Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 364 of 373
Found at i:120521472 original size:15 final size:15
Alignment explanation
Indices: 120521454--120521497 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
120521444 AAAAGTTATT
120521454 TAATAATAAAAATTA
1 TAATAATAAAAATTA
*
120521469 TAATAATAATAATCTA
1 TAATAATAAAAAT-TA
*
120521485 TAAT-TTAAAAATT
1 TAATAATAAAAATT
120521498 TTTAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 1 0.04
15 18 0.72
16 6 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAATAAAAATTA
Found at i:120526172 original size:83 final size:83
Alignment explanation
Indices: 120526076--120526242 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
120526066 ACGAATAAGA
120526076 TAGTCTCAATCGCATTAATTATGTAGAAATGGTGGGGGGAAATGGACAATGGAATATGTAGGCAA
1 TAGTCTCAATCGCATTAATTATGTAGAAATGGTGGGGGGAAATGGACAATGGAATATGTAGGCAA
120526141 ACATAGAAAGAAGTGGAT
66 ACATAGAAAGAAGTGGAT
120526159 TAGTCTCAATCGCATTAATTATGTAGAAATGGTGGGGGGAAATGGACAATGGAATATGTAGGCAA
1 TAGTCTCAATCGCATTAATTATGTAGAAATGGTGGGGGGAAATGGACAATGGAATATGTAGGCAA
120526224 ACATAGAAAGAAGTGGAT
66 ACATAGAAAGAAGTGGAT
120526242 T
1 T
120526243 GCAGTCCCTC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.38, C:0.08, G:0.29, T:0.25
Consensus pattern (83 bp):
TAGTCTCAATCGCATTAATTATGTAGAAATGGTGGGGGGAAATGGACAATGGAATATGTAGGCAA
ACATAGAAAGAAGTGGAT
Found at i:120528358 original size:29 final size:29
Alignment explanation
Indices: 120528304--120528361 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
120528294 CAAGCACCCC
* *
120528304 TTTTGACTCTTAGTTTTACATAAAAAAAA
1 TTTTGACTCTTAATTGTACATAAAAAAAA
*
120528333 TTTTGACTCTTAAATTGTA-ATTAAAAAAA
1 TTTTGACTCTT-AATTGTACATAAAAAAAA
120528362 CTATAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (29 bp):
TTTTGACTCTTAATTGTACATAAAAAAAA
Found at i:120530010 original size:13 final size:13
Alignment explanation
Indices: 120529992--120530017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
120529982 GTTCGCACAT
120529992 TTTATAAATTTGA
1 TTTATAAATTTGA
120530005 TTTATAAATTTGA
1 TTTATAAATTTGA
120530018 AATTTCAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTATAAATTTGA
Found at i:120530926 original size:44 final size:44
Alignment explanation
Indices: 120530863--120530953 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
120530853 TATGATATGA
120530863 AAATAAATTTATGTATACATATCTTTAAATGTGTACAATTGAAC
1 AAATAAATTTATGTATACATATCTTTAAATGTGTACAATTGAAC
120530907 AAATAAATTTATGTATACATATCTTTAAATGTGTACAATTGAAC
1 AAATAAATTTATGTATACATATCTTTAAATGTGTACAATTGAAC
120530951 AAA
1 AAA
120530954 AATTAAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (44 bp):
AAATAAATTTATGTATACATATCTTTAAATGTGTACAATTGAAC
Found at i:120534155 original size:42 final size:42
Alignment explanation
Indices: 120534076--120534157 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
120534066 TCGTTTTCTC
** **
120534076 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAACTATGGTCTTACACATAATCACATAAT
* *
120534118 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATA
1 GATGCCATAGCCCAACTATGGTCTTACACATAATCACATA
120534158 TCACATATCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
GATGCCATAGCCCAACTATGGTCTTACACATAATCACATAAT
Found at i:120534193 original size:56 final size:55
Alignment explanation
Indices: 120534109--120534214 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 55
120534099 TTACACATCT
*
120534109 TCACATAATGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCACATAATGATGCCATAGCCCAACTATGGTCTTACACG-AATCACATATCACATA
120534165 TCACAT-ATCGATGCCATAGCCCAACTATGGTCTTACACGAATCACATATC
1 TCACATAAT-GATGCCATAGCCCAACTATGGTCTTACACGAATCACATATC
120534215 TCACTGATGC
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
55 13 0.27
56 35 0.73
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (55 bp):
TCACATAATGATGCCATAGCCCAACTATGGTCTTACACGAATCACATATCACATA
Found at i:120534351 original size:31 final size:31
Alignment explanation
Indices: 120534316--120534464 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
120534306 CTTGTCACTT
*
120534316 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
120534347 GTAGCCGGAGCTAGCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
120534378 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
120534409 GTAGTAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
120534440 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
120534465 TGTCATTTGT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:120536447 original size:16 final size:16
Alignment explanation
Indices: 120536426--120536456 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
120536416 ACTAAATTAA
120536426 TAATATTTCCTACTCG
1 TAATATTTCCTACTCG
120536442 TAATATTTCCTACTC
1 TAATATTTCCTACTC
120536457 ATTTGTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (16 bp):
TAATATTTCCTACTCG
Found at i:120538446 original size:4 final size:4
Alignment explanation
Indices: 120538437--120538482 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
120538427 AGGTAAAAAA
*
120538437 ATTT ATTT ATTT ATTT ATTT -TTT ATTT CTTGT ATTT -TTT ATATT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT-T ATTT ATTT AT-TT AT
120538483 ACGTTCATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
3 6 0.17
4 23 0.64
5 7 0.19
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:120539950 original size:104 final size:104
Alignment explanation
Indices: 120539715--120540084 Score: 602
Period size: 102 Copynumber: 3.6 Consensus size: 104
120539705 TGTATATAAA
** *
120539715 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
120539779 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
120539820 AGGGGTTGCTAAGTGTTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
120539885 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
120539924 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGGT--GTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
120539987 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** * *
120540026 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGTTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
120540085 ATAACGGTTA
Statistics
Matches: 250, Mismatches: 12, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
102 98 0.39
104 84 0.34
105 67 0.27
106 1 0.00
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:120547025 original size:27 final size:27
Alignment explanation
Indices: 120546983--120547034 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
120546973 AAATGTGAAA
*
120546983 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
120547010 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
120547035 GGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:120547086 original size:104 final size:104
Alignment explanation
Indices: 120546906--120547276 Score: 645
Period size: 104 Copynumber: 3.6 Consensus size: 104
120546896 TGTATATAAA
** *
120546906 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
120546970 TTGAAATGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
120547010 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
120547075 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
120547114 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
120547179 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
120547218 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
120547277 ATAACGGTTA
Statistics
Matches: 257, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
104 256 1.00
105 1 0.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:120550672 original size:9 final size:9
Alignment explanation
Indices: 120550658--120550683 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
120550648 AGCTTCCAAA
120550658 AGTTTAGCC
1 AGTTTAGCC
120550667 AGTTTAGCC
1 AGTTTAGCC
120550676 AGTTTAGC
1 AGTTTAGC
120550684 ATTTAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (9 bp):
AGTTTAGCC
Found at i:120554100 original size:31 final size:31
Alignment explanation
Indices: 120554062--120554126 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
120554052 TCTCTCTCTC
120554062 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
1 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
*
120554093 TCTCTCTCTTCACATTAGTTCACTCGTGGTT
1 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
120554124 TCT
1 TCT
120554127 ATGTGATGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.12, C:0.31, G:0.12, T:0.45
Consensus pattern (31 bp):
TCTCTCTCTTCACATTAGTTCACCCGTGGTT
Found at i:120559508 original size:22 final size:21
Alignment explanation
Indices: 120559479--120559522 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
120559469 GTCTGTTTCC
120559479 TTTTCTTTCTTTT-CTTTTTTT
1 TTTTCTTT-TTTTACTTTTTTT
120559500 TTTTACTTTTTTTACTTTTTTT
1 TTTT-CTTTTTTTACTTTTTTT
120559522 T
1 T
120559523 ATGTTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTCTTTTTTTACTTTTTTT
Found at i:120559509 original size:8 final size:9
Alignment explanation
Indices: 120559497--120559521 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
120559487 CTTTTCTTTT
120559497 TTTTTTTAC
1 TTTTTTTAC
120559506 TTTTTTTAC
1 TTTTTTTAC
120559515 TTTTTTT
1 TTTTTTT
120559522 TATGTTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:120559605 original size:31 final size:32
Alignment explanation
Indices: 120559554--120559616 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 32
120559544 TTTATTTATA
*
120559554 AAATTAAATCATAATTTAAAATATTATAAAAT
1 AAATTAAATAATAATTTAAAATATTATAAAAT
120559586 AAATTAAATAAT-ATTTAAAATATTATAAAAT
1 AAATTAAATAATAATTTAAAATATTATAAAAT
120559617 TAATAACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 19 0.63
32 11 0.37
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (32 bp):
AAATTAAATAATAATTTAAAATATTATAAAAT
Found at i:120559663 original size:18 final size:21
Alignment explanation
Indices: 120559649--120559708 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
120559639 AAATATTTAA
*
120559649 ATATTTTATATTATTAAAAAT
1 ATATTTAATATTATTAAAAAT
120559670 ATATTTAATATTA--AAAAAT
1 ATATTTAATATTATTAAAAAT
*
120559689 AATATTTAAAATT-TTAAAAA
1 -ATATTTAATATTATTAAAAA
120559709 ATAATTTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 6 0.18
20 11 0.32
21 17 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATTTAATATTATTAAAAAT
Found at i:120559671 original size:19 final size:18
Alignment explanation
Indices: 120559647--120559697 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
120559637 TAAAATATTT
120559647 AAATAT-TTTATATTATTAA
1 AAATATATTTA-A-TATTAA
120559666 AAATATATTTAATATTAAA
1 AAATATATTTAATATT-AA
120559685 AAATAATATTTAA
1 AAAT-ATATTTAA
120559698 AATTTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.14
19 13 0.45
20 12 0.41
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATTTAATATTAA
Found at i:120559705 original size:22 final size:22
Alignment explanation
Indices: 120559660--120559723 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
120559650 TATTTTATAT
120559660 TATT-AAAAAT-ATATTT--AA
1 TATTAAAAAATAATATTTAAAA
120559678 TATTAAAAAATAATATTTAAAA
1 TATTAAAAAATAATATTTAAAA
* *
120559700 TTTTAAAAAATAAT-TTCAAAA
1 TATTAAAAAATAATATTTAAAA
120559721 TAT
1 TAT
120559724 ATATTTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
18 4 0.10
19 6 0.15
20 6 0.15
21 8 0.21
22 15 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TATTAAAAAATAATATTTAAAA
Found at i:120559759 original size:19 final size:21
Alignment explanation
Indices: 120559717--120559763 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
120559707 AAATAATTTC
*
120559717 AAAATATATATTTAAAATATT
1 AAAATATATATATAAAATATT
*
120559738 AAAATATATATAT-ATATA-T
1 AAAATATATATATAAAATATT
120559757 AAAATAT
1 AAAATAT
120559764 TCTAAATTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.33
20 4 0.17
21 12 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATATATATATAAAATATT
Found at i:120559763 original size:92 final size:94
Alignment explanation
Indices: 120559591--120559760 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 94
120559581 AAAATAAATT
* * * *
120559591 AAATAATATTTAAAATATTATAAAATTAATAACAAATTTGAAAGTTTAAAATATTTAAATATTTT
1 AAATAATATTTAAAATATTATAAAAATAATAACAAATATGAAAGTTTAAAATATTAAAATATTAT
120559656 ATATTATTAAAAATATATTTAATATTAAA
66 ATATTATTAAAAATATATTTAATATTAAA
* ** *
120559685 AAATAATATTTAAAATTTTA-AAAAATAATTTCAAAATAT-ATA-TTTAAAATATTAAAATA-TA
1 AAATAATATTTAAAATATTATAAAAATAATAAC-AAATATGAAAGTTTAAAATATTAAAATATTA
120559746 TATATATATATAAAA
65 TATAT-TAT-TAAAA
120559761 TATTCTAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
91 6 0.09
92 19 0.29
93 16 0.25
94 24 0.37
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (94 bp):
AAATAATATTTAAAATATTATAAAAATAATAACAAATATGAAAGTTTAAAATATTAAAATATTAT
ATATTATTAAAAATATATTTAATATTAAA
Found at i:120559837 original size:9 final size:9
Alignment explanation
Indices: 120559782--120559820 Score: 53
Period size: 10 Copynumber: 4.2 Consensus size: 9
120559772 GTTTAAATTT
120559782 AATAATAATA
1 AATAA-AATA
120559792 AATAAAATA
1 AATAAAATA
120559801 AAT-AAATA
1 AATAAAATA
120559809 AATAAACATA
1 AATAAA-ATA
120559819 AA
1 AA
120559821 AAACAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.30
9 9 0.33
10 10 0.37
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (9 bp):
AATAAAATA
Found at i:120567013 original size:24 final size:23
Alignment explanation
Indices: 120566981--120567025 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
120566971 AAAAATTACG
*
120566981 TAAAAAAGGTTGTGTTAATTTTTT
1 TAAAAAAGG-TGTGGTAATTTTTT
120567005 TAAAAAAGGTGTGGTAATTTT
1 TAAAAAAGGTGTGGTAATTTT
120567026 ATTCATAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (23 bp):
TAAAAAAGGTGTGGTAATTTTTT
Found at i:120567953 original size:6 final size:6
Alignment explanation
Indices: 120567944--120567985 Score: 75
Period size: 6 Copynumber: 6.8 Consensus size: 6
120567934 TTATAAGTAT
120567944 AATTAC AATTAC AATTAC AATTAC AATTAC AATTACC AATTA
1 AATTAC AATTAC AATTAC AATTAC AATTAC AATTA-C AATTA
120567986 TTAGTTAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAC
Found at i:120574394 original size:31 final size:29
Alignment explanation
Indices: 120574339--120574405 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 29
120574329 CAATAGTGAA
* *
120574339 AATAGCAATAAAACAAAAATAATAATTAT
1 AATAGTAATAAAACAAAAATAATAATAAT
120574368 AATAGTAAGTAAAACAAATAATAATAATAAT
1 AATAGTAA-TAAAACAAA-AATAATAATAAT
120574399 AATAGTA
1 AATAGTA
120574406 GCAAATGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 7 0.21
30 9 0.26
31 18 0.53
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.25
Consensus pattern (29 bp):
AATAGTAATAAAACAAAAATAATAATAAT
Found at i:120574507 original size:20 final size:19
Alignment explanation
Indices: 120574484--120574525 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 19
120574474 AATAAAATGT
120574484 AATA-AAATAGTTTGAAATAA
1 AATAGAAATAG-TT-AAATAA
120574504 AATAGGAAATAGTTAAATAA
1 AATA-GAAATAGTTAAATAA
120574524 AA
1 AA
120574526 ATTAAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 12 0.60
21 2 0.10
22 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.26
Consensus pattern (19 bp):
AATAGAAATAGTTAAATAA
Found at i:120576090 original size:12 final size:12
Alignment explanation
Indices: 120576073--120576098 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
120576063 AAAATAGGGC
120576073 TTTAGCGGCGTT
1 TTTAGCGGCGTT
120576085 TTTAGCGGCGTT
1 TTTAGCGGCGTT
120576097 TT
1 TT
120576099 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:120576232 original size:41 final size:41
Alignment explanation
Indices: 120576153--120576372 Score: 361
Period size: 41 Copynumber: 5.4 Consensus size: 41
120576143 CGTTTTACCA
* *
120576153 AAAACGCCGCTAAAA-ACTGAGCAATAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
* *
120576193 AAAACGCCGCTAAAAGACAAAGCTTTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
120576234 AAAACGCCGCTAAAAGACAGAGCATTAGCGACGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
* *
120576275 AAAACGCCGCTAAAAGGCAGAGCAGTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
120576316 AAAATGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
120576357 AAAACGCCGCTAAAAG
1 AAAACGCCGCTAAAAG
120576373 TCATATAACT
Statistics
Matches: 165, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
40 15 0.09
41 150 0.91
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
Found at i:120577016 original size:24 final size:24
Alignment explanation
Indices: 120576989--120577037 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
120576979 CGTATATTTA
*
120576989 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
120577013 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
120577037 T
1 T
120577038 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:120577378 original size:7 final size:7
Alignment explanation
Indices: 120577319--120577471 Score: 67
Period size: 7 Copynumber: 21.6 Consensus size: 7
120577309 GAGTTACTAT
*
120577319 TTTAAGG
1 TTTATGG
120577326 TTTATGG
1 TTTATGG
*
120577333 ATTATGG
1 TTTATGG
*
120577340 ATTATGGG
1 TTTAT-GG
120577348 TTTATGG
1 TTTATGG
*
120577355 ATTATGG
1 TTTATGG
**
120577362 TTTACAG
1 TTTATGG
120577369 TTTATGG
1 TTTATGG
*
120577376 TTTAAGG
1 TTTATGG
* **
120577383 GTTGGGG
1 TTTATGG
*
120577390 TTTAAGG
1 TTTATGG
120577397 TTTA-GG
1 TTTATGG
*
120577403 TGTTAGGG
1 T-TTATGG
*
120577411 GTTATGG
1 TTTATGG
* *
120577418 GTTAGGG
1 TTTATGG
*
120577425 GTTATGG
1 TTTATGG
*
120577432 GTTATGG
1 TTTATGG
*
120577439 ATTTAAGG
1 -TTTATGG
*
120577447 GTTAT-G
1 TTTATGG
*
120577453 TTGTATGA
1 TT-TATGG
*
120577461 TTTAGGG
1 TTTATGG
120577468 TTTA
1 TTTA
120577472 GGGGATAAAA
Statistics
Matches: 112, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
6 5 0.04
7 92 0.82
8 15 0.13
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.44
Consensus pattern (7 bp):
TTTATGG
Found at i:120577392 original size:21 final size:21
Alignment explanation
Indices: 120577370--120577450 Score: 85
Period size: 21 Copynumber: 3.8 Consensus size: 21
120577360 GGTTTACAGT
120577370 TTATGGTTTAAGGGTT-GGGG
1 TTATGGTTTAAGGGTTAGGGG
*
120577390 TTTAAGGTTT-AGGTGTTAGGGG
1 -TTATGGTTTAAGG-GTTAGGGG
* * *
120577412 TTATGGGTTAGGGGTTATGGG
1 TTATGGTTTAAGGGTTAGGGG
120577433 TTATGGATTTAAGGGTTA
1 TTATGG-TTTAAGGGTTA
120577451 TGTTGTATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.06
21 31 0.63
22 15 0.31
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTAGGGG
Found at i:120577627 original size:15 final size:14
Alignment explanation
Indices: 120577593--120577645 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
120577583 GTTTGCAGGT
*
120577593 AAAATGTTTTCTGG
1 AAAATGATTTCTGG
*
120577607 AAAATGATTTCTTGA
1 AAAATGATTTC-TGG
*
120577622 AAAATGATTTATGG
1 AAAATGATTTCTGG
120577636 AAAATGATTT
1 AAAATGATTT
120577646 ACTTTTCTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.40
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:120577830 original size:13 final size:13
Alignment explanation
Indices: 120577790--120577840 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
120577780 TTGAGTTTAC
*
120577790 TTTATATA-TATA
1 TTTATATATTAAA
* *
120577802 TATATATTAATAAA
1 TTTATA-TATTAAA
*
120577816 TTTATATTTTAAA
1 TTTATATATTAAA
120577829 TTTATATATTAA
1 TTTATATATTAA
120577841 TAAAAATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
12 5 0.16
13 18 0.58
14 8 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTATATATTAAA
Found at i:120578246 original size:22 final size:21
Alignment explanation
Indices: 120578204--120578261 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
120578194 ATTTTTTAAA
*
120578204 AAAAATTATTTAAAATTAATAT
1 AAAAATTA-TAAAAATTAATAT
120578226 AAAAGA-TATAAAAATTCAATAT
1 AAAA-ATTATAAAAATT-AATAT
120578248 AAAAATTATAAAAA
1 AAAAATTATAAAAA
120578262 AGTCAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 8 0.25
22 23 0.72
23 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAATTATAAAAATTAATAT
Found at i:120578340 original size:38 final size:40
Alignment explanation
Indices: 120578272--120578380 Score: 168
Period size: 38 Copynumber: 2.8 Consensus size: 40
120578262 AGTCAAAAAT
*
120578272 TAGCGGCGTTTATGATAAAAACGCCCCAAAAGACAAGCAA
1 TAGCGGCGTTTATGATAAAAACGCCACAAAAGACAAGCAA
* * *
120578312 TAGCGGCGTTTAT-AT-AAAACGCCGCAAAAGGCAATCAA
1 TAGCGGCGTTTATGATAAAAACGCCACAAAAGACAAGCAA
120578350 TAGCGGCGTTTATGATAAAAACGCCACAAAA
1 TAGCGGCGTTTATGATAAAAACGCCACAAAA
120578381 AGTAATTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
38 33 0.52
39 4 0.06
40 26 0.41
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.17
Consensus pattern (40 bp):
TAGCGGCGTTTATGATAAAAACGCCACAAAAGACAAGCAA
Found at i:120578682 original size:34 final size:34
Alignment explanation
Indices: 120578601--120578683 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 34
120578591 TGACTAAGCC
* *
120578601 ATTTGCCTAAATCATAGTTCCCCTGAAACCCTCA
1 ATTTCCCTAAATCATAGTTCCCCTAAAACCCTCA
* *
120578635 TTTTCTCCCAAATCATAGTTCCCC-AAAACCC-CAAA
1 ATTTC-CCTAAATCATAGTTCCCCTAAAACCCTC--A
120578670 ATTTCCCTAAATCA
1 ATTTCCCTAAATCA
120578684 AACCCATTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
33 1 0.03
34 17 0.43
35 22 0.55
ACGTcount: A:0.33, C:0.34, G:0.05, T:0.29
Consensus pattern (34 bp):
ATTTCCCTAAATCATAGTTCCCCTAAAACCCTCA
Found at i:120581383 original size:241 final size:242
Alignment explanation
Indices: 120580954--120581389 Score: 847
Period size: 241 Copynumber: 1.8 Consensus size: 242
120580944 GTCTGAATTA
120580954 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
1 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
120581019 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
66 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
120581084 AGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
131 AGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
120581149 TCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAAT
196 TCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAAT
120581196 ATTTT-TTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
1 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
*
120581260 TTTTTTTAAATATTTTAAAGATTCAAGGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
66 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
*
120581325 AGCTGTAAGATATAATGGATCTTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
131 AGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
120581390 AACTTACATA
Statistics
Matches: 192, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
241 187 0.97
242 5 0.03
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (242 bp):
ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
AGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
TCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAAT
Found at i:120581402 original size:9 final size:9
Alignment explanation
Indices: 120581388--120581446 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
120581378 ATCTTAAAAA
120581388 ATAACTTAC
1 ATAACTTAC
*
120581397 ATAACTCAC
1 ATAACTTAC
120581406 ATAACTTAC
1 ATAACTTAC
*
120581415 ATAATTTAC
1 ATAACTTAC
*
120581424 ATAACTCAC
1 ATAACTTAC
*
120581433 ATAACGTAC
1 ATAACTTAC
120581442 ATAAC
1 ATAAC
120581447 AACTTACGGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:120581426 original size:27 final size:27
Alignment explanation
Indices: 120581388--120581446 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
120581378 ATCTTAAAAA
*
120581388 ATAACTTACATAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
120581415 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
120581442 ATAAC
1 ATAAC
120581447 AACTTACGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Found at i:120581542 original size:9 final size:9
Alignment explanation
Indices: 120581524--120581555 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
120581514 GTTCAAATTT
120581524 CATAACTTA
1 CATAACTTA
*
120581533 CATAATTTA
1 CATAACTTA
120581542 CATAACTTA
1 CATAACTTA
120581551 CATAA
1 CATAA
120581556 AACATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:120581547 original size:18 final size:17
Alignment explanation
Indices: 120581519--120581555 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
120581509 TTAAAGTTCA
120581519 AATTTCATAACTTACAT
1 AATTTCATAACTTACAT
120581536 AATTTACATAACTTACAT
1 AATTT-CATAACTTACAT
120581554 AA
1 AA
120581556 AACATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTTCATAACTTACAT
Found at i:120582270 original size:43 final size:43
Alignment explanation
Indices: 120582223--120582353 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
120582213 GTAATAAAAG
* ** * *
120582223 CGCCGCTAAAAGCCGTGACTTTTAGCGGCGTTTTTTCAATCAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTTTTCAATAAA
* * * *
120582266 CGCCGCTAAAAGTCAAGGCTTTCAGCGGTGCTTTTCCAATAAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTTTTCAATAAA
*
120582309 TGCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTTTTTCAATAAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCG-TTTTTTCAATAAA
120582353 C
1 C
120582354 ACCACAAGGT
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
43 61 0.85
44 11 0.15
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (43 bp):
CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTTTTCAATAAA
Found at i:120583953 original size:28 final size:27
Alignment explanation
Indices: 120583898--120583955 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
120583888 TGCCATTAAC
*
120583898 TTTGGGGTTAATAATAATTTTCATAAT
1 TTTGGGGTTAATAATAATTTTCAAAAT
120583925 TTTGGGGTTTAATTAA-AATGTTT-AAAAT
1 TTTGGGG-TTAA-TAATAAT-TTTCAAAAT
120583953 TTT
1 TTT
120583956 TAAGAGGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 7 0.26
28 14 0.52
29 6 0.22
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.50
Consensus pattern (27 bp):
TTTGGGGTTAATAATAATTTTCAAAAT
Found at i:120584256 original size:20 final size:20
Alignment explanation
Indices: 120584233--120584272 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
120584223 TTTCTCCTAT
*
120584233 ACTTTCAAAATTAAATTTTG
1 ACTTGCAAAATTAAATTTTG
* *
120584253 ACTTGCTAAATTAATTTTTG
1 ACTTGCAAAATTAAATTTTG
120584273 GTATAAAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (20 bp):
ACTTGCAAAATTAAATTTTG
Found at i:120584322 original size:19 final size:21
Alignment explanation
Indices: 120584282--120584323 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
120584272 GGTATAAAAG
120584282 AAATAATTTTACATATTAATA
1 AAATAATTTTACATATTAATA
*
120584303 AAAT-ATTTTATATA-TAATA
1 AAATAATTTTACATATTAATA
120584322 AA
1 AA
120584324 TTTTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 9 0.45
21 4 0.20
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
AAATAATTTTACATATTAATA
Found at i:120585882 original size:2 final size:2
Alignment explanation
Indices: 120585875--120585899 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120585865 ACTACTCATT
120585875 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
120585900 GGGGTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:120587232 original size:30 final size:27
Alignment explanation
Indices: 120587169--120587237 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 27
120587159 TATAATTAAA
* *
120587169 TTATCACTTTGGTATATGTACTTTTTT
1 TTATCAATTTGGTATATGTACTTTTTG
*
120587196 TTATCAATTTGGTATTTGTACTCTATTCTG
1 TTATCAATTTGGTATATGTACT-T-TT-TG
120587226 TTATCAATTTGG
1 TTATCAATTTGG
120587238 CCATTGTACT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.56
28 1 0.03
29 2 0.06
30 13 0.36
ACGTcount: A:0.20, C:0.12, G:0.13, T:0.55
Consensus pattern (27 bp):
TTATCAATTTGGTATATGTACTTTTTG
Found at i:120596468 original size:25 final size:25
Alignment explanation
Indices: 120596433--120596483 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
120596423 AATTAAACAA
120596433 ATATTAAATAAATAAAATATTATAT
1 ATATTAAATAAATAAAATATTATAT
* *
120596458 ATATTATATAAATAAAATATTTTAT
1 ATATTAAATAAATAAAATATTATAT
120596483 A
1 A
120596484 ATTTTAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
ATATTAAATAAATAAAATATTATAT
Found at i:120597557 original size:16 final size:16
Alignment explanation
Indices: 120597536--120597579 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
120597526 CCAGCAGCCC
*
120597536 TTTTAATTTTTTAAAA
1 TTTTAATTTTATAAAA
*
120597552 TTTTAATTTAATAAAA
1 TTTTAATTTTATAAAA
*
120597568 GTTTAATTTTAT
1 TTTTAATTTTAT
120597580 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TTTTAATTTTATAAAA
Found at i:120617455 original size:36 final size:37
Alignment explanation
Indices: 120617415--120617498 Score: 102
Period size: 36 Copynumber: 2.3 Consensus size: 37
120617405 ATACATATAA
*
120617415 ATATATATACT-TATAAAAATAA-AAATAT-GTATATGT
1 ATATATATA-TATATAAAAA-AAGAAATATAGTATACGT
*
120617451 ATATAGATATATATAAAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAAAGAAATAT-AGTATACGT
120617489 ATATATATAT
1 ATATATATAT
120617499 TAAACAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
35 3 0.07
36 22 0.54
38 16 0.39
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (37 bp):
ATATATATATATATAAAAAAAGAAATATAGTATACGT
Found at i:120617461 original size:38 final size:37
Alignment explanation
Indices: 120617426--120617498 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 37
120617416 TATATATACT
*
120617426 TATAAAAATAA-AAATAT-GTATATGTATATAGATATA
1 TATAAAAA-AAGAAATATAGTATACGTATATAGATATA
*
120617462 TATAAAAAAAGAAATATGAGTATACGTATATATATAT
1 TATAAAAAAAGAAATAT-AGTATACGTATATAGATAT
120617499 TAAACAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 2 0.06
36 14 0.44
38 16 0.50
ACGTcount: A:0.55, C:0.01, G:0.10, T:0.34
Consensus pattern (37 bp):
TATAAAAAAAGAAATATAGTATACGTATATAGATATA
Found at i:120617640 original size:3 final size:3
Alignment explanation
Indices: 120617629--120617701 Score: 110
Period size: 3 Copynumber: 24.3 Consensus size: 3
120617619 CAATAATACC
* * * *
120617629 AAT ACT AAT AAT AGT AAA AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
120617677 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
120617702 GCAAAAGTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:120618207 original size:12 final size:12
Alignment explanation
Indices: 120618190--120618217 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
120618180 AGCTTCAGTC
120618190 GCCGTCCGTCGT
1 GCCGTCCGTCGT
120618202 GCCGTCCGTCGT
1 GCCGTCCGTCGT
120618214 GCCG
1 GCCG
120618218 GCGTTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:120619173 original size:43 final size:44
Alignment explanation
Indices: 120619123--120619235 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
120619113 TAACCCACTA
* * * *
120619123 CACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTC
1 CACTGTAACTTCAGGGAGATAAGATCACTGGCTTCAATCTGCTC
* * *
120619166 CGCTGTAA-TCTCGGGGAGATAAGATCTCTGGCTTCAATCTGCTC
1 CACTGTAACT-TCAGGGAGATAAGATCACTGGCTTCAATCTGCTC
* *
120619210 CACTGTAACTTCAGGGGGACAAGATC
1 CACTGTAACTTCAGGGAGATAAGATC
120619236 TGTAATTTCC
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.02
43 20 0.36
44 34 0.61
45 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (44 bp):
CACTGTAACTTCAGGGAGATAAGATCACTGGCTTCAATCTGCTC
Found at i:120619476 original size:86 final size:87
Alignment explanation
Indices: 120619370--120619889 Score: 559
Period size: 88 Copynumber: 6.0 Consensus size: 87
120619360 AATCTGTAAC
* * * * *
120619370 CTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTA
1 CTTTAACCAGCTCC-ATACAACCGAAGGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCA
120619433 ATGCAGGAAGGCAAGATCTGCT-T
64 ATGCAGGAAGGCAAGATCTGCTGT
* * * * * * *
120619456 CTTTAACTAGCTCCACTGCAATCGATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTATTA
1 CTTTAACCAGCTCCA-TACAACCGAAGGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCA
** *
120619519 ATGTGGGAAGGTAAGATCTGCT-T
64 ATGCAGGAAGGCAAGATCTGCTGT
* *
120619542 CTTTAACCAGCTCCACTACAACCG-AGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCA
1 CTTTAACCAGCTCCA-TACAACCGAAG-GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCA
* **
120619606 ATGCAAGAAGGCAAGATCTTTTGT
64 ATGCAGGAAGGCAAGATCTGCTGT
* * *
120619630 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
1 CTTTAACCAGCTCCAT-ACAACCGAAGGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
**
120619695 TGCAGGAAGGCAAGATCTTTTGT
65 TGCAGGAAGGCAAGATCTGCTGT
* * * * *
120619718 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAA
1 CTTTAACCAGCTCCAT-ACAACCGAAGGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
**
120619783 TGCAGGAAGGCAAGATCTTTTGT
65 TGCAGGAAGGCAAGATCTGCTGT
* * * * * * *
120619806 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCCTCGACCTGCTTCACTATCAA
1 CTTTAACCAGCTCCAT-ACAACCGAAGGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
120619871 TGCAGGAAGGCAAGATCTG
65 TGCAGGAAGGCAAGATCTG
120619890 TAACTTCATT
Statistics
Matches: 392, Mismatches: 35, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
85 7 0.02
86 105 0.27
87 33 0.08
88 246 0.63
89 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (87 bp):
CTTTAACCAGCTCCATACAACCGAAGGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAT
GCAGGAAGGCAAGATCTGCTGT
Found at i:120619620 original size:44 final size:44
Alignment explanation
Indices: 120619570--120619884 Score: 207
Period size: 44 Copynumber: 7.2 Consensus size: 44
120619560 CAACCGAGAG
*
120619570 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAAGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTCTCAATGCAAGA
* * * * * * *
120619614 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTA-TCACAACCGAAAG-
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTC-ACTCTCAA-TGCAAGA
* * * *
120619658 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTCTCAATGCAAGA
* * * * * * *
120619702 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTA-TCACAACCGAAAG-
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTC-ACTCTCAA-TGCAAGA
* *
120619746 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTCTCAATGCAAGA
* * * * * * *
120619790 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTA-TCACAACCGAAAG-
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTC-ACTCTCAA-TGCAAGA
* * *
120619834 AGGCAAGGTTTGTGTCCTCGACCTGCTTCACTATCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTCTCAATGCAAGA
120619878 AGGCAAG
1 AGGCAAG
120619885 ATCTGTAACT
Statistics
Matches: 195, Mismatches: 58, Indels: 36
0.67 0.20 0.12
Matches are distributed among these distances:
43 51 0.26
44 91 0.47
45 53 0.27
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCACTCTCAATGCAAGA
Found at i:120619662 original size:88 final size:88
Alignment explanation
Indices: 120619524--120619888 Score: 608
Period size: 88 Copynumber: 4.2 Consensus size: 88
120619514 TATTAATGTG
* ** * * *
120619524 GGAAGGTAAGATCTGCT-TCTTTAACCAGCTCCA-CTACAACCGAGAGAGGCAAGGTTTGTGTCT
1 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATC-ACAACCGAAAGAGGCAAGGTTTGTGTCT
120619587 TCGACCTGCTTCACTGTCAATGCA
65 TCGACCTGCTTCACTGTCAATGCA
*
120619611 AGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
1 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
* *
120619676 CGATCTGCTTCGCTGTCAATGCA
66 CGACCTGCTTCACTGTCAATGCA
120619699 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
1 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
120619764 CGACCTGCTTCACTGTCAATGCA
66 CGACCTGCTTCACTGTCAATGCA
*
120619787 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCCT
1 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
*
120619852 CGACCTGCTTCACTATCAATGCA
66 CGACCTGCTTCACTGTCAATGCA
120619875 GGAAGGCAAGATCT
1 GGAAGGCAAGATCT
120619889 GTAACTTCAT
Statistics
Matches: 262, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
87 13 0.05
88 248 0.95
89 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (88 bp):
GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
CGACCTGCTTCACTGTCAATGCA
Found at i:120620448 original size:13 final size:13
Alignment explanation
Indices: 120620430--120620458 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
120620420 TTTATTTACA
120620430 TTGACACGACATC
1 TTGACACGACATC
120620443 TTGACACGACATC
1 TTGACACGACATC
120620456 TTG
1 TTG
120620459 TCCTTTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (13 bp):
TTGACACGACATC
Found at i:120622064 original size:7 final size:8
Alignment explanation
Indices: 120622040--120622068 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
120622030 CTATTTTGAC
120622040 TTTGATTT
1 TTTGATTT
120622048 TTTGATTT
1 TTTGATTT
120622056 TTTGATTT
1 TTTGATTT
120622064 TTTGA
1 TTTGA
120622069 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (8 bp):
TTTGATTT
Found at i:120624629 original size:19 final size:20
Alignment explanation
Indices: 120624600--120624648 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
120624590 CACTTCGTGA
* *
120624600 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
120624619 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
120624639 AAATG-AATGC
1 AAATGTAATGC
120624649 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:120627014 original size:37 final size:36
Alignment explanation
Indices: 120626956--120627027 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 36
120626946 TATATATACT
*
120626956 TATAAAAATAAAAATATGTATATGTATATAGATATA
1 TATAAAAATAAAAATATGTATACGTATATAGATATA
* *
120626992 TATAAAAA-AGAAATATGAGTATACGTATATATATAT
1 TATAAAAATAAAAATAT--GTATACGTATATAGATAT
120627028 TAAACAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 7 0.23
36 8 0.26
37 16 0.52
ACGTcount: A:0.54, C:0.01, G:0.10, T:0.35
Consensus pattern (36 bp):
TATAAAAATAAAAATATGTATACGTATATAGATATA
Found at i:120627169 original size:3 final size:3
Alignment explanation
Indices: 120627158--120627224 Score: 98
Period size: 3 Copynumber: 22.3 Consensus size: 3
120627148 CAATAATACC
* * * *
120627158 AAT ACT AAT AAT AGT AAA AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
120627206 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
120627225 GCAAAAGTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:120627730 original size:12 final size:12
Alignment explanation
Indices: 120627713--120627740 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
120627703 AGCTTCGGTC
120627713 GCCGTCCGTCGT
1 GCCGTCCGTCGT
120627725 GCCGTCCGTCGT
1 GCCGTCCGTCGT
120627737 GCCG
1 GCCG
120627741 GCGTTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:120635011 original size:21 final size:22
Alignment explanation
Indices: 120634982--120635028 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
120634972 CAGAAGGAGT
*
120634982 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
120635004 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
120635025 GAGT
1 GAGT
120635029 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:120637423 original size:7 final size:7
Alignment explanation
Indices: 120637413--120637457 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
120637403 ATTTTAAGGT
*
120637413 TTATAGA
1 TTATGGA
120637420 TTATGGAA
1 TTATGG-A
*
120637428 TTAGGGA
1 TTATGGA
120637435 TTATGGA
1 TTATGGA
120637442 TTATGGA
1 TTATGGA
*
120637449 TTAGGGA
1 TTATGGA
120637456 TT
1 TT
120637458 CTAGTTTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (7 bp):
TTATGGA
Found at i:120637438 original size:22 final size:21
Alignment explanation
Indices: 120637413--120637457 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
120637403 ATTTTAAGGT
120637413 TTATAGATTATGGAATTAGGGA
1 TTATAGATTATGG-ATTAGGGA
*
120637435 TTATGGATTATGGATTAGGGA
1 TTATAGATTATGGATTAGGGA
120637456 TT
1 TT
120637458 CTAGTTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (21 bp):
TTATAGATTATGGATTAGGGA
Found at i:120637708 original size:7 final size:7
Alignment explanation
Indices: 120637698--120637727 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
120637688 TAGTAGTTAA
120637698 GGGTTTG
1 GGGTTTG
120637705 GGGTTTG
1 GGGTTTG
120637712 GGGTTTG
1 GGGTTTG
120637719 GGGTTTG
1 GGGTTTG
120637726 GG
1 GG
120637728 ATTAGATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.60, T:0.40
Consensus pattern (7 bp):
GGGTTTG
Found at i:120640798 original size:14 final size:14
Alignment explanation
Indices: 120640779--120640812 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
120640769 GATACAATGT
120640779 GTTTCTTGTTGAAA
1 GTTTCTTGTTGAAA
120640793 GTTTCTTGTTGAAA
1 GTTTCTTGTTGAAA
120640807 GTTTCT
1 GTTTCT
120640813 GAACTAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTTCTTGTTGAAA
Found at i:120641161 original size:24 final size:22
Alignment explanation
Indices: 120641133--120641176 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
120641123 AATTTAAAAA
120641133 ATAAAACATAATATAATATTTATC
1 ATAAAA-ATAA-ATAATATTTATC
*
120641157 ATAAAAATAAATATTATTTA
1 ATAAAAATAAATAATATTTA
120641177 ATTAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAAAATAAATAATATTTATC
Found at i:120641255 original size:43 final size:43
Alignment explanation
Indices: 120641207--120641411 Score: 180
Period size: 43 Copynumber: 4.8 Consensus size: 43
120641197 AGGTTATATT
* * *
120641207 TTTAGCGGCGTTTTTTGCAAAAACGTCGCTAAAGGTCATAGTC
1 TTTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGGTCATAGTC
* * * * *
120641250 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGGTCATAGTC
* * * *
120641293 TTTAGCGGCATTTGTGAG-AGAAGCGCCGCTAAAGGTC-TTGATC
1 TTTAGCGGCGTTTGTG-GCAAAAACGCCGCTAAAGGTCATAG-TC
* * * * * * *
120641336 TTTAGCAGCGTTTGTGGTAGAAGCGCCGCTAAAGTTCTTGGTC
1 TTTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGGTCATAGTC
* * *
120641379 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAA
1 TTTAGCGGCGTTTGTGGCAAAAACGCCGCTAAA
120641412 AGCCTGTTTT
Statistics
Matches: 140, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
42 3 0.02
43 134 0.96
44 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGGTCATAGTC
Found at i:120641352 original size:86 final size:86
Alignment explanation
Indices: 120641233--120641411 Score: 288
Period size: 86 Copynumber: 2.1 Consensus size: 86
120641223 GCAAAAACGT
120641233 CGCTAAAGGTCATAGTCTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
1 CGCTAAAGGTCATAGTCTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
120641298 CGGCATTTGTGAGAGAAGCGC
66 CGGCATTTGTGAGAGAAGCGC
* * * *
120641319 CGCTAAAGGTC-TTGATCTTTAGCAGCGTTTGTGGTAGAAGCGCCGCTAAAGTTCTTGGTCTTTA
1 CGCTAAAGGTCATAG-TCTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTA
* *
120641383 GCGGCGTTTGTGGGAGAAGCGC
65 GCGGCATTTGTGAGAGAAGCGC
120641405 CGCTAAA
1 CGCTAAA
120641412 AGCCTGTTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
85 2 0.02
86 84 0.98
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (86 bp):
CGCTAAAGGTCATAGTCTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
CGGCATTTGTGAGAGAAGCGC
Found at i:120643135 original size:20 final size:20
Alignment explanation
Indices: 120643090--120643128 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
120643080 ATAAAACAAA
120643090 AGAATAATGAAAATGATACT
1 AGAATAATGAAAATGATACT
*
120643110 AGAATACTGAAAATGATAC
1 AGAATAATGAAAATGATAC
120643129 CTTAATAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (20 bp):
AGAATAATGAAAATGATACT
Found at i:120645233 original size:50 final size:51
Alignment explanation
Indices: 120645153--120645282 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 51
120645143 GGACCATGGC
120645153 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
1 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
* * *
120645204 GA-AAGTGATAAGTGATAGCTTCGGTTACACTTATCTGATCAATGACAAAT
1 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
* * * *
120645254 AACAAGTGAAAAGTGGTAGCCTCGACTAC
1 AACAAGTGATAAGTGATAGCTTCGGCTAC
120645283 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 47 0.68
51 22 0.32
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (51 bp):
AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
Found at i:120645296 original size:31 final size:30
Alignment explanation
Indices: 120645258--120645437 Score: 243
Period size: 31 Copynumber: 5.8 Consensus size: 30
120645248 ACAAATAACA
*
120645258 AGTGAAAAGTGGTAGCCTCGACTACCTGATC
1 AGTGAAAAGTGGTAG-CTCGGCTACCTGATC
*
120645289 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGC-TCGGCTACCTGATC
* *
120645320 AGTGAAAAGTGGTAGCTCCAGCTACGTGATC
1 AGTGAAAAGTGGTAGCT-CGGCTACCTGATC
*
120645351 AGTGAAAAGTGGAAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CGGCTACCTGATC
*
120645382 AGTGAAAAATGGTAGCTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTC-GGCTACCTGATC
*
120645413 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGC-TCGGCTAC
120645438 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
30 3 0.02
31 129 0.96
32 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (30 bp):
AGTGAAAAGTGGTAGCTCGGCTACCTGATC
Found at i:120645437 original size:93 final size:93
Alignment explanation
Indices: 120645258--120645429 Score: 276
Period size: 93 Copynumber: 1.8 Consensus size: 93
120645248 ACAAATAACA
* *
120645258 AGTGAAAAGTGGTAGCCTCGACTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGT
1 AGTGAAAAGTGGAAGCCTCGACTACCTGATCAGTGAAAAATGGTAGCTTCTGCTACCTGATCAGT
120645323 GAAAAGTGGTAGCTCCAGCTACGTGATC
66 GAAAAGTGGTAGCTCCAGCTACGTGATC
*
120645351 AGTGAAAAGTGGAAG-CTCCGGCTACCTGATCAGTGAAAAATGGTAGC-TCTGGCTACCTGATCA
1 AGTGAAAAGTGGAAGCCT-CGACTACCTGATCAGTGAAAAATGGTAGCTTCT-GCTACCTGATCA
*
120645414 GTGAATAGTGGTAGCT
64 GTGAAAAGTGGTAGCT
120645430 TCGGCTACAA
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 5 0.07
93 68 0.93
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (93 bp):
AGTGAAAAGTGGAAGCCTCGACTACCTGATCAGTGAAAAATGGTAGCTTCTGCTACCTGATCAGT
GAAAAGTGGTAGCTCCAGCTACGTGATC
Found at i:120645560 original size:49 final size:47
Alignment explanation
Indices: 120645459--120645617 Score: 188
Period size: 49 Copynumber: 3.5 Consensus size: 47
120645449 GATTTCCGTA
** * * *
120645459 TAAGACCATATTTGGGATATGGCATCA-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCGTG
120645505 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATT-CGTG
*
120645554 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATTCGTG
120645596 TAAGACCATAGCTGGGCTATGG
1 TAAGACCATAGCTGGGCTATGG
120645618 TGTAACACCC
Statistics
Matches: 103, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
42 25 0.24
44 1 0.01
45 1 0.01
46 24 0.23
47 1 0.01
48 14 0.14
49 37 0.36
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCGTG
Found at i:120646437 original size:46 final size:46
Alignment explanation
Indices: 120646367--120646594 Score: 359
Period size: 46 Copynumber: 5.0 Consensus size: 46
120646357 TTTGACACGA
* * * * *
120646367 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
120646413 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
120646459 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
120646505 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
120646551 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAG
120646595 AGAGCACACT
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 167 0.98
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:120648687 original size:8 final size:8
Alignment explanation
Indices: 120648674--120648698 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
120648664 ATATATATTA
120648674 AATAAAAT
1 AATAAAAT
120648682 AATAAAAT
1 AATAAAAT
120648690 AATAAAAT
1 AATAAAAT
120648698 A
1 A
120648699 TCATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:120649024 original size:30 final size:30
Alignment explanation
Indices: 120648957--120649024 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
120648947 TACCCTTAAA
* * *
120648957 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
120648987 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
120649016 AGTATTTAC
1 A-TATTTAC
120649025 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:120649925 original size:23 final size:23
Alignment explanation
Indices: 120649895--120649945 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
120649885 ATGATATTTC
120649895 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
120649918 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
120649941 AAATA
1 AAATA
120649946 TGAAATAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (23 bp):
AAATACTTTGGTGAATAAAGCTT
Found at i:120650192 original size:23 final size:23
Alignment explanation
Indices: 120650103--120650199 Score: 92
Period size: 23 Copynumber: 4.3 Consensus size: 23
120650093 ATACATTAAT
*
120650103 AATAATAAT-ATATGTTAATAAC
1 AATAATAATAATATGTTAATAAA
*
120650125 AATAATAATAATATG-TAAAAAA
1 AATAATAATAATATGTTAATAAA
** *** *
120650147 AAGGGA-AATAATAACATAGTAAA
1 AA-TAATAATAATATGTTAATAAA
120650170 AATAATAATAATATGTTAATAAA
1 AATAATAATAATATGTTAATAAA
120650193 AATAATA
1 AATAATA
120650200 GTAGCAGTAA
Statistics
Matches: 57, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
22 24 0.42
23 33 0.58
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (23 bp):
AATAATAATAATATGTTAATAAA
Found at i:120650250 original size:21 final size:21
Alignment explanation
Indices: 120650166--120650271 Score: 86
Period size: 21 Copynumber: 4.7 Consensus size: 21
120650156 AATAACATAG
* *
120650166 TAAAAATAATAATAATATGTTAA
1 TAAAAATAATAGTAATA--ATAA
120650189 TAAAAATAATAGTAGCAGTAATAA
1 TAAAAATAATAGTA--A-TAATAA
* * *
120650213 TAGAAAGGTAATGGTAATAAAAA
1 TA-AAA-ATAATAGTAATAATAA
*
120650236 TAAAAATAATAGTAATAATGA
1 TAAAAATAATAGTAATAATAA
*
120650257 TAATAATAATAGTAA
1 TAAAAATAATAGTAA
120650272 CAGAAAAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
21 26 0.38
22 3 0.04
23 20 0.29
24 6 0.09
25 4 0.06
26 9 0.13
ACGTcount: A:0.59, C:0.01, G:0.11, T:0.28
Consensus pattern (21 bp):
TAAAAATAATAGTAATAATAA
Found at i:120650308 original size:3 final size:3
Alignment explanation
Indices: 120650300--120650442 Score: 109
Period size: 3 Copynumber: 48.3 Consensus size: 3
120650290 ACGATAAAAG
* * *
120650300 TAA TAA TAA TAA TAA TTA TAA TAG TAA TAA T-A TAA -AA TTAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
* ** * *
120650344 T-A TAA TAA T-G TAA TAA TAA TAA TAA TGC TGA CAA TAGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * *
120650388 TAA TGAA -AG TAG TGGA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
120650433 TAA TAA TAA T
1 TAA TAA TAA T
120650443 GGCAAAATAG
Statistics
Matches: 113, Mismatches: 17, Indels: 20
0.75 0.11 0.13
Matches are distributed among these distances:
2 9 0.08
3 97 0.86
4 7 0.06
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:120654083 original size:18 final size:18
Alignment explanation
Indices: 120654060--120654095 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
120654050 CTTCTTACAT
120654060 ATATTG-AAATCTATAAAA
1 ATATTGAAAAT-TATAAAA
120654078 ATATTGAAAATTATAAAA
1 ATATTGAAAATTATAAAA
120654096 TAAATAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (18 bp):
ATATTGAAAATTATAAAA
Found at i:120656388 original size:24 final size:24
Alignment explanation
Indices: 120656356--120656403 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
120656346 CAATATTTAC
*
120656356 TTTTCAAATTTAAAATAAATTATT
1 TTTTCAAATCTAAAATAAATTATT
* *
120656380 TTTTTAAATCTATAATAAATTATT
1 TTTTCAAATCTAAAATAAATTATT
120656404 GAATTTCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTCAAATCTAAAATAAATTATT
Found at i:120658049 original size:6 final size:6
Alignment explanation
Indices: 120658035--120658068 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
120658025 TTTTCTTCTT
*
120658035 CTTCTC CTTCCC CTTCCC CTTCCC CTTCCC CTTC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC
120658069 AGGCTCTCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
CTTCCC
Found at i:120664358 original size:11 final size:11
Alignment explanation
Indices: 120664344--120664384 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
120664334 TTTTTAATTG
120664344 TTTTGTTATTA
1 TTTTGTTATTA
*
120664355 TTTTGTTATTG
1 TTTTGTTATTA
* *
120664366 TTTTCTCATTA
1 TTTTGTTATTA
120664377 TTTTGTTA
1 TTTTGTTA
120664385 CCATTTCATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.15, C:0.05, G:0.10, T:0.71
Consensus pattern (11 bp):
TTTTGTTATTA
Found at i:120664358 original size:22 final size:22
Alignment explanation
Indices: 120664340--120664384 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
120664330 GTTTTTTTTA
* *
120664340 ATTGTTTTGTTATTATTTTGTT
1 ATTGTTTTCTCATTATTTTGTT
120664362 ATTGTTTTCTCATTATTTTGTT
1 ATTGTTTTCTCATTATTTTGTT
120664384 A
1 A
120664385 CCATTTCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.04, G:0.11, T:0.69
Consensus pattern (22 bp):
ATTGTTTTCTCATTATTTTGTT
Found at i:120664806 original size:19 final size:17
Alignment explanation
Indices: 120664782--120664820 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
120664772 TTCTTATATG
120664782 AAATATAAATTAATATTTT
1 AAATAT-AATTAAT-TTTT
*
120664801 AAATATATTTAATTTTT
1 AAATATAATTAATTTTT
120664818 AAA
1 AAA
120664821 AACAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATATAATTAATTTTT
Found at i:120665736 original size:20 final size:22
Alignment explanation
Indices: 120665688--120665736 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
120665678 TTATTGTTTG
120665688 ATATAATCACATAAAATTATAT
1 ATATAATCACATAAAATTATAT
*
120665710 ATAATAAT-ACATAATATTATA-
1 AT-ATAATCACATAAAATTATAT
120665731 ATATAA
1 ATATAA
120665737 ATATTAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 2 0.08
22 14 0.56
23 5 0.20
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATAATCACATAAAATTATAT
Found at i:120683733 original size:16 final size:16
Alignment explanation
Indices: 120683712--120683742 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120683702 CTTGATGGAT
120683712 TAAAGTACAAAAAATC
1 TAAAGTACAAAAAATC
*
120683728 TAAAGTATAAAAAAT
1 TAAAGTACAAAAAAT
120683743 AAAAAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (16 bp):
TAAAGTACAAAAAATC
Found at i:120689072 original size:4 final size:4
Alignment explanation
Indices: 120689058--120689131 Score: 51
Period size: 4 Copynumber: 17.0 Consensus size: 4
120689048 ACCCTTACCA
* * *
120689058 AATT AATTT AATT AATT AATTT AATT AATT AACT GATT AACTG AATT AATT
1 AATT AA-TT AATT AATT AA-TT AATT AATT AATT AATT AA-TT AATT AATT
120689109 CAATT CAATCT -ATT AAATT AATT
1 -AATT -AAT-T AATT -AATT AATT
120689132 TTACTCGAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
3 1 0.02
4 33 0.58
5 22 0.39
6 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (4 bp):
AATT
Found at i:120689072 original size:9 final size:8
Alignment explanation
Indices: 120689058--120689131 Score: 51
Period size: 9 Copynumber: 8.5 Consensus size: 8
120689048 ACCCTTACCA
120689058 AATTAATTT
1 AATTAA-TT
120689067 AATTAATT
1 AATTAATT
120689075 AATTTAATT
1 AA-TTAATT
*
120689084 AATTAACT
1 AATTAATT
* *
120689092 GATTAACTG
1 AATTAA-TT
120689101 AATTAATT
1 AATTAATT
120689109 CAATTCAATCT
1 -AATT-AAT-T
120689120 -ATTAAATT
1 AATT-AATT
120689128 AATT
1 AATT
120689132 TTACTCGAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
8 16 0.31
9 32 0.62
10 3 0.06
11 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (8 bp):
AATTAATT
Found at i:120689076 original size:13 final size:13
Alignment explanation
Indices: 120689058--120689089 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
120689048 ACCCTTACCA
120689058 AATTAATTTAATT
1 AATTAATTTAATT
120689071 AATTAATTTAATT
1 AATTAATTTAATT
120689084 AATTAA
1 AATTAA
120689090 CTGATTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTAATTTAATT
Found at i:120690090 original size:26 final size:24
Alignment explanation
Indices: 120690053--120690104 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
120690043 CCGTTTTCTA
120690053 CTGATGATAATGATTTTTCTTTCTTC
1 CTGATGATAATGATTTTT-TTT-TTC
*
120690079 CTGAGTGA-AATGCTTTTTTTTTTC
1 CTGA-TGATAATGATTTTTTTTTTC
120690103 CT
1 CT
120690105 TTTACTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.21
25 3 0.12
26 13 0.54
27 3 0.12
ACGTcount: A:0.17, C:0.15, G:0.13, T:0.54
Consensus pattern (24 bp):
CTGATGATAATGATTTTTTTTTTC
Found at i:120691247 original size:5 final size:5
Alignment explanation
Indices: 120691234--120691265 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
120691224 GTGGACAAAT
*
120691234 AGAAC AGAAA AGAAA AGAAA AGAAA AGAAA AG
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AG
120691266 GGATGCGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.75, C:0.03, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:120693689 original size:23 final size:23
Alignment explanation
Indices: 120693659--120693705 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
120693649 TATGTTTAAC
120693659 ATGAAAACCCCTTTAGCCCAAAG
1 ATGAAAACCCCTTTAGCCCAAAG
*
120693682 ATGAAAACCCCTTTGGCCCAAAG
1 ATGAAAACCCCTTTAGCCCAAAG
120693705 A
1 A
120693706 CAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.30, G:0.15, T:0.17
Consensus pattern (23 bp):
ATGAAAACCCCTTTAGCCCAAAG
Found at i:120698434 original size:24 final size:25
Alignment explanation
Indices: 120698407--120698458 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
120698397 ATGTATGAAT
120698407 TATAAAATATAT-AAAATATGTACA
1 TATAAAATATATAAAAATATGTACA
* * *
120698431 TAT-ATATATGTAAAAATATGTATA
1 TATAAAATATATAAAAATATGTACA
120698455 TATA
1 TATA
120698459 TATTTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (25 bp):
TATAAAATATATAAAAATATGTACA
Found at i:120698468 original size:24 final size:24
Alignment explanation
Indices: 120698413--120698468 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
120698403 GAATTATAAA
120698413 ATATAT-AAAATATGTACATATAT
1 ATATATAAAAATATGTACATATAT
* *
120698436 ATATGTAAAAATATGTATATATAT
1 ATATATAAAAATATGTACATATAT
*
120698460 ATTTATAAA
1 ATATATAAA
120698469 GGTTAGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (24 bp):
ATATATAAAAATATGTACATATAT
Found at i:120698651 original size:17 final size:17
Alignment explanation
Indices: 120698625--120698657 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
120698615 AAGCAATTAT
*
120698625 AATAATAATAATAATGC
1 AATAACAATAATAATGC
120698642 AATAACAATAATAATG
1 AATAACAATAATAATG
120698658 TAAAATTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (17 bp):
AATAACAATAATAATGC
Found at i:120701637 original size:61 final size:61
Alignment explanation
Indices: 120701542--120701663 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
120701532 GTTAGACACT
120701542 AGTTTTAACACGGTTTCAAACCCTAATGTTAGATAGAATCTATTGTGATGAAAAAAAGAAA
1 AGTTTTAACACGGTTTCAAACCCTAATGTTAGATAGAATCTATTGTGATGAAAAAAAGAAA
*
120701603 AGTTTTAACACGGTTTCAAACGCTAATGTTAGATAGAATCTATTGTGATGAAAAAAAGAAA
1 AGTTTTAACACGGTTTCAAACCCTAATGTTAGATAGAATCTATTGTGATGAAAAAAAGAAA
120701664 CTACCTACCT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.30
Consensus pattern (61 bp):
AGTTTTAACACGGTTTCAAACCCTAATGTTAGATAGAATCTATTGTGATGAAAAAAAGAAA
Found at i:120702696 original size:24 final size:24
Alignment explanation
Indices: 120702669--120702720 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
120702659 TTAGTAAGTC
*
120702669 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
120702693 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
120702717 AAAT
1 AAAT
120702721 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:120704661 original size:24 final size:24
Alignment explanation
Indices: 120704634--120704685 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
120704624 TTAGTAAGTC
*
120704634 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
120704658 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
120704682 AAAT
1 AAAT
120704686 CTTCTAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:120710948 original size:15 final size:16
Alignment explanation
Indices: 120710920--120710949 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
120710910 ACAAAAGCTT
120710920 CATTTTATATTTTATA
1 CATTTTATATTTTATA
120710936 CATTTTA-ATTTTAT
1 CATTTTATATTTTAT
120710950 TATGCACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (16 bp):
CATTTTATATTTTATA
Found at i:120711671 original size:18 final size:19
Alignment explanation
Indices: 120711648--120711686 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
120711638 TTGTTTCATA
120711648 TTTTCTTTCCTT-GATTTT
1 TTTTCTTTCCTTAGATTTT
*
120711666 TTTTCTTTCTTTAGATTTT
1 TTTTCTTTCCTTAGATTTT
120711685 TT
1 TT
120711687 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTCTTTCCTTAGATTTT
Found at i:120726583 original size:24 final size:24
Alignment explanation
Indices: 120726556--120726607 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
120726546 TTAGTAAGTC
*
120726556 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
120726580 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
120726604 AAAT
1 AAAT
120726608 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:120728549 original size:24 final size:24
Alignment explanation
Indices: 120728522--120728573 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
120728512 TTAGTAAGTC
*
120728522 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
120728546 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
120728570 AAAT
1 AAAT
120728574 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:120734888 original size:15 final size:16
Alignment explanation
Indices: 120734860--120734889 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
120734850 ACAAAAGCTT
120734860 CATTTTATATTTTATA
1 CATTTTATATTTTATA
120734876 CATTTTA-ATTTTAT
1 CATTTTATATTTTAT
120734890 TATGCACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (16 bp):
CATTTTATATTTTATA
Found at i:120735642 original size:18 final size:19
Alignment explanation
Indices: 120735619--120735658 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
120735609 TGTTTTCATA
120735619 TTTTCTTTCCTT-GATTTT
1 TTTTCTTTCCTTAGATTTT
*
120735637 TTTTCTTTCTTTAGATTTT
1 TTTTCTTTCCTTAGATTTT
120735656 TTT
1 TTT
120735659 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.07, C:0.12, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTTCTTTCCTTAGATTTT
Found at i:120739821 original size:29 final size:27
Alignment explanation
Indices: 120739788--120739849 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 27
120739778 TTAAACATAA
120739788 TTAAAATTATTATATTTATTATTTAT--TT
1 TTAAAATTATT-TA--TATTATTTATAATT
* *
120739816 TTTAAAGTATTTATATTATTTATAATT
1 TTAAAATTATTTATATTATTTATAATT
120739843 TTAAAAT
1 TTAAAAT
120739850 ATGATATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
25 10 0.36
27 9 0.32
28 9 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
TTAAAATTATTTATATTATTTATAATT
Found at i:120743823 original size:31 final size:31
Alignment explanation
Indices: 120743756--120743823 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
120743746 TATGAAAAAA
* *
120743756 AAAATCAAATAACTAATTAAATATTAATACT
1 AAAATTAAATAACAAATTAAATATTAATACT
* * *
120743787 AAAATTAAATACCAAATTATATATTAATCCT
1 AAAATTAAATAACAAATTAAATATTAATACT
120743818 AAAATT
1 AAAATT
120743824 TATTATTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATTAAATAACAAATTAAATATTAATACT
Found at i:120745957 original size:36 final size:36
Alignment explanation
Indices: 120745889--120745957 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
120745879 GTAGCAAAAT
** *
120745889 TAATAATAAAATAAGAGTTATACAATACCAAAACAA
1 TAATAATAAAATAAGAGCAATACAATAACAAAACAA
*
120745925 TAATAATAAAAT-AGTAGCAATATAATAACAAAA
1 TAATAATAAAATAAG-AGCAATACAATAACAAAA
120745958 TCCCAACAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 2 0.07
36 26 0.93
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.23
Consensus pattern (36 bp):
TAATAATAAAATAAGAGCAATACAATAACAAAACAA
Found at i:120748281 original size:31 final size:31
Alignment explanation
Indices: 120748240--120748304 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
120748230 ATTATAACCC
* *
120748240 AATGATTTAAATAAAAACTTTTGAAGAATTT
1 AATGACTTAAATAAAAACTTTTAAAGAATTT
* * *
120748271 AATGACTTAAATGAAAATTTTTAAATAATTT
1 AATGACTTAAATAAAAACTTTTAAAGAATTT
120748302 AAT
1 AAT
120748305 AATTATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (31 bp):
AATGACTTAAATAAAAACTTTTAAAGAATTT
Found at i:120762337 original size:23 final size:24
Alignment explanation
Indices: 120762292--120762338 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
120762282 TGTTCGCTTA
120762292 ATGTTCACAAACATATAAATGAAC
1 ATGTTCACAAACATATAAATGAAC
120762316 ATGTTCACAAACAT-TAAATGAAC
1 ATGTTCACAAACATATAAATGAAC
120762339 CAAGCCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.26
Consensus pattern (24 bp):
ATGTTCACAAACATATAAATGAAC
Found at i:120763493 original size:102 final size:102
Alignment explanation
Indices: 120763317--120763522 Score: 385
Period size: 102 Copynumber: 2.0 Consensus size: 102
120763307 TAGGCCAATG
*
120763317 AAGCATGTCATATATGAAAAATAGAAAGCAGGCTCGTAAAATTCCGGAAATATGATAGTTGTAGT
1 AAGCATGTCATATATGAAAAATAGAAAGCAGACTCGTAAAATTCCGGAAATATGATAGTTGTAGT
120763382 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
66 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
* *
120763419 AAGCATGTCATATATGAAAAATAGAAAGGAGACTCGTTAAATTCCGGAAATATGATAGTTGTAGT
1 AAGCATGTCATATATGAAAAATAGAAAGCAGACTCGTAAAATTCCGGAAATATGATAGTTGTAGT
120763484 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
66 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
120763521 AA
1 AA
120763523 CAAAAAAAAA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (102 bp):
AAGCATGTCATATATGAAAAATAGAAAGCAGACTCGTAAAATTCCGGAAATATGATAGTTGTAGT
GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
Found at i:120765572 original size:59 final size:58
Alignment explanation
Indices: 120765490--120765601 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 58
120765480 CTTTTTCATT
120765490 TTAAAAGTTTATATAAAAATTAAATGATTATTTTATTAAAATGATAGAATTAAATGTCTA
1 TTAAAAGTTTATATAAAAATTAAATGATT-TTTTATT-AAATGATAGAATTAAATGTCTA
* * *
120765550 TTAAAATTTTAT-TAAAAATTAAATGATTTTTTATTAAATGGTATAATTAAAT
1 TTAAAAGTTTATATAAAAATTAAATGATTTTTTATTAAATGATAGAATTAAAT
120765602 CTAAAAAATG
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 15 0.31
58 7 0.14
59 16 0.33
60 11 0.22
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.45
Consensus pattern (58 bp):
TTAAAAGTTTATATAAAAATTAAATGATTTTTTATTAAATGATAGAATTAAATGTCTA
Found at i:120768114 original size:20 final size:20
Alignment explanation
Indices: 120768091--120768130 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
120768081 AAAAAGATAC
120768091 AGAAATAACATTAAATAATT
1 AGAAATAACATTAAATAATT
*
120768111 AGAATTAACATTAAATAATT
1 AGAAATAACATTAAATAATT
120768131 GTAAGGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
AGAAATAACATTAAATAATT
Found at i:120768251 original size:31 final size:31
Alignment explanation
Indices: 120768211--120768269 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
120768201 ATCTTGCAAA
*
120768211 CAAAATTAAGTATTAAATTAAATATTAAAGT
1 CAAAATTAAGTATTAAATGAAATATTAAAGT
* *
120768242 CAAATTTAAGTATTAAATGATATATTAA
1 CAAAATTAAGTATTAAATGAAATATTAA
120768270 CCCTTCTGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (31 bp):
CAAAATTAAGTATTAAATGAAATATTAAAGT
Done.