Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 368 of 373
Found at i:121670592 original size:18 final size:19
Alignment explanation
Indices: 121670554--121670594 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
121670544 TGGTTCACGT
121670554 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
121670573 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
121670591 TTTC
1 TTTC
121670595 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:121671118 original size:18 final size:19
Alignment explanation
Indices: 121671092--121671130 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
121671082 TTTCAATTCA
121671092 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
121671111 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
121671129 AT
1 AT
121671131 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:121672456 original size:5 final size:5
Alignment explanation
Indices: 121672446--121672502 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
121672436 TTACTTATTT
* *
121672446 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
121672494 ATAT- ATATA
1 ATATA ATATA
121672503 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:121672462 original size:12 final size:12
Alignment explanation
Indices: 121672445--121672500 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
121672435 TTTACTTATT
121672445 TATATAATATAA
1 TATATAATATAA
121672457 TATATAATATAATA
1 TATATAATAT-A-A
121672471 TACTATAATATAA
1 TA-TATAATATAA
*
121672484 TA-ATAATTTAA
1 TATATAATATAA
121672495 TATATA
1 TATATA
121672501 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:121672515 original size:26 final size:26
Alignment explanation
Indices: 121672447--121672502 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
121672437 TACTTATTTA
*
121672447 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
121672474 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
121672499 TATA
1 TATA
121672503 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:121677156 original size:12 final size:12
Alignment explanation
Indices: 121677139--121677165 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
121677129 TAGTCGTAGA
121677139 AATTAGGAAAAC
1 AATTAGGAAAAC
121677151 AATTAGGAAAAC
1 AATTAGGAAAAC
121677163 AAT
1 AAT
121677166 CTTAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.19
Consensus pattern (12 bp):
AATTAGGAAAAC
Found at i:121679816 original size:7 final size:7
Alignment explanation
Indices: 121679804--121679833 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
121679794 TCTCTCTCTC
121679804 TCTGTTT
1 TCTGTTT
121679811 TCTGTTT
1 TCTGTTT
121679818 TCTGTTT
1 TCTGTTT
121679825 TCTGTTT
1 TCTGTTT
121679832 TC
1 TC
121679834 CTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.13, T:0.70
Consensus pattern (7 bp):
TCTGTTT
Found at i:121679846 original size:21 final size:21
Alignment explanation
Indices: 121679804--121679846 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
121679794 TCTCTCTCTC
*
121679804 TCTGTTTTCTGTTTTCTGTTT
1 TCTGTTTTCTGTTTTCTCTTT
*
121679825 TCTGTTTTCCT-TTTTTTCTTT
1 TCTGTTTT-CTGTTTTCTCTTT
121679846 T
1 T
121679847 TTATTTCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.00, C:0.16, G:0.09, T:0.74
Consensus pattern (21 bp):
TCTGTTTTCTGTTTTCTCTTT
Found at i:121681813 original size:27 final size:27
Alignment explanation
Indices: 121681783--121681837 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
121681773 ATTTATAAAG
*
121681783 TAAAACATCAAATAATGTTGTAAATTT
1 TAAAACACCAAATAATGTTGTAAATTT
121681810 TAAAACACCAAATAATGTTGTAAATTT
1 TAAAACACCAAATAATGTTGTAAATTT
121681837 T
1 T
121681838 TAGTATGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.36
Consensus pattern (27 bp):
TAAAACACCAAATAATGTTGTAAATTT
Found at i:121682982 original size:10 final size:10
Alignment explanation
Indices: 121682967--121683008 Score: 84
Period size: 10 Copynumber: 4.2 Consensus size: 10
121682957 CCTTAAATGG
121682967 TCAACCCAAC
1 TCAACCCAAC
121682977 TCAACCCAAC
1 TCAACCCAAC
121682987 TCAACCCAAC
1 TCAACCCAAC
121682997 TCAACCCAAC
1 TCAACCCAAC
121683007 TC
1 TC
121683009 TCCTCTCCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12
Consensus pattern (10 bp):
TCAACCCAAC
Found at i:121688761 original size:24 final size:24
Alignment explanation
Indices: 121688710--121688777 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
121688700 CTTTTTCCTT
* *
121688710 GTTTTTA-ATTTTTATATATTT-TA
1 GTTTTTATAATTTAATAT-TTTATA
121688733 G-TTTTATAATTTAATATTTTATA
1 GTTTTTATAATTTAATATTTTATA
*
121688756 GTTTTTGTAATTTAAT-TTTTAT
1 GTTTTTATAATTTAATATTTTAT
121688778 TTCATAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
22 8 0.21
23 18 0.46
24 13 0.33
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (24 bp):
GTTTTTATAATTTAATATTTTATA
Found at i:121690291 original size:23 final size:23
Alignment explanation
Indices: 121690265--121690332 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
121690255 TGATTTTTAA
121690265 AAAGATATTTATGTTCTAAATTT
1 AAAGATATTTATGTTCTAAATTT
* *
121690288 AAAG-TATGTGAT-TT-TTAA---
1 AAAGATAT-TTATGTTCTAAATTT
121690306 AAAGATATTTATGTTCTAAATTT
1 AAAGATATTTATGTTCTAAATTT
121690329 AAAG
1 AAAG
121690333 TTTCCACGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
18 7 0.21
19 5 0.15
20 3 0.09
21 3 0.09
22 5 0.15
23 11 0.32
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (23 bp):
AAAGATATTTATGTTCTAAATTT
Found at i:121690296 original size:41 final size:41
Alignment explanation
Indices: 121690250--121690333 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
121690240 TTATTTATTT
121690250 GTATGTGATTTTTAAAAAGATATTTATGTTCTAAATTTAAA
1 GTATGTGATTTTTAAAAAGATATTTATGTTCTAAATTTAAA
121690291 GTATGTGATTTTTAAAAAGATATTTATGTTCTAAATTTAAA
1 GTATGTGATTTTTAAAAAGATATTTATGTTCTAAATTTAAA
121690332 GT
1 GT
121690334 TTCCACGTGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (41 bp):
GTATGTGATTTTTAAAAAGATATTTATGTTCTAAATTTAAA
Found at i:121691311 original size:17 final size:19
Alignment explanation
Indices: 121691291--121691331 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
121691281 ATAATTTTAG
*
121691291 AAAATATA-T-AATACATC
1 AAAATATACTAAAAACATC
121691308 AAAA-ATACTAAAAACATC
1 AAAATATACTAAAAACATC
121691326 AAAATA
1 AAAATA
121691332 AATATTTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 5 0.25
18 11 0.55
19 1 0.05
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATATACTAAAAACATC
Found at i:121691449 original size:30 final size:30
Alignment explanation
Indices: 121691414--121691475 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
121691404 CTTAACAAGT
121691414 AAATGTCTCTAAAACAATAACAAAATTAAC
1 AAATGTCTCTAAAACAATAACAAAATTAAC
* * *
121691444 AAATGTCTTTAAAATAATAATAAAATTAAC
1 AAATGTCTCTAAAACAATAACAAAATTAAC
121691474 AA
1 AA
121691476 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATGTCTCTAAAACAATAACAAAATTAAC
Found at i:121692046 original size:297 final size:298
Alignment explanation
Indices: 121691633--121692222 Score: 1137
Period size: 297 Copynumber: 2.0 Consensus size: 298
121691623 CGGGGCTGGG
*
121691633 CCAAAAATGTCTTACTCGAGGCCCGTTTGTTTTTAAATGGGCCTTATTTTTTTGTCCAAACTCAT
1 CCAAAAATGTCTTACCCGAGGCCCGTTTGTTTTTAAATGGGCCTTATTTTTTTGTCCAAACTCAT
*
121691698 TTTTCGAGCCTATATTTTTGCCCAAATCCTCCCACATTTTGGGCAGGCATTCACCTCTAAATAAA
66 TTTTCGAGCCTATATTTTTGCCCAAATCCTCCCACATTTTGGGCAGGCATTCAACTCTAAATAAA
*
121691763 ATTAAGATAGATGCAACTTAACAAGTAAATGTCTTTAAAATAATAACAAAATTAACAATAAAACA
131 ATTAAGATAGATGCAACTTAACAAGTAAATGTATTTAAAATAATAACAAAATTAACAATAAAACA
121691828 AGTTTTATACAATATCCAAACAATAAAATAGTAATAACATAATAGTAACATAGTAGCAAAATAGA
196 AGTTTTATACAATATCCAAACAATAAAATAGTAATAACATAATAGTAACATAGTAGCAAAATAGA
121691893 GAG-AAAAAATAAGAAAAAAATATTAAAAAAATCCAGC
261 GAGAAAAAAATAAGAAAAAAATATTAAAAAAATCCAGC
121691930 CCAAAAATGTCTTACCCGAGGCCCGTTTGTTTTTAAATGGGCCTTATTTTTTTGTCCAAACTCAT
1 CCAAAAATGTCTTACCCGAGGCCCGTTTGTTTTTAAATGGGCCTTATTTTTTTGTCCAAACTCAT
*
121691995 TTTTCGAGCCTATATTTTTGCCCAAATCCTCCCACATTTTGGGCGGGCATTCAACTCTAAATAAA
66 TTTTCGAGCCTATATTTTTGCCCAAATCCTCCCACATTTTGGGCAGGCATTCAACTCTAAATAAA
121692060 ATTAAGATAGATGCAACTTAACAAGTAAATGTATTTAAAATAATAACAAAATTAACAATAAAACA
131 ATTAAGATAGATGCAACTTAACAAGTAAATGTATTTAAAATAATAACAAAATTAACAATAAAACA
121692125 AGTTTTATACAATATCCAAACAATAAAATAGTAATAACATAATAGTAACATAGTAGCAAAATAGA
196 AGTTTTATACAATATCCAAACAATAAAATAGTAATAACATAATAGTAACATAGTAGCAAAATAGA
121692190 GAGAAAAAAATAAGAAAAAAATATTAAAAAAAT
261 GAGAAAAAAATAAGAAAAAAATATTAAAAAAAT
121692223 AGATTTTTTT
Statistics
Matches: 288, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
297 259 0.90
298 29 0.10
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (298 bp):
CCAAAAATGTCTTACCCGAGGCCCGTTTGTTTTTAAATGGGCCTTATTTTTTTGTCCAAACTCAT
TTTTCGAGCCTATATTTTTGCCCAAATCCTCCCACATTTTGGGCAGGCATTCAACTCTAAATAAA
ATTAAGATAGATGCAACTTAACAAGTAAATGTATTTAAAATAATAACAAAATTAACAATAAAACA
AGTTTTATACAATATCCAAACAATAAAATAGTAATAACATAATAGTAACATAGTAGCAAAATAGA
GAGAAAAAAATAAGAAAAAAATATTAAAAAAATCCAGC
Found at i:121695180 original size:42 final size:43
Alignment explanation
Indices: 121695121--121695213 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 43
121695111 GCTGGTTAAC
* *
121695121 AAGTGTTTGTGGAAATGTCA-C-TGAGGTTAATATA-ATCAATAA
1 AAGTGTTTGTGAAAATGTCACCGTGA-GTT-ATAAAGATCAATAA
121695163 AAGTGTTTGTGAAAATGTCACCGTGAGTTATAAAGATCAATAA
1 AAGTGTTTGTGAAAATGTCACCGTGAGTTATAAAGATCAATAA
121695206 AA-TGTTTG
1 AAGTGTTTG
121695214 CTACTGCTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
42 29 0.63
43 14 0.30
44 3 0.07
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (43 bp):
AAGTGTTTGTGAAAATGTCACCGTGAGTTATAAAGATCAATAA
Found at i:121703267 original size:191 final size:191
Alignment explanation
Indices: 121702943--121703350 Score: 565
Period size: 191 Copynumber: 2.1 Consensus size: 191
121702933 ACCTTCAGAT
* *
121702943 GTTCAAAGGCCAAAATGAACCTACTTGTCACATTCAAGTACCAAAGTGAACCTAATTACCATAAA
1 GTTCAAAGACCAAAATGAACCTAATTGTCACATTCAAGTACCAAAGTGAACCTAATTACCATAAA
* * **
121703008 ATTGACAACTAAATCCATTTTGATCCTTGCAATTAACAAATGTATACGTTCAATGACGTAACACT
66 ATTGACAACTAAATCCATTTTGATCCTTGAAATTAACAAATGCATAAATTCAATGACGTAACACT
* *
121703073 ATAAGATTGTACC-CTGTCATCACCTTTAGGTGTCACATTATCAAACTTTGATGAAATACAA
131 ATAAGATTGTACCAGT-TCATCACCTTTAGGAGTCACATTATCAAACTTTGATGAAATACAA
* * *
121703134 GTTCAAAGACCAAAATGAGCCTAATTGTCA-AGTTC-AGATACCAAAGTGAACCTACTTGCCAT-
1 GTTCAAAGACCAAAATGAACCTAATTGTCACA-TTCAAG-TACCAAAGTGAACCTAATTACCATA
* * * *
121703196 AAATGTGACAACTAAATCCATTTTGA-CACTTGAAATTGACAAATGCATAAATTTAATGATGTGA
64 AAAT-TGACAACTAAATCCATTTTGATC-CTTGAAATTAACAAATGCATAAATTCAATGACGTAA
* *
121703260 CACTATAAGATTGTACCAGTTCATCACCTTTAGGAGTCACATTATCAAATTTTGATGAAATTCAA
127 CACTATAAGATTGTACCAGTTCATCACCTTTAGGAGTCACATTATCAAACTTTGATGAAATACAA
* *
121703325 GTTCAAACACCAAAATGAACATAATT
1 GTTCAAAGACCAAAATGAACCTAATT
121703351 ACCATAAACT
Statistics
Matches: 192, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
190 8 0.04
191 183 0.95
192 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (191 bp):
GTTCAAAGACCAAAATGAACCTAATTGTCACATTCAAGTACCAAAGTGAACCTAATTACCATAAA
ATTGACAACTAAATCCATTTTGATCCTTGAAATTAACAAATGCATAAATTCAATGACGTAACACT
ATAAGATTGTACCAGTTCATCACCTTTAGGAGTCACATTATCAAACTTTGATGAAATACAA
Found at i:121703426 original size:160 final size:160
Alignment explanation
Indices: 121703161--121703458 Score: 406
Period size: 160 Copynumber: 1.9 Consensus size: 160
121703151 AGCCTAATTG
* * * * * *
121703161 TCAAGTTCAGATACCAAAGTGAACCTACTTGCCATAAATGTGACAACTAAATCCATTTTGACACT
1 TCAAGTTCAAACACCAAAATGAACATAATTACCATAAATGTGACAACTAAATCCATTTTGACACT
* * **
121703226 TGAAATTGACAAATGCATAAATTTAATGATGTGACACTATAAGATTGTACCA-GTTCATCACCTT
66 TCAAATTGACAAATGCATAAATTAAATGACATGACACTATAAGATTGTACCATG-TCATCACCTT
121703290 TAGGAGTCACATTATCAAATTTTGATGAAAT
130 TAGGAGTCACATTATCAAATTTTGATGAAAT
121703321 TCAAGTTCAAACACCAAAATGAACATAATTACCATAAACT-TGACAACTAAATCCATTTTGATC-
1 TCAAGTTCAAACACCAAAATGAACATAATTACCATAAA-TGTGACAACTAAATCCATTTTGA-CA
* * *
121703384 C-TCAAATTTGACAAATGTATAAGTTAAATGACATGGCACTATAAGATTGTACCATGTCATCACC
64 CTTCAAA-TTGACAAATGCATAAATTAAATGACATGACACTATAAGATTGTACCATGTCATCACC
*
121703448 TTTAGGTGTCA
128 TTTAGGAGTCA
121703459 GTTATCTTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
159 4 0.03
160 113 0.94
161 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (160 bp):
TCAAGTTCAAACACCAAAATGAACATAATTACCATAAATGTGACAACTAAATCCATTTTGACACT
TCAAATTGACAAATGCATAAATTAAATGACATGACACTATAAGATTGTACCATGTCATCACCTTT
AGGAGTCACATTATCAAATTTTGATGAAAT
Found at i:121705281 original size:13 final size:13
Alignment explanation
Indices: 121705265--121705291 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
121705255 TGATATCTAA
121705265 ATTTGATAAAAAT
1 ATTTGATAAAAAT
121705278 ATTTGATAAAAAT
1 ATTTGATAAAAAT
121705291 A
1 A
121705292 AAGTTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (13 bp):
ATTTGATAAAAAT
Found at i:121705329 original size:17 final size:17
Alignment explanation
Indices: 121705309--121705341 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
121705299 ATAAATGCAA
121705309 TATCTAAATATAAATAG
1 TATCTAAATATAAATAG
*
121705326 TATCTAAATATTAATA
1 TATCTAAATATAAATA
121705342 TGGTGAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (17 bp):
TATCTAAATATAAATAG
Found at i:121707206 original size:3 final size:3
Alignment explanation
Indices: 121707198--121707228 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
121707188 TAAATACATG
121707198 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121707229 AAGGAGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:121707855 original size:13 final size:14
Alignment explanation
Indices: 121707824--121707855 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
121707814 ATTCGTGATA
121707824 TAAATTTAATATTG
1 TAAATTTAATATTG
121707838 T-AATTTAATATT-
1 TAAATTTAATATTG
121707850 TAAATT
1 TAAATT
121707856 ATTATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.06
13 15 0.88
14 1 0.06
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
TAAATTTAATATTG
Found at i:121713641 original size:12 final size:12
Alignment explanation
Indices: 121713624--121713686 Score: 65
Period size: 12 Copynumber: 5.3 Consensus size: 12
121713614 GAAAACACCA
*
121713624 TATATATGTATG
1 TATATATATATG
121713636 TATATATATATG
1 TATATATATATG
*
121713648 TACATATATATG
1 TATATATATATG
* * *
121713660 TATGTATGTATA
1 TATATATATATG
*
121713672 TATATA-AAATG
1 TATATATATATG
121713683 TATA
1 TATA
121713687 AACTGTGTGT
Statistics
Matches: 41, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
11 6 0.15
12 35 0.85
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (12 bp):
TATATATATATG
Found at i:121713644 original size:16 final size:16
Alignment explanation
Indices: 121713623--121713677 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
121713613 AGAAAACACC
121713623 ATATATATGTATGTAT
1 ATATATATGTATGTAT
**
121713639 ATATATATGTACATAT
1 ATATATATGTATGTAT
*
121713655 ATATGTATGTATGTAT
1 ATATATATGTATGTAT
121713671 ATATATA
1 ATATATA
121713678 AAATGTATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (16 bp):
ATATATATGTATGTAT
Found at i:121714739 original size:22 final size:19
Alignment explanation
Indices: 121714714--121714761 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
121714704 ACTCAACTAT
121714714 CAAATTTAAAAATTTGAAGAAC
1 CAAATTTAAAAA-TTG-A-AAC
*
121714736 CAAA-TTGAAAATTGAAAC
1 CAAATTTAAAAATTGAAAC
121714754 CAAATTTA
1 CAAATTTA
121714762 GATACCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 7 0.30
19 3 0.13
20 3 0.13
21 6 0.26
22 4 0.17
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.27
Consensus pattern (19 bp):
CAAATTTAAAAATTGAAAC
Found at i:121718815 original size:21 final size:21
Alignment explanation
Indices: 121718789--121718829 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
121718779 ATCTGCTCAA
* *
121718789 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTATGGAGTAC
121718810 ACTCCACCTGCTATGGAGTA
1 ACTCCACCTGCTATGGAGTA
121718830 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTATGGAGTAC
Found at i:121722580 original size:23 final size:23
Alignment explanation
Indices: 121722522--121722580 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
121722512 TTAATCACTC
* *
121722522 AATTTAAAAATGATTAAAAATATT
1 AATTTAAAAA-AATAAAAAATATT
** * *
121722546 TTTTTTATAAAATAAAAAATATT
1 AATTTAAAAAAATAAAAAATATT
121722569 AATTTAAAAAAA
1 AATTTAAAAAAA
121722581 GTATTTTTAT
Statistics
Matches: 25, Mismatches: 10, Indels: 1
0.69 0.28 0.03
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
AATTTAAAAAAATAAAAAATATT
Found at i:121723415 original size:18 final size:19
Alignment explanation
Indices: 121723394--121723433 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
121723384 AAAAACTAAA
*
121723394 AAATCTTTAAA-AATATAT
1 AAATCTATAAAGAATATAT
*
121723412 AAATCTATAAAGTATATAT
1 AAATCTATAAAGAATATAT
121723431 AAA
1 AAA
121723434 AGCTCAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
AAATCTATAAAGAATATAT
Found at i:121729003 original size:17 final size:16
Alignment explanation
Indices: 121728975--121729017 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 16
121728965 TTATAAAAAA
121728975 TAAAAAATATAATTATTT
1 TAAAAAATATAA-T-TTT
121728993 TAAAAAA-ATAATTTT
1 TAAAAAATATAATTTT
121729008 TAAAAAATAT
1 TAAAAAATAT
121729018 CTACGTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 10 0.42
16 3 0.12
17 4 0.17
18 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAAAAATATAATTTT
Found at i:121731335 original size:2 final size:2
Alignment explanation
Indices: 121731330--121731363 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
121731320 TGAATTGGGA
*
121731330 AT AT AT AT AT AT AT AT AA AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121731364 AAACACATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:121731708 original size:3 final size:3
Alignment explanation
Indices: 121731700--121731725 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
121731690 CTAAAGATAC
121731700 CAA CAA CAA CAA CAA CAA CAA CAA CA
1 CAA CAA CAA CAA CAA CAA CAA CAA CA
121731726 CAATGATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:121738803 original size:17 final size:17
Alignment explanation
Indices: 121738781--121738814 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
121738771 ATCCACTAAT
*
121738781 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
121738798 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
121738815 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:121743442 original size:17 final size:17
Alignment explanation
Indices: 121743420--121743453 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
121743410 ATCCACTAAT
*
121743420 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
121743437 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
121743454 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:121754532 original size:2 final size:2
Alignment explanation
Indices: 121754527--121754575 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
121754517 TGAGATTGTA
121754527 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
121754569 AG AG AG A
1 AG AG AG A
121754576 AATTAATTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:121761373 original size:29 final size:30
Alignment explanation
Indices: 121761321--121761402 Score: 103
Period size: 29 Copynumber: 2.7 Consensus size: 30
121761311 AGAATTGAAT
* *
121761321 CAAATCAAAATTTCATGTATAAAATTACTTA
1 CAAATCAAAA-TTCATATATAAAATTACATA
*
121761352 C-AATCAAAATTCATATGTAAAATTACATA
1 CAAATCAAAATTCATATATAAAATTACATA
*
121761381 CTAAACCAAAATTCATATATAA
1 C-AAATCAAAATTCATATATAA
121761403 TTTTAAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
29 18 0.41
30 8 0.18
31 18 0.41
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (30 bp):
CAAATCAAAATTCATATATAAAATTACATA
Found at i:121766849 original size:29 final size:29
Alignment explanation
Indices: 121766787--121766849 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
121766777 CCCCCAATTT
**
121766787 AAAAATAAATTAAAAAAAGTATTAATTTT
1 AAAAATAAATTAAAAAAAGTATTAATTGG
* **
121766816 TAAAATAAATTTTAAAAAGTATTAATTGG
1 AAAAATAAATTAAAAAAAGTATTAATTGG
121766845 AAAAA
1 AAAAA
121766850 AAGTTGTGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (29 bp):
AAAAATAAATTAAAAAAAGTATTAATTGG
Found at i:121767030 original size:30 final size:30
Alignment explanation
Indices: 121766996--121767057 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
121766986 AGAGTGGAGT
121766996 AAGAAATTTTATTTAGAAGATGGAGATAAA
1 AAGAAATTTTATTTAGAAGATGGAGATAAA
121767026 AAGAAATTTTATTTAGAAGATGGAGATAAA
1 AAGAAATTTTATTTAGAAGATGGAGATAAA
121767056 AA
1 AA
121767058 AATAACTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (30 bp):
AAGAAATTTTATTTAGAAGATGGAGATAAA
Found at i:121778122 original size:53 final size:53
Alignment explanation
Indices: 121778064--121778170 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
121778054 TAATATTGTG
*
121778064 AAAATTTTACTCGAGATTAAATTCGATTCTAAATTTAATTAAGATTTAATGTA
1 AAAATTTTACTCGAGATTAAATTCGATTCTAAATTTAATTAAGATGTAATGTA
121778117 AAAATTTTACTCGAGATTAAATTCGATTCTAAATTTAATTAAGATGTAATGTA
1 AAAATTTTACTCGAGATTAAATTCGATTCTAAATTTAATTAAGATGTAATGTA
121778170 A
1 A
121778171 TTATAATTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (53 bp):
AAAATTTTACTCGAGATTAAATTCGATTCTAAATTTAATTAAGATGTAATGTA
Found at i:121780571 original size:15 final size:15
Alignment explanation
Indices: 121780551--121780602 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
121780541 ACTACAAAAC
121780551 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
121780566 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
121780585 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
121780600 ATT
1 ATT
121780603 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:121780588 original size:19 final size:19
Alignment explanation
Indices: 121780564--121780600 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
121780554 TATTATTAAT
*
121780564 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
121780583 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
121780601 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:121780723 original size:22 final size:22
Alignment explanation
Indices: 121780683--121780738 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
121780673 AATAAAATTG
*
121780683 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
121780703 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
121780725 TATTAATAATTTAT
1 AAATAATAAATTAT
121780739 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:121784636 original size:21 final size:21
Alignment explanation
Indices: 121784610--121784692 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
121784600 TGATCAGTAT
*
121784610 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
121784631 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* * * *
121784652 ACGACATACGAGGTTCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
121784674 TACGACACATAAAGTGCCT
1 -ACGACACACAAAGTGCCT
121784693 GATCGATAAA
Statistics
Matches: 46, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
21 32 0.70
22 1 0.02
23 13 0.28
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.17
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:121784680 original size:23 final size:21
Alignment explanation
Indices: 121784608--121784682 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
121784598 CCTGATCAGT
** * *
121784608 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
121784629 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
* *
121784650 ATACGACATACGAGGTTCCTG
1 ATACGACACACGAGGTGCCTG
121784671 AAATACGACACA
1 --ATACGACACA
121784683 TAAAGTGCCT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
21 34 0.79
23 9 0.21
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:121785090 original size:15 final size:15
Alignment explanation
Indices: 121785065--121785122 Score: 98
Period size: 15 Copynumber: 3.8 Consensus size: 15
121785055 TCATATATAT
121785065 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
121785081 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
121785096 TATAATTTCAATCAA
1 TATAAATTCAATCAA
121785111 TATAAATTCAAT
1 TATAAATTCAAT
121785123 AAATTCATCG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 36 0.90
16 4 0.10
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:121786405 original size:5 final size:5
Alignment explanation
Indices: 121786392--121786423 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
121786382 TTCTTTAGTT
121786392 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
121786424 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:121786459 original size:8 final size:8
Alignment explanation
Indices: 121786446--121786474 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
121786436 TATCTTTATT
121786446 ATATAATA
1 ATATAATA
121786454 ATATAATA
1 ATATAATA
121786462 ATATAATA
1 ATATAATA
121786470 ATATA
1 ATATA
121786475 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:121790369 original size:45 final size:45
Alignment explanation
Indices: 121790283--121790391 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 45
121790273 ACAAATTCGG
* *
121790283 AACAGTAACAAG-AACAATATTCAACACACAAAGTGCTGAATCGAT
1 AACAGTAAC-AGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
* * * *
121790328 AACGGTAATAGTAACAGTATTCGACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
*
121790373 AACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGTA
121790392 ACAGTAGTCG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 2 0.04
45 52 0.96
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
Found at i:121790386 original size:12 final size:12
Alignment explanation
Indices: 121790369--121790393 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121790359 AGTGCCGAAT
121790369 CGGTAACAGTAA
1 CGGTAACAGTAA
121790381 CGGTAACAGTAA
1 CGGTAACAGTAA
121790393 C
1 C
121790394 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:121792179 original size:31 final size:32
Alignment explanation
Indices: 121792123--121792185 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
121792113 TACACTTGTC
*
121792123 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
121792155 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
121792186 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:121807258 original size:11 final size:11
Alignment explanation
Indices: 121807244--121807280 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
121807234 AAACTGTGAT
121807244 AAAACAACAAG
1 AAAACAACAAG
* *
121807255 AAAATAACAAC
1 AAAACAACAAG
121807266 AAAACAACAAG
1 AAAACAACAAG
121807277 AAAA
1 AAAA
121807281 TGGTAAATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.76, C:0.16, G:0.05, T:0.03
Consensus pattern (11 bp):
AAAACAACAAG
Found at i:121812571 original size:25 final size:25
Alignment explanation
Indices: 121812526--121812574 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
121812516 AAGGTTTGTA
*
121812526 ATACGTGAAAGAATTTCTTAAAACT
1 ATACGTGAAAGAATTTATTAAAACT
*
121812551 ATACGTGAAA-ATTTTAATTAAAAC
1 ATACGTGAAAGAATTT-ATTAAAAC
121812575 ATGAAACAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (25 bp):
ATACGTGAAAGAATTTATTAAAACT
Found at i:121813176 original size:28 final size:27
Alignment explanation
Indices: 121813109--121813176 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 27
121813099 AATATAAAAT
*
121813109 ATTTATTTTTATATAAAAATTAAAATTA
1 ATTTA-TTTTAAATAAAAATTAAAATTA
*
121813137 ATTATATATTAAATAAAAA-TAAAATTTA
1 ATT-TATTTTAAATAAAAATTAAAA-TTA
*
121813165 GTTTAGTTTTAA
1 ATTTA-TTTTAA
121813177 GTAACCACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
27 7 0.21
28 24 0.73
29 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
ATTTATTTTAAATAAAAATTAAAATTA
Found at i:121816584 original size:3 final size:3
Alignment explanation
Indices: 121816576--121816660 Score: 50
Period size: 3 Copynumber: 28.0 Consensus size: 3
121816566 TTTTTTATAT
* * * *
121816576 TTA TTA TTA TTA -TG TTA TTTA TTG TTA TTA TTA -CA TTT TTA TGTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * *
121816621 TATA ATA TT- TATA TTA TTA CTA CTA TTA TTA TTA TTA TTA
1 T-TA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
121816661 GCATATTTCT
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
2 3 0.05
3 51 0.81
4 9 0.14
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:121816700 original size:18 final size:18
Alignment explanation
Indices: 121816677--121816715 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
121816667 TTCTCAATTA
121816677 ATACTTACATATATATAT
1 ATACTTACATATATATAT
* *
121816695 ATACTTTCATATATATTT
1 ATACTTACATATATATAT
121816713 ATA
1 ATA
121816716 GTTGTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (18 bp):
ATACTTACATATATATAT
Found at i:121816880 original size:24 final size:25
Alignment explanation
Indices: 121816853--121816914 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
121816843 ATATATCATC
121816853 TTATGTATATATTCTTAAATA-C-TA
1 TTATGTATATATT-TTAAATACCATA
* *
121816877 TTATATATATATTTTTAATACCATA
1 TTATGTATATATTTTAAATACCATA
*
121816902 TTGTGTATATATT
1 TTATGTATATATT
121816915 ATTATTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 6 0.19
24 13 0.41
25 13 0.41
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.53
Consensus pattern (25 bp):
TTATGTATATATTTTAAATACCATA
Found at i:121816930 original size:13 final size:13
Alignment explanation
Indices: 121816912--121816936 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121816902 TTGTGTATAT
121816912 ATTATTATTATTA
1 ATTATTATTATTA
121816925 ATTATTATTATT
1 ATTATTATTATT
121816937 GCTAGTATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTATTATTATTA
Found at i:121817090 original size:16 final size:17
Alignment explanation
Indices: 121817050--121817093 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
121817040 GCTTTTGTAT
121817050 TTTA-ATATTATTATTA
1 TTTATATATTATTATTA
121817066 TTTAT-TATTATT-TT-
1 TTTATATATTATTATTA
121817080 TTGTATATATTATT
1 TT-TATATATTATT
121817094 CATACTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.08
15 5 0.20
16 18 0.72
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTATATATTATTATTA
Found at i:121817293 original size:17 final size:17
Alignment explanation
Indices: 121817271--121817320 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
121817261 CTATTATTAC
121817271 ATATTATTTTATTTTTA
1 ATATTATTTTATTTTTA
*
121817288 ATATTATTAAATTATTTTTT
1 ATATTATT---TTATTTTTA
*
121817308 ATATTCTTTTATT
1 ATATTATTTTATT
121817321 ATCATTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 13 0.46
20 15 0.54
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
ATATTATTTTATTTTTA
Found at i:121817307 original size:27 final size:27
Alignment explanation
Indices: 121817255--121817309 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
121817245 ATATTTACCC
* *
121817255 TTTTTACTATTATTACATATTATTTTA
1 TTTTTAATATTATTAAATATTATTTTA
121817282 TTTTTAATATTATTAAATTATT-TTTTA
1 TTTTTAATATTATTAAA-TATTATTTTA
121817309 T
1 T
121817310 ATTCTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTAATATTATTAAATATTATTTTA
Found at i:121817390 original size:28 final size:27
Alignment explanation
Indices: 121817358--121817430 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 27
121817348 ATACATATAC
121817358 ATATATATTTTTTGTACATATCATTATTTT
1 ATATATA-TTTTTGTACATAT-ATT-TTTT
*
121817388 ATAT-TATTGTTGTA-A-ATATTTTTT
1 ATATATATTTTTGTACATATATTTTTT
121817412 ATATATATTTTATGTACAT
1 ATATATATTTT-TGTACAT
121817431 CTCCTAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
24 8 0.22
25 8 0.22
26 6 0.16
27 2 0.05
28 7 0.19
29 2 0.05
30 4 0.11
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (27 bp):
ATATATATTTTTGTACATATATTTTTT
Found at i:121818812 original size:34 final size:34
Alignment explanation
Indices: 121818769--121818836 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
121818759 TCAGCAAAGG
121818769 ACTTAATAAATAGTATAGATAAAAATAATTTATT
1 ACTTAATAAATAGTATAGATAAAAATAATTTATT
121818803 ACTTAATAAATAGTATAGATAAAAATAATTTATT
1 ACTTAATAAATAGTATAGATAAAAATAATTTATT
121818837 TCTTTTGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (34 bp):
ACTTAATAAATAGTATAGATAAAAATAATTTATT
Found at i:121821259 original size:38 final size:38
Alignment explanation
Indices: 121821207--121821283 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
121821197 CGAATGGAGT
121821207 TAAGCTCGCAAGAGCTAACAGCTATTGTAGTTAATCAG
1 TAAGCTCGCAAGAGCTAACAGCTATTGTAGTTAATCAG
*
121821245 TAAGCTCGCGAGAGCTAACAGCTATTGTAGTTAATCAG
1 TAAGCTCGCAAGAGCTAACAGCTATTGTAGTTAATCAG
121821283 T
1 T
121821284 GCGGGATCGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (38 bp):
TAAGCTCGCAAGAGCTAACAGCTATTGTAGTTAATCAG
Found at i:121826576 original size:21 final size:20
Alignment explanation
Indices: 121826552--121826591 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
121826542 ATAAAAGAAT
*
121826552 AATATATTAATATTTTATTAA
1 AATATATTAA-AATTTATTAA
*
121826573 AATATTTTAAAATTTATTA
1 AATATATTAAAATTTATTA
121826592 CATTTTTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
AATATATTAAAATTTATTAA
Found at i:121831264 original size:19 final size:19
Alignment explanation
Indices: 121831242--121831281 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
121831232 ATCAAATGAC
*
121831242 TTTAAATT-ATTGCTTGAAT
1 TTTAAATTGATT-CTTAAAT
121831261 TTTAAATTGATTCTTAAAT
1 TTTAAATTGATTCTTAAAT
121831280 TT
1 TT
121831282 CAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (19 bp):
TTTAAATTGATTCTTAAAT
Found at i:121832116 original size:62 final size:60
Alignment explanation
Indices: 121832011--121832132 Score: 181
Period size: 62 Copynumber: 2.0 Consensus size: 60
121832001 AAAGTATAAT
* * *
121832011 TTTACAGAAAATAATTTGTAATTTTATCAGGAGACTGAGAAACAAAGTTCCAGGCTGTGC
1 TTTACAGAAAATAATTTGTAATATTATCAGGAAACTGAAAAACAAAGTTCCAGGCTGTGC
* *
121832071 TTTACAGAAAATAATATTTTTAATATTATCGGGAAACTGAAAAACAAAGTTCCAGGCTGTGC
1 TTTACAGAAAAT-A-ATTTGTAATATTATCAGGAAACTGAAAAACAAAGTTCCAGGCTGTGC
121832133 CCAAAATCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 12 0.22
61 1 0.02
62 42 0.76
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (60 bp):
TTTACAGAAAATAATTTGTAATATTATCAGGAAACTGAAAAACAAAGTTCCAGGCTGTGC
Found at i:121844365 original size:15 final size:15
Alignment explanation
Indices: 121844345--121844375 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
121844335 TTCTGCTTTT
121844345 TTCTTCGTCGTCTTC
1 TTCTTCGTCGTCTTC
*
121844360 TTCTTCGTCTTCTTC
1 TTCTTCGTCGTCTTC
121844375 T
1 T
121844376 CTTGCCTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.32, G:0.10, T:0.58
Consensus pattern (15 bp):
TTCTTCGTCGTCTTC
Found at i:121844375 original size:12 final size:12
Alignment explanation
Indices: 121844345--121844375 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
121844335 TTCTGCTTTT
*
121844345 TTCTTCGTCGTC
1 TTCTTCTTCGTC
121844357 TTCTTCTTCGTC
1 TTCTTCTTCGTC
121844369 TTCTTCT
1 TTCTTCT
121844376 CTTGCCTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.32, G:0.10, T:0.58
Consensus pattern (12 bp):
TTCTTCTTCGTC
Found at i:121845195 original size:60 final size:60
Alignment explanation
Indices: 121845084--121845197 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
121845074 CTATGTTTTT
* * * *
121845084 TTTCTTTTTTGGTCGCTCGACAATGAAAAATTATAAAATAGTCATCCAACTATTAGTAAA
1 TTTCTTTTTTGGTCCCTCAACAATGAAAAATTATAAAACAATCATCCAACTATTAGTAAA
*
121845144 TTTCTTTTTTGGTCACCT-AACTATGAAAAATTATAAAACAATCA-CCAAACTATT
1 TTTCTTTTTTGGTC-CCTCAACAATGAAAAATTATAAAACAATCATCC-AACTATT
121845198 CAAATTTGTC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 2 0.04
60 43 0.91
61 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.37
Consensus pattern (60 bp):
TTTCTTTTTTGGTCCCTCAACAATGAAAAATTATAAAACAATCATCCAACTATTAGTAAA
Found at i:121845210 original size:60 final size:59
Alignment explanation
Indices: 121845106--121845220 Score: 135
Period size: 60 Copynumber: 1.9 Consensus size: 59
121845096 TCGCTCGACA
* * **
121845106 ATGAAAAATTATAAAATAGTCATCCAACTATTAGTAAATTTCTTTTTTGGTCACCTAACT
1 ATGAAAAATTATAAAACAATCATCCAACTATTAG-AAATTTCTTTTAGGGTCACCTAACT
*
121845166 ATGAAAAATTATAAAACAATCA-CCAAACTATTCA-AATTTGTCTTTTAGGGTCACC
1 ATGAAAAATTATAAAACAATCATCC-AACTATT-AGAAATT-TCTTTTAGGGTCACC
121845221 AATTGGCTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
59 6 0.13
60 40 0.85
61 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (59 bp):
ATGAAAAATTATAAAACAATCATCCAACTATTAGAAATTTCTTTTAGGGTCACCTAACT
Found at i:121845990 original size:17 final size:17
Alignment explanation
Indices: 121845947--121845991 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
121845937 TTGAATTTAC
*
121845947 AAAATTATTATAAATTT
1 AAAATAATTATAAATTT
*
121845964 AAAATTATTATAAATTT
1 AAAATAATTATAAATTT
*
121845981 AAAGTAATTAT
1 AAAATAATTAT
121845992 GTTAAATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AAAATAATTATAAATTT
Found at i:121845991 original size:20 final size:17
Alignment explanation
Indices: 121845947--121845983 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
121845937 TTGAATTTAC
121845947 AAAATTATTATAAATTT
1 AAAATTATTATAAATTT
121845964 AAAATTATTATAAATTT
1 AAAATTATTATAAATTT
121845981 AAA
1 AAA
121845984 GTAATTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAATTATTATAAATTT
Found at i:121852472 original size:20 final size:19
Alignment explanation
Indices: 121852442--121852479 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
121852432 GATTTATAAA
121852442 ATTAAAATTAATAAAAATC
1 ATTAAAATTAATAAAAATC
*
121852461 ATTAATAATTAATTAAAAT
1 ATTAA-AATTAATAAAAAT
121852480 ATAATTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTAAAATTAATAAAAATC
Found at i:121852485 original size:15 final size:16
Alignment explanation
Indices: 121852464--121852499 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
121852454 AAAAATCATT
121852464 AATAATTA-ATTAAAA
1 AATAATTATATTAAAA
*
121852479 TATAATTATATTAAAA
1 AATAATTATATTAAAA
121852495 AATAA
1 AATAA
121852500 AATCCAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATTATATTAAAA
Found at i:121853494 original size:57 final size:57
Alignment explanation
Indices: 121853398--121853506 Score: 132
Period size: 57 Copynumber: 1.9 Consensus size: 57
121853388 ATCAAACTGA
* * * *
121853398 AAAAAAACTCACATACCAATTTGAATATTGAAGTCAAACTCAAGTATTAAATTAAGG
1 AAAAAAACTCACATACCAAATTGAACATTGAACTCAAACTCAAGTACTAAATTAAGG
* *
121853455 AAAAAAGCTCA-AGTACCAAATTGAACATTGAAACT-AAACTTAAGTACTAAAT
1 AAAAAAACTCACA-TACCAAATTGAACATTG-AACTCAAACTCAAGTACTAAAT
121853507 AGGATATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
56 1 0.02
57 40 0.91
58 3 0.07
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (57 bp):
AAAAAAACTCACATACCAAATTGAACATTGAACTCAAACTCAAGTACTAAATTAAGG
Found at i:121854554 original size:18 final size:18
Alignment explanation
Indices: 121854533--121854583 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
121854523 CGTTTACGAT
121854533 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
*
121854551 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
121854569 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
121854584 AGTAGTTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:121860134 original size:20 final size:20
Alignment explanation
Indices: 121860109--121860154 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
121860099 CTGATTTTTT
121860109 ATATTTAATAATTTTTTAAA
1 ATATTTAATAATTTTTTAAA
** *
121860129 ATATTTTTTTATTTTTTAAA
1 ATATTTAATAATTTTTTAAA
121860149 AT-TTTA
1 ATATTTA
121860155 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATATTTAATAATTTTTTAAA
Found at i:121860138 original size:31 final size:31
Alignment explanation
Indices: 121860103--121860162 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
121860093 TTTCAACTGA
121860103 TTTTTTA-TATTTAATAATTTT-TTAAAATAT
1 TTTTTTATTATTTAA-AATTTTATTAAAATAT
*
121860133 TTTTTTATTTTTTAAAATTTTATTAAAATA
1 TTTTTTATTATTTAAAATTTTATTAAAATA
121860163 ATATGTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (31 bp):
TTTTTTATTATTTAAAATTTTATTAAAATAT
Found at i:121863932 original size:30 final size:31
Alignment explanation
Indices: 121863882--121863942 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
121863872 CTAACACGGT
121863882 TAAATTATGATCTCAAA-TTTTAAAATATTC
1 TAAATTATGATCTCAAATTTTTAAAATATTC
* *
121863912 TAAATT-TGATCTACATATTTTTAATATATTC
1 TAAATTATGATCT-CAAATTTTTAAAATATTC
121863943 AATATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 9 0.33
31 12 0.44
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.48
Consensus pattern (31 bp):
TAAATTATGATCTCAAATTTTTAAAATATTC
Found at i:121869782 original size:25 final size:22
Alignment explanation
Indices: 121869751--121869808 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
121869741 ATTATATGTG
121869751 TATATATTATGTAAAATGTTTTAA
1 TATATATTATGT-AAATGTTTT-A
* *
121869775 TATTATATTATATATATGTTTTA
1 TA-TATATTATGTAAATGTTTTA
121869798 TATATATTATG
1 TATATATTATG
121869809 AACATGTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 8 0.27
23 3 0.10
24 10 0.33
25 9 0.30
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (22 bp):
TATATATTATGTAAATGTTTTA
Found at i:121869815 original size:22 final size:23
Alignment explanation
Indices: 121869751--121869815 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
121869741 ATTATATGTG
121869751 TATATATTATGTAAAATGTTTTAA
1 TATATATTATG-AAAATGTTTTAA
*
121869775 TATTATATTAT-ATATATGTTTT-A
1 TA-TATATTATGA-AAATGTTTTAA
*
121869798 TATATATTATGAACATGT
1 TATATATTATGAAAATGT
121869816 ATTTTCAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 13 0.36
23 5 0.14
24 10 0.28
25 8 0.22
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (23 bp):
TATATATTATGAAAATGTTTTAA
Found at i:121869831 original size:47 final size:46
Alignment explanation
Indices: 121869751--121869852 Score: 104
Period size: 47 Copynumber: 2.2 Consensus size: 46
121869741 ATTATATGTG
*
121869751 TATATATTATGTAAAATGTTTTAATATTATATTA-TATATATGTTTTA
1 TATATATTATGTAAAATGTTTTAATATTATATTAGT-TAAAT-TTTTA
* *
121869798 TATATATTATG-AACATGTATTTTCAATA-T-TATTAGTTAAATTTTTG
1 TATATATTATGTAAAATG--TTTT-AATATTATATTAGTTAAATTTTTA
121869844 TATATATTA
1 TATATATTA
121869853 CCCTATGTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
46 18 0.38
47 20 0.42
48 6 0.12
49 4 0.08
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (46 bp):
TATATATTATGTAAAATGTTTTAATATTATATTAGTTAAATTTTTA
Found at i:121873983 original size:140 final size:137
Alignment explanation
Indices: 121873743--121874222 Score: 509
Period size: 140 Copynumber: 3.5 Consensus size: 137
121873733 CATAGTCTTG
* * * *
121873743 GACAAAACCGACTCTTATTTAAACGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
**
121873808 TGGCCAAAGTGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAATGTGTAGG
66 TGGCCAAAAAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTG-CCCAAATGTGTAGG
121873873 CATAGTGTT
130 CATAG-GTT
* * * *
121873882 CGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAAAG
1 -GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
* * * * * *
121873947 TTGACCAAAAAGTATGTCGACAAGTCTATCCCAACACTTAGGAAAATG-T---C--GTCT-TAGG
65 TTGGCCAAAAAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGCCCAAATGTGTAGG
121874005 -ACT-GG--
130 CA-TAGGTT
* * *
121874010 G-CAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * ** *
121874074 TGGCCAAAGCA-TATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCG
66 TGGCCAAA-AAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTG-CCCAAATGTGTAG
* * *
121874138 TCTTAGGACTA
129 GCATAGG--TT
* * * *
121874149 GACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGTATACATATCACAACCCTTATGCAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
121874214 TTGGCCAAA
65 TTGGCCAAA
121874223 GCATACAACA
Statistics
Matches: 289, Mismatches: 33, Indels: 35
0.81 0.09 0.10
Matches are distributed among these distances:
126 96 0.33
127 2 0.01
130 1 0.00
131 3 0.01
132 5 0.02
133 3 0.01
134 3 0.01
135 3 0.01
139 2 0.01
140 103 0.36
141 68 0.24
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (137 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
TGGCCAAAAAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGCCCAAATGTGTAGGC
ATAGGTT
Found at i:121874101 original size:266 final size:266
Alignment explanation
Indices: 121873617--121874528 Score: 1004
Period size: 266 Copynumber: 3.4 Consensus size: 266
121873607 CATACTATTG
* * * * * * *
121873617 GACATAGCTAACTCTTATTTAAGTGTTGCCTTAGGCATGCATATACCATCTCTTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAGAGT
* * * * * *
121873682 TGGCCAAAGCA-TATGTTGACAAGTCTATCCCAACACTTAGGAAAGTGTTGGCATA-GTCTTGGA
66 TGGCCAAA-AAGTATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGAC-TGGA
* * * *
121873745 CAAAACCGACTCTTATTTAAACGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTG
129 CAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTG
* * * * *
121873810 GCCAAAGTGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAATGTGTAGGCA
194 GCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGCCT
* *
121873875 TAGTG-TTC
259 TAG-GACTA
* *
121873883 GACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAGAGT
* * *
121873948 TGACCAAAAAGTATGTCGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGACTGGGCA
66 TGGCCAAAAAGTATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGACTGGACA
* * *
121874013 AAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGTTGGC
131 AAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGC
* * * * *
121874078 CAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCGTCTTA
196 CAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGCCTTA
121874143 GGACTA
261 GGACTA
* * * * * *
121874149 GACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGTATACATATCACAACCCTTATGCAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAGAG
* ** *** * * *
121874214 TTGGCC--AAAGCA---T-ACAACACT-TAGGAA-AGTGTCGCCCCAAAAGTGTCGTCTTAGGAC
65 TTGGCCAAAAAGTATGTTGACAAGTCTATCCCAACACT-TAG---GAAAA-TGTCGTCTTAGGAC
** * **
121874271 TACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATTTAAAG
125 TGGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAG
* * * *
121874336 AGTTGGCGAAAGCGTATGTTGGCAAGTCTATACCAACACTTACGAAAGTG-TCACCCCAAAAGTG
189 AGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGA-CCCAAAAGTG
121874400 TCGCCTTAGGACTA
253 TCGCCTTAGGACTA
* *
121874414 GACAAAGCCAACTCTTATTTAAGCGTTGCCTT-AGTCATGCATATCCCAACCTTTATACAAATAG
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAAG-CATGCATATCCCAACCCTTATACAAAGAG
** * * * *
121874478 TTGGCCAAAGCGTATATTGGCCAGTCTATCCCAACACTTAGGAAAGTGTCG
65 TTGGCCAAAAAGTATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCG
121874529 CCACAAAAGT
Statistics
Matches: 532, Mismatches: 94, Indels: 39
0.80 0.14 0.06
Matches are distributed among these distances:
259 2 0.00
260 5 0.01
261 6 0.01
263 5 0.01
264 73 0.14
265 132 0.25
266 229 0.43
267 65 0.12
268 3 0.01
269 1 0.00
270 4 0.01
271 5 0.01
272 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (266 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTATACAAAGAGT
TGGCCAAAAAGTATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGACTGGACA
AAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGC
CAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGCCTTA
GGACTA
Found at i:121874324 original size:124 final size:124
Alignment explanation
Indices: 121874104--121874348 Score: 409
Period size: 124 Copynumber: 2.0 Consensus size: 124
121874094 AAGTCTATCC
*
121874104 CAACACTTAGGAAAGTGTCGCCCCAAAAATGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATT
1 CAACACTTAGGAAAGTGTCGCCCCAAAAATGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
* * *
121874169 TAAGCGTTGTCTTAGGTATACATATCACAACCCTTATGCAAAGAGTTGGCCAAAGCATA
66 CAAGCGTTGCCTTAGGCATACATATCACAACCCTTATGCAAAGAGTTGGCCAAAGCATA
*
121874228 CAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
1 CAACACTTAGGAAAGTGTCGCCCCAAAAATGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
* ** *
121874293 CAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATTTAAAGAGTTGGCGAAAGC
66 CAAGCGTTGCCTTAGGCATACATATCACAACCCTTATGCAAAGAGTTGGCCAAAGC
121874349 GTATGTTGGC
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
124 112 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (124 bp):
CAACACTTAGGAAAGTGTCGCCCCAAAAATGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
CAAGCGTTGCCTTAGGCATACATATCACAACCCTTATGCAAAGAGTTGGCCAAAGCATA
Found at i:121874480 original size:140 final size:141
Alignment explanation
Indices: 121874228--121874553 Score: 492
Period size: 140 Copynumber: 2.3 Consensus size: 141
121874218 CCAAAGCATA
121874228 CAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
1 CAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
** * *
121874293 CAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATTTAAAGAGTTGGCGAAAGCGTATGTTGG
66 CAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATATTGG
121874358 CAAGTCTATAC
131 CAAGTCTATAC
* * * *
121874369 CAACACTTACGAAAGTGTCACCCCAAAAGTGTCGCCTTAGGACTAGAC-AAAGCCAACTCTTATT
1 CAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
* * * * *
121874433 TAAGCGTTGCCTTAGTCATGCATATCCCAACCTTTATACAAATAGTTGGCCAAAGCGTATATTGG
66 CAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATATTGG
* *
121874498 CCAGTCTATCC
131 CAAGTCTATAC
* *
121874509 CAACACTTAGGAAAGTGTCGCCACAAAAGTGTCGTCTTAAGACTA
1 CAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTA
121874554 TTTTGTTGTA
Statistics
Matches: 165, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
140 121 0.73
141 44 0.27
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (141 bp):
CAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTCTTATT
CAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATATTGG
CAAGTCTATAC
Found at i:121879627 original size:91 final size:91
Alignment explanation
Indices: 121879045--121879654 Score: 299
Period size: 93 Copynumber: 6.8 Consensus size: 91
121879035 AAATTAAAAA
** * * * *
121879045 AAAAATAT-TTTTGCA-CTACCATACTCAAGCTAAAGTGTTCC-AAAGATAAAATATTATAAACA
1 AAAAATATATTTTG-AGC-ACCATACTCAAGCCCAAGTCTCCCGAAA-ATAAAATATAATAAATA
* * * *
121879107 ATAATTTTTACAACTATTCCAAAAAAAAATT
63 ATAATTTTTATAATTATTCC--GAAAATATT
* * * * ** * *
121879138 -AAAATAT-TCTT-AGGCATCATACTCAAAGTCCAAGTGTCCCGAAAATGGAACATAACAAATAA
1 AAAAATATATTTTGA-GCACCATACTC-AAGCCCAAGTCTCCCGAAAATAAAATATAATAAATAA
* **
121879200 TAATTTTTACAATTA-TCTTTAAAA-A--
64 TAATTTTTATAATTATTC-CGAAAATATT
* * *
121879225 AAAAATAT-TTTTGCACCACCATACTCAAGGACC---T-T---GAAAAT-GAATATAATAAATAA
1 AAAAATATATTTTG-AGCACCATACTCAA-GCCCAAGTCTCCCGAAAATAAAATATAATAAATAA
*
121879281 T-TTTTTTATAATTATTCCGAAAA-ATT
64 TAATTTTTATAATTATTCCGAAAATATT
* * * * *
121879307 AAGAATATATTTTGTA-CTACTATACTCAAACCCAAGTATCCCGAAAATGAAATATAATAAATAA
1 AAAAATATATTTTG-AGC-ACCATACTCAAGCCCAAGTCTCCCGAAAATAAAATATAATAAATAA
*
121879371 TAATTTTTACAATTATCTCC-AAAA-ATT
64 TAATTTTTATAATTAT-TCCGAAAATATT
* * * ** * * *
121879398 TAAAATATATGTTCAT-AGCATCATACTCAAGTCCAAGTGCT-TTGAAAAATGATATATAGTAAA
1 AAAAATATAT-TT--TGAGCACCATACTCAAGCCCAAGT-CTCCCG-AAAATAAAATATAATAAA
* * * *
121879461 CAATAATTTTCATAATTATCCCGAAAA-AGTA
61 TAATAATTTTTATAATTATTCCGAAAATA-TT
* * *** * * *
121879492 AAAAAAATATTTTTGCACCACCATACTCAAGTTAAAAT-TACCCGAAGATAAAATATTATAAATA
1 AAAAATATA-TTTTG-AGCACCATACTCAAGCCCAAGTCT-CCCGAAAATAAAATATAATAAATA
* *
121879556 ATAATTTTTATAATTATTCTGAAAATTTT
63 ATAATTTTTATAATTATTCCGAAAATATT
* * *
121879585 AAAAATAT-TTTTCGGGCACCATACTCAAGCCCAAGTCTCCCGAAAATAAAATGTAAAAAATAA-
1 AAAAATATATTTT-GAGCACCATACTCAAGCCCAAGTCTCCCGAAAATAAAATATAATAAATAAT
121879648 AATTTTT
65 AATTTTT
121879655 TATATATAGT
Statistics
Matches: 397, Mismatches: 80, Indels: 83
0.71 0.14 0.15
Matches are distributed among these distances:
80 16 0.04
81 16 0.04
82 16 0.04
83 16 0.04
85 2 0.01
86 2 0.01
88 12 0.03
89 19 0.05
90 28 0.07
91 78 0.20
92 76 0.19
93 86 0.22
94 29 0.07
95 1 0.00
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (91 bp):
AAAAATATATTTTGAGCACCATACTCAAGCCCAAGTCTCCCGAAAATAAAATATAATAAATAATA
ATTTTTATAATTATTCCGAAAATATT
Found at i:121880258 original size:19 final size:19
Alignment explanation
Indices: 121880231--121880267 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
121880221 TCTTCATTGA
*
121880231 ATTTATAAAAATATTTAAT
1 ATTTATAAAAAAATTTAAT
*
121880250 ATTTGTAAAAAAATTTAA
1 ATTTATAAAAAAATTTAA
121880268 AGTAGAAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (19 bp):
ATTTATAAAAAAATTTAAT
Found at i:121885739 original size:22 final size:22
Alignment explanation
Indices: 121885691--121885736 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
121885681 AAATGAGAGG
*
121885691 TTTAATTAAAATTTTTGAGAAA
1 TTTAATGAAAATTTTTGAGAAA
*
121885713 ATTAATGAAAATTTTTGA-AAA
1 TTTAATGAAAATTTTTGAGAAA
121885734 TTT
1 TTT
121885737 TAAAGGGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (22 bp):
TTTAATGAAAATTTTTGAGAAA
Found at i:121890143 original size:21 final size:21
Alignment explanation
Indices: 121890119--121890158 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
121890109 TAATATTTAT
*
121890119 ATATTTTATAATAA-AATTAGA
1 ATATATTATAA-AATAATTAGA
121890140 ATATATTATAAAATAATTA
1 ATATATTATAAAATAATTA
121890159 TTTAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
ATATATTATAAAATAATTAGA
Found at i:121897312 original size:2 final size:2
Alignment explanation
Indices: 121897305--121897334 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
121897295 AATAGTAAAA
121897305 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
121897335 GAAGTCCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:121900125 original size:23 final size:24
Alignment explanation
Indices: 121900080--121900127 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
121900070 TAATTTTATT
* *
121900080 ATTTAAAAAAATTTAAAGGGATTA
1 ATTTAAAAAAATTAAAAGAGATTA
*
121900104 ATTT-AAAAAATTAAAATAGATTA
1 ATTTAAAAAAATTAAAAGAGATTA
121900127 A
1 A
121900128 AAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (24 bp):
ATTTAAAAAAATTAAAAGAGATTA
Found at i:121901563 original size:122 final size:118
Alignment explanation
Indices: 121901360--121901580 Score: 327
Period size: 122 Copynumber: 1.8 Consensus size: 118
121901350 CCATTTTTGG
*
121901360 GTGATTGAATTAAAGGGGTTTTTTTTTTGAGCTTTAAGGATTTGATTTTTTGTTTTTACACTTAA
1 GTGATTGAATTAAAGGGATTTTTTTTTTGAGCTTTAAGGATTTGATTTTTTGTTTTTACACTTAA
*
121901425 ATGATTATTACCTGTATGCCAATGGAAATGTATGGACTAAAAACCATTTTCAT
66 ATGATTATTACATGTATGCCAATGGAAATGTATGGACTAAAAACCATTTTCAT
* *
121901478 GTGATTGAATTGAAGGGATTTTTTTTTCTGAGCTTTTAAGGTTTTGATTTTTTTGTTTTTTACAC
1 GTGATTGAATTAAAGGGATTTTTTTTT-TGAGC-TTTAAGGATTTGA-TTTTTTG-TTTTTACAC
* * *
121901543 TTTTAA-GATTATTGCATGTATGCCATTGGAAATGTATG
62 -TTAAATGATTATTACATGTATGCCAATGGAAATGTATG
121901581 AACAACCTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 25 0.27
119 5 0.05
120 12 0.13
121 7 0.08
122 38 0.42
123 4 0.04
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (118 bp):
GTGATTGAATTAAAGGGATTTTTTTTTTGAGCTTTAAGGATTTGATTTTTTGTTTTTACACTTAA
ATGATTATTACATGTATGCCAATGGAAATGTATGGACTAAAAACCATTTTCAT
Found at i:121907699 original size:10 final size:10
Alignment explanation
Indices: 121907684--121907709 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
121907674 GAATTGGGAA
121907684 AAAAAAAAAC
1 AAAAAAAAAC
121907694 AAAAAAAAAC
1 AAAAAAAAAC
121907704 AAAAAA
1 AAAAAA
121907710 CAAAACAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:121907699 original size:12 final size:12
Alignment explanation
Indices: 121907682--121907718 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
121907672 TGGAATTGGG
121907682 AAAAAAAAAAAC
1 AAAAAAAAAAAC
121907694 --AAAAAAAAAC
1 AAAAAAAAAAAC
*
121907704 AAAAAACAAAAC
1 AAAAAAAAAAAC
121907716 AAA
1 AAA
121907719 GAGCAGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
10 10 0.45
12 12 0.55
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:121907707 original size:17 final size:16
Alignment explanation
Indices: 121907682--121907714 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
121907672 TGGAATTGGG
121907682 AAAAAAAAAAACAAAA
1 AAAAAAAAAAACAAAA
121907698 AAAAACAAAAAACAAAA
1 AAAAA-AAAAAACAAAA
121907715 CAAAGAGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAACAAAA
Found at i:121910599 original size:4 final size:4
Alignment explanation
Indices: 121910590--121910626 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
121910580 AATAAGTAAC
121910590 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
121910627 AATTTGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
ATTA
Found at i:121913184 original size:21 final size:22
Alignment explanation
Indices: 121913153--121913193 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
121913143 ATATCAGATT
121913153 CATTAAAAAAAACAAT-CATAAA
1 CATTAAAAAAAA-AATGCATAAA
121913175 CATT-AAAAAAAAATGCATA
1 CATTAAAAAAAAAATGCATA
121913194 TATACATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 11 0.61
22 4 0.22
ACGTcount: A:0.66, C:0.12, G:0.02, T:0.20
Consensus pattern (22 bp):
CATTAAAAAAAAAATGCATAAA
Found at i:121922590 original size:31 final size:31
Alignment explanation
Indices: 121922552--121922630 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
121922542 TTTAACGGTT
121922552 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
121922583 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
121922614 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
121922631 ACTGTAAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:121922726 original size:42 final size:42
Alignment explanation
Indices: 121922654--121922745 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
121922644 TGGCCCATAG
** *
121922654 GCCCATTTCAATATCACATATAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATATAATACCAATGAATGTATGCAA
*
121922696 GCCCATTTCAATATCATATGA-AATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAT-ATAATACCAATGAATGTATGCAA
*
121922738 GTCCATTT
1 GCCCATTT
121922746 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATATAATACCAATGAATGTATGCAA
Found at i:121922961 original size:26 final size:26
Alignment explanation
Indices: 121922877--121923012 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
121922867 CTGGAGGCCT
121922877 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
121922901 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
121922926 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
121922952 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
121922978 AGCCATTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
121923004 AGCCCTTTT
1 AGCCCTTTT
121923013 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.33
26 56 0.57
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:121923002 original size:52 final size:51
Alignment explanation
Indices: 121922883--121923012 Score: 221
Period size: 52 Copynumber: 2.6 Consensus size: 51
121922873 GCCTAGCCTC
*
121922883 TTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCC
1 TTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCA
121922931 TTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
1 TTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCA
121922983 TTTTCAATAAACTGGGGCATAAGCCCTTTT
1 TTTTCAATAAACTGGGGCATAAGCCCTTTT
121923013 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
48 4 0.05
49 3 0.04
50 10 0.13
51 25 0.32
52 35 0.45
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (51 bp):
TTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCA
Found at i:121923113 original size:5 final size:5
Alignment explanation
Indices: 121923103--121923128 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
121923093 TGAGCATTCG
121923103 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
121923129 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:121924813 original size:20 final size:20
Alignment explanation
Indices: 121924788--121924859 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
121924778 TGCTCACCCC
121924788 TACATATCATGTGCATTTCA
1 TACATATCATGTGCATTTCA
*
121924808 TACATATCATGTGCATTTTA
1 TACATATCATGTGCATTTCA
*
121924828 TACATATCATGTGCATATCA
1 TACATATCATGTGCATTTCA
121924848 TATCA-ATCATGT
1 TA-CATATCATGT
121924860 ATATCATATC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
20 46 0.96
21 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
TACATATCATGTGCATTTCA
Found at i:121925629 original size:27 final size:27
Alignment explanation
Indices: 121925568--121925631 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
121925558 GGCGTATTCA
121925568 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
121925595 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
121925622 TCTTTTTACC
1 TCATTTTACC
121925632 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:121925733 original size:27 final size:27
Alignment explanation
Indices: 121925665--121925848 Score: 142
Period size: 27 Copynumber: 6.8 Consensus size: 27
121925655 CATCCTACAA
* * * *
121925665 GGGTGTTTTGGTAAATCTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* **
121925692 GGGTATTTCT-ATAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATCAG
*
121925719 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
* *
121925745 AGGGTATTTCGGTAATTTTACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAG
*
121925773 TGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
* * * **
121925800 GGGTGTTATGGTAATTCTACCCTAT-AG
1 GGGTATTTTGGTAATTTTA-CAAATCAG
* *
121925827 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
121925849 TCGAGGGTAA
Statistics
Matches: 121, Mismatches: 29, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
26 4 0.03
27 113 0.93
28 4 0.03
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:121925740 original size:54 final size:54
Alignment explanation
Indices: 121925665--121925795 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
121925655 CATCCTACAA
* * * * ** *
121925665 GGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTCTATAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAACCAG
** *
121925719 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAACCAG
*
121925773 TGGTATTTTGGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
121925796 CTAGGGGTGT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAACCAG
Found at i:121925877 original size:27 final size:27
Alignment explanation
Indices: 121925847--121925938 Score: 157
Period size: 27 Copynumber: 3.4 Consensus size: 27
121925837 GTAATTTCAC
121925847 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
*
121925874 AATCAAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
* *
121925901 AATCGATGGTAAAACAGTAATTTTATA
1 AATCGAGGGTAAAACAGTAATTTTGTA
121925928 AATCGAGGGTA
1 AATCGAGGGTA
121925939 GAACGCCCCC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTTTGTA
Found at i:121926255 original size:27 final size:27
Alignment explanation
Indices: 121926225--121926506 Score: 158
Period size: 27 Copynumber: 10.4 Consensus size: 27
121926215 GTAATTTCAC
* *
121926225 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTATA
* * * *
121926252 AATCAAGTGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATA
* *
121926279 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTATA
*** *
121926306 AATCGAGGGTACTTTGGTAATTTT-TA
1 AATCGAGGGTAAAATAGTAATTTTATA
* ** *
121926332 CAAGTCGAGTGT-ATTTCAGTAATTTTACA
1 -AA-TCGAGGGTAAAAT-AGTAATTTTATA
* *** *
121926361 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTAAAATAGTAATTTTATA
* * *** *
121926389 AACCAAGGGTATTTTAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTATA
*
121926416 AATCGAGGGTAAAA-CGATAATTTTATA
1 AATCGAGGGTAAAATAG-TAATTTTATA
* * *
121926443 AATCGAAGGTAAAAT-GGAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTATA
* ** * *
121926469 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATA
*
121926496 AATCGGGGGTA
1 AATCGAGGGTA
121926507 CTTTGGTAAA
Statistics
Matches: 204, Mismatches: 42, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
26 23 0.11
27 141 0.69
28 36 0.18
29 4 0.02
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTTTATA
Found at i:121926353 original size:28 final size:27
Alignment explanation
Indices: 121926294--121926426 Score: 140
Period size: 28 Copynumber: 4.9 Consensus size: 27
121926284 AGGGTAAAAC
* * *
121926294 AGTAATTCTATAAATCGAGGGTACTTT
1 AGTAATTTTACAAATCGAGGGTATTTT
* * * *
121926321 GGTAATTTTTACAAGTCGAGTGTATTTC
1 AGTAA-TTTTACAAATCGAGGGTATTTT
*
121926349 AGTAATTTTACAAATCAGGGGGTATTTT
1 AGTAATTTTACAAATC-GAGGGTATTTT
* *
121926377 AGTAATTTTACAAACCAAGGGTATTTT
1 AGTAATTTTACAAATCGAGGGTATTTT
**
121926404 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTACAAATCGAGGGTA
121926427 AAACGATAAT
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
27 42 0.49
28 43 0.51
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAATCGAGGGTATTTT
Found at i:121926354 original size:55 final size:54
Alignment explanation
Indices: 121926293--121926426 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 54
121926283 GAGGGTAAAA
* * ** * *
121926293 CAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGAGTGTATTT
1 CAGTAATTTTATAAATCGAGGGTACTTTAGTAA-TTTTACAAACCAAGGGTATTT
* * *
121926348 CAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
1 CAGTAATTTTATAAATC-GAGGGTACTTTAGTAATTTTACAAACCAAGGGTATTT
* *
121926403 TAGTAATTTTGTAAATCGAGGGTA
1 CAGTAATTTTATAAATCGAGGGTA
121926427 AAACGATAAT
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
54 6 0.09
55 46 0.71
56 13 0.20
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (54 bp):
CAGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTACAAACCAAGGGTATTT
Found at i:121929795 original size:30 final size:31
Alignment explanation
Indices: 121929760--121929840 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
121929750 GGTAATTAAA
* * *
121929760 AAAAGTTATAATTTGA-TCATTTAATTATTT
1 AAAAGTTATAATTTAAGTCATTGAACTATTT
* *
121929790 AAAAGTTTTTATTTAAGTCATTGAACTATTT
1 AAAAGTTATAATTTAAGTCATTGAACTATTT
* *
121929821 AAAAGTTTTTATTTAAGTCA
1 AAAAGTTATAATTTAAGTCA
121929841 CTTGGCTATT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 13 0.29
31 32 0.71
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (31 bp):
AAAAGTTATAATTTAAGTCATTGAACTATTT
Found at i:121929850 original size:31 final size:31
Alignment explanation
Indices: 121929776--121929840 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
121929766 TATAATTTGA
* *
121929776 TCATTTAATTATTTAAAAGTTTTTATTTAAG
1 TCATTGAACTATTTAAAAGTTTTTATTTAAG
121929807 TCATTGAACTATTTAAAAGTTTTTATTTAAG
1 TCATTGAACTATTTAAAAGTTTTTATTTAAG
121929838 TCA
1 TCA
121929841 CTTGGCTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (31 bp):
TCATTGAACTATTTAAAAGTTTTTATTTAAG
Found at i:121931735 original size:22 final size:23
Alignment explanation
Indices: 121931700--121931742 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
121931690 AAATTGAGAC
*
121931700 AAAAAAATCACAAGTATCAAACT
1 AAAAAAATCACAAGTACCAAACT
*
121931723 AAAAAAAT-TCAAGTACCAAA
1 AAAAAAATCACAAGTACCAAA
121931743 ATGAATACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.63, C:0.16, G:0.05, T:0.16
Consensus pattern (23 bp):
AAAAAAATCACAAGTACCAAACT
Found at i:121932407 original size:41 final size:41
Alignment explanation
Indices: 121932346--121932429 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
121932336 TTAACCTTCT
* *
121932346 ATTTAAGGATCTAACTCAACTCGACTTCTGATATAATCAAA
1 ATTTAAAGATCTAACCCAACTCGACTTCTGATATAATCAAA
*
121932387 ATTTAAAGATCTAACCCAACTCGTCTTCTGATATAATCAAA
1 ATTTAAAGATCTAACCCAACTCGACTTCTGATATAATCAAA
121932428 AT
1 AT
121932430 CCAATATCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (41 bp):
ATTTAAAGATCTAACCCAACTCGACTTCTGATATAATCAAA
Found at i:121940438 original size:17 final size:17
Alignment explanation
Indices: 121940416--121940448 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
121940406 TTTGGATAGA
121940416 AAATAACAAA-GAAAATC
1 AAATAA-AAAGGAAAATC
121940433 AAATAAAAAGGAAAAT
1 AAATAAAAAGGAAAAT
121940449 AGTGAAAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.73, C:0.06, G:0.09, T:0.12
Consensus pattern (17 bp):
AAATAAAAAGGAAAATC
Found at i:121951027 original size:46 final size:44
Alignment explanation
Indices: 121950930--121951028 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 44
121950920 ATAAATTATG
*
121950930 ATATAAAACTTAATTCAGTTTATTAAAATTTAATTAAAATATAAA
1 ATAT-AAACTTAATTCAGTTTATTAAAATTTAAATAAAATATAAA
*
121950975 ATTATAAACTTAATTCAGTTT-TT-AAATTATAAAATATAAATAATAGA
1 A-TATAAACTTAATTCAGTTTATTAAAATT-T-AAATA-AAAT-ATAAA
121951022 ATATAAA
1 ATATAAA
121951029 TTGTTCAATA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
43 5 0.11
44 3 0.06
45 21 0.45
46 13 0.28
47 5 0.11
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (44 bp):
ATATAAACTTAATTCAGTTTATTAAAATTTAAATAAAATATAAA
Found at i:121954484 original size:26 final size:26
Alignment explanation
Indices: 121954438--121954487 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
121954428 TTCGCTCTTT
121954438 TATATAATATAAACAATAATATATCG
1 TATATAATATAAACAATAATATATCG
121954464 TATATAA-ATAAGAC-ATAAATATAT
1 TATATAATATAA-ACAAT-AATATAT
121954488 TATCATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (26 bp):
TATATAATATAAACAATAATATATCG
Found at i:121954680 original size:21 final size:21
Alignment explanation
Indices: 121954637--121954680 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
121954627 ATATATTATG
* * * *
121954637 TATAAATAGTATAAATTACTA
1 TATAAATAATAAAAAATAATA
121954658 TATAAATAATAAAAAATAATA
1 TATAAATAATAAAAAATAATA
121954679 TA
1 TA
121954681 CATTATTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
TATAAATAATAAAAAATAATA
Found at i:121956278 original size:3 final size:3
Alignment explanation
Indices: 121956270--121956301 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
121956260 TCTTAACAAT
121956270 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
121956302 TTACATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.