Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 361 of 373
Found at i:119638356 original size:21 final size:22
Alignment explanation
Indices: 119638330--119638376 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
119638320 CTCTGCTCAA
*
119638330 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
119638351 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
119638373 ACTC
1 ACTC
119638377 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:119649731 original size:63 final size:63
Alignment explanation
Indices: 119649653--119649778 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
119649643 GCAAAGTCAA
119649653 TAATTAGATATTTAATTCAAATCAAAATCTCACTTTAAAAGTGAATCCAGTTATACTTGAAGT
1 TAATTAGATATTTAATTCAAATCAAAATCTCACTTTAAAAGTGAATCCAGTTATACTTGAAGT
* *
119649716 TAATTAGATATTTAATTCAAATCAAAATCTCACTTTAAAAGTGGATTCAGTTATACTTGAAGT
1 TAATTAGATATTTAATTCAAATCAAAATCTCACTTTAAAAGTGAATCCAGTTATACTTGAAGT
119649779 GAACTTCAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.37
Consensus pattern (63 bp):
TAATTAGATATTTAATTCAAATCAAAATCTCACTTTAAAAGTGAATCCAGTTATACTTGAAGT
Found at i:119651789 original size:51 final size:51
Alignment explanation
Indices: 119651713--119651814 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
119651703 TATTCAACAC
*
119651713 TAGTTCGAGTCTGGATAATGATTCAAGATAGAGGAAGAAACCTGCAAAGGG
1 TAGTTCGAGTCTGGATAATGATTCAAGATAGAAGAAGAAACCTGCAAAGGG
119651764 TAGTTCGAGTCTGGATAATGATTCAAGATAGAAGAAGAAACCTGCAAAGGG
1 TAGTTCGAGTCTGGATAATGATTCAAGATAGAAGAAGAAACCTGCAAAGGG
119651815 GAACTACTTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (51 bp):
TAGTTCGAGTCTGGATAATGATTCAAGATAGAAGAAGAAACCTGCAAAGGG
Found at i:119654052 original size:150 final size:149
Alignment explanation
Indices: 119653645--119654457 Score: 527
Period size: 150 Copynumber: 5.3 Consensus size: 149
119653635 TACTAATGGA
* * * * * * *
119653645 AATGGAAAAGCAGG-TCTACCAACAAATCTTAGGCATGATGCTAACAGATTCATTTTGAAAATGC
1 AATGGAAAAGCAGGCACAACAAAGAAATCTCAAGCATGATGCTAACAGATTCACTTT-AAAA---
* * * **
119653709 CCTGTTATGTTATATGCTAT-TGGGTTCATATGGCTACTTTTAAGTTCAATGTTTCATCGCTTCT
62 --TGTT-TGTTATATGCTATAT-GGTTCATATGGCTGCTTTCAAGTTCAACGTTTCATTACTTCT
* * ** *
119653773 ATTTCAGTTATACAATGTTTGACGACT
123 ATTTCAGTTCTACAATGCTCAATGACT
* * * * * * ** * *
119653800 AATGAAAACAGAAAGACAAGCACTACCAAA-TAATCTTAGGCATGATGCTAATGGACTCACTCTG
1 AATG----GA-AAAG-CAGGCAC-AACAAAGAAATCTCAAGCATGATGCTAACAGATTCACT-TT
* * *
119653864 AAAATGTTATGTTATATGCTATTTGGTTCATATGGCTGCCTTCTGAGTTCAACGTTTCATTACTT
58 AAAATGTT-TGTTATATGCTATATGGTTCATATGGCTGCTTTC-AAGTTCAACGTTTCATTACTT
* *
119653929 CTGTTTCAGTTCTAGAATG-TCAATGACT
121 CTATTTCAGTTCTACAATGCTCAATGACT
119653957 AATGGAAAAGCAGGC-CAAACAAAGAAATCTCAAGCATGATGCTAACAGATTCACTTTAAAATGT
1 AATGGAAAAGCAGGCAC-AACAAAGAAATCTCAAGCATGATGCTAACAGATTCACTTTAAAATGT
* * * * *
119654021 ATTGTTATATGCTATACGGTTCATGTAGCTGCTTTCAAGTTC-ACTCTTTCATTTCTTCTATTTC
65 -TTGTTATATGCTATATGGTTCATATGGCTGCTTTCAAGTTCAAC-GTTTCATTACTTCTATTTC
*
119654085 AGTTCTACAATGCTCAATGGCT
128 AGTTCTACAATGCTCAATGACT
* * * * * *
119654107 AATGGAAAGGCAGGCACTACCAATAAATCTCAGGCTTGATGCTAACAGATTCACTTTGAAAATGT
1 AATGGAAAAGCAGGCACAACAAAGAAATCTCAAGCATGATGCTAACAGATTCACTTT-AAAATGT
* * * *
119654172 CTTGTTATAATGCTA-ATGGCTTCATATGGATGCTTTCAAGTTCAATGCTTCATTGCTTCTATTT
65 -TTGTTAT-ATGCTATATGG-TTCATATGGCTGCTTTCAAGTTCAACGTTTCATTACTTCTATTT
* * *
119654236 CAGCTCTACAATGTTCGATGACT
127 CAGTTCTACAATGCTCAATGACT
* * * * * * * *
119654259 AATGGAAACCAAAAAGGCAGGCACTACAAA-ATAATCTTAGGCACGATGTTAA-GGATTTAATCT
1 AATGG------AAAA-GCAGGCACAACAAAGA-AATCTCAAGCATGATGCTAACAGATTCACT-T
* * * * * * * *
119654322 GAACATG-TCGTTTATAAGCTA-ATTGGTTCACATGGCTGGTTTCAAGTTCAATGTTTCTTTACT
57 TAAAATGTTTG-TTATATGCTATA-TGGTTCATATGGCTGCTTTCAAGTTCAACGTTTCATTACT
* * *
119654385 TCTATTCCAGCTCTACAATGTTCAATGACT
120 TCTATTTCAGTTCTACAATGCTCAATGACT
* * * *
119654415 AATGGAAAGGCAGACA-ATACCAAGAAAGCT-AAGGCATGATGCT
1 AATGGAAAAGCAGGCACA-ACAAAGAAATCTCAA-GCATGATGCT
119654458 CAAGCGAAAA
Statistics
Matches: 529, Mismatches: 95, Indels: 74
0.76 0.14 0.11
Matches are distributed among these distances:
148 3 0.01
149 54 0.10
150 104 0.20
151 48 0.09
152 69 0.13
153 2 0.00
155 4 0.01
156 72 0.14
157 51 0.10
158 49 0.09
159 31 0.06
160 4 0.01
161 3 0.01
162 31 0.06
163 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33
Consensus pattern (149 bp):
AATGGAAAAGCAGGCACAACAAAGAAATCTCAAGCATGATGCTAACAGATTCACTTTAAAATGTT
TGTTATATGCTATATGGTTCATATGGCTGCTTTCAAGTTCAACGTTTCATTACTTCTATTTCAGT
TCTACAATGCTCAATGACT
Found at i:119662491 original size:18 final size:18
Alignment explanation
Indices: 119662468--119662504 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
119662458 TTTGTTTTTC
119662468 TAATTTAAATCTTAGGAT
1 TAATTTAAATCTTAGGAT
*
119662486 TAATTTAGATCTTAGGAT
1 TAATTTAAATCTTAGGAT
119662504 T
1 T
119662505 TAAATAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (18 bp):
TAATTTAAATCTTAGGAT
Found at i:119667455 original size:27 final size:28
Alignment explanation
Indices: 119667425--119667477 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
119667415 TATTTTTTGA
* * *
119667425 AATTATG-AAAATATTTTTAAAAATTGT
1 AATTATGTAAAAAAATTATAAAAATTGT
119667452 AATTATGTAAAAAAATTATAAAAATT
1 AATTATGTAAAAAAATTATAAAAATT
119667478 TTATAACAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.40
Consensus pattern (28 bp):
AATTATGTAAAAAAATTATAAAAATTGT
Found at i:119673076 original size:22 final size:23
Alignment explanation
Indices: 119673051--119673095 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
119673041 TCATATGGTT
*
119673051 GAATATATATTT-AGTTTTTTTA
1 GAATATATATTTGAGTTATTTTA
*
119673073 GAATTTATATTTGAGTTATTTTA
1 GAATATATATTTGAGTTATTTTA
119673096 AGATAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (23 bp):
GAATATATATTTGAGTTATTTTA
Found at i:119677460 original size:14 final size:15
Alignment explanation
Indices: 119677432--119677468 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
119677422 AGATATTATT
119677432 TTATGTTA-T-TTTA
1 TTATGTTATTATTTA
119677445 TTAT-TTATTATTTA
1 TTATGTTATTATTTA
119677459 TTATGTTATT
1 TTATGTTATT
119677469 TTATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 3 0.14
13 5 0.24
14 8 0.38
15 5 0.24
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.70
Consensus pattern (15 bp):
TTATGTTATTATTTA
Found at i:119678326 original size:22 final size:23
Alignment explanation
Indices: 119678301--119678346 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
119678291 CAACCAAATC
119678301 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
119678323 AATTCATTCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
119678346 A
1 A
119678347 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:119678352 original size:23 final size:23
Alignment explanation
Indices: 119678308--119678352 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
119678298 ATCAATTCAA
*
119678308 CATATTTTCAAGATAAATTCATT
1 CATATTTTCAAGATAAAGTCATT
*
119678331 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
119678353 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATT
Found at i:119684576 original size:21 final size:21
Alignment explanation
Indices: 119684550--119684590 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
119684540 AGCTTAAATG
119684550 ATGGTTGAATAAGTA-GAATTC
1 ATGGTTGAA-AAGTATGAATTC
119684571 ATGGTTGAAAAGTATGAATT
1 ATGGTTGAAAAGTATGAATT
119684591 GAAATTGCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.34
Consensus pattern (21 bp):
ATGGTTGAAAAGTATGAATTC
Found at i:119685928 original size:39 final size:39
Alignment explanation
Indices: 119685874--119685950 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
119685864 TGGTATTTGA
* * *
119685874 AATATATCCGGACATGAGGTCTGTAGGCTATATGCTGGG
1 AATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGG
*
119685913 AATATATCCGGACATGAAGTCCGCAGGCTATGTGCTGG
1 AATATATCCGGACATGAAGTCCGCAGGCTATATGCTGG
119685951 AATGGTACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (39 bp):
AATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGG
Found at i:119688181 original size:46 final size:46
Alignment explanation
Indices: 119688131--119688299 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
119688121 TGAGCATCCA
119688131 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
119688177 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
119688224 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
119688270 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
119688300 GGGGCGGTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.55
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:119688283 original size:93 final size:93
Alignment explanation
Indices: 119688124--119688294 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
119688114 GGATGGTTGA
* *
119688124 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
119688189 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
119688217 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
119688282 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
119688295 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:119689812 original size:18 final size:18
Alignment explanation
Indices: 119689789--119690071 Score: 115
Period size: 18 Copynumber: 15.3 Consensus size: 18
119689779 GAACAATTAT
119689789 TTATTCAGTAATAGTCAG
1 TTATTCAGTAATAGTCAG
* * * *
119689807 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAGTCAG
* **
119689825 TTATTCAATAATAACCAG
1 TTATTCAGTAATAGTCAG
* *
119689843 TTATTCAATATCGATCAATTGATCGG
1 TTATTC---A--G-T-AATAG-TCAG
* * *
119689869 TTATCCAGTAACAGTCAA
1 TTATTCAGTAATAGTCAG
*
119689887 TTATTCAGTAA-AATCAG
1 TTATTCAGTAATAGTCAG
* * *
119689904 ATATTCAGTAACTATTAAG
1 TTATTCAGTAA-TAGTCAG
* * **
119689923 GTATTTAGTAGCAGTCA-
1 TTATTCAGTAATAGTCAG
* * * *
119689940 TTCATTTAGTGACAATCAG
1 TT-ATTCAGTAATAGTCAG
*
119689959 TTATTCAGTAAT-GATCAA
1 TTATTCAGTAATAG-TCAG
*
119689977 TTATTCAGTAATATTCAG
1 TTATTCAGTAATAGTCAG
119689995 TTATTCAGTAATAGTCTA-
1 TTATTCAGTAATAGTC-AG
* * * *
119690013 ATATCCAGTAACAGTCAA
1 TTATTCAGTAATAGTCAG
* * * *
119690031 TTATCCGGTAACAGTCAA
1 TTATTCAGTAATAGTCAG
*
119690049 TTATTCAGTAATAATCAG
1 TTATTCAGTAATAGTCAG
119690067 TTATT
1 TTATT
119690072 TTATACCTTT
Statistics
Matches: 196, Mismatches: 53, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
17 16 0.08
18 147 0.75
19 18 0.09
20 1 0.01
21 2 0.01
23 1 0.01
24 1 0.01
25 3 0.02
26 7 0.04
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAATAGTCAG
Found at i:119690290 original size:45 final size:45
Alignment explanation
Indices: 119690235--119690427 Score: 280
Period size: 45 Copynumber: 4.3 Consensus size: 45
119690225 ACAAATCCGG
* *
119690235 AACAGTAACAGTAACAGTATTC-ATCACACAAAGTGCTGAATCGGT
1 AACAGTAACAGTAACAATATTCGA-CACACAAAGTGCCGAATCGGT
* * *
119690280 AACGGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
* *
119690325 AACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGAT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
* *
119690370 AACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATTGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
*
119690415 AACAGTAGCAGTA
1 AACAGTAACAGTA
119690428 GCGGTAACAG
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 135 0.99
46 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (45 bp):
AACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCGGT
Found at i:119690847 original size:5 final size:5
Alignment explanation
Indices: 119690836--119690882 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
119690826 AATTAATCAT
* *
119690836 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
119690883 CTTATCCACT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
5 34 0.87
6 5 0.13
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:119697929 original size:13 final size:13
Alignment explanation
Indices: 119697911--119697961 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
119697901 ATAGGAGATT
119697911 TTATTTTATTTTA
1 TTATTTTATTTTA
119697924 TTA-TTTA-TTT-
1 TTATTTTATTTTA
119697934 TTATTTTTATTTTA
1 TTA-TTTTATTTTA
*
119697948 TTAATTTATCTTTA
1 TTATTTTAT-TTTA
119697962 GCATATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
10 3 0.09
11 3 0.09
12 8 0.25
13 11 0.34
14 7 0.22
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:119697938 original size:6 final size:6
Alignment explanation
Indices: 119697909--119697946 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
119697899 AAATAGGAGA
119697909 TTTTA- TTTTA- TTTTAT TATTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT T-TTTAT TTTTAT TTTTAT TTT
119697947 ATTAATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 10 0.32
6 15 0.48
7 6 0.19
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:119697946 original size:24 final size:24
Alignment explanation
Indices: 119697909--119697961 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
119697899 AAATAGGAGA
119697909 TTTTATTTTATTTTATT-ATTTAT
1 TTTTATTTTATTTTATTAATTTAT
119697932 TTTTATTTTTATTTTATTAATTTAT
1 TTTTA-TTTTATTTTATTAATTTAT
*
119697957 CTTTA
1 TTTTA
119697962 GCATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 12 0.44
25 10 0.37
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTATTTTATTTTATTAATTTAT
Found at i:119700288 original size:43 final size:44
Alignment explanation
Indices: 119700184--119700334 Score: 154
Period size: 44 Copynumber: 3.5 Consensus size: 44
119700174 TAAAAAAAAA
*
119700184 TTAGATCTT-AGGACTT-AAATAGGTTAAAGTTTTATTTTTCTCAT
1 TTAGATCTTAAGGA-TTCAAATAGGTTAAA-TTTTATTTTTCTAAT
* * *
119700228 TTATAT-TTTAGGATTCAAATAGGTTAAATTTTACTTTTCTAAT
1 TTAGATCTTAAGGATTCAAATAGGTTAAATTTTATTTTTCTAAT
*
119700271 TTAGATCTTAAGG-TTCAAATAGGGTAGAAATTTGT-TTTTTCTAAT
1 TTAGATCTTAAGGATTCAAATA-GGT-TAAATTT-TATTTTTCTAAT
*
119700316 TTAAATCTT-AGGATT-AAAT
1 TTAGATCTTAAGGATTCAAAT
119700335 TTTATTTTTT
Statistics
Matches: 92, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
43 30 0.33
44 36 0.39
45 25 0.27
46 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.47
Consensus pattern (44 bp):
TTAGATCTTAAGGATTCAAATAGGTTAAATTTTATTTTTCTAAT
Found at i:119706102 original size:16 final size:16
Alignment explanation
Indices: 119706083--119706130 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
119706073 TTTACATGAT
119706083 TATAATTTTAAAAAAA
1 TATAATTTTAAAAAAA
* *
119706099 TATAATTTCAAATAAA
1 TATAATTTTAAAAAAA
119706115 TGATGAATTTTCAAAA
1 T-AT-AATTTT-AAAA
119706131 TAATTTAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 15 0.60
17 2 0.08
18 5 0.20
19 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (16 bp):
TATAATTTTAAAAAAA
Found at i:119709153 original size:18 final size:18
Alignment explanation
Indices: 119709130--119709164 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
119709120 ATTTATACTT
119709130 ATAATTTATTATAATTTA
1 ATAATTTATTATAATTTA
* *
119709148 ATAATTTTTTATGATTT
1 ATAATTTATTATAATTT
119709165 TTTTATATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
ATAATTTATTATAATTTA
Found at i:119711892 original size:18 final size:18
Alignment explanation
Indices: 119711845--119711893 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
119711835 TCAATGCAGT
119711845 GATTCTCTAAATTTGATTG
1 GATTCTC-AAATTTGATTG
*
119711864 GATTTTC-AATTTGAATTG
1 GATTCTCAAATTTG-ATTG
119711882 G-TTCTCAAATTT
1 GATTCTCAAATTT
119711894 ACATGTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 10 0.38
18 10 0.38
19 6 0.23
ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49
Consensus pattern (18 bp):
GATTCTCAAATTTGATTG
Found at i:119715115 original size:27 final size:25
Alignment explanation
Indices: 119715061--119715115 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
119715051 CAGATGGCCC
* **
119715061 AAAGTAAAAAAATCTAAATATTTTT
1 AAAGTAAAAAAATCTAAATAATCCT
119715086 AAAGTAAAAAAATCTAGATATAATCCT
1 AAAGTAAAAAAATCTA-A-ATAATCCT
119715113 AAA
1 AAA
119715116 AAAAGGCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.64
26 1 0.04
27 8 0.32
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.29
Consensus pattern (25 bp):
AAAGTAAAAAAATCTAAATAATCCT
Found at i:119718757 original size:15 final size:15
Alignment explanation
Indices: 119718737--119718765 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
119718727 TCTCTATCAT
119718737 TATTGTATTTCTATG
1 TATTGTATTTCTATG
119718752 TATTGTATTTCTAT
1 TATTGTATTTCTAT
119718766 ATCATTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.10, T:0.62
Consensus pattern (15 bp):
TATTGTATTTCTATG
Found at i:119721887 original size:19 final size:19
Alignment explanation
Indices: 119721850--119721893 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
119721840 TGAAACTAGT
*
119721850 ATCAATATTCTCAATAATA
1 ATCAATATTCTCAAGAATA
119721869 ATCAATATT-TCCAAGAATA
1 ATCAATATTCT-CAAGAATA
119721888 AGTCAA
1 A-TCAA
119721894 AAGGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 17 0.77
20 4 0.18
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.32
Consensus pattern (19 bp):
ATCAATATTCTCAAGAATA
Found at i:119735779 original size:19 final size:19
Alignment explanation
Indices: 119735742--119735785 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
119735732 TGAAACTAGT
*
119735742 ATCAATATTCTCAATAATA
1 ATCAATATTCTCAAGAATA
119735761 ATCAATATT-TCCAAGAATA
1 ATCAATATTCT-CAAGAATA
119735780 AGTCAA
1 A-TCAA
119735786 AAGGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 17 0.77
20 4 0.18
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.32
Consensus pattern (19 bp):
ATCAATATTCTCAAGAATA
Found at i:119740739 original size:32 final size:33
Alignment explanation
Indices: 119740696--119740757 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
119740686 CAAAACAAAT
*
119740696 TTATTTGTAAAAATTATAATAATAAATTTAAAA
1 TTATTTGTAAAAATAATAATAATAAATTTAAAA
**
119740729 TTATTT-TAAAAATAATAATTTTAAATTTA
1 TTATTTGTAAAAATAATAATAATAAATTTA
119740758 CGAGTTGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (33 bp):
TTATTTGTAAAAATAATAATAATAAATTTAAAA
Found at i:119746914 original size:21 final size:21
Alignment explanation
Indices: 119746865--119746920 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
119746855 TAAGAAAACA
119746865 AAATATAAA-AAT-TTACCAT
1 AAATATAAATAATATTACCAT
* *
119746884 AAA-AGGAAATAATATTATCAT
1 AAATA-TAAATAATATTACCAT
*
119746905 AAATATAAATATTATT
1 AAATATAAATAATATT
119746921 TATCTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 6 0.21
20 3 0.10
21 18 0.62
22 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATATAAATAATATTACCAT
Found at i:119750416 original size:7 final size:7
Alignment explanation
Indices: 119750404--119750429 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
119750394 TTGTTATTTA
119750404 TTTTATT
1 TTTTATT
119750411 TTTTATT
1 TTTTATT
119750418 TTTTATT
1 TTTTATT
119750425 TTTTA
1 TTTTA
119750430 ATATATGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:119752265 original size:15 final size:15
Alignment explanation
Indices: 119752245--119752273 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
119752235 TACTCGGTAT
119752245 AAAGATAACATATCC
1 AAAGATAACATATCC
119752260 AAAGATAACATATC
1 AAAGATAACATATC
119752274 TGTGTCGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.21
Consensus pattern (15 bp):
AAAGATAACATATCC
Found at i:119754920 original size:12 final size:12
Alignment explanation
Indices: 119754903--119754931 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
119754893 CCATATAATC
119754903 TCTCTTTTACTG
1 TCTCTTTTACTG
119754915 TCTCTTTTACTG
1 TCTCTTTTACTG
119754927 TCTCT
1 TCTCT
119754932 ATATACTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.07, T:0.59
Consensus pattern (12 bp):
TCTCTTTTACTG
Found at i:119756335 original size:26 final size:26
Alignment explanation
Indices: 119756284--119756337 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
119756274 CTTCGTATTA
119756284 TATAGATATATAATATCCATATCTCT
1 TATAGATATATAATATCCATATCTCT
119756310 TATAGATATATAATATCCATATCTCT
1 TATAGATATATAATATCCATATCTCT
119756336 TA
1 TA
119756338 CATGTGTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.15, G:0.04, T:0.43
Consensus pattern (26 bp):
TATAGATATATAATATCCATATCTCT
Found at i:119760427 original size:93 final size:93
Alignment explanation
Indices: 119760314--119760485 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
119760304 CGCCCATAAG
* * *
119760314 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
119760379 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
119760407 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
119760472 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
119760486 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:119760482 original size:46 final size:46
Alignment explanation
Indices: 119760307--119760482 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
119760297 TGTAACCCGC
* * *
119760307 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
119760353 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
119760403 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
119760446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
119760483 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:119760501 original size:46 final size:46
Alignment explanation
Indices: 119760310--119760502 Score: 141
Period size: 46 Copynumber: 4.2 Consensus size: 46
119760300 AACCCGCCCA
* * ** * *
119760310 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-C
*
119760355 ATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
119760404 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
119760449 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-C
119760496 T-AGTGAA
1 TAAGTGAA
119760503 ATGTCACTTG
Statistics
Matches: 117, Mismatches: 16, Indels: 28
0.73 0.10 0.17
Matches are distributed among these distances:
44 8 0.07
45 3 0.03
46 65 0.56
47 30 0.26
48 2 0.02
49 5 0.04
50 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:119773763 original size:19 final size:18
Alignment explanation
Indices: 119773716--119773763 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
119773706 TTCAAATATC
119773716 AATATTTTAATAATAAAAT
1 AATA-TTTAATAATAAAAT
* *
119773735 ATTATATTAATATTAAGAAT
1 AATAT-TTAATAATAA-AAT
119773755 AATATTTAA
1 AATATTTAA
119773764 ATTTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.67
20 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATATTTAATAATAAAAT
Found at i:119773882 original size:24 final size:24
Alignment explanation
Indices: 119773846--119773891 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
119773836 CTATAAATTA
* *
119773846 ATTATTATTTATTATTAAAATAAT
1 ATTACTATATATTATTAAAATAAT
*
119773870 ATTACTATATATTATTCAAATA
1 ATTACTATATATTATTAAAATA
119773892 TAAATATGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTACTATATATTATTAAAATAAT
Found at i:119788810 original size:11 final size:11
Alignment explanation
Indices: 119788794--119788844 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
119788784 AATGTTTATA
119788794 TATTTAATTTT
1 TATTTAATTTT
119788805 TATTTAATTTT
1 TATTTAATTTT
** *
119788816 TAAATAATATAT
1 TATTTAAT-TTT
119788828 T-TTTAATTTT
1 TATTTAATTTT
119788838 TATTTAA
1 TATTTAA
119788845 ATTATTGAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
10 3 0.09
11 26 0.81
12 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTAATTTT
Found at i:119788850 original size:22 final size:22
Alignment explanation
Indices: 119788794--119788850 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
119788784 AATGTTTATA
*
119788794 TATTTAATTTTTATTTAATTTT
1 TATTTAATTATTATTTAATTTT
**
119788816 TAAATAATATATT-TTTAATTTT
1 TATTTAAT-TATTATTTAATTTT
119788838 TATTTAAATTATT
1 TATTT-AATTATT
119788851 GAACATAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTTAATTATTATTTAATTTT
Found at i:119788906 original size:18 final size:19
Alignment explanation
Indices: 119788883--119788919 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
119788873 TTTATTTAAC
*
119788883 AATTCAAA-TATAATAAAA
1 AATTCAAACCATAATAAAA
119788901 AATTCAAACCATAATAAAA
1 AATTCAAACCATAATAAAA
119788920 GTATTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (19 bp):
AATTCAAACCATAATAAAA
Found at i:119789156 original size:22 final size:23
Alignment explanation
Indices: 119789109--119789157 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 23
119789099 AGCTTAATTA
119789109 AAATATATCAATTATTTTGGCAATTT
1 AAATATATCAATTATTTT-G--ATTT
119789135 AAATATATCAATTATTTT-ATTT
1 AAATATATCAATTATTTTGATTT
119789157 A
1 A
119789158 GGGAATGGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
26 18 0.78
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (23 bp):
AAATATATCAATTATTTTGATTT
Found at i:119790638 original size:17 final size:18
Alignment explanation
Indices: 119790596--119790639 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
119790586 TATTTCGAGG
*
119790596 TAACAAATAAATGAATAA
1 TAACAAATAAAAGAATAA
*
119790614 -AACGAATAAAAG-ATAA
1 TAACAAATAAAAGAATAA
119790630 TAACAAATAA
1 TAACAAATAA
119790640 GCTAGGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.68, C:0.07, G:0.07, T:0.18
Consensus pattern (18 bp):
TAACAAATAAAAGAATAA
Found at i:119791608 original size:40 final size:39
Alignment explanation
Indices: 119791465--119791621 Score: 244
Period size: 39 Copynumber: 4.0 Consensus size: 39
119791455 TTGATTCCAC
* * * *
119791465 TCCCCCATGCTACTTTGTTTTATTATTAATTAAAACTAC
1 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACCAT
*
119791504 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
1 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACCAT
119791543 T-CCCCATACTATTTTGTTTTCATTATTAATTAAAACCAT
1 TCCCCCATACTATTTTGTTTT-ATTATTAATTAAAACCAT
119791582 TCCCCCATACTATTTTGGTTTTATTATTAATTAAAACCAT
1 TCCCCCATACTATTTT-GTTTTATTATTAATTAAAACCAT
119791622 ACTTTATTTT
Statistics
Matches: 111, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
38 19 0.17
39 55 0.50
40 32 0.29
41 5 0.05
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (39 bp):
TCCCCCATACTATTTTGTTTTATTATTAATTAAAACCAT
Found at i:119797351 original size:1 final size:1
Alignment explanation
Indices: 119797345--119797370 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
119797335 TAGCCTCTAC
119797345 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
119797371 GAAGTTGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:119812036 original size:22 final size:23
Alignment explanation
Indices: 119812008--119812052 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
119811998 TTCAAAACTG
119812008 AAATATT-TTTAAAAATTTTTAA
1 AAATATTATTTAAAAATTTTTAA
* *
119812030 AAATATTATTTTAAATTTTTTAA
1 AAATATTATTTAAAAATTTTTAA
119812053 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AAATATTATTTAAAAATTTTTAA
Found at i:119812124 original size:36 final size:37
Alignment explanation
Indices: 119812084--119812154 Score: 101
Period size: 36 Copynumber: 1.9 Consensus size: 37
119812074 GAAAAAAATA
* *
119812084 TTAAAAATATAAAAAT-ATTAAATAA-AATTTAAAAAG
1 TTAAAAAAATAAAAATAAATAAA-AATAATTTAAAAAG
119812120 TTAAAAAAATAAAAATAAATAAAAATAATTTAAAA
1 TTAAAAAAATAAAAATAAATAAAAATAATTTAAAA
119812155 GTTTAAGTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 17 0.55
37 14 0.45
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (37 bp):
TTAAAAAAATAAAAATAAATAAAAATAATTTAAAAAG
Found at i:119812631 original size:21 final size:22
Alignment explanation
Indices: 119812607--119812659 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
119812597 ATTTTTTTGG
*
119812607 AAATTTATTTAAT-TTTTTATA
1 AAATTTATTTAATGTTTTTACA
*
119812628 AAATTTA-ATAATGTTTTTACA
1 AAATTTATTTAATGTTTTTACA
119812649 AAATTATATTT
1 AAATT-TATTT
119812660 TAAAAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
21 19 0.73
22 2 0.08
23 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
AAATTTATTTAATGTTTTTACA
Found at i:119812676 original size:16 final size:16
Alignment explanation
Indices: 119812636--119812691 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
119812626 TAAAATTTAA
*
119812636 TAATGTTTTTACAAAAT
1 TAAT-TTTTTAAAAAAT
*
119812653 T-ATATTTTAAAAAAT
1 TAATTTTTTAAAAAAT
*
119812668 TAATTTTTTAAAATAT
1 TAATTTTTTAAAAAAT
*
119812684 TTATTTTT
1 TAATTTTT
119812692 AATTAAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
15 11 0.33
16 21 0.64
17 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TAATTTTTTAAAAAAT
Found at i:119812691 original size:15 final size:15
Alignment explanation
Indices: 119812641--119812693 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
119812631 TTTAATAATG
*
119812641 TTTTTACAAAA-TTA
1 TTTTTAAAAAATTTA
*
119812655 TATTTTAAAAAATTAA
1 T-TTTTAAAAAATTTA
*
119812671 TTTTTTAAAATATTTA
1 -TTTTTAAAAAATTTA
119812687 TTTTTAA
1 TTTTTAA
119812694 TTAAATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 1 0.03
15 16 0.50
16 14 0.44
17 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTTTAAAAAATTTA
Found at i:119817247 original size:30 final size:30
Alignment explanation
Indices: 119817211--119817271 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
119817201 GTTGTGGGCA
*
119817211 AGTAATGTTACCGCTCATAAATTAAATCAT
1 AGTAATGTTACCGCTCACAAATTAAATCAT
* *
119817241 AGTAATGTTACTGCTCACAACTTAAATCAT
1 AGTAATGTTACCGCTCACAAATTAAATCAT
119817271 A
1 A
119817272 CTGCTCTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (30 bp):
AGTAATGTTACCGCTCACAAATTAAATCAT
Found at i:119817275 original size:21 final size:21
Alignment explanation
Indices: 119817249--119817292 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
119817239 ATAGTAATGT
*
119817249 TACTGCTCACAACTTAAATCA
1 TACTGCTCACAAATTAAATCA
*
119817270 TACTGCTCTCAAATTAAATCA
1 TACTGCTCACAAATTAAATCA
119817291 TA
1 TA
119817293 ACGTTGACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.32
Consensus pattern (21 bp):
TACTGCTCACAAATTAAATCA
Found at i:119820931 original size:16 final size:16
Alignment explanation
Indices: 119820912--119820970 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
119820902 AGTTAGTGTG
*
119820912 TATAAAAATATATATC
1 TATAAAAATATATATA
*
119820928 TATAAAAACATATATA
1 TATAAAAATATATATA
* *
119820944 TATATATATATATATA
1 TATAAAAATATATATA
*
119820960 TGAGAAAAATA
1 T-ATAAAAATA
119820971 AGTTTTCCAA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
16 28 0.82
17 6 0.18
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (16 bp):
TATAAAAATATATATA
Found at i:119820942 original size:18 final size:17
Alignment explanation
Indices: 119820915--119820949 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
119820905 TAGTGTGTAT
*
119820915 AAAAATATATATCTATA
1 AAAAATATATATATATA
119820932 AAAACATATATATATATA
1 AAAA-ATATATATATATA
119820950 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATATATATATATA
Found at i:119839038 original size:40 final size:40
Alignment explanation
Indices: 119838978--119839189 Score: 144
Period size: 39 Copynumber: 5.4 Consensus size: 40
119838968 ATTTGATGTG
*
119838978 TATCTGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTA
* *
119839018 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
* * ** * * * * *
119839058 TATCCGGACAT-AAGGTCCACATGTTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
* * * * *
119839097 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
*** ** * * * * *
119839136 TATCCAAACTT-AAGGTCCACAGGCTTCGTACTGGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
119839175 TATCCGGGCTTAAAG
1 TATCCGGGCTTAAAG
119839190 TCCTGTAGGC
Statistics
Matches: 144, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 97 0.67
40 47 0.33
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
Found at i:119839140 original size:78 final size:79
Alignment explanation
Indices: 119839007--119839189 Score: 224
Period size: 78 Copynumber: 2.3 Consensus size: 79
119838997 GCAGGCTATA
* * * **
119839007 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACATAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCAAACATAAG
119839072 GTCCACATGTTTCG
66 GTCCACATGTTTCG
* * * *
119839086 TGCTGGAATTGTATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGTACTATATCCAAACTTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCAAACATAAG
* *
119839150 GTCCACAGGCTTCG
66 GTCCACATGTTTCG
* * * *
119839164 TACTGGTACTATATCCGGGCTTAAAG
1 TGCTGGAATTATATCCGGACTTAAAG
119839190 TCCTGTAGGC
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 64 0.74
79 23 0.26
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCAAACATAAG
GTCCACATGTTTCG
Found at i:119839187 original size:39 final size:39
Alignment explanation
Indices: 119839007--119839192 Score: 174
Period size: 39 Copynumber: 4.7 Consensus size: 39
119838997 GCAGGCTATA
* * ** *
119839007 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCG
1 TGCTGGAACTATATCCGGACTT-AAGGTCCACAGGCTTCG
* * * * *
119839047 TGCTGGAATTGTATCCGGACATAAGGTCCACATGTTTCG
1 TGCTGGAACTATATCCGGACTTAAGGTCCACAGGCTTCG
* * * *
119839086 TGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCG
1 TGCTGGAACTATATCCGGACTTAAGGTCCACAGGCTTCG
* **
119839125 TGCTGGTACTATATCCAAACTTAAGGTCCACAGGCTTCG
1 TGCTGGAACTATATCCGGACTTAAGGTCCACAGGCTTCG
* * * *
119839164 TACTGGTACTATATCCGGGCTTAAAGTCC
1 TGCTGGAACTATATCCGGACTTAAGGTCC
119839193 TGTAGGCTTT
Statistics
Matches: 121, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 102 0.84
40 19 0.16
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (39 bp):
TGCTGGAACTATATCCGGACTTAAGGTCCACAGGCTTCG
Found at i:119851029 original size:6 final size:6
Alignment explanation
Indices: 119851018--119851057 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
119851008 TTTGTGGTAT
119851018 AATATA AATATA AATATA AATATA AATATA AATATA AATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATA
119851058 ATATTAGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:119852089 original size:16 final size:17
Alignment explanation
Indices: 119852063--119852096 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
119852053 AGTTAAATTA
119852063 ATTACATATGAATTATT
1 ATTACATATGAATTATT
*
119852080 ATTA-ATATGAGTTATT
1 ATTACATATGAATTATT
119852096 A
1 A
119852097 AATTTGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (17 bp):
ATTACATATGAATTATT
Found at i:119852750 original size:26 final size:25
Alignment explanation
Indices: 119852707--119852755 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
119852697 AACCCCACTA
119852707 ACCCACAAACCCAAACAATAACCCTT
1 ACCCACAAACCCAAACAA-AACCCTT
*
119852733 ACCCA-AAACCCATTACAAAACCC
1 ACCCACAAACCCA-AACAAAACCC
119852756 AAATACCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (25 bp):
ACCCACAAACCCAAACAAAACCCTT
Found at i:119865088 original size:131 final size:132
Alignment explanation
Indices: 119864927--119865317 Score: 441
Period size: 131 Copynumber: 3.0 Consensus size: 132
119864917 GAATTTGGAG
* * *
119864927 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAC-AGGAGATCGTAACCCAGC
1 AACATGAGTGAAATCCTAAAGGAATATTCGATTATTTTGAACAAACGA-GAAATCGCAACCCAGC
* * * * **
119864991 ACGATAGAGAACGATTCCCCGAATTGCCAATCATCGAGCACTACCTTCGTTTTGGAGAATTTTTA
65 ACGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACTACCTTCATTTTAAAGAATTTTTA
119865056 -AA
130 GAA
* * * *
119865058 AGCATGAGTGAAATCCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCTAACA
1 AACATGAGTGAAATCCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAGCA
* * ** * * * *
119865123 CGATAGGGTACGACTCCCTAAATTGCCAAACATCGAACATTTCCTTTATTTTAAAGAGTTTTTAG
66 CGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACTACCTTCATTTTAAAGAATTTTTAG
119865188 AA
131 AA
* ** * *
119865190 AACATGAGTGAAATTCC--AAGGGACGTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGC
1 AACATGAGTGAAA-TCCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAGC
* * * * *
119865253 ACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACA-TCGCCTTCATTTCAAAGAATTTTT
65 ACGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACT-ACCTTCATTTTAAAGAATTTTT
119865317 A
129 A
119865318 AATAGTTATA
Statistics
Matches: 216, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
130 1 0.00
131 197 0.91
132 15 0.07
133 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (132 bp):
AACATGAGTGAAATCCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAGCA
CGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACTACCTTCATTTTAAAGAATTTTTAG
AA
Found at i:119868716 original size:14 final size:14
Alignment explanation
Indices: 119868697--119868723 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
119868687 GAAAACAACC
119868697 AAAATAAATAAAAT
1 AAAATAAATAAAAT
119868711 AAAATAAATAAAA
1 AAAATAAATAAAA
119868724 CAAAGACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:119870156 original size:9 final size:9
Alignment explanation
Indices: 119870142--119870171 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
119870132 TTGAGGAAAC
*
119870142 CTTGGTATG
1 CTTGGTTTG
119870151 CTTGGTTTG
1 CTTGGTTTG
119870160 CTTGGTTTG
1 CTTGGTTTG
119870169 CTT
1 CTT
119870172 TGTGGCTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.03, C:0.13, G:0.30, T:0.53
Consensus pattern (9 bp):
CTTGGTTTG
Found at i:119877536 original size:29 final size:28
Alignment explanation
Indices: 119877504--119877568 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
119877494 ATTTTACGTG
* *
119877504 TATAATTATAC-TAAATTAAAGTTTATTTA
1 TATAATTACACATAAATTAAAATTTA--TA
119877533 TATAATTACACATTAAATTAAAATTTATA
1 TATAATTACACA-TAAATTAAAATTTATA
119877562 TATAATT
1 TATAATT
119877569 TTAACATTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 19 0.59
31 13 0.41
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (28 bp):
TATAATTACACATAAATTAAAATTTATA
Found at i:119879654 original size:16 final size:16
Alignment explanation
Indices: 119879635--119879685 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
119879625 TTTATGTATA
119879635 TATTTTCTTTTAAATC
1 TATTTTCTTTTAAATC
* *
119879651 TATTTAT-GTTT--ATA
1 TATTT-TCTTTTAAATC
119879665 TATTTTCTTTTAAATC
1 TATTTTCTTTTAAATC
119879681 TATTT
1 TATTT
119879686 ATGTTTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
13 1 0.04
14 10 0.37
16 15 0.56
17 1 0.04
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTTTCTTTTAAATC
Found at i:119879665 original size:30 final size:30
Alignment explanation
Indices: 119879631--119879707 Score: 154
Period size: 30 Copynumber: 2.6 Consensus size: 30
119879621 TTATTTTATG
119879631 TATATATTTTCTTTTAAATCTATTTATGTT
1 TATATATTTTCTTTTAAATCTATTTATGTT
119879661 TATATATTTTCTTTTAAATCTATTTATGTT
1 TATATATTTTCTTTTAAATCTATTTATGTT
119879691 TATATATTTTCTTTTAA
1 TATATATTTTCTTTTAA
119879708 GTCTGTATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (30 bp):
TATATATTTTCTTTTAAATCTATTTATGTT
Found at i:119879676 original size:14 final size:14
Alignment explanation
Indices: 119879631--119879706 Score: 62
Period size: 14 Copynumber: 5.1 Consensus size: 14
119879621 TTATTTTATG
119879631 TATATATTTTCTTT
1 TATATATTTTCTTT
* * *
119879645 TAAATCTATTTATGTT
1 TATATAT-TTTCT-TT
119879661 TATATATTTTCTTT
1 TATATATTTTCTTT
* * *
119879675 TAAATCTATTTATGTT
1 TATATAT-TTTCT-TT
119879691 TATATATTTTCTTT
1 TATATATTTTCTTT
119879705 TA
1 TA
119879707 AGTCTGTATA
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 16 0.35
15 16 0.35
16 14 0.30
ACGTcount: A:0.26, C:0.07, G:0.03, T:0.64
Consensus pattern (14 bp):
TATATATTTTCTTT
Found at i:119879692 original size:16 final size:16
Alignment explanation
Indices: 119879643--119879692 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
119879633 TATATTTTCT
119879643 TTTAAATCTATTTATG
1 TTTAAATCTATTTATG
* * *
119879659 TTTATATAT-TTTCT-
1 TTTAAATCTATTTATG
119879673 TTTAAATCTATTTATG
1 TTTAAATCTATTTATG
119879689 TTTA
1 TTTA
119879693 TATATTTTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 7 0.27
15 8 0.31
16 11 0.42
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (16 bp):
TTTAAATCTATTTATG
Found at i:119879893 original size:6 final size:6
Alignment explanation
Indices: 119879882--119879914 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
119879872 TCATGCATTA
119879882 TTTATT TTTATT TTTATT TTTATT TCTTATT TT
1 TTTATT TTTATT TTTATT TTTATT T-TTATT TT
119879915 CTATCTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:119880496 original size:16 final size:17
Alignment explanation
Indices: 119880465--119880497 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119880455 TTCATAAGTA
119880465 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
119880482 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
119880498 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:119880846 original size:46 final size:46
Alignment explanation
Indices: 119880796--119881050 Score: 307
Period size: 46 Copynumber: 5.5 Consensus size: 46
119880786 CCATAGTGTA
* *
119880796 TTTCAACTATGGTCTTACTCATTTTCTGCCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATC
* *
119880842 TTTCAACCATGGTCTTATTC-TTTTCATGTCACGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATC
* * * * *
119880888 TTTCAACCATGGTTTTATTCATTTTATGTCACGCTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATC
* * *
119880934 TTTCAACCCTGGTCTTAATTCATTTCCTGTCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTT-ACTCATTTTCTGTCATGTTGCCATGGTATC
* * * * *
119880981 TTTCAACCGTGGTCTTACACA-TTGCATATCATGCTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATC
*
119881027 TTTCAACCATGGTCTTACACATTT
1 TTTCAACCATGGTCTTACTCATTT
119881051 CATTTCGGAA
Statistics
Matches: 184, Mismatches: 20, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
45 8 0.04
46 129 0.70
47 47 0.26
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATC
Found at i:119881017 original size:93 final size:93
Alignment explanation
Indices: 119880825--119881043 Score: 314
Period size: 93 Copynumber: 2.4 Consensus size: 93
119880815 CATTTTCTGC
* *
119880825 CATGTTGCCATGGTATCTTTCAACCATGGTCTT-ATTCTTTTCATGTCACGTTGCCATGGTATCT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTAATTCATTTCATGTCACGTTGCCATGGTATCT
* ** ** *
119880889 TTCAACCATGGTTTTATTCATTTTATGT
66 TTCAACCATGGTCTTACACATTGCATAT
* * * *
119880917 CACGCTGCCATGGTATCTTTCAACCCTGGTCTTAATTCATTTCCTGTCATGTTGCCATGGTATCT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTAATTCATTTCATGTCACGTTGCCATGGTATCT
*
119880982 TTCAACCGTGGTCTTACACATTGCATAT
66 TTCAACCATGGTCTTACACATTGCATAT
119881010 CATGCTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTA
119881044 CACATTTCAT
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 30 0.27
93 81 0.73
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.41
Consensus pattern (93 bp):
CATGCTGCCATGGTATCTTTCAACCATGGTCTTAATTCATTTCATGTCACGTTGCCATGGTATCT
TTCAACCATGGTCTTACACATTGCATAT
Found at i:119881050 original size:139 final size:138
Alignment explanation
Indices: 119880796--119881050 Score: 357
Period size: 139 Copynumber: 1.8 Consensus size: 138
119880786 CCATAGTGTA
* * **
119880796 TTTCAACTATGGTCTTACTCATTTTCTGCCATGTTGCCATGGTATCTTTCAACCATGGTCTTATT
1 TTTCAACCATGGTCTTACTCATTTCCTGCCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
* * * * * **
119880861 CTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTTTTATTCATTTTATGTCACGCTGCC
66 CATTGCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATGTCACGCTGCC
119880926 ATGGTATC
131 ATGGTATC
* * * *
119880934 TTTCAACCCTGGTCTTAATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCGTGGTCTTAC
1 TTTCAACCATGGTCTT-ACTCATTTCCTGCCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
119880999 ACATTGCATATCATGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
65 ACATTGCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
119881051 CATTTCGGAA
Statistics
Matches: 100, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
138 14 0.14
139 86 0.86
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (138 bp):
TTTCAACCATGGTCTTACTCATTTCCTGCCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
CATTGCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATGTCACGCTGCC
ATGGTATC
Found at i:119885355 original size:26 final size:26
Alignment explanation
Indices: 119885324--119885431 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
119885314 TGAAATGCCC
*
119885324 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
119885350 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
119885376 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
119885402 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
119885428 ATCA
1 ATCA
119885432 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:119892544 original size:14 final size:14
Alignment explanation
Indices: 119892525--119892551 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
119892515 GAAAACAACC
119892525 AAAATAAATAAAAT
1 AAAATAAATAAAAT
119892539 AAAATAAATAAAA
1 AAAATAAATAAAA
119892552 CAAAGACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:119893964 original size:9 final size:9
Alignment explanation
Indices: 119893950--119893979 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
119893940 TTGAGGAAAC
*
119893950 CTTGGTATG
1 CTTGGTTTG
119893959 CTTGGTTTG
1 CTTGGTTTG
119893968 CTTGGTTTG
1 CTTGGTTTG
119893977 CTT
1 CTT
119893980 TGTGGCTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.03, C:0.13, G:0.30, T:0.53
Consensus pattern (9 bp):
CTTGGTTTG
Found at i:119896657 original size:23 final size:22
Alignment explanation
Indices: 119896617--119896672 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
119896607 CCAATTTCAC
119896617 ATAAAGATATACCTA-TATATATA
1 ATAAAGATATA--TACTATATATA
* *
119896640 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
119896661 ATAAA-ATATATA
1 ATAAAGATATATA
119896673 AATAACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
23 10 0.34
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:119896785 original size:31 final size:32
Alignment explanation
Indices: 119896711--119896785 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 32
119896701 GCAATATGTC
119896711 TGATAAAAATAATAATATACATAATATATAAAA
1 TGAT-AAAATAATAATATACATAATATATAAAA
*
119896744 -AATACAAATAAT-ATATACAT-ATACTA-AAAA
1 TGATA-AAATAATAATATACATAATA-TATAAAA
119896774 TGATAATAATAA
1 TGATAA-AATAA
119896786 AAAATAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
30 8 0.22
31 19 0.53
32 9 0.25
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (32 bp):
TGATAAAATAATAATATACATAATATATAAAA
Found at i:119896856 original size:3 final size:3
Alignment explanation
Indices: 119896837--119896878 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
119896827 TCTATGTACC
*
119896837 AAT AAT ATT AAT AAAT AAT AGAT AAT AAT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT -AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA
119896879 CGATAATAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 26 0.76
4 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:119896883 original size:23 final size:21
Alignment explanation
Indices: 119896850--119896892 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
119896840 AATATTAATA
119896850 AATAATAGATAATAATAAAAT
1 AATAATAGATAATAATAAAAT
*
119896871 AATAATAACGATAATAGTAAAA
1 AATAAT-A-GATAATAATAAAA
119896893 ATACAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
AATAATAGATAATAATAAAAT
Found at i:119897129 original size:24 final size:23
Alignment explanation
Indices: 119897081--119897129 Score: 84
Period size: 22 Copynumber: 2.2 Consensus size: 23
119897071 TAAGTATGGT
119897081 ATAATATAACAATGATAATAATA
1 ATAATATAACAATGATAATAATA
119897104 ATAA-ATAACAATGAT-ATAATA
1 ATAATATAACAATGATAATAATA
119897125 ATAAT
1 ATAAT
119897130 CTAGTGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.40
22 11 0.44
23 4 0.16
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAATATAACAATGATAATAATA
Found at i:119897946 original size:133 final size:133
Alignment explanation
Indices: 119897708--119897965 Score: 399
Period size: 133 Copynumber: 1.9 Consensus size: 133
119897698 AGGTAAACCT
* * * * *
119897708 TGAAGTTGCAGTGGAGTAGATCGAAGACGGTGAATCCTGTCTTCCTGAAGTTGCAGTGAAGCAGA
1 TGAAGTTGCAGTGGAGCAGATCGAAAACGGCGAATCCTGGCTTCCTGAAGTTGCAGTAAAGCAGA
* *
119897773 TTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGCAGAGTAAGCTAAAGATTGTAGATCTTGTTT
66 TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGCAGAGTAAGCTAAAGATTGCAGATCTTGTTT
119897838 CCC
131 CCC
* *
119897841 TGAAGTTGCAGTGGAGCGGATCGAAAACGGCGAATCTTGGCTTCCTGAAGTTGCAGTAAAGCAGA
1 TGAAGTTGCAGTGGAGCAGATCGAAAACGGCGAATCCTGGCTTCCTGAAGTTGCAGTAAAGCAGA
** * *
119897906 TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTACGCTGAAGATTGCAGATCT
66 TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGCAGAGTAAGCTAAAGATTGCAGATCT
119897966 CGTCTCCAGT
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 112 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (133 bp):
TGAAGTTGCAGTGGAGCAGATCGAAAACGGCGAATCCTGGCTTCCTGAAGTTGCAGTAAAGCAGA
TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGCAGAGTAAGCTAAAGATTGCAGATCTTGTTT
CCC
Found at i:119901084 original size:131 final size:132
Alignment explanation
Indices: 119900763--119901121 Score: 436
Period size: 131 Copynumber: 2.7 Consensus size: 132
119900753 AAGGCGATGT
* * * *
119900763 TCGATATTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAA
1 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAA
* * * ***
119900828 AATAATCGAAT-GTCCCTTGGAATTTCACTCATGTTTTCTAAAAACTCTTTTAAACAAAGGAAAT
66 AATAATCGAATATTCCTTTGGAATTTCACTCATGCTTTCTAAAAACTCTCCAAAACAAAGGAAAT
*
119900892 GT
131 GC
* * * *
119900894 TCGATGTTTGGCAATTCGGAGAGTCGTACCCTATCGTGTTGGGTTGCGATTTCTCGTTTGTTCAA
1 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAA
* * * * * *
119900959 AACAATCGAATATTCCTTTGGGATTTCACTCATGCTTT-TAAAAATTCTCCAAAACGAAGGTAGT
66 AATAATCGAATATTCCTTTGGAATTTCACTCATGCTTTCTAAAAACTCTCCAAAACAAAGGAAAT
119901023 GC
131 GC
* * * * *
119901025 TCGATGTTTGGCAATTCGGGGAATCGTGCTCTATCGTACTGGGTTGTGATCTC-CTGTTTGTTTA
1 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTC-GTTTGTTCA
* *
119901089 AAATAATCAAATATTCCTTTAGAATTTCACTCA
65 AAATAATCGAATATTCCTTTGGAATTTCACTCA
119901122 CGTTCTCCAA
Statistics
Matches: 192, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
130 1 0.01
131 169 0.88
132 22 0.11
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (132 bp):
TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAA
AATAATCGAATATTCCTTTGGAATTTCACTCATGCTTTCTAAAAACTCTCCAAAACAAAGGAAAT
GC
Found at i:119902395 original size:19 final size:19
Alignment explanation
Indices: 119902371--119902468 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
119902361 AATCTTTAAG
119902371 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
119902390 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
119902409 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
119902428 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
119902445 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
119902466 GAT
1 GAT
119902469 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:119911983 original size:45 final size:45
Alignment explanation
Indices: 119911914--119912543 Score: 381
Period size: 45 Copynumber: 14.7 Consensus size: 45
119911904 TCATTGGGGC
* * *
119911914 AGATACAAGATGACAGATCTTATCTCTCTATAATGGGCGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* *
119911959 AGATCCAAGATGACAGATCTTATCTCTCTGTATTTGACGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * * *
119912004 AGATCAAAGATATAGCAGATCTGA---C-CT-TCAT---C-GGG-GC
1 AGATCCAAGAT-GA-CAGATCTTATCTCTCTGTAATGGACGGGGAGT
* *
119912041 AGATCCAAGATGACAGATCTTATCTCTCTATAATGGATGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * *
119912086 GGATCAAAGATGACAGATCTTATCTCTTTGTAATGGGCGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * *
119912131 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACTGGGAGC
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * * *
119912176 AGATCGAAGACAT-AGTAGATCTGA---C-CT-TCAT---C-GGG-GC
1 AGATCCAAG--ATGA-CAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * *
119912213 AGATCCAAGATGACAGATCTTATATCTCTGTAATGGGCGGAGAAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* *
119912258 AGATCTAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * *
119912303 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGATGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* ** * *
119912348 AGAT-CAA-A-GACATATCAGATCTGAC-CT-TCAT---C-GGG-GC
1 AGATCCAAGATGACAGATCTTATCT--CTCTGTAATGGACGGGGAGT
* * * *
119912385 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * * * *
119912430 AAATCAAAGACAT-AGCAGATCTGA---C-CT-TCAT---C-GAG-GC
1 AGATCCAAG--ATGA-CAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * * * *
119912467 AGATCCAAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
119912512 AGATCCAAGATGACAGATCTTATCTCTCTGTA
1 AGATCCAAGATGACAGATCTTATCTCTCTGTA
119912544 TTCAATGGGG
Statistics
Matches: 450, Mismatches: 83, Indels: 104
0.71 0.13 0.16
Matches are distributed among these distances:
35 26 0.06
36 2 0.00
37 35 0.08
38 17 0.04
39 11 0.02
40 22 0.05
42 19 0.04
43 12 0.03
44 17 0.04
45 259 0.58
46 3 0.01
47 27 0.06
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (45 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
Found at i:119912064 original size:127 final size:126
Alignment explanation
Indices: 119911838--119912150 Score: 448
Period size: 127 Copynumber: 2.5 Consensus size: 126
119911828 GAACAAGTTG
* ** *
119911838 AAGATAACAGATCTTATCTCTCTGTATTCGACGGGGAACAGATCGAAGACTTAGCAGATCTGACC
1 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGA-TTAGCAGATCTGACC
* * *
119911903 TTCATTGGGGCAGATACAAGATGACAGATCTTATCTCTCTATAATGGGCGGGGAGTAGATCC
65 TTCATCGGGGCAGATACAAGATGACAGATCTTATCTCTCTATAATGGACGGGGAGTAGATCA
*
119911965 AAGATGACAGATCTTATCTCTCTGTATTTGACGGGGAGTAGATCAAAGATATAGCAGATCTGACC
1 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGAT-TAGCAGATCTGACC
* * *
119912030 TTCATCGGGGCAGATCCAAGATGACAGATCTTATCTCTCTATAATGGATGGGGAGTGGATCA
65 TTCATCGGGGCAGATACAAGATGACAGATCTTATCTCTCTATAATGGACGGGGAGTAGATCA
* * * * * *
119912092 AAGATGACAGATCTTATCTCTTTGTAATGGGCGGGGAGTAGATCCAAGATGA-CAGATCT
1 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATTAGCAGATCT
119912151 TATCTCTCTG
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
125 7 0.04
126 2 0.01
127 159 0.95
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (126 bp):
AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATTAGCAGATCTGACCT
TCATCGGGGCAGATACAAGATGACAGATCTTATCTCTCTATAATGGACGGGGAGTAGATCA
Found at i:119912091 original size:82 final size:82
Alignment explanation
Indices: 119911959--119912522 Score: 533
Period size: 82 Copynumber: 6.7 Consensus size: 82
119911949 GGCGGGGAGT
*
119911959 AGATCCAAGATGACAGATCTTATCTCTCTGTATTTGACGGGGAGTAGATCAAAGATATAGCAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
119912024 CTGACCTTCATCGGGGC
66 CTGACCTTCATCGGGGC
* * * * * *
119912041 AGATCCAAGATGACAGATCTTATCTCTCTATAATGGATGGGGAGTGGATCAAAGAT-GA-CAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
* * *
119912104 CTTATCTCTTTGTAATGGGCGGGGAGT
66 CTGA-C-C--T-TCAT---C-GGG-GC
* * * * *
119912131 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGTAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
119912196 CTGACCTTCATCGGGGC
66 CTGACCTTCATCGGGGC
* * * * * * * *
119912213 AGATCCAAGATGACAGATCTTATATCTCTGTAATGGGCGGAGAATAGATCTAAGAT-GA-CAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
* * *
119912276 CTTATCTCTCTGTAATGGACGGAGAGT
66 CTGA---C-CT-TCAT---CGG-G-GC
* * * *
119912303 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGATGGGGAGTAGATCAAAGACATATCAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
119912368 CTGACCTTCATCGGGGC
66 CTGACCTTCATCGGGGC
* * * *
119912385 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAAATCAAAGACATAGCAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
*
119912450 CTGACCTTCATCGAGGC
66 CTGACCTTCATCGGGGC
* * * * * * * *
119912467 AGATCCAAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGAGTAGATCCAAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGAT
119912523 GACAGATCTT
Statistics
Matches: 389, Mismatches: 69, Indels: 48
0.77 0.14 0.09
Matches are distributed among these distances:
80 15 0.04
81 3 0.01
82 221 0.57
83 5 0.01
84 7 0.02
85 6 0.02
87 6 0.02
88 7 0.02
89 5 0.01
90 96 0.25
91 3 0.01
92 15 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (82 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGATATAGCAGAT
CTGACCTTCATCGGGGC
Found at i:119912223 original size:127 final size:127
Alignment explanation
Indices: 119912087--119912606 Score: 485
Period size: 127 Copynumber: 4.1 Consensus size: 127
119912077 ATGGGGAGTG
* * *
119912087 GATCAAAGATGACAGATCTTATCTCTTTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTT
1 GATCCAAGATGACAGATCTTATCTCTCTGTAATGGGCGGAGAGTAGATCCAAGATGACAGATCTT
*
119912152 ATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGGGGCA
66 ATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGAGGCA
* * *
119912214 GATCCAAGATGACAGATCTTATATCTCTGTAATGGGCGGAGAATAGATCTAAGATGACAGATCTT
1 GATCCAAGATGACAGATCTTATCTCTCTGTAATGGGCGGAGAGTAGATCCAAGATGACAGATCTT
* * * * * * *
119912279 ATCTCTCTGTAATGGAC-GGAGAGTAGATCTAAG--AT-GACAGATCTTATCTCTCTGTATTCGA
66 ATCTCTCTGTATTCGACTGG-GAGCAGATCGAAGACATAG-TAGATCTGA-C-CT-T-CA-TCGA
*
119912340 TGGGGAGTA
124 ----G-GCA
* ** * * *
119912349 GAT-CAA-A-GACATATCAGATCTGAC-CT-TCAT---CGG-G-GCAGATCTAAGATGACAGATC
1 GATCCAAGATGACAGATCTTATCT--CTCTGTAATGGGCGGAGAGTAGATCCAAGATGACAGATC
* * * *
119912404 TTATCTCTCTGTATTCGACGGGGAGCAAATCAAAGACATAGCAGATCTGACCTTCATCGAGGCA
64 TTATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGAGGCA
* * * * *
119912468 GATCCAAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTT
1 GATCCAAGATGACAGATCTTATCTCTCTGTAATGGGCGGAGAGTAGATCCAAGATGACAGATCTT
* * * * *
119912533 ATCTCTCTGTATTC-AATGGGGAGCAGATCGAAAACATAGTAGATCTGACTTTCATCAAAGCA
66 ATCTCTCTGTATTCGACT-GGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGAGGCA
119912595 GATCCAAGATGA
1 GATCCAAGATGA
119912607 TTTGGCATCT
Statistics
Matches: 314, Mismatches: 50, Indels: 58
0.74 0.12 0.14
Matches are distributed among these distances:
119 5 0.02
120 5 0.02
121 2 0.01
122 11 0.04
124 5 0.02
125 13 0.04
126 6 0.02
127 218 0.69
128 5 0.02
129 14 0.04
130 4 0.01
132 13 0.04
133 3 0.01
134 5 0.02
135 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (127 bp):
GATCCAAGATGACAGATCTTATCTCTCTGTAATGGGCGGAGAGTAGATCCAAGATGACAGATCTT
ATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGAGGCA
Found at i:119912415 original size:172 final size:172
Alignment explanation
Indices: 119911920--119912416 Score: 782
Period size: 172 Copynumber: 2.9 Consensus size: 172
119911910 GGGCAGATAC
*
119911920 AAGATGACAGATCTTATCTCTCTATAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
1 AAGATGACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
* * * *
119911985 TCTGTATTTGACGGGGAGTAGATCAAAGATATAGCAGATCTGACCTTCATCGGGGCAGATCCAAG
66 TCTGTATTCGATGGGGAGTAGATCAAAGACATATCAGATCTGACCTTCATCGGGGCAGATCCAAG
* * * * *
119912050 ATGACAGATCTTATCTCTCTATAATGGATGGGGAGTGGATCA
131 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAATAGATCA
*
119912092 AAGATGACAGATCTTATCTCTTTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
1 AAGATGACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
* *
119912157 TCTGTATTCGACT-GGGAGCAGATCGAAGACATAGT-AGATCTGACCTTCATCGGGGCAGATCCA
66 TCTGTATTCGA-TGGGGAGTAGATCAAAGACATA-TCAGATCTGACCTTCATCGGGGCAGATCCA
* * *
119912220 AGATGACAGATCTTATATCTCTGTAATGGGCGGAGAATAGATCT
129 AGATGACAGATCTTATCTCTCTGTAATGGACGGAGAATAGATCA
* * *
119912264 AAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCTAAGATGACAGATCTTATCTC
1 AAGATGACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
*
119912329 TCTGTATTCGATGGGGAGTAGATCAAAGACATATCAGATCTGACCTTCATCGGGGCAGATCTAAG
66 TCTGTATTCGATGGGGAGTAGATCAAAGACATATCAGATCTGACCTTCATCGGGGCAGATCCAAG
119912394 ATGACAGATCTTATCTCTCTGTA
131 ATGACAGATCTTATCTCTCTGTA
119912417 TTCGACGGGG
Statistics
Matches: 297, Mismatches: 24, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
171 2 0.01
172 295 0.99
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (172 bp):
AAGATGACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
TCTGTATTCGATGGGGAGTAGATCAAAGACATATCAGATCTGACCTTCATCGGGGCAGATCCAAG
ATGACAGATCTTATCTCTCTGTAATGGACGGAGAATAGATCA
Found at i:119912561 original size:45 final size:45
Alignment explanation
Indices: 119912465--119912561 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 45
119912455 CTTCATCGAG
* * **
119912465 GCAGATCCAAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGA
1 GCAGATCCAAGATGACAGATCTTATCCCTCCGTAATCAACGGAGA
* * * * * *
119912510 GTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAATGGGGA
1 GCAGATCCAAGATGACAGATCTTATCCCTCCGTAATCAACGGAGA
119912555 GCAGATC
1 GCAGATC
119912562 GAAAACATAG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (45 bp):
GCAGATCCAAGATGACAGATCTTATCCCTCCGTAATCAACGGAGA
Found at i:119914212 original size:18 final size:19
Alignment explanation
Indices: 119914189--119914234 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
119914179 TTATATAGCA
119914189 TTTAT-TAGATTTTTTACT
1 TTTATATAGATTTTTTACT
*
119914207 TTTATTATATATTTTTTACT
1 TTTA-TATAGATTTTTTACT
119914227 TATTATAT
1 T-TTATAT
119914235 TATTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.17
19 1 0.04
20 16 0.67
21 3 0.12
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATATAGATTTTTTACT
Found at i:119914222 original size:21 final size:19
Alignment explanation
Indices: 119914197--119914253 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
119914187 CATTTATTAG
119914197 ATTTTTTACTT-TTATTATAT
1 ATTTTTTACTTATTA-TAT-T
119914217 ATTTTTTACTTATTATATT
1 ATTTTTTACTTATTATATT
119914236 A-TTTTTA-TTA-TATATT
1 ATTTTTTACTTATTATATT
119914252 AT
1 AT
119914254 GTATATCGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.20
17 3 0.09
18 6 0.17
19 2 0.06
20 14 0.40
21 3 0.09
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTACTTATTATATT
Found at i:119914285 original size:16 final size:16
Alignment explanation
Indices: 119914214--119914298 Score: 56
Period size: 16 Copynumber: 5.6 Consensus size: 16
119914204 ACTTTTATTA
*
119914214 TATATTTTTTA-CTTAT
1 TATATTATTTATC-TAT
119914230 TATATTATTT-T-TAT
1 TATATTATTTATCTAT
*
119914244 TATA-TA-TTATGTA-
1 TATATTATTTATCTAT
**
119914257 TATCGTATATTATCTAT
1 TATATTAT-TTATCTAT
* *
119914274 TATATTATTTATGTTT
1 TATATTATTTATCTAT
119914290 TATATTATT
1 TATATTATT
119914299 CATTTTATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
12 2 0.04
13 6 0.11
14 11 0.20
16 30 0.55
17 6 0.11
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (16 bp):
TATATTATTTATCTAT
Found at i:119914313 original size:16 final size:17
Alignment explanation
Indices: 119914271--119914313 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
119914261 GTATATTATC
*
119914271 TATTATATTATTTATGT
1 TATTATATTATTCATGT
*
119914288 T-TTATATTATTCATTT
1 TATTATATTATTCATGT
119914304 TATTAT-TTAT
1 TATTATATTAT
119914314 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATATTATTCATGT
Found at i:119915951 original size:132 final size:132
Alignment explanation
Indices: 119915714--119917048 Score: 2175
Period size: 132 Copynumber: 10.1 Consensus size: 132
119915704 AAGAGAAACA
* *
119915714 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGGTAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
119915779 ACAGCGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119915844 GC
131 GC
* *
119915846 AGATTTGTCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
119915911 ATAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
119915976 GT
131 GC
* * * *
119915978 AAATTTGGCATCCCTGTGTTTATAGAGAACAGATCGAACATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
119916043 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119916108 GC
131 GC
* * * ** *
119916110 AGACTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTAACACAACTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
119916175 ACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119916240 GC
131 GC
* * * * *
119916242 AGATTTTGCATCCCTGTGTTTATAGGGAACAAATCGAATATAGCAGATCTGACATTCATGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
119916307 ACAACGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119916372 GC
131 GC
* *
119916374 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
119916439 ATAGCAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119916504 GC
131 GC
*
119916506 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
119916571 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
119916636 AC
131 GC
* * ** *
119916638 AGACTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACACAACTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
119916703 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTATTTATAGGAAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119916768 GC
131 GC
* * * *
119916770 AGATTTGGCATCCCTATGTTTATAGGGAACAAATCGAATATAGCAGATCTGACATTCCTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
119916835 ACAGCGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
119916900 GC
131 GC
* * * *
119916902 AGATTTGGCATCCTTGTGTTTATAGGGAATAAATCGAAGATAGCAGATCTGACATTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
119916967 ATAGCAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
119917032 GA
131 GC
119917034 AGATTTGGCATCCCT
1 AGATTTGGCATCCCT
119917049 AAAAATCAAA
Statistics
Matches: 1117, Mismatches: 86, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 1117 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:119917000 original size:88 final size:88
Alignment explanation
Indices: 119915722--119917048 Score: 889
Period size: 88 Copynumber: 15.1 Consensus size: 88
119915712 CAAGATTTGG
* * * * *
119915722 CATCCCTGTGTTTATAGGGAA-CAGATCGAAGGTAGCAG-ATCTGACA-CTCCTGTGCTTACAGC
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCA--TGGCATC-CCTGTGTTTATAGG
* * ** *
119915784 GAAGCAGATCAAAGATTTCAG--CATGG
63 GAA-CAAATCGAAGATAGCAGATC-TGA
* *
119915810 CATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGCAG-ATTTGTCATCCCTGTGTTTATAGG
1 CATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGCA--TGGCATCCCTGTGTTTATAGG
*
119915872 GAACAGATCGAAGATAGCAGATCTGA
63 GAACAAATCGAAGATAGCAGATCTGA
* * **
119915898 CA-CTCCTGTGCTTATAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGA
1 CATC-CCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCATGGCATCCCTGTGTTTATAGGGA
* * * * * *
119915962 ACAAGTTGAAGATAGTAAATTTGG
65 ACAAATCGAAGATAGCAGATCTGA
* * * * * *
119915986 CATCCCTGTGTTTATAGAGAA-CAGATCGAACATAGCAG-ATCTGACA-CTCCTGTGCTTACAGC
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCA--TGGCATC-CCTGTGTTTATAGG
* ** *
119916048 GAAGCAGATCGAAGATTTCAG--CATGG
63 GAA-CAAATCGAAGATAGCAGATC-TGA
* *
119916074 CATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGCAGACTTGGCATCCCTGTGTTTATAGGG
1 CATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAG-CATGGCATCCCTGTGTTTATAGGG
* *
119916137 AACAAATCGAAGATAGCAAATCTAA
64 AACAAATCGAAGATAGCAGATCTGA
* * * ** * **
119916162 CA-CAACTGTGATTACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGA
1 CATC-CCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCATGGCATCCCTGTGTTTATAGGGA
* * * *
119916226 ATAAGTTGAAGATAGCAGATTTTG-
65 ACAAATCGAAGATAGCAGA-TCTGA
* * * * * * * **
119916250 CATCCCTGTGTTTATAGGGAA-CAAATCGAATATAGCAG-ATCTGACATTCATGTGATTACAACG
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCA--TGGCATCCCTGTGTTTATAGGG
* **
119916313 AAGCAGATCGAAGATTTCAG--CATGA
64 AA-CAAATCGAAGATAGCAGATC-TGA
*
119916338 CATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGG
1 CATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGCA--TGGCATCCCTGTGTTTATAGG
119916400 GAACAAATCGAAGATAGCAGATCTGA
63 GAACAAATCGAAGATAGCAGATCTGA
* * * ** * **
119916426 CATTCCTATGCTTATAGCAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCATGGCATCCCTGTGTTTATAGGGAA
* * * *
119916491 CAAGTTGAAGATAGCAGATTTGG
66 CAAATCGAAGATAGCAGATCTGA
* * * *
119916514 CATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGACA-CTCCTGTGCTTACAGC
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCA--TGGCATC-CCTGTGTTTATAGG
* ** *
119916576 GAAGCAGATCGAAGATTTCAG--CATGG
63 GAA-CAAATCGAAGATAGCAGATC-TGA
* * *
119916602 CATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAACAGACTTGGCATCCCTGTGTTTATAGGG
1 CATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAG-CATGGCATCCCTGTGTTTATAGGG
*
119916665 AACAAATCGAAGATAGCAGATCTAA
64 AACAAATCGAAGATAGCAGATCTGA
* * * * ** * *
119916690 CA-CAACTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTATTTATAGGAA
1 CATC-CCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCATGGCATCCCTGTGTTTATAGGGA
* * * *
119916754 ACAAGTTGAAGATAGCAGATTTGG
65 ACAAATCGAAGATAGCAGATCTGA
* * * * * * * *
119916778 CATCCCTATGTTTATAGGGAA-CAAATCGAATATAGCAG-ATCTGACATTCCTGTGATTACAGCG
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCA--TGGCATCCCTGTGTTTATAGGG
* **
119916841 AAGCAGATCGAAGATTTCAG--CATGA
64 AA-CAAATCGAAGATAGCAGATC-TGA
* *
119916866 CATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGCAG-ATTTGGCATCCTTGTGTTTATAGG
1 CATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGCA--TGGCATCCCTGTGTTTATAGG
*
119916928 GAATAAATCGAAGATAGCAGATCTGA
63 GAACAAATCGAAGATAGCAGATCTGA
* * * ** * **
119916954 CATTCCTATGCTTATAGCAAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCATGGCATCCCTGTGTTTATAGGGAA
* * * * *
119917019 CAAGTTGAAGATAGAAGATTTGG
66 CAAATCGAAGATAGCAGATCTGA
119917042 CATCCCT
1 CATCCCT
119917049 AAAAATCAAA
Statistics
Matches: 958, Mismatches: 220, Indels: 122
0.74 0.17 0.09
Matches are distributed among these distances:
86 4 0.00
87 133 0.14
88 698 0.73
89 115 0.12
90 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (88 bp):
CATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGCATGGCATCCCTGTGTTTATAGGGAA
CAAATCGAAGATAGCAGATCTGA
Found at i:119917677 original size:19 final size:19
Alignment explanation
Indices: 119917653--119917750 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
119917643 AATCTTTAAG
119917653 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
119917672 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
119917691 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
119917708 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
119917727 AATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
119917748 GAT
1 GAT
119917751 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.66
21 8 0.11
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:119917683 original size:36 final size:35
Alignment explanation
Indices: 119917643--119917726 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 35
119917633 ATGGAAATAT
119917643 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
119917679 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
119917715 AATC-TTAGATAT
1 AATCTTTAGATAT
119917727 AATATGCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 36 0.80
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:119918124 original size:14 final size:14
Alignment explanation
Indices: 119918107--119918138 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
119918097 TTATATAGTT
119918107 TATTTTCAAATATA
1 TATTTTCAAATATA
*
119918121 TATTTTCATATATA
1 TATTTTCAAATATA
119918135 TATT
1 TATT
119918139 ATATTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTTTCAAATATA
Found at i:119919547 original size:47 final size:47
Alignment explanation
Indices: 119919494--119919586 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 47
119919484 ATGTCACACC
*
119919494 GATGCCATATCCCAGATATGGTCTTACAC-AAATGCACTTATCACTCT
1 GATGCCATATCCCAGATATGATCTTACACGAAAT-CACTTATCACTCT
* * * *
119919541 GATGCCATATTCTAGATATGATTTTACACGGAAATCACTTGTCACT
1 GATGCCATATCCCAGATATGATCTTACAC-GAAATCACTTATCACT
119919587 TGTAGCCGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 25 0.64
48 10 0.26
49 4 0.10
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGATCTTACACGAAATCACTTATCACTCT
Found at i:119919623 original size:31 final size:31
Alignment explanation
Indices: 119919588--119919705 Score: 218
Period size: 31 Copynumber: 3.8 Consensus size: 31
119919578 CTTGTCACTT
*
119919588 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119919619 GTAGCCGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
119919650 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
119919681 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
119919706 TGTCATTTGT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 84 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:119919799 original size:50 final size:51
Alignment explanation
Indices: 119919681--119919809 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
119919671 CACTGATCAG
* * *
119919681 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAAT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAAT
* * *
119919732 GTAGCCGCAGCTATCACTTATCACTT-TCACTTGTTCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAAT
*
119919782 GTAGCCGAAGCTGTCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
119919810 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 45 0.65
51 24 0.35
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAAT
Found at i:119924599 original size:19 final size:19
Alignment explanation
Indices: 119924565--119924625 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
119924555 CTGACTTGTT
119924565 TTGAAACAGTTTTAACTTGA
1 TTGAAACA-TTTTAACTTGA
**
119924585 TTGAAA-ATGTTTAACTCAA
1 TTGAAACAT-TTTAACTTGA
119924604 TTGAAACCATTTTAACTTGA
1 TTGAAA-CATTTTAACTTGA
119924624 TT
1 TT
119924626 TTATCATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 1 0.03
19 15 0.44
20 16 0.47
21 2 0.06
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (19 bp):
TTGAAACATTTTAACTTGA
Found at i:119924692 original size:24 final size:23
Alignment explanation
Indices: 119924655--119924699 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
119924645 GTTCAACTTT
119924655 AACTTTTATTCAAAA-ATATTTG
1 AACTTTTATTCAAAACATATTTG
119924677 AACTTGTTATATCAAAACATATT
1 AACTT-TTAT-TCAAAACATATT
119924700 ATCAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 4 0.20
24 6 0.30
25 5 0.25
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.42
Consensus pattern (23 bp):
AACTTTTATTCAAAACATATTTG
Found at i:119926805 original size:16 final size:15
Alignment explanation
Indices: 119926762--119926805 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
119926752 TATAAAAGAG
119926762 AATTTTAAAATAAAA
1 AATTTTAAAATAAAA
* *
119926777 AATTTATATAATAGAAC
1 AATTT-TAAAATA-AAA
119926794 AATTTTAAAATA
1 AATTTTAAAATA
119926806 TATATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 5 0.21
16 12 0.50
17 7 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
AATTTTAAAATAAAA
Found at i:119930265 original size:27 final size:27
Alignment explanation
Indices: 119930225--119930383 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
119930215 AGGAAGCGTC
*
119930225 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
119930252 CTGGTGACTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
119930278 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
119930306 CTGATGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
119930333 CTAGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
119930360 CTGGTGACTCCGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
119930384 GCTGCCTCGC
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 11 0.10
27 96 0.86
28 4 0.04
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:119930304 original size:54 final size:54
Alignment explanation
Indices: 119930222--119930383 Score: 238
Period size: 54 Copynumber: 3.0 Consensus size: 54
119930212 TGGAGGAAGC
119930222 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
* *
119930276 GTCCTGGTGGCTATGCCACAATTATCTGATCTGATGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
* * * * *
119930330 GTTCTAGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCT
119930383 G
1 G
119930384 GCTGCCTCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 13 0.13
54 85 0.87
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:119930377 original size:81 final size:80
Alignment explanation
Indices: 119930229--119930383 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 80
119930219 AGCGTCCTGG
* * *
119930229 TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTCCTGGTGGCTATGCCA
1 TGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTCCTGGTGACTACGCCA
119930294 CAATTATCTGATCTGA
66 CAA-TATCTGATCTGA
* * * * * *
119930310 TGGCTCTGCCAC-ATATATCTGTTCTAGTGGCTCTGCCACA-ATATCTGTATCTGGTGACTCCGT
1 TGGCTATGCCACAAT-TATCTGATCTAGTGACTCTGCCACATATATCTGT-CCTGGTGACTACGC
119930373 CACAATATCTG
64 CACAATATCTG
119930384 GCTGCCTCGC
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
80 16 0.25
81 47 0.75
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (80 bp):
TGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTCCTGGTGACTACGCCA
CAATATCTGATCTGA
Found at i:119932156 original size:40 final size:40
Alignment explanation
Indices: 119932112--119932334 Score: 344
Period size: 40 Copynumber: 5.6 Consensus size: 40
119932102 GCTACTCGCT
* *
119932112 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGT-AGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCA-CTAGCA
* *
119932152 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA
119932192 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
119932232 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
**
119932272 CAAATGCCTTCGGGACTTAGCCCAAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
119932312 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
119932335 CGTTATCATC
Statistics
Matches: 176, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
Found at i:119932233 original size:80 final size:79
Alignment explanation
Indices: 119932079--119932334 Score: 349
Period size: 80 Copynumber: 3.2 Consensus size: 79
119932069 AAACCAAGTA
* * * *
119932079 CCTTCGGGATTTA-ACCGAATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
* *
119932142 GT-AGTTCGCACAAATG
64 GTCA-CTAGCACAAATG
119932158 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
119932223 TCACTAGCACAAATG
65 TCACTAGCACAAATG
* **
119932238 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAAAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
119932302 GTCACTAGCACAAATG
64 GTCACTAGCACAAATG
119932318 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
119932335 CGTTATCATC
Statistics
Matches: 162, Mismatches: 10, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
79 14 0.09
80 145 0.90
81 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATG
Found at i:119932297 original size:22 final size:22
Alignment explanation
Indices: 119932267--119932332 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
119932257 AATTAGTCAC
119932267 TAGCACAAATGCCTTCGGGACT
1 TAGCACAAATGCCTTCGGGACT
* * * **
119932289 TAGCCCAAA---ATTAGTCAC-
1 TAGCACAAATGCCTTCGGGACT
119932307 TAGCACAAATGCCTTCGGGACT
1 TAGCACAAATGCCTTCGGGACT
119932329 TAGC
1 TAGC
119932333 CCCGTTATCA
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
21 5 0.17
22 12 0.40
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (22 bp):
TAGCACAAATGCCTTCGGGACT
Found at i:119934971 original size:14 final size:16
Alignment explanation
Indices: 119934945--119934978 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
119934935 AAATAAAAAT
119934945 ATAAAATATGACAA-A
1 ATAAAATATGACAATA
119934960 ATAAAA-ATGACAATA
1 ATAAAATATGACAATA
119934975 ATAA
1 ATAA
119934979 TGAAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (16 bp):
ATAAAATATGACAATA
Found at i:119935084 original size:3 final size:3
Alignment explanation
Indices: 119934971--119935071 Score: 51
Period size: 3 Copynumber: 33.3 Consensus size: 3
119934961 TAAAAATGAC
* * ** * *
119934971 AAT AAT AAT GAA- AAC AAC AAT AAT AAT AAT GCT AAT AGT AGT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * ***
119935016 AGT AAT AGT AAA AAGT AAT AAT AAT AAT AAT AGT AAT GGC AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
119935062 AGT AAT AAT A
1 AAT AAT AAT A
119935072 TGCTAAATAA
Statistics
Matches: 72, Mismatches: 23, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
2 2 0.03
3 66 0.92
4 4 0.06
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:119936855 original size:52 final size:47
Alignment explanation
Indices: 119936773--119936917 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 47
119936763 GTTTGTTTTG
* * *
119936773 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTATTTGTTCATAACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TATTTG--C-TAACTTCA
* * *
119936825 ATCTGCTCCAATGCAACTTCAGGGAAATAAG--ATTTGCTATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATATTTGCTAACTTCA
*
119936870 ATCTGCTCCACTGCAACTTCAGGGAGATAAG--ATTTG-TGACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATATTTGCTAACTTCA
119936914 ATCT
1 ATCT
119936918 ACTCTGCTGA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
44 10 0.12
45 41 0.49
46 1 0.01
48 5 0.06
52 26 0.31
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (47 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATATTTGCTAACTTCA
Found at i:119936875 original size:45 final size:44
Alignment explanation
Indices: 119936819--119936917 Score: 155
Period size: 45 Copynumber: 2.2 Consensus size: 44
119936809 TTTGTTCATA
119936819 ACTTCAATCTGCTCCAATGCAACTTCAGGGAAATAAGATTTGCT-
1 ACTTCAATCTGCTCCAATGCAACTTCAGGGAAATAAGATTTG-TG
* *
119936863 ATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTG
1 A-CTTCAATCTGCTCCAATGCAACTTCAGGGAAATAAGATTTGTG
119936908 ACTTCAATCT
1 ACTTCAATCT
119936918 ACTCTGCTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
44 11 0.22
45 40 0.78
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
ACTTCAATCTGCTCCAATGCAACTTCAGGGAAATAAGATTTGTG
Found at i:119936940 original size:44 final size:45
Alignment explanation
Indices: 119936820--119936941 Score: 122
Period size: 45 Copynumber: 2.7 Consensus size: 45
119936810 TTGTTCATAA
* * * * *
119936820 CTTCAATCTGCTCCAATGCAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTACTCCACTGAAAATTCAGGGAGATAAGATTTGCTAT
* * *
119936865 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TGA-
1 CTTCAATCTACTCCACTGAAAATTCAGGGAGATAAGATTTGCT-AT
** *
119936909 CTTCAATCTACTCTGCTGAAAATTCAAGGAGAT
1 CTTCAATCTACTCCACTGAAAATTCAGGGAGAT
119936942 TTGCTGTGGC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
44 28 0.41
45 40 0.59
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGAAAATTCAGGGAGATAAGATTTGCTAT
Found at i:119937034 original size:68 final size:68
Alignment explanation
Indices: 119936925--119937192 Score: 374
Period size: 68 Copynumber: 3.9 Consensus size: 68
119936915 TCTACTCTGC
* * * * *
119936925 TGAAAATTCAAGGAGATTTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTTAGGGAGAAGAGATC
1 TGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGATC
119936990 CGT
66 CGT
* * *
119936993 TGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCTGCTCCAACACCATTTTAGGGAGAAGAGATC
1 TGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGATC
***
119937058 TAC
66 CGT
* * * * * *
119937061 TGAAACTTCAAGGAGATTTGTTATGGCTTTTAGCCACTCCAACGCCATTTCAGGGAGAAGAGATC
1 TGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGATC
119937126 CGT
66 CGT
*
119937129 TGAAACTTCAAGGAGTTCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGAT
1 TGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGAT
119937193 TGGTAGCTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 172 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (68 bp):
TGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGATC
CGT
Found at i:119937095 original size:136 final size:136
Alignment explanation
Indices: 119936924--119937192 Score: 448
Period size: 136 Copynumber: 2.0 Consensus size: 136
119936914 ATCTACTCTG
* * * *
119936924 CTGAAAATTCAAGGAGATTTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTTAGGGAGAAGAGAT
1 CTGAAAATTCAAGGAGATTTGCTATGGCTTTTAGCCACTCCAACGCCATTTCAGGGAGAAGAGAT
* *
119936989 CCGTTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCTGCTCCAACACCATTTTAGGGAGAAGA
66 CCGTTGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACACCATTTTAGGGAGAAGA
119937054 GATCTA
131 GATCTA
* *
119937060 CTGAAACTTCAAGGAGATTTGTTATGGCTTTTAGCCACTCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAAATTCAAGGAGATTTGCTATGGCTTTTAGCCACTCCAACGCCATTTCAGGGAGAAGAGAT
* *
119937125 CCGTTGAAACTTCAAGGAGTTCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTTAGGGAGAAGA
66 CCGTTGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACACCATTTTAGGGAGAAGA
119937190 GAT
131 GAT
119937193 TGGTAGCTTC
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 123 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (136 bp):
CTGAAAATTCAAGGAGATTTGCTATGGCTTTTAGCCACTCCAACGCCATTTCAGGGAGAAGAGAT
CCGTTGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACACCATTTTAGGGAGAAGA
GATCTA
Found at i:119937336 original size:85 final size:85
Alignment explanation
Indices: 119937238--119937872 Score: 977
Period size: 85 Copynumber: 7.5 Consensus size: 85
119937228 GATAGCATGG
* * * * *
119937238 TAAATTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTAGATATGTTCCCCTA
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
*
119937303 CTACTTAGGGTGAAGATCTA
66 CTGCTTAGGGTGAAGATCTA
* * *
119937323 TAAATTCAGCCTGTTACCCTACTCCTTAGGGGTTTAAGGCCCATTGCCTTTGATCTG-TTCCCTT
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCC-T
119937387 ACTGCTTAGGGTGAAGATCTA
65 ACTGCTTAGGGTGAAGATCTA
* * *
119937408 TAAATTCGGCCAGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
*
119937473 CTGCTTAGGGTGAAGATCTG
66 CTGCTTAGGGTGAAGATCTA
*
119937493 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCAATCTGTTTCCCTA
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
*
119937558 TTGCTTAGGGTGAAGATCTA
66 CTGCTTAGGGTGAAGATCTA
* * *
119937578 TAAATTCAGCCTGTTACCCTATTACTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCTTA
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
* *
119937643 TTGCTTAGGGTGAAGATCTG
66 CTGCTTAGGGTGAAGATCTA
* *
119937663 TAAATTCAGCCTGCTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTATTTCCCTA
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
* *
119937728 CTGCTTAGGGTAAAGATCTG
66 CTGCTTAGGGTGAAGATCTA
* * *
119937748 TAAATTCGGCCTGTTACCTTACTGCTTAGGGGTTTAAGGCCCATCGCCTTTGATCTGTTTCCCTA
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
*
119937813 CTGCTTAGGGTGAGGATCTA
66 CTGCTTAGGGTGAAGATCTA
*
119937833 TAAATTCAGCCTGTTAACCTACTGCTTAGGGAG-TTAAGGC
1 TAAATTCAGCCTGTTACCCTACTGCTTAGGG-GTTTAAGGC
119937873 TTGTGAATTC
Statistics
Matches: 504, Mismatches: 43, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
84 4 0.01
85 494 0.98
86 6 0.01
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (85 bp):
TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTA
CTGCTTAGGGTGAAGATCTA
Done.