Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 367 of 373
Found at i:121343119 original size:39 final size:39
Alignment explanation
Indices: 121343014--121343121 Score: 126
Period size: 39 Copynumber: 2.8 Consensus size: 39
121343004 CGAAATCTAG
* * *
121343014 CTGAAGCACATAAGTGCTAAACGGCAGCCCGAAGGCTAA
1 CTGAAGCACATAAGAGCTAAACGGAAACCCGAAGGCTAA
* *
121343053 CTGAAGCACATAAGTGCTAAACGGAAACCCGGAGGCTAA
1 CTGAAGCACATAAGAGCTAAACGGAAACCCGAAGGCTAA
* * * * *
121343092 CTGAAGCTCATCAGAGTTGAACTGAAACCC
1 CTGAAGCACATAAGAGCTAAACGGAAACCC
121343122 CAAAAGGGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 60 1.00
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (39 bp):
CTGAAGCACATAAGAGCTAAACGGAAACCCGAAGGCTAA
Found at i:121346305 original size:32 final size:32
Alignment explanation
Indices: 121346264--121346330 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
121346254 TGACATTAAT
121346264 TTTAAATATCATTATCAACCTACAATTTAGCC
1 TTTAAATATCATTATCAACCTACAATTTAGCC
121346296 TTTAAATATCATTATCAACCTACAATTTAGCC
1 TTTAAATATCATTATCAACCTACAATTTAGCC
121346328 TTT
1 TTT
121346331 CTTATTTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.40
Consensus pattern (32 bp):
TTTAAATATCATTATCAACCTACAATTTAGCC
Found at i:121346725 original size:30 final size:30
Alignment explanation
Indices: 121346689--121346751 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
121346679 ACTTATTTTA
*
121346689 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTAGTTTAAAGACAT
* *
121346719 TTGTTAATTTTGTTATTAGTTTAGAGGCAT
1 TTGTTAATTTTGTTATTAGTTTAAAGACAT
121346749 TTG
1 TTG
121346752 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.03, G:0.16, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAGTTTAAAGACAT
Found at i:121351595 original size:13 final size:13
Alignment explanation
Indices: 121351579--121351618 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
121351569 TTTAAACCAA
*
121351579 ACTTTTCAAAATC
1 ACTTTTCAAAAGC
121351592 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
121351605 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
121351618 A
1 A
121351619 TTGCCAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:121352021 original size:6 final size:6
Alignment explanation
Indices: 121352010--121352034 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
121352000 TAAAATAACT
121352010 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
121352035 AGTAAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:121352708 original size:59 final size:59
Alignment explanation
Indices: 121352376--121352697 Score: 261
Period size: 57 Copynumber: 5.6 Consensus size: 59
121352366 GGATAAGAAA
* * * * * * * *
121352376 AAGTTCAAGGACTAATTTGG--ATAAAAAGGTTCAAACCCTAATGTAGGAACAATTGTC
1 AAGTTCAAAGACTAACTTGGACAAAAAAAAGTTCAAGCCCCAATGTGGGAACAATTGCC
* * * * *
121352433 AAGTTCGAGGACTAACTT-GA-AAAAAAAAGTTTAGGCCCCAATGTAGGAACAATTGCC
1 AAGTTCAAAGACTAACTTGGACAAAAAAAAGTTCAAGCCCCAATGTGGGAACAATTGCC
* * * * * * *
121352490 AAGTTC-ATGAATTAA-TT-TA-AAAATAAAGTTCAAG-CCCGATGCGGGAACAATTGCT
1 AAGTTCAAAG-ACTAACTTGGACAAAAAAAAGTTCAAGCCCCAATGTGGGAACAATTGCC
* * * * * **
121352545 AAGTTCAGAGACTAACTTGGAC-AAAAAATGTCCAGGTCCCAATGTGGGAACAATTGTT
1 AAGTTCAAAGACTAACTTGGACAAAAAAAAGTTCAAGCCCCAATGTGGGAACAATTGCC
* * *
121352603 AAGTTCAAAGATTAATTTGGACAAAAAAAAGTTGAAGCCCCAATGTGGGAACAATTGCC
1 AAGTTCAAAGACTAACTTGGACAAAAAAAAGTTCAAGCCCCAATGTGGGAACAATTGCC
* *
121352662 AAGTTTAAGGACTAACTTGGACAAAATAAAA-TTCAA
1 AAGTTCAAAGACTAACTTGGACAAAA-AAAAGTTCAA
121352698 CCTTCAATGT
Statistics
Matches: 211, Mismatches: 45, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
55 27 0.13
56 21 0.10
57 67 0.32
58 37 0.18
59 55 0.26
60 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (59 bp):
AAGTTCAAAGACTAACTTGGACAAAAAAAAGTTCAAGCCCCAATGTGGGAACAATTGCC
Found at i:121359435 original size:21 final size:22
Alignment explanation
Indices: 121359405--121359445 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
121359395 TTTATTTTAC
*
121359405 TTTAGTTATAATATAATAATAT
1 TTTAGTTATAATAAAATAATAT
121359427 TTTA-TTATAATAAAATAAT
1 TTTAGTTATAATAAAATAAT
121359446 TATATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTTAGTTATAATAAAATAATAT
Found at i:121360941 original size:15 final size:15
Alignment explanation
Indices: 121360921--121360951 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
121360911 CATTAGCCAA
121360921 TCAAAGTTTGTCAGC
1 TCAAAGTTTGTCAGC
121360936 TCAAAGTTTGTCAGC
1 TCAAAGTTTGTCAGC
121360951 T
1 T
121360952 TAAAATCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (15 bp):
TCAAAGTTTGTCAGC
Found at i:121380497 original size:18 final size:19
Alignment explanation
Indices: 121380458--121380510 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
121380448 TATCACTAGT
121380458 TTTACAAATTAAATACACTA
1 TTTA-AAATTAAATACACTA
*
121380478 -TTAAAATTGAAATAGA-TA
1 TTTAAAATT-AAATACACTA
121380496 TTTAAAATATAAATA
1 TTTAAAAT-TAAATA
121380511 ATGTTACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 7 0.24
19 21 0.72
20 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.36
Consensus pattern (19 bp):
TTTAAAATTAAATACACTA
Found at i:121381267 original size:181 final size:177
Alignment explanation
Indices: 121381021--121381362 Score: 485
Period size: 181 Copynumber: 1.9 Consensus size: 177
121381011 TTTTAAATTA
* * *
121381021 GAAATGTTATTTTTTAGAGGATTATTATGAACCTTAAAAATATTAGTATTTTATAGACAGTAAAA
1 GAAATGTCATTTTTTAGAGGATAATCATGAACCTTAAAAATATTAG-ATTTTATAGACAGTAAAA
* *
121381086 TAAACATTAAGGAAACTTTGTTCAT-AAAAAAATATACACATTTTTAAACAATTTT-CAAATTAA
65 TAAACATTAA-G-AACCTTGGTCATAAAAAAAATATACAC-TTTTTAAAC-ATTTTCCAAATTAA
*
121381149 GAATTCTTAATCCAAAACTCAATTAACAATACTCACATGTAAAAAATAAACAC
126 G-ATTCTTAATCCAAAACCCAATTAACAATACTCACATGTAAAAAATAAACAC
*
121381202 GAAATGTCATTTTTTAGAGGGATAATCATGAA-CTTCAAAAATATTA-ATCTTTATAGACCGTAA
1 GAAATGTCATTTTTTAGA-GGATAATCATGAACCTT-AAAAATATTAGAT-TTTATAGACAGTAA
* *
121381265 AATAAACATTAAGAACCTTGGTCATAAAAAAAATATACGCTTTTTAAACATTTTCCACATTAAGA
63 AATAAACATTAAGAACCTTGGTCATAAAAAAAATATACACTTTTTAAACATTTTCCAAATTAAGA
*
121381330 TTTTTAATCCAAAACCCAATTAACAATACTCAC
128 TTCTTAATCCAAAACCCAATTAACAATACTCAC
121381363 GATAAAAGAT
Statistics
Matches: 146, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
178 37 0.25
179 27 0.18
180 16 0.11
181 45 0.31
182 21 0.14
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (177 bp):
GAAATGTCATTTTTTAGAGGATAATCATGAACCTTAAAAATATTAGATTTTATAGACAGTAAAAT
AAACATTAAGAACCTTGGTCATAAAAAAAATATACACTTTTTAAACATTTTCCAAATTAAGATTC
TTAATCCAAAACCCAATTAACAATACTCACATGTAAAAAATAAACAC
Found at i:121393889 original size:18 final size:19
Alignment explanation
Indices: 121393850--121393902 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
121393840 TATCACTAGT
121393850 TTTACAAATTAAATACACTA
1 TTTA-AAATTAAATACACTA
*
121393870 -TTAAAATTGAAATAGA-TA
1 TTTAAAATT-AAATACACTA
121393888 TTTAAAATATAAATA
1 TTTAAAAT-TAAATA
121393903 ATGTTACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 7 0.24
19 21 0.72
20 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.36
Consensus pattern (19 bp):
TTTAAAATTAAATACACTA
Found at i:121394734 original size:183 final size:181
Alignment explanation
Indices: 121394421--121394921 Score: 595
Period size: 183 Copynumber: 2.7 Consensus size: 181
121394411 TTTTAAATTA
* * *
121394421 GAAATGTTATTTTTTAGAGGGATTATTATGAACCTT-AAAAATATTAGTAT-TTTATAGACAGTA
1 GAAATGTCATTTTTTAGAGGGATAATCATGAA-CTTCAAAAATATTA--ATCTTTATAGACAGTA
* *
121394484 AAATAAACATTAAGGAAACTTTGTTCATAAAAAAATATACACATTTTTAAACAATTTT-CAAATT
63 AAATAAACATTAAGGAAACCTTGGTCATAAAAAAATATACAC-TTTTTAAAC-ATTTTCCAAATT
*
121394548 AAGAATTCTTAATCCAAAACTCAAATTAACAATACTCAC-ATGTAAAAAATA-AACAC
126 AAGAATTCTTAATCCAAAACCCAAATTAACAATACTCACGA-GTAAAAAATATAAC-C
*
121394604 GAAATGTCATTTTTTTAGAGGGATAATCATGAACTTCAAAAATATTAATCTTTATAGACCGTAAA
1 GAAATGTCA-TTTTTTAGAGGGATAATCATGAACTTCAAAAATATTAATCTTTATAGACAGTAAA
* * *
121394669 ATAAACATTAAGGAAGCCTTGGTCATAAAAAAAATATACGCTTTTTAAACATTTTCCACATTAAG
65 ATAAACATTAAGGAAACCTTGGTCAT-AAAAAAATATACACTTTTTAAACATTTTCCAAATTAAG
* * * * *
121394734 AATTTTTAATCCAAAACCCGAATTAACAATACTCACGAGTAAAAGATATGACT
129 AATTCTTAATCCAAAACCCAAATTAACAATACTCACGAGTAAAAAATATAACC
* * * *
121394787 GAAAATGTCATTTTTT-GAGAGATAATCATGAA-TCTCAAAAATATTAGTCTTCATAGACTGTAA
1 G-AAATGTCATTTTTTAGAGGGATAATCATGAACT-TCAAAAATATTAATCTTTATAGACAGTAA
* * * * * * *
121394850 AATGAATATTAA-GAAATCTTGGTCATTAGAAAAATATACATTTTTTAAATATTTTCAAAATTAA
64 AATAAACATTAAGGAAACCTTGGTCA-TAAAAAAATATACACTTTTTAAACATTTTCCAAATTAA
*
121394914 GAAATCTT
128 GAATTCTT
121394922 GATATTACCC
Statistics
Matches: 277, Mismatches: 31, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
181 49 0.18
182 59 0.21
183 114 0.41
184 55 0.20
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (181 bp):
GAAATGTCATTTTTTAGAGGGATAATCATGAACTTCAAAAATATTAATCTTTATAGACAGTAAAA
TAAACATTAAGGAAACCTTGGTCATAAAAAAATATACACTTTTTAAACATTTTCCAAATTAAGAA
TTCTTAATCCAAAACCCAAATTAACAATACTCACGAGTAAAAAATATAACC
Found at i:121399729 original size:17 final size:18
Alignment explanation
Indices: 121399709--121399744 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
121399699 TAAGTCCTTT
121399709 TAAAATTTA-AAAAAAAA
1 TAAAATTTATAAAAAAAA
121399726 TAAAATTTATAAAAAAAA
1 TAAAATTTATAAAAAAAA
121399744 T
1 T
121399745 TCATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAATTTATAAAAAAAA
Found at i:121399745 original size:13 final size:13
Alignment explanation
Indices: 121399722--121399755 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
121399712 AATTTAAAAA
*
121399722 AAAATAAAATTTAT
1 AAAA-AAAATTCAT
121399736 AAAAAAAATTCAT
1 AAAAAAAATTCAT
121399749 AAAAAAA
1 AAAAAAA
121399756 GTTATATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAAAAATTCAT
Found at i:121403545 original size:51 final size:51
Alignment explanation
Indices: 121403423--121403546 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 51
121403413 TTTAGCCCTC
*
121403423 AAATTCTACACATTTTGTCAAATTGATCCTAAATTTAACAAATTTAACTGCA
1 AAATT-TACACATTTTGTCAACTTGATCCTAAATTTAACAAATTTAACTGCA
* * * * * **
121403475 ACATCTAAATATTTCGTCAACTTGAT-CTTGATTTAACAAATTTAACTTGCA
1 AAATTTACACATTTTGTCAACTTGATCCTAAATTTAACAAATTTAAC-TGCA
121403526 AAATTTACACATTTTGTCAAC
1 AAATTTACACATTTTGTCAAC
121403547 ATTTACACAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
50 18 0.31
51 37 0.64
52 3 0.05
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (51 bp):
AAATTTACACATTTTGTCAACTTGATCCTAAATTTAACAAATTTAACTGCA
Found at i:121406500 original size:54 final size:54
Alignment explanation
Indices: 121406418--121406522 Score: 174
Period size: 54 Copynumber: 1.9 Consensus size: 54
121406408 CCTGTTGAGA
* *
121406418 ATTCAGATCACTGTGTTCACCCTGCTGAGTTTCAGTGTGAACAGTAGTACCCTC
1 ATTCAGATCACTGTATTCACCCTGCTGAGTTTCAGTGTGAACAGTAATACCCTC
**
121406472 ATTCAGATCACTGTATTCACCCTGCTGAGTTTTGGTGTGAACAGTAATACC
1 ATTCAGATCACTGTATTCACCCTGCTGAGTTTCAGTGTGAACAGTAATACC
121406523 AACAGACTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (54 bp):
ATTCAGATCACTGTATTCACCCTGCTGAGTTTCAGTGTGAACAGTAATACCCTC
Found at i:121414680 original size:18 final size:19
Alignment explanation
Indices: 121414647--121414682 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
121414637 TTCTCCAAAT
121414647 TATTTTAGGTATTATTTAA
1 TATTTTAGGTATTATTTAA
121414666 TATTTTAGG-ATTATTTA
1 TATTTTAGGTATTATTTA
121414683 TATAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (19 bp):
TATTTTAGGTATTATTTAA
Found at i:121425374 original size:92 final size:92
Alignment explanation
Indices: 121425249--121425432 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
121425239 GAATTTGATA
121425249 AGACTAAAAGAAAAGGATGATTATAAAGGAAGAAGAATAATATTAAAGACTGCAAAAAATTGAGA
1 AGACTAAAAGAAAAGGATGATTATAAAGGAAGAAGAATAATATTAAAGACTGCAAAAAATTGAGA
121425314 TGCTATAATTCCATCTTGAAATTCTTT
66 TGCTATAATTCCATCTTGAAATTCTTT
*
121425341 AGACTACAAGAAAAGGATGATTATAAAGGAAGAAGAATAATATTAAAGACTGCAAAAAATTGAGA
1 AGACTAAAAGAAAAGGATGATTATAAAGGAAGAAGAATAATATTAAAGACTGCAAAAAATTGAGA
121425406 TGCTATAATTCCATCTTGAAATTCTTT
66 TGCTATAATTCCATCTTGAAATTCTTT
121425433 CTCTAAATCC
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.27
Consensus pattern (92 bp):
AGACTAAAAGAAAAGGATGATTATAAAGGAAGAAGAATAATATTAAAGACTGCAAAAAATTGAGA
TGCTATAATTCCATCTTGAAATTCTTT
Found at i:121426188 original size:27 final size:27
Alignment explanation
Indices: 121426150--121426203 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
121426140 ATCTAAATGG
*
121426150 GTAAACTTGCCAGTCGGAAAGCGGACT
1 GTAAACTTGCCAGTCGGAAAGCAGACT
121426177 GTAAACTTGCCAGTCGGAAAGCAGACT
1 GTAAACTTGCCAGTCGGAAAGCAGACT
121426204 TTCTCATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (27 bp):
GTAAACTTGCCAGTCGGAAAGCAGACT
Found at i:121440039 original size:23 final size:23
Alignment explanation
Indices: 121440007--121440086 Score: 83
Period size: 23 Copynumber: 3.4 Consensus size: 23
121439997 CTTACCGATA
121440007 TATCAGCTCGTAAGAGCTTACTGT
1 TATCAGCTCGTAA-AGCTTACTGT
*
121440031 T-TCAGCTCGTTAAAGCTTACTAT
1 TATCAGCTCG-TAAAGCTTACTGT
* *
121440054 T-TTAGCTCAATAAAGCTTACTGT
1 TATCAGCTC-GTAAAGCTTACTGT
121440077 TCATCAGCTC
1 T-ATCAGCTC
121440087 AATAGGAGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
23 37 0.79
24 4 0.09
25 6 0.13
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (23 bp):
TATCAGCTCGTAAAGCTTACTGT
Found at i:121450842 original size:25 final size:25
Alignment explanation
Indices: 121450813--121450863 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
121450803 CAAAGGAAAA
**
121450813 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
121450838 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
121450863 T
1 T
121450864 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:121455515 original size:25 final size:25
Alignment explanation
Indices: 121455486--121455536 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
121455476 CAAAAGAAAA
**
121455486 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
121455511 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
121455536 T
1 T
121455537 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:121459367 original size:36 final size:36
Alignment explanation
Indices: 121459320--121459500 Score: 220
Period size: 36 Copynumber: 5.0 Consensus size: 36
121459310 ACCTGGTGGG
* * *
121459320 GGAGGAGGCACAGCAGGAGCTTTTGGTGCAGGGGGT
1 GGAGGGGGCACAGCAGGACCTTTTGGTGGAGGGGGT
* *
121459356 GGAGGAGGCACAGCAGGACCTTTTGGTGGAGGAGGT
1 GGAGGGGGCACAGCAGGACCTTTTGGTGGAGGGGGT
121459392 GGAGGGGGCACAGCAGGACCTTTTGGTGGAGGGGGT
1 GGAGGGGGCACAGCAGGACCTTTTGGTGGAGGGGGT
* * * * *
121459428 GGAGGGGGCACCG-TGGAACCTTTCGGTGGAGGTGGA
1 GGAGGGGGCACAGCAGG-ACCTTTTGGTGGAGGGGGT
** * *
121459464 GGAGGGGGTGCAGCAGGAGCTTTCGGTGGAGGGGGT
1 GGAGGGGGCACAGCAGGACCTTTTGGTGGAGGGGGT
121459500 G
1 G
121459501 CTGGAGGAGC
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
35 2 0.02
36 122 0.97
37 2 0.02
ACGTcount: A:0.18, C:0.14, G:0.52, T:0.17
Consensus pattern (36 bp):
GGAGGGGGCACAGCAGGACCTTTTGGTGGAGGGGGT
Found at i:121459498 original size:27 final size:27
Alignment explanation
Indices: 121459464--121459581 Score: 191
Period size: 27 Copynumber: 4.4 Consensus size: 27
121459454 TGGAGGTGGA
* * *
121459464 GGAGGGGGTGCAGCAGGAGCTTTCGGT
1 GGAGGGGGTGCTGGAGGAGCTTTTGGT
121459491 GGAGGGGGTGCTGGAGGAGCTTTTGGT
1 GGAGGGGGTGCTGGAGGAGCTTTTGGT
*
121459518 GGAGGGGGCGCTGGAGGAGCTTTTGGT
1 GGAGGGGGTGCTGGAGGAGCTTTTGGT
*
121459545 GGAGGGGGCGCTGGAGGAGCTTTTGGT
1 GGAGGGGGTGCTGGAGGAGCTTTTGGT
121459572 GGAGGGGGTG
1 GGAGGGGGTG
121459582 GAGGGGGCAC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.12, C:0.10, G:0.57, T:0.21
Consensus pattern (27 bp):
GGAGGGGGTGCTGGAGGAGCTTTTGGT
Found at i:121459583 original size:36 final size:36
Alignment explanation
Indices: 121459542--121459621 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
121459532 AGGAGCTTTT
*
121459542 GGTGGAGGGGGCGCTGGAGGAGCTTTTGGTGGAGGG
1 GGTGGAGGGGGCACTGGAGGAGCTTTTGGTGGAGGG
121459578 GGTGGAGGGGGCACTGGAGGAGCTTTTGGTGGAGGG
1 GGTGGAGGGGGCACTGGAGGAGCTTTTGGTGGAGGG
121459614 GGTGGAGG
1 GGTGGAGG
121459622 AGGAATAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.12, C:0.07, G:0.61, T:0.19
Consensus pattern (36 bp):
GGTGGAGGGGGCACTGGAGGAGCTTTTGGTGGAGGG
Found at i:121459844 original size:12 final size:12
Alignment explanation
Indices: 121459818--121459860 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
121459808 GCTGAAGGAT
* *
121459818 GGTGGATGCAAG
1 GGTGGAGGCAGG
*
121459830 GGTGGGGGCAGG
1 GGTGGAGGCAGG
*
121459842 GGTGGAGGTAGG
1 GGTGGAGGCAGG
121459854 GGTGGAG
1 GGTGGAG
121459861 ATGGCAATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.16, C:0.05, G:0.65, T:0.14
Consensus pattern (12 bp):
GGTGGAGGCAGG
Found at i:121463027 original size:23 final size:22
Alignment explanation
Indices: 121462990--121463039 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
121462980 AAAAGTTGTC
*
121462990 AAATTATAAGATTAATGTTTAAAA
1 AAATTATAAGATTAA--ATTAAAA
*
121463014 AAATTA-ATGATTAAATTAAAA
1 AAATTATAAGATTAAATTAAAA
121463035 AAATT
1 AAATT
121463040 TGTCAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 11 0.46
23 7 0.29
24 6 0.25
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (22 bp):
AAATTATAAGATTAAATTAAAA
Found at i:121481124 original size:142 final size:143
Alignment explanation
Indices: 121480882--121481138 Score: 383
Period size: 142 Copynumber: 1.8 Consensus size: 143
121480872 GTTTTGATCA
* * * * *
121480882 TTAGGGTTTTTCGGGTTGGATCATCTTTGGGTTCATATCATTTCGGATCCTTTTGTGTTTGGAAC
1 TTAGGGTTTTTCAGGTTGGATAATCTTTGGATTCATATCATTTCGGATCATTTTATGTTTGGAAC
* *
121480947 ATCTTGGATTCGAATTCTTTTCAGGTTTGAATGAGCCAGTTTGGGTTATTGCCTTTTGATTACTA
66 ATCTTGGATTCGAATTATTTTCAGGTTCGAATGAGCCAGTTTGGGTTATTGCCTTTTGATTACTA
121481012 GGTTCATTCGTTT
131 GGTTCATTCGTTT
*
121481025 TTAGGGTTTTTCAGGTTGGATAATC-TTGGATTCATATCATTTTGGATCATTTTATGTTTGGAAC
1 TTAGGGTTTTTCAGGTTGGATAATCTTTGGATTCATATCATTTCGGATCATTTTATGTTTGGAAC
* * **
121481089 AT-TTGGAATTTGAATTATTTTCGGGTTCGGTTGAGCCAGTTTGGGTTATT
66 ATCTTGG-ATTCGAATTATTTTCAGGTTCGAATGAGCCAGTTTGGGTTATT
121481139 CCCCTTTCAT
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
141 4 0.04
142 74 0.73
143 23 0.23
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.46
Consensus pattern (143 bp):
TTAGGGTTTTTCAGGTTGGATAATCTTTGGATTCATATCATTTCGGATCATTTTATGTTTGGAAC
ATCTTGGATTCGAATTATTTTCAGGTTCGAATGAGCCAGTTTGGGTTATTGCCTTTTGATTACTA
GGTTCATTCGTTT
Found at i:121481856 original size:29 final size:29
Alignment explanation
Indices: 121481814--121481871 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
121481804 TTTTAGAGGC
* *
121481814 TGGATCAAATTAGTCCCTCTACTATTAAA
1 TGGACCAAATTAGTCCCTATACTATTAAA
*
121481843 TGGACCAATTTAGTCCCTATACTATTAAA
1 TGGACCAAATTAGTCCCTATACTATTAAA
121481872 AAGAATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (29 bp):
TGGACCAAATTAGTCCCTATACTATTAAA
Found at i:121493557 original size:7 final size:7
Alignment explanation
Indices: 121493545--121493588 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
121493535 AGAAATGAGC
121493545 TTTTTAT
1 TTTTTAT
121493552 TTTTTAT
1 TTTTTAT
121493559 TTTTTA-
1 TTTTTAT
*
121493565 TTTTTAC
1 TTTTTAT
*
121493572 CTTTTA-
1 TTTTTAT
121493578 TTTTTAT
1 TTTTTAT
121493585 TTTT
1 TTTT
121493589 ATTCTTTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 11 0.33
7 22 0.67
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:121493561 original size:6 final size:6
Alignment explanation
Indices: 121493545--121493591 Score: 58
Period size: 6 Copynumber: 7.3 Consensus size: 6
121493535 AGAAATGAGC
*
121493545 TTTTTA TTTTTTA TTTTTTA TTTTTA CCTTTTA TTTTTA TTTTTA TT
1 TTTTTA -TTTTTA -TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TT
121493592 CTTTTCTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
6 19 0.51
7 18 0.49
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:121493568 original size:13 final size:13
Alignment explanation
Indices: 121493545--121493588 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
121493535 AGAAATGAGC
121493545 TTTTTATTTTTTAT
1 TTTTTA-TTTTTAT
*
121493559 TTTTTATTTTTAC
1 TTTTTATTTTTAT
*
121493572 CTTTTATTTTTAT
1 TTTTTATTTTTAT
121493585 TTTT
1 TTTT
121493589 ATTCTTTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:121493570 original size:20 final size:19
Alignment explanation
Indices: 121493545--121493596 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
121493535 AGAAATGAGC
121493545 TTTTTATTTTTTATTTTTTA
1 TTTTTATTTTTTA-TTTTTA
**
121493565 TTTTTACCTTTTATTTTTA
1 TTTTTATTTTTTATTTTTA
121493584 TTTTTATTCTTTT
1 TTTTTATT-TTTT
121493597 CTTTGCTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTATTTTTTATTTTTA
Found at i:121495298 original size:13 final size:13
Alignment explanation
Indices: 121495280--121495322 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
121495270 TAATATATTA
121495280 TTTGATATTTAAG
1 TTTGATATTTAAG
121495293 TTTGATATTTTTAA-
1 TTTGATA--TTTAAG
*
121495307 TTTAATATTTAAG
1 TTTGATATTTAAG
121495320 TTT
1 TTT
121495323 TTTTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 5 0.19
13 10 0.38
14 6 0.23
15 5 0.19
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (13 bp):
TTTGATATTTAAG
Found at i:121495314 original size:27 final size:27
Alignment explanation
Indices: 121495279--121495357 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
121495269 TTAATATATT
*
121495279 ATTTGATATTTAAGTTTGATATTTTTA
1 ATTTAATATTTAAGTTTGATATTTTTA
*
121495306 ATTTAATATTTAAGTTT--TTTTATTTA
1 ATTTAATATTTAAGTTTGATATT-TTTA
* *
121495332 ATTTAGTATTTGAA-CTTGATATTTTT
1 ATTTAATATTT-AAGTTTGATATTTTT
121495358 TTTACTTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
25 3 0.07
26 16 0.37
27 21 0.49
28 3 0.07
ACGTcount: A:0.29, C:0.01, G:0.09, T:0.61
Consensus pattern (27 bp):
ATTTAATATTTAAGTTTGATATTTTTA
Found at i:121495393 original size:26 final size:26
Alignment explanation
Indices: 121495302--121495394 Score: 107
Period size: 26 Copynumber: 3.4 Consensus size: 26
121495292 GTTTGATATT
*
121495302 TTTAATTTAATATTTAAGTTTTTTTA
1 TTTAATTTAATATTTAATTTTTTTTA
*
121495328 TTTAATTTAGTATTTGAACTTGATATTTTT-
1 TTTAATTTAATATTT-AA-TT--T-TTTTTA
*
121495358 TTTACTTTAATATTTAATTTTTTTTA
1 TTTAATTTAATATTTAATTTTTTTTA
121495384 TTTAATTTAAT
1 TTTAATTTAAT
121495395 TTCTAAACTT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
25 5 0.09
26 25 0.45
27 2 0.04
28 3 0.05
29 2 0.04
30 14 0.25
31 5 0.09
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTAATTTAATATTTAATTTTTTTTA
Found at i:121495404 original size:56 final size:56
Alignment explanation
Indices: 121495300--121495405 Score: 160
Period size: 56 Copynumber: 1.9 Consensus size: 56
121495290 AAGTTTGATA
* *
121495300 TTTTTAATTTAATATTTAAGTTTTTTTATTTAATTTAGTATTTGAACTTGATATTT
1 TTTTTAATTTAATATTTAAGTTTTTTTATTTAATTTAATATTTAAACTTGATATTT
* *
121495356 TTTTTACTTTAATATTTAATTTTTTTTATTTAATTTAAT-TTCTAAACTTG
1 TTTTTAATTTAATATTTAAGTTTTTTTATTTAATTTAATATT-TAAACTTG
121495406 TCAAGTGTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
55 2 0.04
56 43 0.96
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (56 bp):
TTTTTAATTTAATATTTAAGTTTTTTTATTTAATTTAATATTTAAACTTGATATTT
Found at i:121502163 original size:20 final size:21
Alignment explanation
Indices: 121502117--121502163 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
121502107 ATATTTTTAT
**
121502117 ACAAATCTTCTTAAATTTTAA
1 ACAAATCTTCTTAAAACTTAA
* *
121502138 ATAAATCTT-TTAAAACTTGA
1 ACAAATCTTCTTAAAACTTAA
121502158 ACAAAT
1 ACAAAT
121502164 ATCTCAACCC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (21 bp):
ACAAATCTTCTTAAAACTTAA
Found at i:121506224 original size:22 final size:22
Alignment explanation
Indices: 121506199--121506247 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
121506189 TATAACTATT
121506199 TTAAAATAATAAATATTTTAT-A
1 TTAAAAT-ATAAATATTTTATAA
* * *
121506221 TTAATATTTATATATTTTATAA
1 TTAAAATATAAATATTTTATAA
121506243 TTAAA
1 TTAAA
121506248 TTTAAAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAAATATAAATATTTTATAA
Found at i:121506235 original size:21 final size:21
Alignment explanation
Indices: 121506211--121506251 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
121506201 AAAATAATAA
121506211 ATATTTTAT-ATTAATATTTAT
1 ATATTTTATAATTAA-ATTTAT
121506232 ATATTTTATAATTAAATTTA
1 ATATTTTATAATTAAATTTA
121506252 AAATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTTTATAATTAAATTTAT
Found at i:121507041 original size:20 final size:20
Alignment explanation
Indices: 121507013--121507050 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
121507003 TTATTATGTT
*
121507013 TAAATTTAAAAGTTTAAAGA
1 TAAAGTTAAAAGTTTAAAGA
*
121507033 TAAAGTTAATAGTTTAAA
1 TAAAGTTAAAAGTTTAAA
121507051 ATGTATGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.37
Consensus pattern (20 bp):
TAAAGTTAAAAGTTTAAAGA
Found at i:121517353 original size:19 final size:19
Alignment explanation
Indices: 121517309--121517354 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
121517299 AAATTTAGTA
*
121517309 AAAT-ATTTTTAAATCATT
1 AAATAATTTTTAAATCAAT
121517327 AAATTAATTTTTAATAT-AAT
1 AAA-TAATTTTTAA-ATCAAT
121517347 AAATAATT
1 AAATAATT
121517355 ACACATGGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 13 0.54
21 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
AAATAATTTTTAAATCAAT
Found at i:121518950 original size:19 final size:18
Alignment explanation
Indices: 121518909--121518948 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
121518899 AACAATATGC
121518909 AATTCAATTATTAATACAA
1 AATTCAATTATTAATA-AA
121518928 AATTCTAATTATTAACTAAA
1 AATTC-AATTATTAA-TAAA
121518948 A
1 A
121518949 TTTTCACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 12 0.63
21 2 0.11
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTCAATTATTAATAAA
Found at i:121523411 original size:14 final size:14
Alignment explanation
Indices: 121523378--121523411 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
121523368 ATAACAGAAT
121523378 AAATAATAAGGATA
1 AAATAATAAGGATA
* *
121523392 ATATAATAAGTATA
1 AAATAATAAGGATA
121523406 AAATAA
1 AAATAA
121523412 GTCGAAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (14 bp):
AAATAATAAGGATA
Found at i:121529665 original size:22 final size:22
Alignment explanation
Indices: 121529640--121529714 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
121529630 AGATTACAAG
121529640 ATAATATAAACACGATACGAGT
1 ATAATATAAACACGATACGAGT
* * * *
121529662 ATAATAAAGTATATAAGATTACAAG-
1 ATAAT--A-TAAACACGA-TACGAGT
*
121529687 ATAATATAAACACGATATGAGT
1 ATAATATAAACACGATACGAGT
121529709 ATAATA
1 ATAATA
121529715 AAGTTAAGAT
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
21 4 0.10
22 17 0.44
23 1 0.03
24 1 0.03
25 11 0.28
26 5 0.13
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (22 bp):
ATAATATAAACACGATACGAGT
Found at i:121529680 original size:47 final size:47
Alignment explanation
Indices: 121529624--121529718 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
121529614 AACAAACATA
121529624 TATATAAGATTACAAGATAATATAAACACGATACGAGTATAATAAAG
1 TATATAAGATTACAAGATAATATAAACACGATACGAGTATAATAAAG
*
121529671 TATATAAGATTACAAGATAATATAAACACGATATGAGTATAATAAAG
1 TATATAAGATTACAAGATAATATAAACACGATACGAGTATAATAAAG
121529718 T
1 T
121529719 TAAGATGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (47 bp):
TATATAAGATTACAAGATAATATAAACACGATACGAGTATAATAAAG
Found at i:121533286 original size:23 final size:23
Alignment explanation
Indices: 121533260--121533304 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
121533250 TCAAAAATAC
121533260 GGTTCGATGATTAACTCTATTAT
1 GGTTCGATGATTAACTCTATTAT
121533283 GGTTCGATGATTAACTCTATTA
1 GGTTCGATGATTAACTCTATTA
121533305 AACTTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (23 bp):
GGTTCGATGATTAACTCTATTAT
Found at i:121534090 original size:39 final size:40
Alignment explanation
Indices: 121534042--121534128 Score: 122
Period size: 39 Copynumber: 2.2 Consensus size: 40
121534032 AAATTCTAAA
* * **
121534042 AATACAATAAAATATTTCTTATATTTAT-TTATATTTTTT
1 AATATAATAAAATATTTATTATATTTATACAATATTTTTT
121534081 AATATAATAAAATATTTATTATATTTATGACAATATTTTTT
1 AATATAATAAAATATTTATTATATTTAT-ACAATATTTTTT
121534122 AATATAA
1 AATATAA
121534129 ATACTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 26 0.62
41 16 0.38
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (40 bp):
AATATAATAAAATATTTATTATATTTATACAATATTTTTT
Found at i:121534136 original size:16 final size:17
Alignment explanation
Indices: 121534112--121534143 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
121534102 TATTTATGAC
121534112 AATA-TTTTTTAATATA
1 AATACTTTTTTAATATA
121534128 AATACTTTTTTAATAT
1 AATACTTTTTTAATAT
121534144 GTTAGAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
AATACTTTTTTAATATA
Found at i:121535664 original size:28 final size:28
Alignment explanation
Indices: 121535624--121535680 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
121535614 GATAGCATTG
121535624 TTGAGATTGGTAGTCACAAGTCCAGTAA
1 TTGAGATTGGTAGTCACAAGTCCAGTAA
121535652 TTGAGATTGGTAGTCACAAGTCCAGTAA
1 TTGAGATTGGTAGTCACAAGTCCAGTAA
121535680 T
1 T
121535681 AGACCATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (28 bp):
TTGAGATTGGTAGTCACAAGTCCAGTAA
Found at i:121539457 original size:29 final size:30
Alignment explanation
Indices: 121539409--121539468 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
121539399 GGACTCTTGG
*
121539409 AATTTAGTTTTTATATTTTTA-TTTTTAAA
1 AATTTAGTTTTTATATTTTTAGATTTTAAA
*
121539438 AATTTAG-TTTTATGTTTTTTAGATTTTAAA
1 AATTTAGTTTTTAT-ATTTTTAGATTTTAAA
121539468 A
1 A
121539469 TTGAGCTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 6 0.22
29 13 0.48
30 8 0.30
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.62
Consensus pattern (30 bp):
AATTTAGTTTTTATATTTTTAGATTTTAAA
Found at i:121546289 original size:16 final size:16
Alignment explanation
Indices: 121546262--121546310 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
121546252 TTCGCTGTAT
*
121546262 TGGAATATAGGCGTAA
1 TGGAATAGAGGCGTAA
*
121546278 TGGATTAGAGGCGTAA
1 TGGAATAGAGGCGTAA
121546294 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
121546310 T
1 T
121546311 AGCAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.35, C:0.06, G:0.35, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:121546354 original size:45 final size:44
Alignment explanation
Indices: 121546290--121546379 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
121546280 GATTAGAGGC
121546290 GTAATGGAATAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAAT
* *
121546335 GTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
121546379 G
1 G
121546380 GAATAGAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.43
45 23 0.55
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
Found at i:121546561 original size:16 final size:16
Alignment explanation
Indices: 121546524--121546565 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
121546514 TTAATCATAT
*
121546524 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
121546540 TT-AAATATATTATAA
1 TTAAAATATATTATAA
121546555 TTAAAATATAT
1 TTAAAATATAT
121546566 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:121546572 original size:14 final size:15
Alignment explanation
Indices: 121546533--121546574 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
121546523 TTTAAACATA
*
121546533 ATTATTATTAAATAT
1 ATTATAATTAAATAT
121546548 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
121546562 A-TATAATTTAATA
1 ATTATAATTAAATA
121546575 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:121546685 original size:18 final size:17
Alignment explanation
Indices: 121546664--121546698 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
121546654 TTATTATTAA
*
121546664 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
121546682 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
121546699 TCTAATAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:121546780 original size:118 final size:120
Alignment explanation
Indices: 121546522--121546816 Score: 499
Period size: 120 Copynumber: 2.5 Consensus size: 120
121546512 ATTTAATCAT
*
121546522 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
*
121546587 GTCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
65 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
121546643 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC-TAATAA
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
121546707 TCAATATTCTTATATGAATTTACT-AAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
* *
121546761 ATTTGAA-ATAATTAATATTAAATATA-TTTAATTAAAATATATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
121546817 TAAAATAATT
Statistics
Matches: 168, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
117 29 0.17
118 51 0.30
119 31 0.18
120 53 0.32
121 4 0.02
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
Found at i:121546813 original size:17 final size:17
Alignment explanation
Indices: 121546782--121546815 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
121546772 TTAATATTAA
121546782 ATATATTTAATTAAAAT
1 ATATATTTAATTAAAAT
121546799 ATATGATTTAA-TAAAAT
1 ATAT-ATTTAATTAAAAT
121546816 TTAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATATATTTAATTAAAAT
Found at i:121546825 original size:118 final size:118
Alignment explanation
Indices: 121546522--121546816 Score: 495
Period size: 118 Copynumber: 2.5 Consensus size: 118
121546512 ATTTAATCAT
121546522 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATT-TAATTAAAATATATAATTTAATAAAATTC-TAATA
*
121546587 GTCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
63 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
121546643 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTAATAAT
1 ATTTAACATAATTATTATTAAATATA-TTTAATTAAAATATATAATTTAATAAAATTCTAATAAT
*
121546708 CAATATTCTTATATGAATTTACT-AAATCATAATATATGATACTATAAAATATA
65 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
* *
121546761 ATTTGAA-ATAATTAATATTAAATATATTTAATTAAAATATATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTTAATTAAAATATATAATTTAATAAAATT
121546817 TAAAATAATT
Statistics
Matches: 168, Mismatches: 4, Indels: 8
0.93 0.02 0.04
Matches are distributed among these distances:
117 29 0.17
118 51 0.30
119 31 0.18
120 51 0.30
121 6 0.04
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (118 bp):
ATTTAACATAATTATTATTAAATATATTTAATTAAAATATATAATTTAATAAAATTCTAATAATC
AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
Found at i:121551396 original size:30 final size:31
Alignment explanation
Indices: 121551353--121551411 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
121551343 ACAGTTAGAG
* * *
121551353 GATTTAATTTCTAATTTT-TTAAAGTATATA
1 GATTAAATCTCTAATTTTGTCAAAGTATATA
121551383 GATTAAATCTCTAATTTTGTCAAAGTATA
1 GATTAAATCTCTAATTTTGTCAAAGTATA
121551412 AGGAGTAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.47
Consensus pattern (31 bp):
GATTAAATCTCTAATTTTGTCAAAGTATATA
Found at i:121553034 original size:19 final size:20
Alignment explanation
Indices: 121553000--121553037 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
121552990 CTTTAGGTTT
*
121553000 ATTTTAGTTATAGTTAGTTA
1 ATTTGAGTTATAGTTAGTTA
121553020 ATTTGAGTT-TAGTTAGTT
1 ATTTGAGTTATAGTTAGTT
121553038 GTTAAGTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.55
Consensus pattern (20 bp):
ATTTGAGTTATAGTTAGTTA
Found at i:121556152 original size:26 final size:25
Alignment explanation
Indices: 121556114--121556162 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
121556104 TGGGATGAAG
*
121556114 AAAAACTCAAACATCAAATTGAAAA
1 AAAAACTCAAACACCAAATTGAAAA
*
121556139 AAAATACTCAAACACCTAATTGAA
1 AAAA-ACTCAAACACCAAATTGAA
121556163 CATTAAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.59, C:0.18, G:0.04, T:0.18
Consensus pattern (25 bp):
AAAAACTCAAACACCAAATTGAAAA
Found at i:121560730 original size:30 final size:30
Alignment explanation
Indices: 121560690--121560746 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
121560680 TTTTATAAAT
121560690 AATTAATA-TTTAT-TACTTAAAAATATTTGA
1 AATTAATATTTTATATA-TT-AAAATATTTGA
*
121560720 AATTTATATTTTATATATTAAAATATT
1 AATTAATATTTTATATATTAAAATATT
121560747 AACAAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 15 0.62
31 7 0.29
32 2 0.08
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (30 bp):
AATTAATATTTTATATATTAAAATATTTGA
Found at i:121561146 original size:32 final size:32
Alignment explanation
Indices: 121561108--121561174 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
121561098 CGATTTTAAC
121561108 TTAAACATAATTTGGTCTTTATTTTAATAATG
1 TTAAACATAATTTGGTCTTTATTTTAATAATG
* *
121561140 TTAAACATAATTTTGTCTTTATTTTACTAATG
1 TTAAACATAATTTGGTCTTTATTTTAATAATG
121561172 TTA
1 TTA
121561175 TTCGTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (32 bp):
TTAAACATAATTTGGTCTTTATTTTAATAATG
Found at i:121561815 original size:21 final size:19
Alignment explanation
Indices: 121561790--121561835 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 19
121561780 ATGTATTGTT
121561790 TATAAAATT-TTATATATGATA
1 TATAAAATTATT-TAT-T-ATA
121561811 TATAAAATTATTTATTATA
1 TATAAAATTATTTATTATA
121561830 TATAAA
1 TATAAA
121561836 TAAAAATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.38
20 1 0.04
21 12 0.50
22 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATAAAATTATTTATTATA
Found at i:121561821 original size:19 final size:19
Alignment explanation
Indices: 121561799--121561835 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
121561789 TTATAAAATT
121561799 TTATATATGATATATAAAA
1 TTATATATGATATATAAAA
* *
121561818 TTATTTATTATATATAAA
1 TTATATATGATATATAAA
121561836 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
TTATATATGATATATAAAA
Found at i:121561829 original size:24 final size:22
Alignment explanation
Indices: 121561790--121561847 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
121561780 ATGTATTGTT
121561790 TATAAAA-T-TTTATATATGATA
1 TATAAAATTATTTATATAT-ATA
121561811 TATAAAATTATTTATTATATATA
1 TATAAAATTATTTA-TATATATA
*
121561834 AATAAAAATTATTT
1 TAT-AAAATTATTT
121561848 TTTAAAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 7 0.22
22 1 0.03
23 9 0.28
24 15 0.47
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TATAAAATTATTTATATATATA
Found at i:121561858 original size:24 final size:25
Alignment explanation
Indices: 121561814--121561876 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 25
121561804 TATGATATAT
* * *
121561814 AAAATTATTTATTATATATAAA-TA
1 AAAATTATTTTTTAAAAATAAAGTA
121561838 AAAATTATTTTTTAAAAATAAAGTA
1 AAAATTATTTTTTAAAAATAAAGTA
121561863 ATATAATT-TTTTTT
1 A-A-AATTATTTTTT
121561877 CTTTTCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 19 0.58
25 3 0.09
26 7 0.21
27 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
AAAATTATTTTTTAAAAATAAAGTA
Found at i:121561859 original size:20 final size:24
Alignment explanation
Indices: 121561799--121561847 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
121561789 TTATAAAATT
*
121561799 TTATATATGATATATAAAATTATTTA
1 TTATATAT-AAATA-AAAATTATTTA
121561825 TTATATATAAATAAAAATTATTT
1 TTATATATAAATAAAAATTATTT
121561848 TTTAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
25 4 0.18
26 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
TTATATATAAATAAAAATTATTTA
Found at i:121562356 original size:21 final size:21
Alignment explanation
Indices: 121562304--121562356 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
121562294 TCATATTTAA
*
121562304 TTTTATT-TTATATCAATTTT
1 TTTTATTATTATATAAATTTT
121562324 TTTATAATTATTAT-TAAATTATT
1 TTT-T-ATTATTATATAAATT-TT
121562347 TTTTATTATT
1 TTTTATTATT
121562357 TAATTATCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 3 0.11
21 7 0.25
22 9 0.32
23 9 0.32
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTATTATTATATAAATTTT
Found at i:121563751 original size:17 final size:18
Alignment explanation
Indices: 121563729--121563763 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
121563719 GCAAAACTTT
*
121563729 TAAAATT-AAAAATAAAG
1 TAAAATTGAAAAAGAAAG
121563746 TAAAATTGAAAAAGAAAG
1 TAAAATTGAAAAAGAAAG
121563764 AGTTTGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (18 bp):
TAAAATTGAAAAAGAAAG
Found at i:121568313 original size:180 final size:181
Alignment explanation
Indices: 121567984--121568346 Score: 602
Period size: 180 Copynumber: 2.0 Consensus size: 181
121567974 TGATGATCAC
* * *
121567984 ATAGCAACTTCATATGTACTTCAAATTCCATGTTTCCATTTGATCATCATTAAATCATATATAAC
1 ATAGCAACTTCAAATGTACTTCAAATTCCATGGTTCCATTTGATCATCAATAAATCATATAT-A-
*
121568049 CATATGAATGTACATGCAAGTCATAGGAAGCATGGAGTGAAAAGTTCTCACATAACCATGATGGT
64 -ATATGAATGTACATGCAAGTCATAGGAAGCATGGAGTGAAAAGTTCTCACATAACCATGATGGG
* *
121568114 CACATAGTAACTTCATATGTACTTCAAATTCCATGGTTCCATATATGAATGTAT
128 CACATAGCAACTCCATATGTACTTCAAATTCCATGGTTCCATATATGAATGTAT
* *
121568168 ATAGTAACTTCAAATGTACTTCAAGTTCCATGGTTCCATTTGATCATCAATAAATCATATAT-AT
1 ATAGCAACTTCAAATGTACTTCAAATTCCATGGTTCCATTTGATCATCAATAAATCATATATAAT
* *
121568232 ATGAATGTACATGCAAGTCATAGGAAGCATGGAGTGAAAAGTTCTCCCATAACCATGATGGGCGC
66 ATGAATGTACATGCAAGTCATAGGAAGCATGGAGTGAAAAGTTCTCACATAACCATGATGGGCAC
121568297 ATAGCAACTCCATATGTACTTCAAATTCCATGGTTCCATATATGAATGTA
131 ATAGCAACTCCATATGTACTTCAAATTCCATGGTTCCATATATGAATGTA
121568347 CAAGCAAATC
Statistics
Matches: 169, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
180 112 0.66
184 57 0.34
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (181 bp):
ATAGCAACTTCAAATGTACTTCAAATTCCATGGTTCCATTTGATCATCAATAAATCATATATAAT
ATGAATGTACATGCAAGTCATAGGAAGCATGGAGTGAAAAGTTCTCACATAACCATGATGGGCAC
ATAGCAACTCCATATGTACTTCAAATTCCATGGTTCCATATATGAATGTAT
Found at i:121569105 original size:16 final size:16
Alignment explanation
Indices: 121569076--121569111 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
121569066 GAAAAGAATG
121569076 AAAACCCAGAGAAAAA
1 AAAACCCAGAGAAAAA
121569092 AAAATCCCAG-GAAAAA
1 AAAA-CCCAGAGAAAAA
121569108 AAAA
1 AAAA
121569112 GAAAAAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.69, C:0.17, G:0.11, T:0.03
Consensus pattern (16 bp):
AAAACCCAGAGAAAAA
Found at i:121576941 original size:10 final size:10
Alignment explanation
Indices: 121576922--121576953 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
121576912 TTTTAGGATT
121576922 TTAT-TTTAA
1 TTATCTTTAA
121576931 TTATCTTTAA
1 TTATCTTTAA
121576941 TTATCTTTAA
1 TTATCTTTAA
121576951 TTA
1 TTA
121576954 AATGTATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:121577699 original size:17 final size:19
Alignment explanation
Indices: 121577663--121577700 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
121577653 TTATTTTTTC
121577663 TTATTTCAATTTCTGCAAT
1 TTATTTCAATTTCTGCAAT
121577682 TTATTT-AATTTC-GCAAT
1 TTATTTCAATTTCTGCAAT
121577699 TT
1 TT
121577701 CAATTCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (19 bp):
TTATTTCAATTTCTGCAAT
Found at i:121579781 original size:3 final size:3
Alignment explanation
Indices: 121579773--121579797 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
121579763 GATCGGCGGT
121579773 GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG G
121579798 GATGGGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:121582187 original size:46 final size:47
Alignment explanation
Indices: 121582134--121582418 Score: 341
Period size: 46 Copynumber: 6.2 Consensus size: 47
121582124 TGATGTCATA
* * **
121582134 GTATCTTTCAACTATGGTTTTACTTGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTCATTTCATGTCATGTTGCCATG
* *
121582180 GTATCTTTCAACCATGGTCTTA-TTTATTTTCCTGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTCA-TTTCATGTCATGTTGCCATG
*
121582227 GTATCTTTCAACCATGGTCTTAC-TCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTCATTTCATGTCATGTTGCCATG
* * *
121582273 GTATCTTTTAACCATGGTCTTA-TTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTCATTTCATGTCATGTTGCCATG
* * * *
121582319 ATATTTTTCAACCATGGTCTTAC-ACATTTCATATCACT-TTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTCATTTCATGTCA-TGTTGCCATG
* * *
121582365 GTATCTTTCAACCATGGTCTTAC-ACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTTCATTTCATGTCATGTTGCCATG
*
121582411 ATATCTTT
1 GTATCTTT
121582419 TCCATATCAC
Statistics
Matches: 213, Mismatches: 19, Indels: 14
0.87 0.08 0.06
Matches are distributed among these distances:
45 2 0.01
46 172 0.81
47 39 0.18
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.44
Consensus pattern (47 bp):
GTATCTTTCAACCATGGTCTTACTTCATTTCATGTCATGTTGCCATG
Found at i:121582195 original size:24 final size:24
Alignment explanation
Indices: 121582168--121582242 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
121582158 TGTTTTCTGT
121582168 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
* * * ***
121582192 CATGGT-CTTAT-TTAT-TTTCCTGT
1 CATGTTGC-CATGGTATCTTT-CAAC
121582215 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
121582239 CATG
1 CATG
121582243 GTCTTACTCA
Statistics
Matches: 34, Mismatches: 12, Indels: 10
0.61 0.21 0.18
Matches are distributed among these distances:
22 3 0.09
23 12 0.35
24 16 0.47
25 3 0.09
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.43
Consensus pattern (24 bp):
CATGTTGCCATGGTATCTTTCAAC
Found at i:121582244 original size:93 final size:93
Alignment explanation
Indices: 121582104--121582386 Score: 351
Period size: 92 Copynumber: 3.1 Consensus size: 93
121582094 TCTCTTCCTC
* * * * * * **
121582104 GGTCTTATTTATTTT-C-GACATGATGTCATAGTATCTTTCAACTATGGTTTTACTTGTTTTC-T
1 GGTCTTATTTATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCAT
121582166 GTCATGTTGCCATGGTATCTTTCAACCAT
65 GTCATGTTGCCATGGTATCTTTCAACCAT
121582195 GGTCTTATTTATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATG
1 GGTCTTATTTATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATG
* *
121582260 TCAGGTTGCCATGGTATCTTTTAACCAT
66 TCATGTTGCCATGGTATCTTTCAACCAT
* * * * * * * *
121582288 GGTCTTATTCA-TTTCATATCACGTTGCCATGATATTTTTCAACCATGGTCTTACACATTTCATA
1 GGTCTTATTTATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATG
121582352 TCACT-TTGCCATGGTATCTTTCAACCAT
66 TCA-TGTTGCCATGGTATCTTTCAACCAT
121582380 GGTCTTA
1 GGTCTTA
121582387 CACATTTCAT
Statistics
Matches: 168, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
91 15 0.09
92 84 0.50
93 69 0.41
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.44
Consensus pattern (93 bp):
GGTCTTATTTATTTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATG
TCATGTTGCCATGGTATCTTTCAACCAT
Found at i:121582425 original size:27 final size:27
Alignment explanation
Indices: 121582394--121582445 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
121582384 TTACACATTT
*
121582394 CATATCAGGTTGCCATGATATCTTTTC
1 CATATCACGTTGCCATGATATCTTTTC
*
121582421 CATATCACGTTGCCATGGTATCTTT
1 CATATCACGTTGCCATGATATCTTT
121582446 CAACCATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (27 bp):
CATATCACGTTGCCATGATATCTTTTC
Found at i:121582432 original size:119 final size:119
Alignment explanation
Indices: 121582302--121582520 Score: 384
Period size: 119 Copynumber: 1.8 Consensus size: 119
121582292 TTATTCATTT
* *
121582302 CATATCACGTTGCCATGATATTTTTCAACCATGGTCTTACACATTTCATATCACTTTGCCATGGT
1 CATATCACGTTGCCATGATATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
*
121582367 ATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGATATCTTTTC
66 ATCTTTCAACCATGGTCTTACACATTCCATATCAGGTTGCCATGATATCTTTTC
* * *
121582421 CATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGT
1 CATATCACGTTGCCATGATATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
121582486 ATCTTTCAACCATGGTCTTACACATTCCATATCAG
66 ATCTTTCAACCATGGTCTTACACATTCCATATCAG
121582521 AGAGCACACT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 94 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (119 bp):
CATATCACGTTGCCATGATATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
ATCTTTCAACCATGGTCTTACACATTCCATATCAGGTTGCCATGATATCTTTTC
Found at i:121582434 original size:73 final size:73
Alignment explanation
Indices: 121582348--121582491 Score: 261
Period size: 73 Copynumber: 2.0 Consensus size: 73
121582338 TTACACATTT
*
121582348 CATATCACTTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGAT
1 CATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGAT
121582413 ATCTTTTC
66 ATCTTTTC
* *
121582421 CATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGT
1 CATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGAT
121582486 ATCTTT
66 ATCTTT
121582492 CAACCATGGT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (73 bp):
CATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGAT
ATCTTTTC
Found at i:121582484 original size:46 final size:46
Alignment explanation
Indices: 121582418--121582520 Score: 179
Period size: 46 Copynumber: 2.2 Consensus size: 46
121582408 ATGATATCTT
*
121582418 TTCCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TTCCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
* *
121582464 TTTCATATCAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
1 TTCCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
121582510 TTCCATATCAG
1 TTCCATATCAG
121582521 AGAGCACACT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (46 bp):
TTCCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:121586608 original size:27 final size:27
Alignment explanation
Indices: 121586560--121586615 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
121586550 TTCTTCCTTG
*
121586560 AGCATTTGAACTGAGTTAGAATCTTAA
1 AGCATTTGAACTGAATTAGAATCTTAA
* *
121586587 AGCATTTGAATTGAATTTGAATCTTAA
1 AGCATTTGAACTGAATTAGAATCTTAA
121586614 AG
1 AG
121586616 TCATCAATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (27 bp):
AGCATTTGAACTGAATTAGAATCTTAA
Found at i:121590472 original size:15 final size:15
Alignment explanation
Indices: 121590452--121590483 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
121590442 TTGGGTATTT
121590452 TTCATATTTTTGTTA
1 TTCATATTTTTGTTA
121590467 TTCATATTTTTGTTA
1 TTCATATTTTTGTTA
121590482 TT
1 TT
121590484 TTTCATTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (15 bp):
TTCATATTTTTGTTA
Found at i:121590886 original size:16 final size:15
Alignment explanation
Indices: 121590848--121590888 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
121590838 TTAATTTTAC
121590848 TATA-TATT-TTAAA
1 TATATTATTATTAAA
*
121590861 TATTTTATTATTAAA
1 TATATTATTATTAAA
121590876 TTATATTATTATT
1 -TATATTATTATT
121590889 CTTAATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 3 0.13
14 4 0.17
15 5 0.22
16 11 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATATTATTATTAAA
Found at i:121590893 original size:19 final size:21
Alignment explanation
Indices: 121590860--121590908 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 21
121590850 TATATTTTAA
121590860 ATATT-TTATTATTAA-AT-T
1 ATATTATTATTATTAATATAT
*
121590878 ATATTATTATTCTTAATATAT
1 ATATTATTATTATTAATATAT
121590899 ATATTTATTA
1 ATA-TTATTA
121590909 ACATTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 2 0.08
21 4 0.15
22 6 0.23
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTATTATTATTAATATAT
Found at i:121594208 original size:22 final size:22
Alignment explanation
Indices: 121594162--121594208 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
121594152 ATTGAACTAT
* *
121594162 TTGAAAGTTTTCATTTAAGTCA
1 TTGAAAGTTTTCATTTAAATAA
121594184 TTGAAAGTGTTT-ATTTAAATAA
1 TTGAAAGT-TTTCATTTAAATAA
121594206 TTG
1 TTG
121594209 GACTGTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (22 bp):
TTGAAAGTTTTCATTTAAATAA
Found at i:121594503 original size:10 final size:11
Alignment explanation
Indices: 121594480--121594504 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
121594470 TTGATAATCA
121594480 TTTTATAACTT
1 TTTTATAACTT
121594491 TTTTATAACTT
1 TTTTATAACTT
121594502 TTT
1 TTT
121594505 GAAATTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTATAACTT
Found at i:121597025 original size:29 final size:29
Alignment explanation
Indices: 121596961--121597028 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 29
121596951 TGGAAAGTAA
121596961 GACTAAATTCCTAAAAATAAATGTATAGG
1 GACTAAATTCCTAAAAATAAATGTATAGG
121596990 GAACTAAATTCCTAAAAATAAATGTATAGG
1 G-ACTAAATTCCTAAAAATAAATGTATAGG
121597020 GACTAAATT
1 GACTAAATT
121597029 TCAAATGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 9 0.24
30 29 0.76
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (29 bp):
GACTAAATTCCTAAAAATAAATGTATAGG
Found at i:121597432 original size:16 final size:16
Alignment explanation
Indices: 121597411--121597444 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
121597401 TAGTCCTACC
*
121597411 CTCCCAATTGCCACCT
1 CTCCCAACTGCCACCT
121597427 CTCCCAACTGCCACCT
1 CTCCCAACTGCCACCT
121597443 CT
1 CT
121597445 ATGACACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.53, G:0.06, T:0.24
Consensus pattern (16 bp):
CTCCCAACTGCCACCT
Found at i:121607237 original size:30 final size:31
Alignment explanation
Indices: 121607201--121607264 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
121607191 ACTTAACAAG
*
121607201 CAAATGT-TTCTAAAATAAT-AACAAAATTAA
1 CAAATGTCTT-TAAAATAATAAAAAAAATTAA
121607231 CAAATGTCTTTAAAATAATAAAAAAAATTAA
1 CAAATGTCTTTAAAATAATAAAAAAAATTAA
121607262 CAA
1 CAA
121607265 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.59, C:0.09, G:0.03, T:0.28
Consensus pattern (31 bp):
CAAATGTCTTTAAAATAATAAAAAAAATTAA
Found at i:121607319 original size:22 final size:22
Alignment explanation
Indices: 121607294--121607336 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
121607284 TATCCAGACA
121607294 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
121607316 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
121607337 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:121607340 original size:11 final size:11
Alignment explanation
Indices: 121607301--121607341 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
121607291 ACAATAACAA
121607301 CAAAATAGTAG
1 CAAAATAGTAG
* *
121607312 CAACATAATAG
1 CAAAATAGTAG
*
121607323 TAAAATAGTAG
1 CAAAATAGTAG
121607334 CAAAATAG
1 CAAAATAG
121607342 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:121607349 original size:22 final size:22
Alignment explanation
Indices: 121607302--121607351 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
121607292 CAATAACAAC
* *
121607302 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
121607324 AAAATAGTAGCAAAATAGAGAG-
1 AAAATAGTAGCAAAATA-AGAGT
121607346 AAAATA
1 AAAATA
121607352 ATAAGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:121609515 original size:21 final size:20
Alignment explanation
Indices: 121609491--121609534 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 20
121609481 TAAAAGGTCA
121609491 TTCCTAAAAAGAAAAAAATCT
1 TTCCTAAAAAG-AAAAAATCT
121609512 TTCCTAAAAAGAAAAAATCT
1 TTCCTAAAAAGAAAAAATCT
121609532 TTC
1 TTC
121609535 TTTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.27
Consensus pattern (20 bp):
TTCCTAAAAAGAAAAAATCT
Found at i:121611844 original size:15 final size:15
Alignment explanation
Indices: 121611796--121611844 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
121611786 AAAATGCATA
*
121611796 TATTTTTATAAATAC
1 TATTTTTATAAATTC
*
121611811 -ATTTTTATATAATTT
1 TATTTTTATA-AATTC
*
121611826 TATTTATATAAATTC
1 TATTTTTATAAATTC
121611841 TATT
1 TATT
121611845 ATTGGATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 9 0.32
15 11 0.39
16 8 0.29
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTTTATAAATTC
Found at i:121612589 original size:19 final size:20
Alignment explanation
Indices: 121612560--121612597 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
121612550 TAATTACACC
*
121612560 AAAATTAAAATTTATATATT
1 AAAATTAAAATTTACATATT
121612580 AAAA-TAAAATTTACATAT
1 AAAATTAAAATTTACATAT
121612598 AAATTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTAAAATTTACATATT
Found at i:121621976 original size:24 final size:23
Alignment explanation
Indices: 121621945--121621992 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 23
121621935 TATAAGAATC
121621945 ATTAATAAT-TAGCTTAATTTATT
1 ATTAATAATATAG-TTAATTTATT
121621968 ATTATATAATATAGTTAATTTATT
1 ATTA-ATAATATAGTTAATTTATT
121621992 A
1 A
121621993 CGTGATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.17
24 16 0.70
25 3 0.13
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (23 bp):
ATTAATAATATAGTTAATTTATT
Found at i:121623852 original size:29 final size:31
Alignment explanation
Indices: 121623820--121623883 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
121623810 AAATATTTTT
*
121623820 TAAAATTAGA-TAAATATTAAATTT-ATATA
1 TAAAATTAGATTAAATATGAAATTTGATATA
* *
121623849 TAAACTTTGATTAAATATGAAATTTGATATA
1 TAAAATTAGATTAAATATGAAATTTGATATA
121623880 TAAA
1 TAAA
121623884 CTTTAATTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 8 0.27
30 13 0.43
31 9 0.30
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.41
Consensus pattern (31 bp):
TAAAATTAGATTAAATATGAAATTTGATATA
Found at i:121623864 original size:30 final size:31
Alignment explanation
Indices: 121623830--121623887 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
121623820 TAAAATTAGA
*
121623830 TAAATATTAAATTT-ATATATAAACTTTGAT
1 TAAATATGAAATTTGATATATAAACTTTGAT
121623860 TAAATATGAAATTTGATATATAAACTTT
1 TAAATATGAAATTTGATATATAAACTTT
121623888 AATTTGGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (31 bp):
TAAATATGAAATTTGATATATAAACTTTGAT
Found at i:121634059 original size:47 final size:45
Alignment explanation
Indices: 121633980--121634071 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 45
121633970 AGCTATTGTT
*
121633980 TAGATATTAATTTTTTATTACATTTTAAAATATTTTAATTTAATC
1 TAGATATTAATTTTTTATTACATTTTAAAATATTTTAATTGAATC
* * *
121634025 TAGATATTAGATTTTTTTGTTATATTTTATAATATTTTAATTGAATC
1 TAGATATTA-A-TTTTTTATTACATTTTAAAATATTTTAATTGAATC
121634072 CTTAATTTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 9 0.22
46 1 0.02
47 31 0.76
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (45 bp):
TAGATATTAATTTTTTATTACATTTTAAAATATTTTAATTGAATC
Found at i:121635845 original size:20 final size:19
Alignment explanation
Indices: 121635807--121635846 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
121635797 AGCCGAATAA
* *
121635807 AAATTTGATAGATTTTAAT
1 AAATTTGAAAGAATTTAAT
121635826 AAATTTGTAAAGAATTTAAT
1 AAATTTG-AAAGAATTTAAT
121635846 A
1 A
121635847 TAGTCGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (19 bp):
AAATTTGAAAGAATTTAAT
Found at i:121637239 original size:21 final size:20
Alignment explanation
Indices: 121637198--121637255 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 20
121637188 AAGTTTGTTT
121637198 AAAATAAAATATTAAATTTA
1 AAAATAAAATATTAAATTTA
121637218 AAAATAAAA-ATTATAATATTA
1 AAAATAAAATATTA-AAT-TTA
* *
121637239 AATATTTAAATATTAAA
1 AA-AATAAAATATTAAA
121637256 AACACTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 4 0.12
20 12 0.38
21 5 0.16
22 7 0.22
23 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATAAAATATTAAATTTA
Found at i:121637240 original size:15 final size:15
Alignment explanation
Indices: 121637211--121637257 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
121637201 ATAAAATATT
*
121637211 AAATTTAAA-AATAA
1 AAATTTAAATATTAA
121637225 AAA-TTATAATATTAA
1 AAATTTA-AATATTAA
*
121637240 ATATTTAAATATTAA
1 AAATTTAAATATTAA
121637255 AAA
1 AAA
121637258 CACTTTTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.11
14 5 0.19
15 16 0.59
16 3 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATTTAAATATTAA
Found at i:121637242 original size:7 final size:7
Alignment explanation
Indices: 121637204--121637255 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
121637194 GTTTAAAATA
121637204 AAATATT
1 AAATATT
121637211 AAAT-TT
1 AAATATT
*
121637217 AAA-AAT
1 AAATATT
*
121637223 AAAAATT
1 AAATATT
121637230 ATAATATT
1 A-AATATT
121637238 AAATATTT
1 AAATA-TT
121637246 AAATATT
1 AAATATT
121637253 AAA
1 AAA
121637256 AACACTTTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
6 9 0.24
7 16 0.42
8 13 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AAATATT
Found at i:121638290 original size:23 final size:21
Alignment explanation
Indices: 121638259--121638302 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
121638249 TGAATCAAAA
*
121638259 TTTTAAATATATATATTTTAATT
1 TTTTAAATAAAT-TA-TTTAATT
*
121638282 TTTTTAATAAATTATTTAATT
1 TTTTAAATAAATTATTTAATT
121638303 AAACCGAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTAAATAAATTATTTAATT
Found at i:121641793 original size:22 final size:21
Alignment explanation
Indices: 121641743--121641853 Score: 77
Period size: 22 Copynumber: 5.0 Consensus size: 21
121641733 CTAATTTACC
121641743 TATTA-TTATATTAAATAATTTAAA
1 TATTATTTATATT--AT-ATTT-AA
121641767 TATTATTTAGTATTATATTTAA
1 TATTATTTA-TATTATATTTAA
*
121641789 TATTATTCTATATT-TCATAT-A
1 TATTATT-TATATTAT-ATTTAA
*
121641810 TCATTATTT-TATTTTATTTAA
1 T-ATTATTTATATTATATTTAA
*
121641831 AATTTATTTATTATTATATTTAA
1 TA-TTATTTA-TATTATATTTAA
121641854 AATTTTAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 21
0.74 0.04 0.21
Matches are distributed among these distances:
20 8 0.11
21 12 0.16
22 22 0.30
23 17 0.23
24 7 0.10
25 3 0.04
26 4 0.05
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (21 bp):
TATTATTTATATTATATTTAA
Found at i:121641861 original size:31 final size:31
Alignment explanation
Indices: 121641743--121641861 Score: 73
Period size: 31 Copynumber: 3.7 Consensus size: 31
121641733 CTAATTTACC
*
121641743 TATTATTATA-TTAAATAATTT-AAATATTATT
1 TATTATTATATTTAAA-ATTTTAAAAT-TTATT
* * * * *
121641774 TAGTATTATATTTAATATTATTCTATATTTCATA
1 TATTATTATATTTAAAATT-TT-AAAATTT-ATT
* ***
121641808 TATCATTAT-TTTATTTTATTTAAAATTTATT
1 TATTATTATATTTAAAAT-TTTAAAATTTATT
121641839 TATTATTATATTTAAAATTTTAA
1 TATTATTATATTTAAAATTTTAA
121641862 CATATAAATA
Statistics
Matches: 65, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
31 26 0.40
32 16 0.25
33 10 0.15
34 13 0.20
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.58
Consensus pattern (31 bp):
TATTATTATATTTAAAATTTTAAAATTTATT
Found at i:121646206 original size:106 final size:107
Alignment explanation
Indices: 121646000--121646220 Score: 401
Period size: 106 Copynumber: 2.1 Consensus size: 107
121645990 ATACTAAAGC
* *
121646000 TATT-TGGTACATATGCCATACTGTATGAGATTACACAAGAAAGCATGCTTTTCCTTACAAAGTA
1 TATTATGGTACATACGCCATACTATATGAGATTACACAAGAAAGCATGCTTTTCCTTACAAAGTA
*
121646064 ACAGTTATTTGTACCCTCACTGTATTTGTATTTTAAATATTT
66 ACAGTTATTTGAACCCTCACTGTATTTGTATTTTAAATATTT
121646106 TATTATGGTACATACGCCATACTATATGAGATTACACAAGAAAGCATGCTTTT-CTTACAAAGTA
1 TATTATGGTACATACGCCATACTATATGAGATTACACAAGAAAGCATGCTTTTCCTTACAAAGTA
121646170 ACAGTTATTTGAACCCTCACTGTATTTGTATTTTAAATATTT
66 ACAGTTATTTGAACCCTCACTGTATTTGTATTTTAAATATTT
121646212 TATTATGGT
1 TATTATGGT
121646221 TAGCAATGTT
Statistics
Matches: 111, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
106 65 0.59
107 46 0.41
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (107 bp):
TATTATGGTACATACGCCATACTATATGAGATTACACAAGAAAGCATGCTTTTCCTTACAAAGTA
ACAGTTATTTGAACCCTCACTGTATTTGTATTTTAAATATTT
Found at i:121648216 original size:53 final size:53
Alignment explanation
Indices: 121648153--121648261 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
121648143 AAAAGTTAAA
121648153 CTTGTTTGCTTTCTGCTGTTGTTGTTGTTCCTTTGTTTGTAATCGTTTTGCCC
1 CTTGTTTGCTTTCTGCTGTTGTTGTTGTTCCTTTGTTTGTAATCGTTTTGCCC
121648206 CTTGTTTGCTTTCTGCTGTTGTTGTTGTTCCTTTGTTTGTAATCGTTTTGCCC
1 CTTGTTTGCTTTCTGCTGTTGTTGTTGTTCCTTTGTTTGTAATCGTTTTGCCC
121648259 CTT
1 CTT
121648262 CCCCCTCTGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.04, C:0.19, G:0.20, T:0.57
Consensus pattern (53 bp):
CTTGTTTGCTTTCTGCTGTTGTTGTTGTTCCTTTGTTTGTAATCGTTTTGCCC
Found at i:121648263 original size:27 final size:27
Alignment explanation
Indices: 121648180--121648263 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
121648170 GTTGTTGTTG
121648180 TTCCTTTGTTTGTAATCGTTTTGCCCC
1 TTCCTTTGTTTGTAATCGTTTTGCCCC
* * ** ***
121648207 TT-GTTTGCTTTCTGCT-GTTGTTG-TTG
1 TTCCTTTG-TTTGTAATCGTT-TTGCCCC
121648233 TTCCTTTGTTTGTAATCGTTTTGCCCC
1 TTCCTTTGTTTGTAATCGTTTTGCCCC
121648260 TTCC
1 TTCC
121648264 CCCTCTGTAA
Statistics
Matches: 38, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
26 17 0.45
27 21 0.55
ACGTcount: A:0.05, C:0.23, G:0.18, T:0.55
Consensus pattern (27 bp):
TTCCTTTGTTTGTAATCGTTTTGCCCC
Found at i:121660898 original size:173 final size:177
Alignment explanation
Indices: 121660508--121660953 Score: 482
Period size: 173 Copynumber: 2.5 Consensus size: 177
121660498 TATTATCATA
*
121660508 TCATTGATATGGTGTGTTTTAC--CGTTCTGAACCCCAGAGTGATAACATATTGTCAAACACGTT
1 TCATTGATATGGTGTGTTTTACTTTGTTCT-AACCCCAGAGTGATAACATATTGTCAAACACGTT
* * *
121660571 GAGTGCTCTTGGCTTATAAGGTCTGTGCATATGTTCATAGAATTCGGTGTATTGAGAGTCTACTG
65 GAGTGCTATTGGCTTAGAAGGTCCGTGCATATGTTCATAGAATTCGGTGTATTGAGAG--TAC-G
* * *
121660636 TATTTAATGGACGTATCATCATATCATCCATCCATCACGTTTAGAAGGTTT
127 TATTCAATGGACGCATCATCACATCATCCATCCATCACGTTTAGAAGGTTT
* * * *
121660687 T-GTTGATATGGTGTGTTTTACTTTGTTCAAAACCCCAGATTGATAACATATTGTCAAACATGTT
1 TCATTGATATGGTGTGTTTTACTTTGTTC-TAACCCCAGAGTGATAACATATTGTCAAACACG-T
* * * *
121660751 TGAGTGTTATTGGCTTAGAAGGTCCGTGTATATGTTCATAGAATTTGGTGTTTTG-G-G-A-GTA
64 TGAGTGCTATTGGCTTAGAAGGTCCGTGCATATGTTCATAGAATTCGGTGTATTGAGAGTACGTA
* ** *
121660812 TTCAATTGTTGCAT-TTC-CAT-AT-CATCCATCACGTTTAGAAGGTTTT
129 TTCAATGGACGCATCATCACATCATCCATCCATCACGTTTAGAAGG-TTT
* * **
121660858 CTCATTGATATGGTGTGTTTTACTTTGTTCTAAGCCCCAGAGTGATAGCATATTGTCAATCGTGT
1 -TCATTGATATGGTGTGTTTTACTTTGTTCTAA-CCCCAGAGTGATAACATATTGTCAAACACGT
** * * *
121660923 TGAACGCTTTTGGGTTATAAGGTCCGTGCAT
64 TGAGTGCTATTGGCTTAGAAGGTCCGTGCAT
121660954 GTCAACATTG
Statistics
Matches: 227, Mismatches: 32, Indels: 23
0.80 0.11 0.08
Matches are distributed among these distances:
170 20 0.09
171 5 0.02
172 30 0.13
173 54 0.24
174 12 0.05
176 1 0.00
178 19 0.08
179 2 0.01
180 35 0.15
181 49 0.22
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (177 bp):
TCATTGATATGGTGTGTTTTACTTTGTTCTAACCCCAGAGTGATAACATATTGTCAAACACGTTG
AGTGCTATTGGCTTAGAAGGTCCGTGCATATGTTCATAGAATTCGGTGTATTGAGAGTACGTATT
CAATGGACGCATCATCACATCATCCATCCATCACGTTTAGAAGGTTT
Found at i:121663060 original size:120 final size:120
Alignment explanation
Indices: 121662898--121663149 Score: 317
Period size: 120 Copynumber: 2.1 Consensus size: 120
121662888 GTGGGCAGTG
* * *
121662898 GCAGTGGCAGTGGCAGCTCCTTGGTTGGTAGAGTCTCCGTCTTCACCCCATGGGGAGCAGCTTTT
1 GCAGTGGCAGTGGCAGCTCCTTGGTTGGTAGAGCCTCCGTCTTCACCCCATGAGGAGCAGCTTTC
* * * *
121662963 TGATGGAGCCGCAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAACCCCACCT
66 CGATGGAGCCACAGTTCCACTTACATTGCTCAAGGCTTGAGACCGAACCCCACCT
* * * * *
121663018 GCAGTGGCATTGGCAGCTCCTCT-GTTGGTAGAGCCTCTGTCTTCATCCCATGATGAGCTGCTTT
1 GCAGTGGCAGTGGCAGCTCCT-TGGTTGGTAGAGCCTCCGTCTTCACCCCATGAGGAGCAGCTTT
* * * * *
121663082 CCGCTGGTGCCACAGTTCCACTTACATTGCTGAAGGCTTGAGACCGAAGCCCATCT
65 CCGATGGAGCCACAGTTCCACTTACATTGCTCAAGGCTTGAGACCGAACCCCACCT
* *
121663138 CCAGTGGTAGTG
1 GCAGTGGCAGTG
121663150 ACATTGGCAT
Statistics
Matches: 111, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
120 110 0.99
121 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.27, T:0.27
Consensus pattern (120 bp):
GCAGTGGCAGTGGCAGCTCCTTGGTTGGTAGAGCCTCCGTCTTCACCCCATGAGGAGCAGCTTTC
CGATGGAGCCACAGTTCCACTTACATTGCTCAAGGCTTGAGACCGAACCCCACCT
Found at i:121663270 original size:138 final size:132
Alignment explanation
Indices: 121663019--121663665 Score: 554
Period size: 132 Copynumber: 4.9 Consensus size: 132
121663009 ACCCCACCTG
* * * * * * * *
121663019 CAGTGGCATTGGCAGCTCCT-CTGTTGGTAGAGCCTCTGTCTTCATCCCATGATGAGCTGCTTTC
1 CAGTGGCATTGGAAGCT-CTGCAGGTGGTAGAGCCCCAGTCTTCATCCCATGCTGGGCTGCTTTT
* * * * * * *
121663083 CGCTGGTGCCACAGTTCCACTTACATTGCTGAAGGCTTGAGACCGAAGCCCATCTCCAGTGGTAG
65 TGCTAGAGCCACAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAAGCCCATCTGCAGTGGTAG
121663148 TGA
130 TGA
* * *
121663151 CATTGGCATTGGCATTAGCAGCTCTGCAGGTGGTAGAGCCCCAGTTTTCATCCCATGCTGGGCCG
1 CAGTGGCATTGG----A--AGCTCTGCAGGTGGTAGAGCCCCAGTCTTCATCCCATGCTGGGCTG
* * * * *
121663216 CTTTTTGCTAGAGCCACAGTTCCACTTGTATAGCTCAAGGCTTGAGATTGAAGCCCATCTGCGGC
60 CTTTTTGCTAGAGCCACAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAAGCCCATCTGCAGT
*
121663281 GGTAGTGG
125 GGTAGTGA
* * * * * * *
121663289 TAGTGGCATTGGAAGTTCTGCTGGAGGTAGAGCCCCACTCTTCATCCCATTCTGGGTTGCTTTTT
1 CAGTGGCATTGGAAGCTCTGCAGGTGGTAGAGCCCCAGTCTTCATCCCATGCTGGGCTGCTTTTT
* * * *
121663354 GC-AGGAGCCACAGCTCCACTTGCGTTGCTCAAGGCTTGAGACTGAATCCCATTTGCAGT-G--G
66 GCTA-GAGCCACAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAAGCCCATCTGCAGTGGTAG
121663415 T--
130 TGA
** * * * * *
121663416 -AGTGGC------AGCTCCACTGTTGGCAGAGCCCCACTCTTCGTCCCATGCTGGGCTGCTTTTT
1 CAGTGGCATTGGAAGCTCTGCAGGTGGTAGAGCCCCAGTCTTCATCCCATGCTGGGCTGCTTTTT
* * * ** *
121663474 GCCAGAGCCACGGCTCCACTTGTGTTGCTCAAGGCTTGAGACTGAATCCCATCTGCAGTGGTAGT
66 GCTAGAGCCACAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAAGCCCATCTGCAGTGGTAGT
*
121663539 GG
131 GA
* * * * *
121663541 CAGTGGCATTGGCAGCTCCT-C-TGTGGGCAGAGCCCCAGGCTTCATCCCACGCTGGGCTGCTTT
1 CAGTGGCATTGGAAGCT-CTGCAGGT-GGTAGAGCCCCAGTCTTCATCCCATGCTGGGCTGCTTT
** **
121663604 TTGCCGGAGCCACAGTTCCACTTGCATTGCTCAACACTTGAGACTGAAGCCCAT-TGGCAGTG
64 TTGCTAGAGCCACAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAAGCCCATCT-GCAGTG
121663666 ACAGCATGTT
Statistics
Matches: 421, Mismatches: 70, Indels: 48
0.78 0.13 0.09
Matches are distributed among these distances:
120 97 0.23
121 2 0.00
123 2 0.00
126 12 0.03
129 2 0.00
131 4 0.01
132 194 0.46
133 1 0.00
134 1 0.00
137 2 0.00
138 104 0.25
ACGTcount: A:0.18, C:0.28, G:0.27, T:0.27
Consensus pattern (132 bp):
CAGTGGCATTGGAAGCTCTGCAGGTGGTAGAGCCCCAGTCTTCATCCCATGCTGGGCTGCTTTTT
GCTAGAGCCACAGTTCCACTTGCATTGCTCAAGGCTTGAGACTGAAGCCCATCTGCAGTGGTAGT
GA
Found at i:121663494 original size:252 final size:252
Alignment explanation
Indices: 121663185--121663665 Score: 669
Period size: 252 Copynumber: 1.9 Consensus size: 252
121663175 TGCAGGTGGT
* * * *
121663185 AGAGCCCCAGTTTTCATCCCATGCTGGGCCGCTTTTTGCTAGAGCCACAGTTCCACTTGTATAGC
1 AGAGCCCCACTCTTCATCCCATGCTGGGCCGCTTTTTGCCAGAGCCACAGCTCCACTTGTATAGC
* * * *
121663250 TCAAGGCTTGAGATTGAAGCCCATCTGCGGCGGTAGTGGTAGTGGCATTGGAAG-TTCTGCTG-G
66 TCAAGGCTTGAGACTGAAGCCCATCTGCAGCGGTAGTGGCAGTGGCATTGGAAGCTCCT-CTGTG
* * ** * *
121663313 AGGTAGAGCCCCACTCTTCATCCCATTCTGGGTTGCTTTTTGCAGGAGCCACAGCTCCACTTGCG
130 -GGCAGAGCCCCACGCTTCATCCCACGCTGGGCTGCTTTTTGCAGGAGCCACAGCTCCACTTGCA
** * *
121663378 TTGCTCAAGGCTTGAGACTGAATCCCATTTGCAGTGGTAGTGGCAGCTCCACTGTTGGC
194 TTGCTCAACACTTGAGACTGAAGCCCATTGGCAGTGGTAGTGGCAGCTCCACTGTTGGC
* * * * *
121663437 AGAGCCCCACTCTTCGTCCCATGCTGGGCTGCTTTTTGCCAGAGCCACGGCTCCACTTGTGTTGC
1 AGAGCCCCACTCTTCATCCCATGCTGGGCCGCTTTTTGCCAGAGCCACAGCTCCACTTGTATAGC
* * *
121663502 TCAAGGCTTGAGACTGAATCCCATCTGCAGTGGTAGTGGCAGTGGCATTGGCAGCTCCTCTGTGG
66 TCAAGGCTTGAGACTGAAGCCCATCTGCAGCGGTAGTGGCAGTGGCATTGGAAGCTCCTCTGTGG
* * *
121663567 GCAGAGCCCCAGGCTTCATCCCACGCTGGGCTGCTTTTTGCCGGAGCCACAGTTCCACTTGCATT
131 GCAGAGCCCCACGCTTCATCCCACGCTGGGCTGCTTTTTGCAGGAGCCACAGCTCCACTTGCATT
121663632 GCTCAACACTTGAGACTGAAGCCCATTGGCAGTG
196 GCTCAACACTTGAGACTGAAGCCCATTGGCAGTG
121663666 ACAGCATGTT
Statistics
Matches: 198, Mismatches: 29, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
252 194 0.98
253 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.27, T:0.27
Consensus pattern (252 bp):
AGAGCCCCACTCTTCATCCCATGCTGGGCCGCTTTTTGCCAGAGCCACAGCTCCACTTGTATAGC
TCAAGGCTTGAGACTGAAGCCCATCTGCAGCGGTAGTGGCAGTGGCATTGGAAGCTCCTCTGTGG
GCAGAGCCCCACGCTTCATCCCACGCTGGGCTGCTTTTTGCAGGAGCCACAGCTCCACTTGCATT
GCTCAACACTTGAGACTGAAGCCCATTGGCAGTGGTAGTGGCAGCTCCACTGTTGGC
Found at i:121666461 original size:22 final size:22
Alignment explanation
Indices: 121666427--121666478 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
121666417 AAGTTTGAAC
121666427 ATATTTGTAGGAATATTCTGTAA
1 ATATTT-TAGGAATATTCTGTAA
* *
121666450 ATATTTTAGGAATATTTTGTAG
1 ATATTTTAGGAATATTCTGTAA
121666472 ATATTTT
1 ATATTTT
121666479 CTTTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (22 bp):
ATATTTTAGGAATATTCTGTAA
Found at i:121666463 original size:11 final size:12
Alignment explanation
Indices: 121666427--121666471 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 12
121666417 AAGTTTGAAC
121666427 ATATTTGTAGGA
1 ATATTTGTAGGA
121666439 ATATTCTGTA--A
1 ATATT-TGTAGGA
121666450 ATATTT-TAGGA
1 ATATTTGTAGGA
121666461 ATATTTTGTAG
1 ATA-TTTGTAG
121666472 ATATTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
9 2 0.07
10 1 0.04
11 10 0.36
12 8 0.29
13 7 0.25
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (12 bp):
ATATTTGTAGGA
Found at i:121669487 original size:22 final size:22
Alignment explanation
Indices: 121669459--121669503 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
121669449 AGGGGGAGTG
121669459 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
121669481 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
121669503 T
1 T
121669504 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:121670583 original size:13 final size:14
Alignment explanation
Indices: 121670567--121670602 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
121670557 CAATCTCATA
121670567 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
121670580 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
121670593 TCTC-ATTTCA
1 TCTCAATTTCA
121670603 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Done.