explanation
Indices: 119452979--119453170 Score: 305
Period size: 89 Copynumber: 2.1 Consensus size: 90
119452969 AGGGGGCAAT
*
119452979 GTAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGAT
1 GTAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGAT
*
119453044 CTGACATTCGTGTGTTTACATCGAA
66 CTGACATTCATGTGTTTACATCGAA
* * *
119453069 GTAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGAC-GGGAGGAGATCGAAGATAGTAGAT
1 GTAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGAT
*
119453133 CTGGCATTCATGTGTTTACATCGAA
66 CTGACATTCATGTGTTTACATCGAA
* *
119453158 GCAGGTCGAAGAT
1 GTAGATCGAAGAT
119453171 AGCAGATCTG
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 56 0.60
90 38 0.40
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (90 bp):
GTAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGAT
CTGACATTCATGTGTTTACATCGAA
Found at i:119453221 original size:134 final size:135
Alignment explanation
Indices: 119453023--119453333 Score: 525
Period size: 134 Copynumber: 2.3 Consensus size: 135
119453013 TTAGACGGGG
* *
119453023 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGTAGATCGAAGATGACAGA
1 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGA
* * * * *
119453088 TTTGGCGTCTCTGTATTAGACG-GGAGGAGATCGAAGATAGTAGATCTGGCATTCATGTGTTTAC
66 TTTGACGTCCCTGTATTAGACGAGGAGCAGATCAAAGATAGTAGATCTGACATTCATGTGTTTAC
119453152 ATCGA
131 ATCGA
119453157 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGA
1 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGA
* * *
119453222 TTTGACGTCCCTGTATTAGACGAGGAGCAGATCAAAGATAGTGGTTCTGACATTCGTGTGTTTAC
66 TTTGACGTCCCTGTATTAGACGAGGAGCAGATCAAAGATAGTAGATCTGACATTCATGTGTTTAC
119453287 ATCGA
131 ATCGA
119453292 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACAT
1 AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACAT
119453334 GTAATGACCC
Statistics
Matches: 166, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
134 83 0.50
135 83 0.50
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (135 bp):
AGCAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGA
TTTGACGTCCCTGTATTAGACGAGGAGCAGATCAAAGATAGTAGATCTGACATTCATGTGTTTAC
ATCGA
Found at i:119453647 original size:8 final size:8
Alignment explanation
Indices: 119453634--119453662 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
119453624 TTATGTTTAG
119453634 TATATTAT
1 TATATTAT
119453642 TATATTAT
1 TATATTAT
119453650 TATATTAT
1 TATATTAT
119453658 TATAT
1 TATAT
119453663 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:119455014 original size:14 final size:15
Alignment explanation
Indices: 119454986--119455014 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119454976 TTGATTGAAA
119454986 TGATTGAATTTATAT
1 TGATTGAATTTATAT
119455001 TGATTGAA-TTATAT
1 TGATTGAATTTATAT
119455015 AATATATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (15 bp):
TGATTGAATTTATAT
Found at i:119455424 original size:23 final size:23
Alignment explanation
Indices: 119455398--119455458 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 23
119455388 AGGCACTTTA
119455398 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
119455421 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
119455442 TGTGTCGT-TTT-AGGCAC
1 TGTGTCGTATTTCAGGCAC
119455459 TTTATGTGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
21 26 0.72
22 1 0.03
23 9 0.25
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:119455466 original size:21 final size:21
Alignment explanation
Indices: 119455388--119455468 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
119455378 TTTATCGACC
* *
119455388 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGT-TTT
* * *
119455410 CAGGCACCTCGTGTGTCGTATC
1 -AGGCACCTCATGTGTCGTTTT
*
119455432 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
119455453 AGGCACTTTATGTGTC
1 AGGCACCTCATGTGTC
119455469 ATATACTGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
21 32 0.67
22 1 0.02
23 15 0.31
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:119456674 original size:45 final size:45
Alignment explanation
Indices: 119456625--119456770 Score: 118
Period size: 45 Copynumber: 3.2 Consensus size: 45
119456615 TTAGACGGGG
119456625 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * * * *
119456670 AGCAGATCGAAGAT-GACAGATTTGGCGTCTC-TATATTAGACA-AGG
1 AGCAGATCAAAGATAG-CAGATCTGACAT-TCGTGTGTT-TACATCGA
* * * * *
119456715 AGTAGATCAAAAATAGCAGATCTGATATTTGTGTGTTTACATCAA
1 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
119456760 AGCAGATCAAA
1 AGCAGATCAAA
119456771 AATGACAGAT
Statistics
Matches: 71, Mismatches: 24, Indels: 12
0.66 0.22 0.11
Matches are distributed among these distances:
44 5 0.07
45 60 0.85
46 6 0.08
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (45 bp):
AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
Found at i:119456724 original size:90 final size:89
Alignment explanation
Indices: 119456571--119456818 Score: 352
Period size: 90 Copynumber: 2.8 Consensus size: 89
119456561 AGACGTTACA
* *
119456571 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCCCTATATTAGACGGGGAGCAGATCAAA
1 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCGT-CCTATATTAGACGGGGAGTAGATCAAA
119456636 GATAGCAGATCTGACATTCGTGTGT
65 GATAGCAGATCTGACATTCGTGTGT
**
119456661 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTATATTAGACAAGGAGTAGATCAAA
1 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTC-CTATATTAGACGGGGAGTAGATCAAA
* * *
119456726 AATAGCAGATCTGATATTTGTGTGT
65 GATAGCAGATCTGACATTCGTGTGT
* * * * * *
119456751 TTACATCAAAGCAGATCAAAAATGACAGATTTGACGTCCTTGTATTAGGCGGGGAGTAGATCAAA
1 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCC-TATATTAGACGGGGAGTAGATCAAA
119456816 GAT
65 GAT
119456819 TTCAGCATGG
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
89 2 0.01
90 138 0.99
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.26
Consensus pattern (89 bp):
TTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCCTATATTAGACGGGGAGTAGATCAAAG
ATAGCAGATCTGACATTCGTGTGT
Found at i:119458300 original size:16 final size:17
Alignment explanation
Indices: 119458281--119458318 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
119458271 TTTTTAAATT
*
119458281 TTTTATAAT-TTATTTA
1 TTTTATAATATTATATA
119458297 TTTTA-AATATTATATA
1 TTTTATAATATTATATA
119458313 TTTTAT
1 TTTTAT
119458319 TTATTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATAATATTATATA
Found at i:119458304 original size:25 final size:25
Alignment explanation
Indices: 119458272--119458325 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
119458262 TTTTAATCCT
* *
119458272 TTTTAAATTTTTTATAATTTATTTA
1 TTTTAAATATTATATAATTTATTTA
*
119458297 TTTTAAATATTATATATTTTATTTA
1 TTTTAAATATTATATAATTTATTTA
119458322 TTTT
1 TTTT
119458326 TACTATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTAAATATTATATAATTTATTTA
Found at i:119458415 original size:17 final size:17
Alignment explanation
Indices: 119458359--119458504 Score: 56
Period size: 17 Copynumber: 8.4 Consensus size: 17
119458349 GTAAAAATTA
119458359 TTATATATATTATTTTTAT
1 TTAT-TATA-TATTTTTAT
*
119458378 TT-TTATATTTTTTATATT
1 TTATTATATATTTT-TA-T
*
119458396 TTATTATATATTTTGAT
1 TTATTATATATTTTTAT
*
119458413 TTA-TACAT-TTTATTAT
1 TTATTATATATTT-TTAT
* * * *
119458429 ATATCATTTTATTATATAT
1 TTATTA-TATATT-TTTAT
119458448 ATTATTCAT-TATATTTT-T
1 -TTATT-ATATAT-TTTTAT
*
119458466 TTATTATATA-TTATA-
1 TTATTATATATTTTTAT
*
119458481 TAATTATATATTATTTA-
1 TTATTATATATT-TTTAT
119458498 TTATTAT
1 TTATTAT
119458505 GTATAATTTT
Statistics
Matches: 95, Mismatches: 17, Indels: 32
0.66 0.12 0.22
Matches are distributed among these distances:
15 15 0.16
16 17 0.18
17 27 0.28
18 7 0.07
19 22 0.23
20 6 0.06
21 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (17 bp):
TTATTATATATTTTTAT
Found at i:119458428 original size:29 final size:27
Alignment explanation
Indices: 119458356--119458501 Score: 102
Period size: 29 Copynumber: 5.3 Consensus size: 27
119458346 AATGTAAAAA
* *
119458356 TTATTATATATATTATT-TT-TATTTT
1 TTATTATATATTTTATTATTATATATT
* * *
119458381 TATATTTTTTATATT-TTATTATATATT
1 T-TATTATATATTTTATTATTATATATT
*
119458408 TTGATTTATACATTTTATTA-TATATCATT
1 TT-A-TTATATATTTTATTATTATAT-ATT
* *
119458437 TTATTATATATATTATTCATTATATTTTT
1 TTATTATATATTTTATT-ATTATA-TATT
* *
119458466 TTATTATATATTATATAATTATATATTAT
1 TTATTATATATTTTATTATTATATA-T-T
119458495 TTATTAT
1 TTATTAT
119458502 TATGTATAAT
Statistics
Matches: 95, Mismatches: 14, Indels: 20
0.74 0.11 0.16
Matches are distributed among these distances:
25 3 0.03
26 14 0.15
27 20 0.21
28 21 0.22
29 36 0.38
30 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (27 bp):
TTATTATATATTTTATTATTATATATT
Found at i:119458477 original size:7 final size:7
Alignment explanation
Indices: 119458362--119458501 Score: 72
Period size: 7 Copynumber: 21.4 Consensus size: 7
119458352 AAAATTATTA
119458362 TATATAT
1 TATATAT
*
119458369 TAT-TTT
1 TATATAT
*
119458375 TAT-TTT
1 TATATAT
*
119458381 TATATTT
1 TATATAT
*
119458388 TTTATAT
1 TATATAT
119458395 T-T-TAT
1 TATATAT
119458400 TATATAT
1 TATATAT
*
119458407 TTTGAT-T
1 TAT-ATAT
*
119458414 TATACAT
1 TATATAT
119458421 T-T-TAT
1 TATATAT
119458426 TATATAT
1 TATATAT
*
119458433 CAT-T-T
1 TATATAT
119458438 TAT-TA-
1 TATATAT
119458443 TATATAT
1 TATATAT
119458450 TAT-TCAT
1 TATAT-AT
119458457 TATAT-T
1 TATATAT
* *
119458463 TTTTTAT
1 TATATAT
119458470 TATATAT
1 TATATAT
119458477 TATATAAT
1 TATAT-AT
119458485 TATATAT
1 TATATAT
*
119458492 TATTTAT
1 TATATAT
119458499 TAT
1 TAT
119458502 TATGTATAAT
Statistics
Matches: 105, Mismatches: 14, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
5 14 0.13
6 24 0.23
7 57 0.54
8 10 0.10
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (7 bp):
TATATAT
Found at i:119458487 original size:44 final size:45
Alignment explanation
Indices: 119458420--119458504 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
119458410 GATTTATACA
* *
119458420 TTTTATTATATATCATTTTATTATATA-TA-TTATTCATTATATTT
1 TTTTATTATATATCATATAATTATATATTATTTATT-ATTATATTT
*
119458464 TTTTATTATATATTATATAATTATATATTATTTATTATTAT
1 TTTTATTATATATCATATAATTATATATTATTTATTATTAT
119458505 GTATAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 24 0.67
45 7 0.19
46 5 0.14
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (45 bp):
TTTTATTATATATCATATAATTATATATTATTTATTATTATATTT
Found at i:119458905 original size:18 final size:18
Alignment explanation
Indices: 119458882--119458916 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
119458872 ATCTCATAAA
*
119458882 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
119458900 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
119458917 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:119459855 original size:28 final size:27
Alignment explanation
Indices: 119459811--119459881 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
119459801 GTAATTTGAA
* **
119459811 AATCAATTGCACCCTTAGTTGAAAAAT
1 AATCAATTGCACCCTTAATAAAAAAAT
*
119459838 GAATCAATTAG-ACTCTTAATAAAAAAAT
1 -AATCAATT-GCACCCTTAATAAAAAAAT
*
119459866 AATCAATTGAACCCTT
1 AATCAATTGCACCCTT
119459882 CGAATTGTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.03
27 13 0.36
28 21 0.58
29 1 0.03
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (27 bp):
AATCAATTGCACCCTTAATAAAAAAAT
Found at i:119478963 original size:13 final size:13
Alignment explanation
Indices: 119478926--119478976 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
119478916 TTTGGTAATA
119478926 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
119478939 CTGTAGAAAAGTG
1 CTTTTGAAAAGTG
* *
119478952 TTTTTGAGAAGTG
1 CTTTTGAAAAGTG
119478965 CTTTTGAAAAGT
1 CTTTTGAAAAGT
119478977 TTAGTTTAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:119478963 original size:26 final size:26
Alignment explanation
Indices: 119478927--119478976 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
119478917 TTGGTAATAC
119478927 TTTTGAAAAGTGCTGTAGAAAAGTGT
1 TTTTGAAAAGTGCTGTAGAAAAGTGT
* * *
119478953 TTTTGAGAAGTGCTTTTGAAAAGT
1 TTTTGAAAAGTGCTGTAGAAAAGT
119478977 TTAGTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (26 bp):
TTTTGAAAAGTGCTGTAGAAAAGTGT
Found at i:119488824 original size:16 final size:17
Alignment explanation
Indices: 119488800--119488833 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
119488790 TTTCATTTTT
119488800 TAATATATATT-TTAAA
1 TAATATATATTATTAAA
*
119488816 TAATTTATATTATTAAA
1 TAATATATATTATTAAA
119488833 T
1 T
119488834 TACATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATATATATTATTAAA
Found at i:119499044 original size:18 final size:18
Alignment explanation
Indices: 119499021--119499062 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
119499011 AGATAGGGAA
119499021 AGAAAA-AAAAATTAAAAG
1 AGAAAACAAAAATT-AAAG
119499039 AGAAAACAAAAATTAAAG
1 AGAAAACAAAAATTAAAG
119499057 AGAAAA
1 AGAAAA
119499063 TATGGTGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (18 bp):
AGAAAACAAAAATTAAAG
Found at i:119504513 original size:105 final size:105
Alignment explanation
Indices: 119504278--119504591 Score: 317
Period size: 105 Copynumber: 3.0 Consensus size: 105
119504268 TGTGATATTG
* * * * * * * * *
119504278 TCACATATAATATATTGATCGATGCACATTGTAAGGAGGGGATGATTTATAAAGCTGTAGATATC
1 TCACGTATAATATACTGATTGATGCATATTGTAAAGAGGGAATGGTTTCTAAAGCTATAGATATC
* * * * * *
119504343 GTTGATACAATGGGGAAGCAAGGCATTGAACCTAATATTG
66 GTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTA
* * * * *
119504383 TCACGTATAATATATTTATTGATGCATATTGCAAAGAGGGAATGGTTTCTAAAGCTATAGAAACC
1 TCACGTATAATATACTGATTGATGCATATTGTAAAGAGGGAATGGTTTCTAAAGCTATAGATATC
* *
119504448 ATTGACACAATGAGAAAGCAAGGTATTGAGCCTAATGTTA
66 GTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTA
* * * * * *
119504488 TCACGTATAATATACTGGTTTATGCATATTTTAACA-AGGCAATGGTTACTGAAGCTGA-AGATA
1 TCACGTATAATATACTGATTGATGCATATTGTAA-AGAGGGAATGGTTTCTAAAGCT-ATAGATA
* * *
119504551 TTGTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTT
64 TCGTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTT
119504592 GTTACCTATA
Statistics
Matches: 171, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
105 169 0.99
106 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (105 bp):
TCACGTATAATATACTGATTGATGCATATTGTAAAGAGGGAATGGTTTCTAAAGCTATAGATATC
GTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTA
Found at i:119506936 original size:21 final size:19
Alignment explanation
Indices: 119506912--119506983 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 19
119506902 TCTAATTACT
119506912 AATATTTAATTATTATATTTA
1 AATATTTAATTA-TAT-TTTA
*
119506933 AATATTTAAATATATTTTA
1 AATATTTAATTATATTTTA
* *
119506952 TATATTCTAATTAAATTTAATA
1 AATATT-TAATTATATTT--TA
*
119506974 AATAATTAAT
1 AATATTTAAT
119506984 ATTAATTACT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 9 0.21
20 12 0.29
21 15 0.36
22 6 0.14
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (19 bp):
AATATTTAATTATATTTTA
Found at i:119507225 original size:13 final size:13
Alignment explanation
Indices: 119507204--119507235 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
119507194 AAATTTTTCT
119507204 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
119507217 AAAGTACTTCTCA
1 AAAGCACTTCTCA
119507230 AAAGCA
1 AAAGCA
119507236 TTTTTCCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.44, C:0.25, G:0.09, T:0.22
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:119526579 original size:3 final size:3
Alignment explanation
Indices: 119526571--119526612 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
119526561 AAGAATTGCT
119526571 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
119526613 AAGAATTAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:119534141 original size:107 final size:107
Alignment explanation
Indices: 119533945--119534143 Score: 233
Period size: 107 Copynumber: 1.9 Consensus size: 107
119533935 AGGCAATCCA
* * * * *
119533945 GCCTTGACCTAAGATAAACCCTGAACTACTTCGCTATGCAGATCGTTATGTTGTTAAAGAAACCA
1 GCCTTGACCTAACATAAACCCGGAACTACTTCGCTATGCAGATCATTAAGTTGCTAAAGAAACCA
* **
119534010 TGAAACTAGAATCAGATGTTCTCATCTATCCGAAGCAGGTTT
66 GGAAACTAGAATCAGATGACCTCATCTATCCGAAGCAGGTTT
* * * *
119534052 GCCTTGACCGT-ACATAAACCCGGGAA-TACTTTGCTATGCTGATCATTAAGTTGCTAGATAAAC
1 GCCTTGACC-TAACATAAACCC-GGAACTACTTCGCTATGCAGATCATTAAGTTGCTAAAGAAAC
*
119534115 CAGGTAACTAGAATC-GAATGACCTCATCT
64 CAGGAAACTAGAATCAG-ATGACCTCATCT
119534144 GGCTAACCAG
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
106 1 0.01
107 71 0.93
108 4 0.05
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (107 bp):
GCCTTGACCTAACATAAACCCGGAACTACTTCGCTATGCAGATCATTAAGTTGCTAAAGAAACCA
GGAAACTAGAATCAGATGACCTCATCTATCCGAAGCAGGTTT
Found at i:119538160 original size:21 final size:19
Alignment explanation
Indices: 119538134--119538172 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
119538124 GGTTTATTTT
119538134 ATTATATTTACTATTAATATA
1 ATTATATTTA-T-TTAATATA
119538155 ATTATATTTATTTAATAT
1 ATTATATTTATTTAATAT
119538173 TAATAGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTATATTTATTTAATATA
Found at i:119540887 original size:23 final size:23
Alignment explanation
Indices: 119540838--119540887 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
119540828 ATTCGTATGG
* *
119540838 TATTAATTTTTTACAAATATTTA
1 TATTAATTTTATACAAATAGTTA
*
119540861 TATTAATTTTCATACCAATAGTT-
1 TATTAATTTT-ATACAAATAGTTA
119540884 TATT
1 TATT
119540888 GTATATTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (23 bp):
TATTAATTTTATACAAATAGTTA
Found at i:119544838 original size:12 final size:12
Alignment explanation
Indices: 119544823--119544878 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
119544813 CACGAAATCC
119544823 ACCACCTCCACG
1 ACCACCTCCACG
* *
119544835 ACCACCTCCTCT
1 ACCACCTCCACG
* *
119544847 ACCACCACCTCTG
1 ACCACCTCCAC-G
*
119544860 -CCTCCTCCACG
1 ACCACCTCCACG
119544871 ACCACCTC
1 ACCACCTC
119544879 TTCCACCACC
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
11 1 0.03
12 33 0.97
ACGTcount: A:0.20, C:0.59, G:0.05, T:0.16
Consensus pattern (12 bp):
ACCACCTCCACG
Found at i:119544863 original size:21 final size:21
Alignment explanation
Indices: 119544839--119544879 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
119544829 TCCACGACCA
*
119544839 CCTCCTCTACCACCACCTCTG
1 CCTCCTCCACCACCACCTCTG
*
119544860 CCTCCTCCACGACCACCTCT
1 CCTCCTCCACCACCACCTCT
119544880 TCCACCACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.59, G:0.05, T:0.22
Consensus pattern (21 bp):
CCTCCTCCACCACCACCTCTG
Found at i:119544882 original size:69 final size:69
Alignment explanation
Indices: 119544755--119544884 Score: 161
Period size: 69 Copynumber: 1.9 Consensus size: 69
119544745 ACCTCTAAAT
** *** *
119544755 CCACCGCCACGACCACCACCCCTAGGACCACCTCTGCCACCTCTTGGAGCACCACTTCCACGAAA
1 CCACCGCCACGACCACCACCCCTACCACCACCTCTGCCACCTCCACGACCACCACTTCCACGAAA
119544820 TCCA
66 TCCA
* * * * *
119544824 CCACCTCCACGACCACCTCCTCTACCACCACCTCTGCCTCCTCCACGACCACCTCTTCCAC
1 CCACCGCCACGACCACCACCCCTACCACCACCTCTGCCACCTCCACGACCACCACTTCCAC
119544885 CACCTTGTGC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 50 1.00
ACGTcount: A:0.22, C:0.54, G:0.09, T:0.15
Consensus pattern (69 bp):
CCACCGCCACGACCACCACCCCTACCACCACCTCTGCCACCTCCACGACCACCACTTCCACGAAA
TCCA
Found at i:119546750 original size:28 final size:28
Alignment explanation
Indices: 119546719--119546774 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
119546709 TTTTATATTA
* * * *
119546719 TATAATTTAATTTTAATTTATTTTAAAT
1 TATAATTAAAATTAAATTAATTTTAAAT
119546747 TATAATTAAAATTAAATTAATTTTAAAT
1 TATAATTAAAATTAAATTAATTTTAAAT
119546775 AGAAAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
TATAATTAAAATTAAATTAATTTTAAAT
Found at i:119554268 original size:23 final size:23
Alignment explanation
Indices: 119554209--119554268 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
119554199 ATGTATAGAC
119554209 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
119554229 T-AATAAATATTTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
119554252 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
119554269 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:119554277 original size:31 final size:31
Alignment explanation
Indices: 119554208--119554278 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
119554198 CATGTATAGA
*
119554208 CTAAATAAAATAATAAAATAATAATAAATAT
1 CTAATTAAAATAATAAAATAATAATAAATAT
* * * *
119554239 TTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAAATAT
119554270 CTAATTAAA
1 CTAATTAAA
119554279 TAACTATAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
30 6 0.19
31 26 0.81
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAAATAT
Found at i:119563427 original size:4 final size:4
Alignment explanation
Indices: 119563418--119563461 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
119563408 CAAAGTCAAA
119563418 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
119563462 CAATGGGGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:119566726 original size:124 final size:125
Alignment explanation
Indices: 119566541--119566787 Score: 381
Period size: 124 Copynumber: 2.0 Consensus size: 125
119566531 GTAGAATGTA
* * * *
119566541 TATTAATTATGTCATTTTAAGTTTTAGTTTAATGTATTGTAATAATGAGAATAACATAAGTTCAA
1 TATTAATTATGTCATTTTAAGTTTTAGTTTAATCTATTGTAATAATAAGAAGAACAAAAGTTCAA
* *
119566606 GTGTGCTTAATCATGCATTTTTCTTTGATTTAAGAGTTTGAGAGAATTATAAGTAAAATG
66 GCGTGCTTAATCATGCATTTTTCTTCGATTTAAGAGTTTGAGAGAATTATAAGTAAAATG
*
119566666 TATTAATTATGTCA-TTTGAGTTTTAGTTTAATCTATTGTAATAATCAAG-AGAACAAAAGTTCA
1 TATTAATTATGTCATTTTAAGTTTTAGTTTAATCTATTGTAATAAT-AAGAAGAACAAAAGTTCA
* * *
119566729 AGCGTGCTTAATCATGTATTTTTCTTCGATTTAAGAGTTTGAGAGGATTTTAAGTAAAA
65 AGCGTGCTTAATCATGCATTTTTCTTCGATTTAAGAGTTTGAGAGAATTATAAGTAAAA
119566788 ATAGACATTC
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
124 95 0.86
125 16 0.14
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (125 bp):
TATTAATTATGTCATTTTAAGTTTTAGTTTAATCTATTGTAATAATAAGAAGAACAAAAGTTCAA
GCGTGCTTAATCATGCATTTTTCTTCGATTTAAGAGTTTGAGAGAATTATAAGTAAAATG
Found at i:119569935 original size:23 final size:24
Alignment explanation
Indices: 119569909--119569955 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
119569899 AAATATCTAA
119569909 TATGATGTATA-AAAAATTAAAAT
1 TATGATGTATATAAAAATTAAAAT
* * *
119569932 TATGGTTTATATAAAATTTAAAAT
1 TATGATGTATATAAAAATTAAAAT
119569956 GGAAACGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (24 bp):
TATGATGTATATAAAAATTAAAAT
Found at i:119576021 original size:18 final size:20
Alignment explanation
Indices: 119575986--119576028 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
119575976 AAAAGTTATT
* *
119575986 ATTTTTTTTAAATTATAA-A
1 ATTTTTATTAAATAATAACA
119576005 ATTTTTATTAAA-AATAACA
1 ATTTTTATTAAATAATAACA
119576024 ATTTT
1 ATTTT
119576029 GTTATTAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTTTATTAAATAATAACA
Found at i:119577216 original size:11 final size:11
Alignment explanation
Indices: 119577202--119577227 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
119577192 TGAAATTTTC
119577202 TCAAAATTCTA
1 TCAAAATTCTA
119577213 TCAAAATTCTA
1 TCAAAATTCTA
119577224 TCAA
1 TCAA
119577228 TTTATTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:119577481 original size:48 final size:48
Alignment explanation
Indices: 119577363--119577497 Score: 150
Period size: 48 Copynumber: 2.8 Consensus size: 48
119577353 AGTGATAATT
* * *
119577363 TTAAATTTTCAATACTA-TTCGATATTTTCTTAATTTATGCAAATTTAA
1 TTAAATTTGCAATACTACTT-GATATTTTTTTCATTTATGCAAATTTAA
* *
119577411 TTAAATTTGCAATACTATTTGATATTTTTTTCATTTATGC-AGTTATAA
1 TTAAATTTGCAATACTACTTGATATTTTTTTCATTTATGCAAATT-TAA
* * *
119577459 TTAAAATTT-CAATATTGCTTGATTTTTTTTTCATTTATG
1 TT-AAATTTGCAATACTACTTGATATTTTTTTCATTTATG
119577498 ATGTTTGCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
47 3 0.04
48 65 0.86
49 8 0.11
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.53
Consensus pattern (48 bp):
TTAAATTTGCAATACTACTTGATATTTTTTTCATTTATGCAAATTTAA
Found at i:119579118 original size:18 final size:18
Alignment explanation
Indices: 119579095--119579137 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
119579085 CGCGAGGTGC
*
119579095 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
119579113 GTATCCTAACCTTTATAT
1 GTATCCTAACCCTTATAT
*
119579131 GTTTCCT
1 GTATCCT
119579138 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:119582123 original size:75 final size:75
Alignment explanation
Indices: 119582044--119582223 Score: 270
Period size: 75 Copynumber: 2.4 Consensus size: 75
119582034 GGTACATATC
* *
119582044 CCATCCACTAACGGAGTGTCGTGCAGGGGTTGGGTATTCCATACTCCTACTAAACACGGGCACTT
1 CCATCCACTAACGGAGTGTCGTGCAGGGGTTGGGTATTCCATAATCCTACTAAACACGGGAACTT
119582109 CCGTGTTTTG
66 CCGTGTTTTG
* * * * *
119582119 CCATCCACTGACGGAGTGTCATGTAGGGGTTGGGTATTCCATAATGCTACTAAACATGGGAACTT
1 CCATCCACTAACGGAGTGTCGTGCAGGGGTTGGGTATTCCATAATCCTACTAAACACGGGAACTT
**
119582184 TGGTGTTTTG
66 CCGTGTTTTG
*
119582194 CCATCCACTAACGGAGTGTCGGGCAGGGGT
1 CCATCCACTAACGGAGTGTCGTGCAGGGGT
119582224 CGTGTACTCC
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 92 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (75 bp):
CCATCCACTAACGGAGTGTCGTGCAGGGGTTGGGTATTCCATAATCCTACTAAACACGGGAACTT
CCGTGTTTTG
Found at i:119582923 original size:126 final size:126
Alignment explanation
Indices: 119582686--119583064 Score: 548
Period size: 126 Copynumber: 3.0 Consensus size: 126
119582676 GCTCATTTGT
119582686 AGGCTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGT-GAGAGCTTTTTTCAGAACT
1 AGGCTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGA-AGCTTTTTTCAGAAC-
* *
119582750 TTTTGCTGACAGTGCATCTTGCTTGAAGCATTTTCGATACTATTTGTTCAGAAACGTCTACTC
64 TTTTGCTGACAGTGCATCTTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC
* * *
119582813 AGGCTCATTTTCCTGCAAATTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGAACTT
1 AGGCTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGAACTT
* * *
119582878 TTGTTGACAGTGCATCCTACTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC
66 TTGCTGACAGTGCATCTTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC
** * * * * *
119582939 AGATTTATTTTTCTACGAACTACTGTAGCAAAAGAGTGTCCACGTGGGAG-TTTTTTCCAGAAAT
1 AGGCTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTT-CAGAACT
* * *
119583003 TTT-CTGACACTGCATCTTGCTTGAAGTGTTTTCGACACTATTTGTTCAGAAATGTCTACTC
65 TTTGCTGACAGTGCATCTTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC
119583064 A
1 A
119583065 AAATTATTCT
Statistics
Matches: 226, Mismatches: 24, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
125 59 0.26
126 108 0.48
127 57 0.25
128 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (126 bp):
AGGCTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGAACTT
TTGCTGACAGTGCATCTTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTC
Found at i:119583199 original size:59 final size:59
Alignment explanation
Indices: 119583136--119583267 Score: 135
Period size: 59 Copynumber: 2.2 Consensus size: 59
119583126 GTTTTTTTTT
119583136 CTAATACCCTAAACACAAATTTA-T-TTAAAAATACTAA-ACCCTAATTTAATCAATTAACC
1 CTAATACCCTAAACACAAATTTAGTATTAAAAAT--TAATA-CCTAATTTAATCAATTAACC
* ** * * ** *
119583195 CTAATATCCTAAATTCTAATTTAGTATTTAAAATTAATATTTAATTTAATGAATTAACC
1 CTAATACCCTAAACACAAATTTAGTATTAAAAATTAATACCTAATTTAATCAATTAACC
*
119583254 CTAAAACCCTAAAC
1 CTAATACCCTAAAC
119583268 TTTAATTCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
59 50 0.85
60 2 0.03
61 7 0.12
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (59 bp):
CTAATACCCTAAACACAAATTTAGTATTAAAAATTAATACCTAATTTAATCAATTAACC
Found at i:119583627 original size:19 final size:19
Alignment explanation
Indices: 119583605--119583657 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
119583595 ACGATTATGT
119583605 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAATTTA
119583624 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAATTTA
119583643 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
119583658 ACCCTTAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:119583768 original size:24 final size:26
Alignment explanation
Indices: 119583735--119583797 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 26
119583725 ATTTTTTTAT
*
119583735 AAACCCTAAAAACCT-TTAAACCTT-A
1 AAACCATAAAAACCTCTT-AACCTTAA
*
119583760 AAA-CATAAAAA-ATCTTAACCTTAA
1 AAACCATAAAAACCTCTTAACCTTAA
119583784 AAACCATAAAAACC
1 AAACCATAAAAACC
119583798 CTAACGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 7 0.23
24 13 0.42
25 11 0.35
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.21
Consensus pattern (26 bp):
AAACCATAAAAACCTCTTAACCTTAA
Found at i:119583770 original size:25 final size:25
Alignment explanation
Indices: 119583742--119583795 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
119583732 TATAAACCCT
119583742 AAAAACCTTTAAACCTT-AAAA-CATA
1 AAAAACC-TT-AACCTTAAAAACCATA
*
119583767 AAAAATCTTAACCTTAAAAACCATA
1 AAAAACCTTAACCTTAAAAACCATA
119583792 AAAA
1 AAAA
119583796 CCCTAACGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 6 0.23
25 14 0.54
ACGTcount: A:0.59, C:0.19, G:0.00, T:0.22
Consensus pattern (25 bp):
AAAAACCTTAACCTTAAAAACCATA
Found at i:119583802 original size:24 final size:24
Alignment explanation
Indices: 119583735--119583810 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
119583725 ATTTTTTTAT
*
119583735 AAACCCTAAAAACCTTTAAACCTT-A
1 AAACCATAAAAACC-TT-AACCTTAA
*
119583760 AAA-CATAAAAAATCTTAACCTTAA
1 AAACCAT-AAAAACCTTAACCTTAA
* *
119583784 AAACCATAAAAACCCTAA-CGTAA
1 AAACCATAAAAACCTTAACCTTAA
119583807 AAAC
1 AAAC
119583811 GGGCAAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
23 14 0.33
24 17 0.40
25 12 0.28
ACGTcount: A:0.55, C:0.24, G:0.01, T:0.20
Consensus pattern (24 bp):
AAACCATAAAAACCTTAACCTTAA
Found at i:119586218 original size:3 final size:3
Alignment explanation
Indices: 119586210--119586234 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
119586200 ATCACCACTT
119586210 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
119586235 CCTCCTCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:119590187 original size:3 final size:3
Alignment explanation
Indices: 119590145--119590173 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
119590135 TATTTTATTT
119590145 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
119590174 TTCTTTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:119590594 original size:23 final size:23
Alignment explanation
Indices: 119590550--119590596 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
119590540 TTATAATCTC
*
119590550 AAAAGTTAAATTTCATTATTTTT
1 AAAAGTTAAATTTAATTATTTTT
*
119590573 AAAAGATTAAA-TTAATTTTTTTT
1 AAAAG-TTAAATTTAATTATTTTT
119590596 A
1 A
119590597 TTTTTAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
AAAAGTTAAATTTAATTATTTTT
Found at i:119591787 original size:26 final size:27
Alignment explanation
Indices: 119591748--119591805 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
119591738 TATCAATATC
119591748 AGGGGCAAAACTAGGAAAAAAAATTT-
1 AGGGGCAAAACTAGGAAAAAAAATTTA
*
119591774 AGGGGCAAAGCTAGGAAAAAAAATTTA
1 AGGGGCAAAACTAGGAAAAAAAATTTA
119591801 AGGGG
1 AGGGG
119591806 AGTCGAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.50, C:0.07, G:0.29, T:0.14
Consensus pattern (27 bp):
AGGGGCAAAACTAGGAAAAAAAATTTA
Found at i:119607165 original size:33 final size:33
Alignment explanation
Indices: 119607128--119607280 Score: 233
Period size: 33 Copynumber: 4.8 Consensus size: 33
119607118 CTCTGTTTCA
119607128 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
119607161 GGTTGCTGGAC----GCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
119607190 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
**
119607223 GGTTGCTGGACAGGAGCTGGAATGCAAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
* *
119607256 GGTTGCTAGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
119607281 CAAGAAGAAA
Statistics
Matches: 110, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
29 29 0.26
33 81 0.74
ACGTcount: A:0.18, C:0.10, G:0.41, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:119607225 original size:62 final size:63
Alignment explanation
Indices: 119607128--119607280 Score: 227
Period size: 62 Copynumber: 2.4 Consensus size: 63
119607118 CTCTGTTTCA
**
119607128 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGAC-GCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGCTGGAATGCAAGTGTTT
*
119607190 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGGAGCTGGAATGCAAGTGTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGAC---AGCTGGAATGCAAGTGTT
119607255 T
63 T
* *
119607256 GGTTGCTAGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
119607281 CAAGAAGAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
62 43 0.53
66 38 0.47
ACGTcount: A:0.18, C:0.10, G:0.41, T:0.30
Consensus pattern (63 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGCTGGAATGCAAGTGTTT
Found at i:119612192 original size:41 final size:41
Alignment explanation
Indices: 119612135--119612217 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
119612125 TGTTAACAGT
119612135 AGCAGCATATCCCAATCTAAATCCCATTACCAAAACTCGAA
1 AGCAGCATATCCCAATCTAAATCCCATTACCAAAACTCGAA
119612176 AGCAGCATATCCCAATCTAAATCCCATTACCAAAACTCGAA
1 AGCAGCATATCCCAATCTAAATCCCATTACCAAAACTCGAA
119612217 A
1 A
119612218 CCCCTAATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.31, G:0.07, T:0.19
Consensus pattern (41 bp):
AGCAGCATATCCCAATCTAAATCCCATTACCAAAACTCGAA
Found at i:119616174 original size:17 final size:19
Alignment explanation
Indices: 119616152--119616187 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
119616142 AGACTTAAAA
119616152 AGAAGTCTA-AA-AGGAGT
1 AGAAGTCTACAAGAGGAGT
119616169 AGAAGTCTACAAGAGGAGT
1 AGAAGTCTACAAGAGGAGT
119616188 GGGACTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.44, C:0.08, G:0.31, T:0.17
Consensus pattern (19 bp):
AGAAGTCTACAAGAGGAGT
Found at i:119617924 original size:10 final size:11
Alignment explanation
Indices: 119617897--119617922 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
119617887 AAAAAATATT
119617897 AAAAATTAGAA
1 AAAAATTAGAA
119617908 AAAAATTAGAA
1 AAAAATTAGAA
119617919 AAAA
1 AAAA
119617923 TTGTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAATTAGAA
Found at i:119618030 original size:21 final size:21
Alignment explanation
Indices: 119618002--119618061 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 21
119617992 TTTTATAAAG
119618002 TCGT-AAGAAAATTATAAAAAA
1 TCGTAAAGAAAA-TATAAAAAA
*
119618023 T-GTAAAG-AAATAT-AAAAT
1 TCGTAAAGAAAATATAAAAAA
*
119618041 TCGTAAAAAAAACTATAAAAA
1 TCGTAAAGAAAA-TATAAAAA
119618062 TTATCGTACC
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 5 0.16
19 8 0.25
20 8 0.25
21 7 0.22
22 4 0.12
ACGTcount: A:0.63, C:0.05, G:0.08, T:0.23
Consensus pattern (21 bp):
TCGTAAAGAAAATATAAAAAA
Found at i:119619305 original size:32 final size:33
Alignment explanation
Indices: 119619247--119619312 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
119619237 AAAATTTGCA
*
119619247 ACATAAGCCCCTCTACTTTTTTTATATAAATTT
1 ACATAAACCCCTCTACTTTTTTTATATAAATTT
119619280 ACATAAACCCCTCTAC-TTTTTTATATAAATTT
1 ACATAAACCCCTCTACTTTTTTTATATAAATTT
119619312 A
1 A
119619313 AGTGGTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.44
Consensus pattern (33 bp):
ACATAAACCCCTCTACTTTTTTTATATAAATTT
Found at i:119619645 original size:12 final size:12
Alignment explanation
Indices: 119619628--119619652 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119619618 TCTAACATTT
119619628 ACACTCGAATTC
1 ACACTCGAATTC
119619640 ACACTCGAATTC
1 ACACTCGAATTC
119619652 A
1 A
119619653 AGTAACATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.08, T:0.24
Consensus pattern (12 bp):
ACACTCGAATTC
Found at i:119620676 original size:24 final size:24
Alignment explanation
Indices: 119620649--119620697 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
119620639 AAATGTTCGT
* *
119620649 GGATTGATCAATCCTAGAATGAAG
1 GGATTGAGCAATCCTAGAACGAAG
119620673 GGATTGAGCAATCCTAGAACGAAG
1 GGATTGAGCAATCCTAGAACGAAG
119620697 G
1 G
119620698 AAGGAAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (24 bp):
GGATTGAGCAATCCTAGAACGAAG
Found at i:119623455 original size:84 final size:86
Alignment explanation
Indices: 119623326--119623498 Score: 251
Period size: 84 Copynumber: 2.0 Consensus size: 86
119623316 CCAACTGATT
* * *
119623326 AGGGGTCACTCTATTAGATAATCCAGAGGAAATAACACCAGAATCAGCTCTTGGACCTGATAATG
1 AGGGGTCACTCTATTA-ATAATCCAGAAGAAATAACACCAGAATCACCACTTGGACCTGATAATG
*
119623391 AAGGTAACACTTCTGCAGTTCC
65 AAGGCAACACTTCTGCAGTTCC
* * **
119623413 AGGGGTCACTCTA-T-ATAATCCTGAAGAACTAACAGTAGAATCACCACTTGGACCTGATAATGA
1 AGGGGTCACTCTATTAATAATCCAGAAGAAATAACACCAGAATCACCACTTGGACCTGATAATGA
119623476 AGGCAACACTTCTGCAGTTCC
66 AGGCAACACTTCTGCAGTTCC
119623497 AG
1 AG
119623499 TACTTGACCC
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
84 64 0.82
86 1 0.01
87 13 0.17
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (86 bp):
AGGGGTCACTCTATTAATAATCCAGAAGAAATAACACCAGAATCACCACTTGGACCTGATAATGA
AGGCAACACTTCTGCAGTTCC
Found at i:119631523 original size:31 final size:31
Alignment explanation
Indices: 119631487--119631545 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
119631477 AAATGGTCAT
* *
119631487 TAAACTATTTGAAAGTTTTTATTTAAATCAC
1 TAAACTATTCGAAAGTTTTCATTTAAATCAC
*
119631518 TAAACTATTCGGAAGTTTTCATTTAAAT
1 TAAACTATTCGAAAGTTTTCATTTAAAT
119631546 TATAAGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.44
Consensus pattern (31 bp):
TAAACTATTCGAAAGTTTTCATTTAAATCAC
Found at i:119636201 original size:18 final size:16
Alignment explanation
Indices: 119636159--119636201 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 16
119636149 ATTAAATAAA
119636159 TATATTTTTTAATTTT
1 TATATTTTTTAATTTT
119636175 TATACTTTTTTGAATGTTT
1 TATA-TTTTTT-AAT-TTT
119636194 TATATTTT
1 TATATTTT
119636202 AAAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.17
17 6 0.25
18 7 0.29
19 7 0.29
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (16 bp):
TATATTTTTTAATTTT
Done.