Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 49 of 373
Found at i:14335998 original size:38 final size:38
Alignment explanation
Indices: 14335937--14336114 Score: 209
Period size: 38 Copynumber: 4.6 Consensus size: 38
14335927 ATTTGATGTG
*
14335937 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCATGCTGGAATTA
*
14335977 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGG-AATTA
* *
14336015 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
*
14336053 TATCCGGGTTAAATCCCGCAGGCTT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGAATTA
* *
14336091 TATCCGAGCTTAAAGTCCCACAGG
1 TATCCG-GGTTAAA-TCCCGCAGG
14336115 TTTTGTGCTG
Statistics
Matches: 126, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
37 2 0.02
38 95 0.75
39 13 0.10
40 16 0.13
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
Found at i:14336037 original size:76 final size:77
Alignment explanation
Indices: 14335937--14336114 Score: 252
Period size: 76 Copynumber: 2.3 Consensus size: 77
14335927 ATTTGATGTG
*
14335937 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
*
14336001 TCGTGCTGGTAATA
64 TAGTGCTGGTAATA
* *
14336015 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTA
*
14336079 GTGCTGGTATTA
66 GTGCTGGTAATA
* *
14336091 TATCCGAGCTTAAAGTCCCACAGG
1 TATCCG-GGTTAAAGTCCCGCAGG
14336115 TTTTGTGCTG
Statistics
Matches: 90, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
75 1 0.01
76 62 0.69
77 11 0.12
78 16 0.18
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTA
GTGCTGGTAATA
Found at i:14347824 original size:21 final size:21
Alignment explanation
Indices: 14347794--14347849 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
14347784 GTGAGATTTT
*
14347794 GATGTACATGATATGACATGA
1 GATGCACATGATATGACATGA
* **
14347815 TATGCACATGATATGTTATGA
1 GATGCACATGATATGACATGA
14347836 GATGCACATGATAT
1 GATGCACATGATAT
14347850 ACTCATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (21 bp):
GATGCACATGATATGACATGA
Found at i:14347825 original size:11 final size:11
Alignment explanation
Indices: 14347799--14347863 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
14347789 ATTTTGATGT
14347799 ACATGATATG-
1 ACATGATATGC
14347809 ACATGATATGC
1 ACATGATATGC
14347820 ACATGATATG-
1 ACATGATATGC
** *
14347830 TTATGAGATGC
1 ACATGATATGC
*
14347841 ACATGATATAC
1 ACATGATATGC
* *
14347852 TCATTATATGC
1 ACATGATATGC
14347863 A
1 A
14347864 TGGGTTAGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:14347861 original size:32 final size:31
Alignment explanation
Indices: 14347801--14347861 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
14347791 TTTGATGTAC
* *
14347801 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
14347832 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
14347862 CATGGGTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:14350166 original size:29 final size:29
Alignment explanation
Indices: 14350121--14350190 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
14350111 GTGGTTGTTT
* * *
14350121 TATGTTATATATGAGCCCATGTGGCGGAA
1 TATGTTATATGTCAGCCCATGTGGCAGAA
** *
14350150 TATGTTATATGTCAGCCTTTGTGGTAGAA
1 TATGTTATATGTCAGCCCATGTGGCAGAA
*
14350179 TAGGTTATATGT
1 TATGTTATATGT
14350191 AGAAGCCTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (29 bp):
TATGTTATATGTCAGCCCATGTGGCAGAA
Found at i:14350201 original size:31 final size:29
Alignment explanation
Indices: 14350147--14350204 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
14350137 CCATGTGGCG
* *
14350147 GAATATGTTATATGTCAGCCTTTGTGGTA
1 GAATAGGTTATATGTAAGCCTTTGTGGTA
14350176 GAATAGGTTATATGTAGAAGCCTTTGTGG
1 GAATAGGTTATATGT--AAGCCTTTGTGG
14350205 ATGTTCTCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 14 0.56
31 11 0.44
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.38
Consensus pattern (29 bp):
GAATAGGTTATATGTAAGCCTTTGTGGTA
Found at i:14350296 original size:55 final size:55
Alignment explanation
Indices: 14350223--14350346 Score: 178
Period size: 55 Copynumber: 2.3 Consensus size: 55
14350213 TGTTATATGG
* *
14350223 AGCCTTAGTGGTCGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
1 AGCCTTTGTGGTTGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
* ** * *
14350278 AGCCTTTGTGGTTGACTCTATGAATGCGCTTTTGTGGTGAAATATGTTAAGTTAG
1 AGCCTTTGTGGTTGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
14350333 AGCCTTTGT-GTTGA
1 AGCCTTTGTGGTTGA
14350347 TTCTGTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 5 0.08
55 57 0.92
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (55 bp):
AGCCTTTGTGGTTGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
Found at i:14355715 original size:133 final size:133
Alignment explanation
Indices: 14355477--14355782 Score: 542
Period size: 133 Copynumber: 2.3 Consensus size: 133
14355467 ATATATTTCT
14355477 AAAAATATTTTTATTTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATT
1 AAAAATATTTTTA-TTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATT
14355542 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAAATGATTT
65 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAAATGATTT
14355607 CTCA
130 CTCA
14355611 AAAAATATTTTTATTTCCCGGAATATTATTTACCTATTTAGTTAATATTGTAA-TTCTCTCCATT
1 AAAAATATTTTTATTT-CCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATT
* *
14355675 TTAAATTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATAAAATTGATTT
65 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAAATGATTT
14355740 CTCA
130 CTCA
* *
14355744 AAAAATATTTTTATTTTCGGAAATATTATTTACCGATTT
1 AAAAATATTTTTATTTCCGG-AATATTATTTACCTATTT
14355783 TTAAATGAAA
Statistics
Matches: 166, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
132 3 0.02
133 114 0.69
134 49 0.30
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.44
Consensus pattern (133 bp):
AAAAATATTTTTATTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATTT
TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAAATGATTTC
TCA
Found at i:14359886 original size:83 final size:83
Alignment explanation
Indices: 14359745--14359898 Score: 272
Period size: 83 Copynumber: 1.9 Consensus size: 83
14359735 ATACTTTGGA
* *
14359745 AAATTTGCGATTACAAGTAGGTTTGGACAATTAAGATTGTGATCGAGAAGCTTCTATCAAAGATA
1 AAATTTGCGATTAAAAGTAGGTTTGGACAATTAAGATTGTGATCGAGAAGCTTATATCAAAGATA
14359810 AGCAGACCATGTTGAGTC
66 AGCAGACCATGTTGAGTC
* *
14359828 AAATTTGCGATTAAAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTATATCAAAGATA
1 AAATTTGCGATTAAAAGTAGGTTTGGACAATTAAGATTGTGATCGAGAAGCTTATATCAAAGATA
14359893 AGCAGA
66 AGCAGA
14359899 ATTTGGTGGT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (83 bp):
AAATTTGCGATTAAAAGTAGGTTTGGACAATTAAGATTGTGATCGAGAAGCTTATATCAAAGATA
AGCAGACCATGTTGAGTC
Found at i:14360178 original size:135 final size:132
Alignment explanation
Indices: 14360021--14360321 Score: 521
Period size: 134 Copynumber: 2.2 Consensus size: 132
14360011 TATATTTCTG
14360021 AAAATATTTTTATTTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATTT
1 AAAATATTTTTA-TTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAA-TTCTCTCCATTT
14360086 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
64 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
14360151 TCAA
129 TCAA
14360155 AAAATATTTTTTATTTCCCGGAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
1 AAAATA-TTTTTATTT-CCGGAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
* * *
14360220 TAAATTATTTTTCAATAAAATATTTACTCTAACCCAAAAATATTTAAAACCATAAGATTGATTTC
64 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
14360285 TCAA
129 TCAA
*
14360289 AAAATATTTTTATTTTCGGAAATATTATTTACC
1 AAAATATTTTTATTTCCGG-AATATTATTTACC
14360322 GGTTTTTAAA
Statistics
Matches: 160, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
132 3 0.02
133 22 0.14
134 93 0.58
135 42 0.26
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (132 bp):
AAAATATTTTTATTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTTTA
AATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTCTC
AA
Found at i:14364714 original size:58 final size:59
Alignment explanation
Indices: 14364646--14364766 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
14364636 GGGAGGGACA
* * *
14364646 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAATGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
14364704 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
14364763 GGGA
1 GGGA
14364767 TTGGGGAGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:14364832 original size:24 final size:24
Alignment explanation
Indices: 14364805--14364851 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14364795 TATATCCCAG
* * *
14364805 GATGGCTCGCCGGATCATCGCCGA
1 GATGGATCGCCAGATCACCGCCGA
14364829 GATGGATCGCCAGATCACCGCCG
1 GATGGATCGCCAGATCACCGCCG
14364852 GGAACCTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15
Consensus pattern (24 bp):
GATGGATCGCCAGATCACCGCCGA
Found at i:14365435 original size:5 final size:5
Alignment explanation
Indices: 14365427--14365462 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
14365417 TACAAGAAGT
*
14365427 ATGGC ATGGC ATGGC ATGGC ATGGC ACGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
14365463 CGGTACGGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.39, T:0.17
Consensus pattern (5 bp):
ATGGC
Found at i:14365447 original size:15 final size:15
Alignment explanation
Indices: 14365427--14365472 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
14365417 TACAAGAAGT
*
14365427 ATGGCATGGCATGGC
1 ATGGCATGGCACGGC
14365442 ATGGCATGGCACGGC
1 ATGGCATGGCACGGC
* *
14365457 ATGGCACGGTACGGC
1 ATGGCATGGCACGGC
14365472 A
1 A
14365473 GAAAATTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.39, T:0.15
Consensus pattern (15 bp):
ATGGCATGGCACGGC
Found at i:14378726 original size:58 final size:59
Alignment explanation
Indices: 14378634--14378755 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
14378624 TCGCTCCCCA
* * *
14378634 ATCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGAATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
* * * *
14378693 GTCCC-AAAGGTAGGATTCGAATATCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGAATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
14378751 ATCCC
1 ATCCC
14378756 TGTCCCTCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCGAATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
Found at i:14379501 original size:42 final size:43
Alignment explanation
Indices: 14379433--14380761 Score: 1585
Period size: 43 Copynumber: 31.4 Consensus size: 43
14379423 GCCTTGGACG
* * * * **
14379433 CCATCGGCAACCTAGGACGTCGGTCGTGTGGGAGCCTCAAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
14379476 CCATCGGC-ACCTAGACCCTTGGTCGTGCGGGAGCCTCCGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * * *
14379518 CCATCAGC-ACCTTGGTGCTTGGAT-GTGCAGGAGCCTCAGTCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
14379560 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
14379603 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAG-CTTGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
14379645 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
14379687 CCATCAGC-ACCTTGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
14379729 CCATCGGTAACCTAGGCCCTTGGCCGTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
14379772 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
14379815 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
14379858 CCATCGGC-ACCTAGGCCCTTGGTCGT----GAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
14379896 CCATCAGTAACCTAGCCCCTTGGTCGTGCGGGAGCTTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** *
14379939 CCATCGGCAACCTAGGCCCCTGGTCGTGCAAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
14379981 CCATCGGCAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
14380024 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
14380066 CCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCTTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
14380109 CCATCTGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
14380152 CCATCGACAACCTAGGTCCTTGGTCATGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
14380195 CCATCGGC-TCCTAGGCCTTTGGTCATGCGGGAGCTTGGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
14380237 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
14380280 CCATTAGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
14380322 CCATTAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
14380364 CCATCAGC-ACCTAGACCCTTGGTCGTGTGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
14380406 CCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCTTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
14380448 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
14380491 CCATCGGCAACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
14380534 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * ** *
14380576 CCATTTGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
14380618 CCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
14380661 CCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * ** * * *
14380704 GCATTGG-TACCTTGGTGCTT-GTATGTGCGGGAGCCTTGGACA
1 CCATCGGCAACCTAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCA
14380746 CCATCGGCAACCTAGG
1 CCATCGGCAACCTAGG
14380762 ACATTGGATG
Statistics
Matches: 1107, Mismatches: 151, Indels: 56
0.84 0.11 0.04
Matches are distributed among these distances:
38 18 0.02
39 17 0.02
40 1 0.00
41 58 0.05
42 435 0.39
43 577 0.52
44 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (43 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:14379573 original size:85 final size:86
Alignment explanation
Indices: 14379433--14380761 Score: 1585
Period size: 85 Copynumber: 15.7 Consensus size: 86
14379423 GCCTTGGACG
* * * * ** *
14379433 CCATCGGCAACCTAGGACGTCGGTCGTGTGGGAGCCTCAAGCACCATCGGC-ACCTAGACCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
14379497 GTCGTGCGGGAGCCTCCGGCA
66 GTCGTGCGGGAGCCTCGGGCA
* * ** * * *
14379518 CCATCAGC-ACCTTGGTGCTTGGAT-GTGCAGGAGCCTCAGTCACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT
14379581 GGTCGTGCGGGAGCCTCGGGCA
65 GGTCGTGCGGGAGCCTCGGGCA
* * * *
14379603 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAG-CTTGGGTACCATCGGC-ACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
14379666 GTCGTGCGGGAGCCTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
* * *
14379687 CCATCAGC-ACCTTGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
14379751 GCCGTACGGGAGCCTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
*
14379772 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
14379837 GTCGTGCGGGAGCCTCGGACA
66 GTCGTGCGGGAGCCTCGGGCA
* * * *
14379858 CCATCGGC-ACCTAGGCCCTTGGTCGT----GAGCCTCGGACACCATCAGTAACCTAGCCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
14379918 GTCGTGCGGGAGCTTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
* ** *
14379939 CCATCGGCAACCTAGGCCCCTGGTCGTGCAAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
14380003 GTCATACGGGAGCCTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
14380024 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
14380088 GTCGTGCAGGAGCTTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
* * * * *
14380109 CCATCTGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGTACCATCGACAACCTAGGTCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
14380174 GTCATGCGAGAGCCTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
* * * * * *
14380195 CCATCGGC-TCCTAGGCCTTTGGTCATGCGGGAGCTTGGGGCACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
14380259 GTCGTGCGGGAGCCTCGAGCA
66 GTCGTGCGGGAGCCTCGGGCA
** * **
14380280 CCATTAGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGAGCACCATTAGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
14380344 GTCGTGCGAGAGCCTCGGG-A
66 GTCGTGCGGGAGCCTCGGGCA
* * * * * * **
14380364 CCATCAGC-ACCTAGACCCTTGGTCGTGTGGGAGCCTCGGCCACCATTGGC-ACCTTGGTGCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
14380427 GAT-GTGCGGGAGCTTCGGACA
66 G-TCGTGCGGGAGCCTCGGGCA
* *
14380448 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
14380513 GTCGTGCGGGAGCCTCGGGCA
66 GTCGTGCGGGAGCCTCGGGCA
* * * ** * **
14380534 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATTTGC-ACCTTGGTGCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
14380597 GAT-GTGCGGGAGCCTCGGACA
66 G-TCGTGCGGGAGCCTCGGGCA
* * *
14380618 CCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTT
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTT
*
14380682 GGAT-GTGCGGGAGCCTCGAGCA
65 GG-TCGTGCGGGAGCCTCGGGCA
* * * * ** * * *
14380704 GCATTGG-TACCTTGGTGCTT-GTATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGG
1 CCATCGGCAACCTAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
14380762 ACATTGGATG
Statistics
Matches: 1065, Mismatches: 153, Indels: 51
0.84 0.12 0.04
Matches are distributed among these distances:
81 57 0.05
82 17 0.02
83 55 0.05
84 199 0.19
85 475 0.45
86 262 0.25
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (86 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGGGCA
Found at i:14380798 original size:85 final size:85
Alignment explanation
Indices: 14380643--14380806 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 85
14380633 GACCTTGGTC
* * * * * * * *
14380643 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGCAGCAT
1 GTGCGGGAGCCTCGGACACCATCGGCACCTAGGTACATTGGATGCGCGGGAGCCTAGAACAGCAG
* *
14380708 TGGTACCTTGGTGCTTGTAT
66 GGGTACCCTGGTGCTTGTAT
* * *
14380728 GTGCGGGAGCCTTGGACACCATCGGCAACCTAGG-ACATTGGATGCGCGGGTGCCTAGAATAGCA
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGTACATTGGATGCGCGGGAGCCTAGAACAGCA
14380792 GGGGTACCCTGGTGC
65 GGGGTACCCTGGTGC
14380807 CTCGGATGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
85 59 0.91
86 6 0.09
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGACACCATCGGCACCTAGGTACATTGGATGCGCGGGAGCCTAGAACAGCAG
GGGTACCCTGGTGCTTGTAT
Found at i:14380805 original size:128 final size:128
Alignment explanation
Indices: 14379474--14380815 Score: 385
Period size: 128 Copynumber: 10.6 Consensus size: 128
14379464 GAGCCTCAAG
* * * * * * *
14379474 CACCATCGGC-ACCTA-GACCCTTGGTCGTGCGGGAGCCTCCG-GCACCATCAGCACCTTGGTG-
1 CACCATCGGCAACCTAGGA-CATTGGTCGCGCGGGAGCCT-AGAACACCAGCGGCACCCTGGTGC
* * * **
14379535 CTTGGATGTGC-AGGAGCCTC-AGTCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCT
64 CTTGGATGTGCGA-GAACCTCGAG-CACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCT
*
14379597 CGGG
125 CGGA
* ** * * * *** * *
14379601 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAG-CTTGGGTACCATCGGCA-CCTAGG-CCC
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCT-GGTGCC
* * * ** **
14379663 TTGG-TCGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGCCCTTGG-TCGTGCGGGAGCCTCGG
65 TTGGAT-GTGCGAGAACCTCGAGCACCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
*
14379726 G
128 A
* * * * ** * ** * * *
14379727 CACCATCGGTAACCTAGGCCCTTGGCCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCC
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCT-GGTGCC
* * * * * * **
14379791 CTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
65 TTGGAT-GTGCGAGAACCTCGAGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
14379854 GA
127 GA
* * * * * * * * * * **
14379856 CACCATCGGC-ACCTAGGCCCTTGGT----CGTGAGCCTCGGACACCATCAGTAACCTAGCCCCT
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCCT
* * * * * * ** * **
14379916 TGG-TCGTGCGGGAGCTTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCAAGAGCCTCGG
66 TGGAT-GTGCGAGAACCTCGAGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
14379979 -
128 A
* * * *** * ** * *
14379979 TACCATCGGCAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGCA-CCTAGG-CCC
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCT-GGTGCC
* * * * * ** * *
14380042 TTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCAGGAGCTTCG
65 TTGGAT-GTGCGAGAACCTCGAGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
*
14380105 GG
127 GA
* * * * * * *** * * *
14380107 CACCATCTGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGTACCATCGACAACCTAGGT-CC
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCT-GGTGCC
* * * * * * * * * *
14380171 TTGG-TCATGCGAGAGCCTCGGGCACCATCGGCTCCTAGG-CCTTTGG-TCATGCGGGAGCTTGG
65 TTGGAT-GTGCGAGAACCTCGAGCACCATTGGCACCTTGGTGC-TTGGAT-GTGCGGGAGCCTCG
*
14380233 GG
127 GA
* ** * * * *** * * *
14380235 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCATTAGCAACCTAG-GCCC
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCCT
* * * * ** *
14380299 TGG-TCGTGCGGGAGCCTCGAGCACCATTAGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG
66 TGGAT-GTGCGAGAACCTCGAGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
14380362 -
128 A
* * * * * * ** ** *
14380362 GACCATCAGC-ACCTA-GACCCTTGGTCGTGTGGGAGCCTCGGCCACCATTGGCACCTTGGTG-C
1 CACCATCGGCAACCTAGGA-CATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCC
* * * * * **
14380424 TTGGATGTGCGGGAGCTTCG-GACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
65 TTGGATGTGCGAGAACCTCGAG-CACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
*
14380487 GG
127 GA
* ** * * * ** * * *
14380489 CACCATCGGCAACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCT
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCCT
* *
14380553 T-GATCGTGCGAGAACCTCGGGCACCATTTGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
66 TGGAT-GTGCGAGAACCTCGAGCACCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* * * ** * *
14380616 CACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCT
1 CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCCT
* * * * * *
14380681 TGGATGTGCGGGAGCCTCGAGCAGCATTGGTACCTTGGTGCTTGTATGTGCGGGAGCCTTGGA
66 TGGATGTGCGAGAACCTCGAGCACCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* * * * *
14380744 CACCATCGGCAACCTAGGACATTGGAT-GCGCGGGTGCCTAGAATAGCAGGGGTACCCTGGTGCC
1 CACCATCGGCAACCTAGGACATTGG-TCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCC
*
14380808 TCGGATGT
65 TTGGATGT
14380816 ATGGGCTAAA
Statistics
Matches: 1035, Mismatches: 141, Indels: 77
0.83 0.11 0.06
Matches are distributed among these distances:
123 10 0.01
124 101 0.10
125 2 0.00
126 160 0.15
127 263 0.25
128 413 0.40
129 86 0.08
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (128 bp):
CACCATCGGCAACCTAGGACATTGGTCGCGCGGGAGCCTAGAACACCAGCGGCACCCTGGTGCCT
TGGATGTGCGAGAACCTCGAGCACCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
Found at i:14391881 original size:46 final size:46
Alignment explanation
Indices: 14391831--14392003 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
14391821 TGGTTGAGCA
14391831 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
14391877 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14391922 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14391970 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14392004 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14391987 original size:93 final size:93
Alignment explanation
Indices: 14391828--14391998 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
14391818 GGATGGTTGA
* *
14391828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14391893 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
14391921 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14391986 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
14391999 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:14394518 original size:27 final size:27
Alignment explanation
Indices: 14394426--14394575 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
14394416 ATATTGAGCC
* *
14394426 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
14394453 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
14394481 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
14394508 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
14394535 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
14394562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14394576 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:14402531 original size:27 final size:27
Alignment explanation
Indices: 14402439--14402588 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
14402429 ATATTGAGCC
* *
14402439 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
14402466 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
14402494 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
14402521 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
14402548 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
14402575 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14402589 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:14415353 original size:11 final size:11
Alignment explanation
Indices: 14415325--14415372 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
14415315 CAGCGTATCG
*
14415325 CCCCCCCGCCG
1 CCCCCCCGCCC
14415336 CCCCCCCGCCC
1 CCCCCCCGCCC
*
14415347 CCCCCCCATCCC
1 CCCCCCC-GCCC
14415359 CCTCCCCC-CCC
1 CC-CCCCCGCCC
14415370 CCC
1 CCC
14415373 GGGGGCATCG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
10 1 0.03
11 22 0.67
12 5 0.15
13 5 0.15
ACGTcount: A:0.02, C:0.88, G:0.06, T:0.04
Consensus pattern (11 bp):
CCCCCCCGCCC
Found at i:14415359 original size:19 final size:20
Alignment explanation
Indices: 14415322--14415372 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
14415312 CCACAGCGTA
* *
14415322 TCGCCCCCCCGCCGCCCCCC
1 TCGCCCCCCCCCCACCCCCC
*
14415342 -CGCCCCCCCCCCATCCCCC
1 TCGCCCCCCCCCCACCCCCC
14415361 TC-CCCCCCCCCC
1 TCGCCCCCCCCCC
14415373 GGGGGCATCG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.02, C:0.84, G:0.08, T:0.06
Consensus pattern (20 bp):
TCGCCCCCCCCCCACCCCCC
Found at i:14418236 original size:14 final size:14
Alignment explanation
Indices: 14418217--14418248 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14418207 AGGTCATTTA
14418217 GCCCAACCAAACTG
1 GCCCAACCAAACTG
14418231 GCCCAACCAAACTG
1 GCCCAACCAAACTG
14418245 GCCC
1 GCCC
14418249 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:14423355 original size:14 final size:14
Alignment explanation
Indices: 14423336--14423367 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14423326 AGGTCATTTA
14423336 GCCCAACCAAACTG
1 GCCCAACCAAACTG
14423350 GCCCAACCAAACTG
1 GCCCAACCAAACTG
14423364 GCCC
1 GCCC
14423368 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:14425163 original size:85 final size:85
Alignment explanation
Indices: 14425053--14426372 Score: 998
Period size: 85 Copynumber: 15.5 Consensus size: 85
14425043 TTTTCTTTAG
* * ** * * * * *
14425053 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCCGTAC-ATCCAACGTCCTAG
1 CCCGCACATCC-AAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* *
14425117 GTTGCCTATGGTGTCCGAGGCT
64 GTTACCGATGGTGTCCGAGGCT
* * * * * *
14425139 CCCGCACATCCAAGCACCAAGGTGCCAATGCTACTCGAGGCTCCCGCAC-ATCCGAGGCACCAAG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAG
* *
14425203 G-TGCCGATGGTGCCCGAGGCT
64 GTTACCGATGGTGTCCGAGGCT
** * * * *
14425224 CCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
14425288 GTTATCGATGGTGTCCGAGGCT
64 GTTACCGATGGTGTCCGAGGCT
* *
14425310 CCGGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
14425375 TACCGATGGTGTCCCAGGCT
66 TACCGATGGTGTCCGAGGCT
14425395 CCCGCACATCCAAGCACCAAGGTGCCGATTG-TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGA-TGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
14425459 -TGCCGATGGT-CCCGAGGCT
65 TTACCGATGGTGTCCGAGGCT
* ** * * * *
14425478 CTCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGG
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * * *
14425542 GTGCCGATGGTGCCCGAGGCA
65 TTACCGATGGTGTCCGAGGCT
* ** * * *
14425563 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGCCCTA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGG-CCTA
*
14425626 GGTTACCGATGGT-CCCGAGGCT
63 GGTTACCGATGGTGTCCGAGGCT
* * ** * * * ** * * *
14425648 CCCGTACGA-CCAGGGGCCTAGGTTGTCGATGGTGTACGA-GCTCCCGTATGACCAGGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
14425711 GTT-TCGATGGTGTCTGAGGCT
64 GTTACCGATGGTGTCCGAGGCT
* ** * * * * * *
14425732 CCCGCACGA-CCAGGGGCCTAGGTTGCTGATGGTGCCCCAGGCTCTCGCAGGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
14425796 GTTGCCGATGGTGCCCGAGGCT
64 GTTACCGATGGTGTCCGAGGCT
** * * * * *
14425818 CCCGCACGA-CCAAGGGCCTAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCAATGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
14425882 GTTACCGATAGTGTCCCAGGCT
64 GTTACCGATGGTGTCCGAGGCT
* * *
14425904 CCCGCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGTCTAGG-
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
14425968 TGCCGATGGT-CCCGAGGCT
66 TACCGATGGTGTCCGAGGCT
* * ** * * * * * *
14425987 CTCACACGA-CCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGGCCTAGG
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
14426051 -AAGCCGATGGTGCCCGAGGCT
65 TTA-CCGATGGTGTCCGAGGCT
* ** * * *
14426072 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
14426136 GTTGCCGATGGTGTCCGA-GCT
64 GTTACCGATGGTGTCCGAGGCT
** ** * ** * * * * * *
14426157 TTCATACGA-CCAGGGGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGG
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * *
14426221 TTGCCGATGGTGCCCCAGGCT
65 TTACCGATGGTGTCCGAGGCT
* * ** * *
14426242 CTCGCAGGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCA-CATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
14426306 GTTTCCGATGGTGCCCAAGGCT
64 GTTACCGATGGTGTCCGAGGCT
** * * *
14426328 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCC
14426373 TGCATATCCA
Statistics
Matches: 1061, Mismatches: 146, Indels: 54
0.84 0.12 0.04
Matches are distributed among these distances:
82 2 0.00
83 126 0.12
84 149 0.14
85 405 0.38
86 378 0.36
87 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.16
Consensus pattern (85 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TACCGATGGTGTCCGAGGCT
Found at i:14425984 original size:467 final size:466
Alignment explanation
Indices: 14425174--14426414 Score: 1725
Period size: 467 Copynumber: 2.7 Consensus size: 466
14425164 CAATGCTACT
** * * * *
14425174 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCACGA-CC-AGGGGCCTAGGTTGCCGATGGTGTCCGA-GCTCCCGTACGACCAG
* * * * *
14425237 GGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGGGCCTAGGTT-ATCGATGGTG
63 GGGCCTAGGTT-CCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCT-GATGGTG
* * * ** *
14425301 TCCGAGGCTC-CGGCA-CATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC
126 CCCCAGGCTCTC-GCAGGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC
* * * *
14425363 AAGGGCCTAGGTTACCGATGGTGTCCCAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATTG
189 AAGGGCCTAGGTTTCCGATGGTG-CCCAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATAG
** * *
14425426 TG-CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGAC
251 TGTCCC-AGGCTCCCGCAC-ATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* * *
14425488 CAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGT
314 CAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTA-GCTGCCGATGGT
* ** *
14425553 GCCCGAGGCACCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTA
378 GCCCGAGGCACCCGCAAGACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCCCGCACGACCA
14425618 GGGCCCTAGGTTACCGATGGT-CC
443 GGGCCCTAGGTTACCGATGGTGCC
* * * *
14425641 CGAGGCTCCCGTACGACCAGGGGCCTAGGTTGTCGATGGTGTACGAGCTCCCGTATGACCAGGGG
1 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGCTCCCGTACGACCAGGGG
*
14425706 CCTAGGTTTCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCCA
66 CCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCCA
14425771 GGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
131 GGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* *
14425836 TAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCAATGGCCTAGGTTACCGATAGTGTCCCAG
196 TAGGTTTCCGATGGTGCCC-AGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATAGTGTCCCAG
*
14425901 GCTCCCGCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGTCTA
259 GCTCCCGCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
*
14425966 GGTGCCGATGGT-CCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCTC
324 GGTGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCAC
* *
14426030 TCGCAAGACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
389 CCGCAAGACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCCTAGGT
*
14426095 TGCCGATGGTGCC
454 TACCGATGGTGCC
** *
14426108 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGCTTTCATACGACCAGGGG
1 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGCTCCCGTACGACCAGGGG
*
14426173 CCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCCA
66 CCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCCA
14426238 GGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
131 GGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* *
14426303 TAGGTTTCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAG
196 TAGGTTTCCGATGGTGCCC-AGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATAGTGTCCCAG
* * * * * *
14426368 GCTCCTGCATATCCAAGGCACCAAGGTACCGATGCTGCTCGAGGCTC
259 GCTCCCGCACATCCAA-GAACCAAGGTGCCGATGGTGCCCGAGGCTC
14426415 TTGCACCACT
Statistics
Matches: 694, Mismatches: 65, Indels: 29
0.88 0.08 0.04
Matches are distributed among these distances:
465 68 0.10
466 198 0.29
467 359 0.52
468 69 0.10
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (466 bp):
CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGCTCCCGTACGACCAGGGG
CCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCCA
GGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
TAGGTTTCCGATGGTGCCCAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATAGTGTCCCAGGC
TCCCGCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
TGCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCACCC
GCAAGACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCCTAGGTTA
CCGATGGTGCC
Found at i:14426088 original size:509 final size:509
Alignment explanation
Indices: 14425204--14426376 Score: 1845
Period size: 509 Copynumber: 2.3 Consensus size: 509
14425194 GGCACCAAGG
*
14425204 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * ** *
14425269 GGCACGACCAAGGGCCTAGGTTATCGATGGTGTCCGAGGCTCCGGCAC-ATCCAAGCACCAAGG-
66 -GCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
14425332 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCCAGGCTCC
129 TGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCCAGGCTCC
* *
14425397 CGCACATCCAAGCACCAAGGTGCCGATTGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGC
194 CGCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGC
* * *
14425462 CGATGGTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCAC
259 CGATGGTCCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCTCTCGCAA
**
14425527 GACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGCCTAGGTTGCCGA
324 GACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGCCTAGGTTGCCGA
* *
14425592 TGGTGCCCGAGGCTCCCGCACGACTAGGGCCCTAGGTTACCGATGGT-CCCGAGGCTCCCGTACG
389 TGGTGCCCGAGGCTCCCGCACGACCAGGGCCCTAGGTTACCGATGGTGCCCGA-GCTCCCATACG
* * *
14425656 ACCAGGGGCCTAGGTTGTCGATGGTGTAC-GA-GCTCCCGTATGACCAGGGGCCTAGGT
453 ACCAGGGGCCTAGGTT-CCGATGGTGT-CTGAGGCTCCCGCACGACCAGGGGCCTAGGT
* * * * * *
14425713 T-TCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCCAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC-
* *
14425777 CGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
65 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* *
14425842 TCCGATGGTGCCCGAGGCTCCTGCACGACCAATGGCCTAGGTTACCGATAGTGTCCCAGGCTCCC
130 GCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCCAGGCTCCC
*
14425907 GCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGTCTAGGTGCC
195 GCACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCC
14425972 GATGGTCCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCTCTCGCAAG
260 GATGGTCCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCTCTCGCAAG
*
14426037 ACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGAT
325 ACCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGCCTAGGTTGCCGAT
* * * **
14426102 GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGCTTTCATACGAC
390 GGTGCCCGAGGCTCCCGCACGACCAGGGCCCTAGGTTACCGATGGTGCCCGAGCTCCCATACGAC
14426167 CAGGGGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGT
455 CAGGGGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGT
* * *
14426222 TGCCGATGGTGCCCCAGGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-C
* *
14426287 CGCACGACCAAGGGCCTAGGTTTCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTT
65 CGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
*
14426352 GCCGATGGTGTCCGAGGCTCCTGCA
130 GCCGATGGTGCCCGAGGCTCCTGCA
14426377 TATCCAAGGC
Statistics
Matches: 604, Mismatches: 52, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
507 1 0.00
508 118 0.20
509 343 0.57
510 141 0.23
511 1 0.00
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16
Consensus pattern (509 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
GCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
CCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCCAGGCTCCCG
CACATCCAAGAACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCG
ATGGTCCCGAGGCTCTCACACGACCAAGGGCCTAGCTGCCGATGGTGCCCGAGGCTCTCGCAAGA
CCAGGGGCCTAGGAAGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGGCCTAGGTTGCCGATG
GTGCCCGAGGCTCCCGCACGACCAGGGCCCTAGGTTACCGATGGTGCCCGAGCTCCCATACGACC
AGGGGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGT
Found at i:14426385 original size:43 final size:43
Alignment explanation
Indices: 14425112--14426372 Score: 1517
Period size: 43 Copynumber: 29.7 Consensus size: 43
14425102 CATCCAACGT
* * **
14425112 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * * *
14425155 CCAAGG-TGCCAATGCTACTCGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
*
14425198 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14425240 CCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * **
14425283 CCTAGGTTATCGATGGTGTCCGAGGCTCCGGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
14425326 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
14425368 CCTAGGTTACCGATGGTGTCCC-AGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAAGGG
* *
14425411 CCAAGG-TGCCGATTGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14425453 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14425494 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14425536 CCTAGGGTGCCGATGGTGCCCGAGGCACCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14425579 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14425621 CCCTAGGTTACCGATGGT-CCCGAGGCTCCCGTACGACCAGGGG
1 -CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * *
14425664 CCTAGGTTGTCGATGGTGTACGA-GCTCCCGTATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
14425706 CCTAGGTT-TCGATGGTGTCTGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
14425748 CCTAGGTTGCTGATGGTGCCCCAGGCTCTCGCAGGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
14425791 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14425834 CCTAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCAATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
14425877 CCTAGGTTACCGATAGTGTCCC-AGGCTCCCGCAC-ATCCAAGAA
1 CCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAAGGG
*
14425920 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14425962 TCTAGG-TGCCGATGGT-CCCGAGGCTCTCACACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
14426003 CCTA-GCTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
14426045 CCTAGGAAGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14426088 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** ** *
14426131 CCTAGGTTGCCGATGGTGTCCGA-GCTTTCATACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14426173 CCTAGGTT-CCGATGGTGTCTGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14426215 CCTAGGTTGCCGATGGTGCCCCAGGCTCTCGCAGGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
14426258 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14426301 CCTAGGTTTCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14426344 CCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCC
14426373 TGCATATCCA
Statistics
Matches: 1068, Mismatches: 124, Indels: 52
0.86 0.10 0.04
Matches are distributed among these distances:
40 1 0.00
41 107 0.10
42 338 0.32
43 615 0.58
44 7 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:14427217 original size:58 final size:58
Alignment explanation
Indices: 14427127--14427237 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
14427117 GGGAGGGACA
*
14427127 GGGACGATTCATTCATTGTTGGGTACCAAACATGCAACGGTATCTGAATTCTAGCTTT
1 GGGACGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCTGAATTCTAGCTTT
* * * *
14427185 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTTAATTCTA
1 GGGACGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCTGAATTCTA
14427238 CATTTTGGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCTGAATTCTAGCTTT
Found at i:14427335 original size:24 final size:24
Alignment explanation
Indices: 14427282--14427335 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
14427272 TTTGTATATC
* *
14427282 CCGGGATGGATCGCCAGATCATCG
1 CCGGGATGGATCGCCAGAGCACCG
* * *
14427306 CTGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCAGAGCACCG
14427330 CCGGGA
1 CCGGGA
14427336 ACCTAACCGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.39, T:0.15
Consensus pattern (24 bp):
CCGGGATGGATCGCCAGAGCACCG
Found at i:14428340 original size:22 final size:22
Alignment explanation
Indices: 14428289--14428354 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
14428279 GGTATTTGAG
* *
14428289 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
14428310 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
14428332 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
14428355 TCAAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:14432282 original size:17 final size:17
Alignment explanation
Indices: 14432260--14432307 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
14432250 TTTCATTCTC
14432260 TTTTTTGAATTTTCTTT
1 TTTTTTGAATTTTCTTT
* *
14432277 TTTTTTCATTTTTCTTT
1 TTTTTTGAATTTTCTTT
* *
14432294 TCTTTTGTATTTTC
1 TTTTTTGAATTTTC
14432308 GCTCTTTTCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.77
Consensus pattern (17 bp):
TTTTTTGAATTTTCTTT
Found at i:14441955 original size:43 final size:43
Alignment explanation
Indices: 14441393--14441942 Score: 681
Period size: 42 Copynumber: 13.4 Consensus size: 43
14441383 CTCCCGGCAC
14441393 ATGGTG-CCGAGGCT-CCG--C-ACCAA-GGCCTAGG-T-CCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*
14441428 ATGGTG--CGAGGCTCCCGCAC-ACCAA--GCCCAGG-TGCC-
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*
14441464 ATGGTG-CCGAGGCT-CCGCACGACCAA-GGCCTAGGTTACCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
** *
14441504 ATGGTGTCCC-AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCG
1 ATGGTG-CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
14441546 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*
14441588 ATGGT-CCCGAGGCTCTCGCACGACC-AGGGCCTAGG-TGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* *
14441628 ATGGTGCTCGAGGCTCCCGCACGACCAAGGGTCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
14441671 ATGGTGCCCGAGGCTCCCGCACGACC-AGGGACCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCG
*
14441714 ATGGT-CCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * *
14441756 ATGGTGTCCGA-GCTCCCGTACGACCAGGGGCCTAGGTT-CCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * * *
14441797 ATGGTGTCTGAGGCTCCCGCACCACCAGGGGCCTTGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
**
14441840 ATGGTGCCCGAGGCTGTCGCACGACCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*
14441883 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCA
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*
14441926 ATGGTGTCCGAGGCTCC
1 ATGGTGCCCGAGGCTCC
14441943 TGCATATCCA
Statistics
Matches: 457, Mismatches: 34, Indels: 40
0.86 0.06 0.08
Matches are distributed among these distances:
34 7 0.02
35 9 0.02
36 19 0.04
37 20 0.04
38 6 0.01
39 3 0.01
40 26 0.06
41 59 0.13
42 154 0.34
43 154 0.34
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.16
Consensus pattern (43 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
Found at i:14442793 original size:58 final size:59
Alignment explanation
Indices: 14442696--14442816 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
14442686 GGGAGGGACA
* *
14442696 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* * *
14442754 GGGACGGTTCATTCATTATTGGGTACCGAATATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
14442813 GGGA
1 GGGA
14442817 TTGGTCGTCG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:14454544 original size:45 final size:46
Alignment explanation
Indices: 14454435--14454552 Score: 139
Period size: 46 Copynumber: 2.6 Consensus size: 46
14454425 AGCTTCAGTA
* * ** *
14454435 TGCTCCACTGCAACTTCAGGGAGACATGGTTCGTGTGTTTTTATCC
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCGTGTACTTTGATCC
* * * **
14454481 TGCTCTACTGCAACTTCAGAGAGATAAGGATCGTG-ACTTTGATTT
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCGTGTACTTTGATCC
14454526 TGCTCCACTGCAACTTCAGGGAGACAA
1 TGCTCCACTGCAACTTCAGGGAGACAA
14454553 AATCTTGCAA
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 29 0.49
46 30 0.51
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (46 bp):
TGCTCCACTGCAACTTCAGGGAGACAAGGATCGTGTACTTTGATCC
Found at i:14454975 original size:132 final size:132
Alignment explanation
Indices: 14454650--14455564 Score: 1323
Period size: 132 Copynumber: 6.9 Consensus size: 132
14454640 CAATCGTCAG
* * * *
14454650 CCTACTCCACTACAACTTTAGGGAGCTAGGGTGGT-AGTCTAAATCTGCTTCACTGCAACATCAG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACT-TAAATCTGCTTCACTGCAACTTCAG
* * * * * *
14454714 GAAACCTAGATTCAG-CGTCTTTGATCTGTTCCACTGCAA-TCTCAGGGAAACAAAATCTATATT
65 GAAGCCAAGATTC-GTCGTCTTTGATCTGCTCCACTGCAACT-TCAGGGAAACAAGATCTAAAAT
*
14454777 TCTCAG
128 T-TCAA
* * * * *
14454783 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAATGGCTTAAATCTGCCTGACTGTAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * ** ** *
14454848 AAGCCTAGATTCGCCGTCTTCAATCTGCTCCACTGCAACTTCAGGGAAAGGAGACCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
*
14454913 AG
131 AA
* *
14454915 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTAACTTAAATCTACTTCACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
*
14454980 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14455045 AA
131 AA
* * *
14455047 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAATGACGTAAATCTGCTTCACTGCAACTTCAAG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
*
14455112 AAGCCAAGATTCGTCATCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14455177 AA
131 AA
* *
14455179 CCTACTCCACTACAACTTTATGGAGCTAGGTTAGTGACTTAAATCTACTTCACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * * * * *
14455244 AAGTCAAGATTCGTCGTCTTCGATCTGTTTCACTGCAACTTTAGGGAAACAGGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14455309 AA
131 AA
* * *
14455311 CCTACTCCACTACAACTTTAGGAAGCTAAGTTAATGACTTAAATCTGCTTCACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * *
14455376 AAGCCAAGATTCATCGTTTTTGATTTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14455441 AA
131 AA
*
14455443 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGA
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * * *
14455508 AAGTCAAGATTCGTCGCCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAGGATCT
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
14455565 GTGGGATTCG
Statistics
Matches: 702, Mismatches: 77, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
132 597 0.85
133 103 0.15
134 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
AA
Found at i:14469417 original size:13 final size:13
Alignment explanation
Indices: 14469399--14469449 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
14469389 ACGCACACTA
14469399 CTACCAGGCAACG
1 CTACCAGGCAACG
* *
14469412 CTACCAGGCGAGG
1 CTACCAGGCAACG
* * *
14469425 CTACTAGGCGAGG
1 CTACCAGGCAACG
14469438 CTACCAGGCAAC
1 CTACCAGGCAAC
14469450 ATTCGTATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.27, C:0.33, G:0.29, T:0.10
Consensus pattern (13 bp):
CTACCAGGCAACG
Found at i:14470512 original size:42 final size:43
Alignment explanation
Indices: 14469517--14471826 Score: 2260
Period size: 43 Copynumber: 54.4 Consensus size: 43
14469507 GTGCCCCTAC
* * **
14469517 TGCCCGAGGCACCCGCAC-ATCCAACGTTCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * ** * * *
14469560 TGTCCTAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGC
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * * * *
14469602 TGCTCGAGGCTCCCACAC-ATCCGAGGCACCAAAG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGG
* * *
14469645 TGCCTGAGGCTCCCGCACGACCAAAGGCCTACGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** * *
14469688 TGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGTCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * *
14469730 TGCCCGAGGCTCTCGCACAATCAA-GGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14469772 TGCCCGAAGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** * *
14469815 TGTCTGAGGCTTTCGCACAACC-AGGGCCCTTGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGG
* * ** * *
14469858 TGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * *
14469900 T-CCTGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14469942 TGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATAG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** * * *
14469985 TGCCCGAGGCTCTTGCACTACTAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14470028 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCTATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14470070 TACCCGAGGC-CCTCGCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * * *
14470113 TGCCCGAGTCTCTCGCACGACTAGGGGCCTAAGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14470156 TGCCCGAGGCTCCCTCACGACCAAGAGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14470199 TGTCTGAGGCTCCCGCACGACCAAGGGCCTAGGTT-CCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14470241 TGGCCGAGGCTCCCGCACGACCAATGGCCTAGG-TGCTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14470283 T-CCCAAGGTTCTCGCACGACCAAGGGCCTAGGTTGCCGATTG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14470325 TGCCCAAGGATCCAGCATGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** * * *
14470368 TGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATAG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
14470410 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
14470452 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14470495 T-ACCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATAG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** * *
14470537 TG-CCTAGGCTCTTGCACGACCAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * * *
14470579 TGCCCGAGGCTCTCACATGACCAAGGGCTTAGGTTGCTGATTG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** * * *
14470622 TGTTCGAGGCTCCCGCATGACCAAGGGCCTA-GCTGCCTATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14470664 TGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** * *
14470707 TGCCTGAGGCTTTCGCACGACCAGGGGCTTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14470750 TGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCGGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** *
14470793 TGTCCGAGGCTCCCTCACGACCATTGGCCTA-GTTGTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** *
14470835 TGTCCGAGGCTCCTTCACGACCAATGGCCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14470877 TGGCTGAGGCTCCCACACGACCAAGGGCCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14470919 T-CCTGAGGCTCTCGCACGACCAAGAGCCTAGGTTACTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14470961 TGCCTGAGGATCTCGTACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14471004 TGCCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14471047 TGCCCGAGGATCCCG-ACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * ** * *
14471089 TGCCCGACGCTCCCACAC-ATTCAAGTACCAAGG-TGCCGATAG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * *
14471131 TGCCCGAGGCTCCCACACGACCAAGGGCCTACG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14471173 TGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14471216 T-ACCGAGGCTCTCGCACGATCAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14471258 TG-CCGAGGCTCCCACATGACCAGGGGCCTAGGTTGTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14471300 TGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14471343 TGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14471386 TGCCCGAGGCTCCTGCACGACCAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** *
14471429 TGCCCGGGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * *
14471471 TGCCGGAGGTTCCCGCACGACCAAGAGACTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * **
14471513 CGCCTGAGGCTCCCGCACGACCAATGGCCTAGGTTTTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14471556 T-CCTGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14471598 TGCCCGAGGCTCCCGTACGA-CTAGGGTCTTAGGCTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGG
*
14471641 TGCCCGAGGCTCCCG-ACGACCAAGGGCCTAGGTTGTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** ** * * *
14471683 TGCTTGAGGCTCCTACACGACCAGGGGCCTAGGTTGCCAATGC
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** ** * *
14471726 CG-CCGAGGCTCTTGCAC-ATCCAAGCACCAAGG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * ** * *
14471767 TCCCCGAGGCTTCCGCAC-ATCCAAGCACCAAGG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* *
14471809 TCCCCGAGGCTCCTGCAC
1 TGCCCGAGGCTCCCGCAC
14471827 ATCCAAGCAC
Statistics
Matches: 1892, Mismatches: 332, Indels: 87
0.82 0.14 0.04
Matches are distributed among these distances:
41 92 0.05
42 867 0.46
43 929 0.49
44 4 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (43 bp):
TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
Found at i:14470565 original size:24 final size:24
Alignment explanation
Indices: 14470500--14470568 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
14470490 GATGGTACCG
*
14470500 AGGCTCTCGCACGACCAGGGGCCT
1 AGGCTCTTGCACGACCAGGGGCCT
* *
14470524 AGG---TTGC-CGA-TA-GTGCCT
1 AGGCTCTTGCACGACCAGGGGCCT
14470542 AGGCTCTTGCACGACCAGGGGCCT
1 AGGCTCTTGCACGACCAGGGGCCT
14470566 AGG
1 AGG
14470569 TTACCGATGG
Statistics
Matches: 34, Mismatches: 5, Indels: 12
0.67 0.10 0.24
Matches are distributed among these distances:
18 8 0.24
19 1 0.03
20 3 0.09
21 7 0.21
22 3 0.09
23 1 0.03
24 11 0.32
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.17
Consensus pattern (24 bp):
AGGCTCTTGCACGACCAGGGGCCT
Found at i:14470647 original size:594 final size:595
Alignment explanation
Indices: 14469638--14471723 Score: 2340
Period size: 594 Copynumber: 3.5 Consensus size: 595
14469628 CACCAAAGTG
* * * * * *
14469638 CCGATGGTGCCTGAGGCTCCCGCACGACCAAAGGCCTACGTTGCCGATGGTGTCCGAGGCTCCTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTA-GGTGCCGATGGTGCCCGAGGTTCCCG
** * * * * *
14469703 CAC-ATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCTCGCACAATCAA-GGCCTAGGTTAC
65 CACGA-CCAAGGGCCTAGGTGCCGATGGTGCCTGAGGCTC-CGCACGACCAAGGGCCTAGGTTAC
* * * * **
14469766 CGATGGTGCCCGAAGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGTCTGAGGCTTTCGC
128 CGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * ** *
14469831 ACAACC-AGGGCCCTTGGTTGCCGATGGTGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TG
193 ACGACCAAGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG-ACGA-CCAAGGGCCTAGGTTG
* * *
14469893 CCAATGGTCCTGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCCCGC
256 CCGATGGTCC-GAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCGC
* * *
14469958 ACGACCAGGGGCCTAGGTTACCGATAGTGCCCGAGGCTCTTGCAC-T-ACTAGGGGCCTAGGTTG
320 ACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTC-T-CACATGACCAAGGGCCTAGGTTG
* *
14470021 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGTACCCGAGGCCCTCGC
383 CCGATTGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGT-CCCGAGGCCCTCGC
* * *
14470086 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGTCTCTCGCACGACTAGGGGCCTAAGTTACC
447 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCCTAGGTTGCC
* * *
14470151 GATGGTGCCCGAGGCTCCCTCACGACCAAGAGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGCA
512 GATGGTGCCCGAGGCTCCCTCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA
14470216 CGACCAAGGGCCTAGGTT-
577 CGACCAAGGGCCTAGGTTA
* * * *
14470234 CCGATGGTGGCCGAGGCTCCCGCACGACCAATGGCCTAGGTGCTGATGGT-CCCAAGGTTCTCGC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTGCCGATGGTGCCCGAGGTTCCCGC
* ** * * * *
14470298 ACGACCAAGGGCCTAGGTTGCCGATTGTGCCCAAGGATCCAGCATGACCAGGGGCCTAGGTTGCC
66 ACGACCAAGGGCCTAGG-TGCCGATGGTGCCTGAGGCTCC-GCACGACCAAGGGCCTAGGTTACC
* ** * * *
14470363 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATAGTGCCCGAGGCTCCCGC
129 GATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
14470426 ACGACCAAGGG-CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
193 ACGACCAAGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG-ACGACCAAGGGCCTAGGTTGC
* * * * **
14470489 CGATGGTACCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATAGTG-CCTAGGCTCTTGCA
257 CGATGGT-CCGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCGCA
* *
14470553 CGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACATGACCAAGGGCTTAGGTTGCTG
321 CGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACATGACCAAGGGCCTAGGTTGCCG
* * * *
14470618 ATTGTGTTCGAGGCTCCCGCATGACCAAGGGCCTAGCTGCCTATGGTGCCCGAGGCTCTCGCACG
386 ATTGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGT-CCCGAGGCCCTCGCACG
* * * *
14470683 ACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTTTCGCACGACCAGGGGCTTAGGTTGCCGAT
450 ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCCTAGGTTGCCGAT
* * *
14470748 GGTGCCCGAGGCTCCCGT-ACGACTAGGGGCCTAGGTTGCGGATGGTGTCCGAGGCTCCCTCACG
515 GGTGCCCGAGGCTCCC-TCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACG
** *
14470812 ACCATTGGCCTA-GTTG
579 ACCAAGGGCCTAGGTTA
* * ** * * * *
14470828 TCGATGGTGTCCGAGGCTCCTTCACGACCAATGGCCTAGGTGCCGATGGTGGCTGAGGCTCCCAC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTGCCGATGGTGCCCGAGGTTCCCGC
* *
14470893 ACGACCAAGGGCCTAGGTGCCGATGGT-CCTGAGGCTCTCGCACGACCAAGAGCCTAGGTTACTG
66 ACGACCAAGGGCCTAGGTGCCGATGGTGCCTGAGGCTC-CGCACGACCAAGGGCCTAGGTTACCG
* * * * *
14470957 ATGGTGCCTGAGGATCTCGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGCAC
130 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
14471022 GACC-AGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGACGACCAGGGGCCTAGGTTGCCGA
195 GACCAAGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGACGACCAAGGGCCTAGGTTGCCGA
* * * ** * * *
14471086 TGGTGCCCGACGCTCCCACAC-ATTCAAGTACCAAGG-TGCCGATAGTGCCCGAGGCTCCCACAC
260 TGGT--CCGAGGCTCTCACACGA-CCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCGCAC
* * * * * * * * *
14471149 GACCAAGGGCCTACG-TGCCAATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGA
322 GACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACATGACCAAGGGCCTAGGTTGCCGA
* * * * * * * *
14471213 -TG-GTACCGAGGCTCTCGCACGATCAGGGGCCTAGGTTACCGATGGTGCCGAGGCTCC-CACAT
387 TTGTGT-CCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCTATGGTCCCGAGGC-CCTCGCAC
* * * *
14471275 GACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCCGA
449 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCCTAGGTTGCCGA
* * * * *
14471340 TGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCTGCACG
514 TGGTGCCCGAGGCTCCCTCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACG
*
14471405 ACCAGGGGCCTAGGTTA
579 ACCAAGGGCCTAGGTTA
* * * *
14471422 CCGATGGTGCCCGGGGCTCCCGCAC-ATCCAA-GCACCAAGGTGCCGATGGTGCCGGAGGTTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAATG-GCCTAGGTGCCGATGGTGCCCGAGGTTCCC
* * * * **
14471485 GCACGACCAAGAGACTAGGTGCCGATGGCGCCTGAGGCTCCCGCACGACCAATGGCCTAGGTTTT
64 GCACGACCAAGGGCCTAGGTGCCGATGGTGCCTGAGGCT-CCGCACGACCAAGGGCCTAGGTTAC
* * *
14471550 CGATGGT-CCTGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGT
128 CGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * *
14471614 ACGA-CTAGGGTCTTAGGCTGCCGATGGTGCCCGAGGCTCCCGACGACCAAGGGCCTAGGTTGTC
193 ACGACCAAGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGACGACCAAGGGCCTAGGTTGCC
* *
14471678 GATGGTGCTTGAGGCTC-CTACACGACCAGGGGCCTAGGTTGCCAAT
258 GATGGT-C-CGAGGCTCTC-ACACGACCAAGGGCCTAGGTTGCCAAT
14471724 GCCGCCGAGG
Statistics
Matches: 1254, Mismatches: 200, Indels: 73
0.82 0.13 0.05
Matches are distributed among these distances:
592 5 0.00
593 228 0.18
594 691 0.55
595 246 0.20
596 84 0.07
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (595 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTGCCGATGGTGCCCGAGGTTCCCGC
ACGACCAAGGGCCTAGGTGCCGATGGTGCCTGAGGCTCCGCACGACCAAGGGCCTAGGTTACCGA
TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
ACCAAGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGACGACCAAGGGCCTAGGTTGCCGAT
GGTCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCGCACGACC
AGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACATGACCAAGGGCCTAGGTTGCCGATTGT
GTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGTCCCGAGGCCCTCGCACGACCAAG
GGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCC
CGAGGCTCCCTCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTA
Found at i:14471827 original size:42 final size:42
Alignment explanation
Indices: 14471728--14471843 Score: 207
Period size: 42 Copynumber: 2.8 Consensus size: 42
14471718 GCCAATGCCG
*
14471728 CCGAGGCTCTTGCACATCCAAGCACCAAGGTGCCAATGGTCC
1 CCGAGGCTCCTGCACATCCAAGCACCAAGGTGCCAATGGTCC
14471770 CCGAGGCTTCC-GCACATCCAAGCACCAAGGTGCCAATGGTCC
1 CCGAGGC-TCCTGCACATCCAAGCACCAAGGTGCCAATGGTCC
14471812 CCGAGGCTCCTGCACATCCAAGCACCAAGGTG
1 CCGAGGCTCCTGCACATCCAAGCACCAAGGTG
14471844 TCGATGTTGC
Statistics
Matches: 71, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
41 3 0.04
42 66 0.93
43 2 0.03
ACGTcount: A:0.24, C:0.37, G:0.24, T:0.15
Consensus pattern (42 bp):
CCGAGGCTCCTGCACATCCAAGCACCAAGGTGCCAATGGTCC
Found at i:14471925 original size:43 final size:43
Alignment explanation
Indices: 14471873--14472048 Score: 137
Period size: 43 Copynumber: 4.1 Consensus size: 43
14471863 TGGCCTAGTT
*
14471873 TGCCGGTGGTGTCCGAATCT-TCCGCACAT-TCGAGGCACCAAGC
1 TGCCGGTGGTGTCCGAAGCTCT-CGCACATCT-GAGGCACCAAGC
*
14471916 TGCCGGTGGTGTCCGAAGCTCTCGCACATCTGAGGCACCAAGT
1 TGCCGGTGGTGTCCGAAGCTCTCGCACATCTGAGGCACCAAGC
* * ** * * * *
14471959 TACCGATACTG-CTCGAGGCTCCCGCACATCCGAGGCACCAAGT
1 TGCCGGTGGTGTC-CGAAGCTCTCGCACATCTGAGGCACCAAGC
* ** * * *
14472002 TACCGGTACTG-CTCGAGGCTCCCGCACATCTGA-GCACCAAGG
1 TGCCGGTGGTGTC-CGAAGCTCTCGCACATCTGAGGCACCAAGC
14472044 TGCCG
1 TGCCG
14472049 ATGCTGCTCG
Statistics
Matches: 117, Mismatches: 13, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
42 13 0.11
43 102 0.87
44 2 0.02
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (43 bp):
TGCCGGTGGTGTCCGAAGCTCTCGCACATCTGAGGCACCAAGC
Found at i:14472070 original size:42 final size:43
Alignment explanation
Indices: 14471933--14472063 Score: 192
Period size: 43 Copynumber: 3.1 Consensus size: 43
14471923 GGTGTCCGAA
*
14471933 GCTCTCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
1 GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
* *
14471976 GCTCCCGCACATCCGAGGCACCAAGTTACCGGTACTGCTCGAG
1 GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
* * * *
14472019 GCTCCCGCACATCTGA-GCACCAAGGTGCCGATGCTGCTCGTG
1 GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
14472061 GCT
1 GCT
14472064 TTCGCACCAT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 24 0.30
43 55 0.70
ACGTcount: A:0.20, C:0.35, G:0.26, T:0.19
Consensus pattern (43 bp):
GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
Found at i:14472091 original size:85 final size:86
Alignment explanation
Indices: 14471894--14472063 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 86
14471884 TCCGAATCTT
* * * ** * *
14471894 CCGCACATTCGAGGCACCAAGCTGCCGGTGGTG-TCCGAAGCTCTCGCACATCTGAGGCACCAAG
1 CCGCACATCCGAGGCACCAAGTTACCGGTACTGCT-CGAGGCTCCCGCACATCTGAGGCACCAAG
*
14471958 TTACCGATACTGCTCGAGGCTC
65 GTACCGATACTGCTCGAGGCTC
14471980 CCGCACATCCGAGGCACCAAGTTACCGGTACTGCTCGAGGCTCCCGCACATCTGA-GCACCAAGG
1 CCGCACATCCGAGGCACCAAGTTACCGGTACTGCTCGAGGCTCCCGCACATCTGAGGCACCAAGG
* * *
14472044 TGCCGATGCTGCTCGTGGCT
66 TACCGATACTGCTCGAGGCT
14472064 TTCGCACCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 25 0.35
86 46 0.64
87 1 0.01
ACGTcount: A:0.20, C:0.35, G:0.27, T:0.18
Consensus pattern (86 bp):
CCGCACATCCGAGGCACCAAGTTACCGGTACTGCTCGAGGCTCCCGCACATCTGAGGCACCAAGG
TACCGATACTGCTCGAGGCTC
Found at i:14472349 original size:23 final size:23
Alignment explanation
Indices: 14472313--14472378 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
14472303 TATTTCGGGA
*
14472313 TGGCTCGCCGGAGCACCGCCAGG
1 TGGCTCGCCAGAGCACCGCCAGG
* *
14472336 TGGCTCACCAGAGCACCGCCTGG
1 TGGCTCGCCAGAGCACCGCCAGG
14472359 TGGCTCGCCAGAGCACCGCC
1 TGGCTCGCCAGAGCACCGCC
14472379 GGAATGGATC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.15, C:0.41, G:0.33, T:0.11
Consensus pattern (23 bp):
TGGCTCGCCAGAGCACCGCCAGG
Found at i:14472883 original size:58 final size:59
Alignment explanation
Indices: 14472809--14472929 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 59
14472799 GGGAGGGACA
* * * * *
14472809 GGGATGATTTATTCATTGTTGGGTACCGGACATACAACAGTATCTGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATACAACAGTATCCGAATCCTACCTTTT
** * *
14472867 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATACAACAGTATCCGAATCCTACCTTTT
14472926 GGGA
1 GGGA
14472930 TTGGGGAGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
58 46 0.87
59 7 0.13
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATACAACAGTATCCGAATCCTACCTTTT
Found at i:14475919 original size:46 final size:46
Alignment explanation
Indices: 14475867--14476186 Score: 489
Period size: 46 Copynumber: 7.0 Consensus size: 46
14475857 AGTGTGCTCT
*
14475867 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14475913 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
14475959 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14476005 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14476051 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ***
14476097 GTGTTATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14476143 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14476187 TCATGTCAAA
Statistics
Matches: 253, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 252 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14477142 original size:5 final size:5
Alignment explanation
Indices: 14477132--14477157 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14477122 TACAAGAAGT
14477132 ATGGC ATGGC ATGGC ATGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC A
14477158 CGACACTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.38, T:0.19
Consensus pattern (5 bp):
ATGGC
Found at i:14477263 original size:187 final size:187
Alignment explanation
Indices: 14476941--14477278 Score: 559
Period size: 187 Copynumber: 1.8 Consensus size: 187
14476931 AAGCCGAATA
* *
14476941 AAGTATGGCATGGCATGGCATGGAACGGTACGGCACAGCAAAAAATTGAACAACTGCCCGGACCG
1 AAGTATGGCATGGCATGGCATGGAACGGCACGACACAGCAAAAAATTGAACAACTGCCCGGACCG
*
14477006 CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGGC
66 CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGAC
14477071 GGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTGTTGGCCCGAAACAAATACAAG
131 GGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTGTTGGCCCGAAACAAATACAAG
* * * * * * * *
14477128 AAGTATGGCATGGCATGGCATGGCATGGCACGACACTGTAGAAACTTGAACAAGTGCCCGGACTG
1 AAGTATGGCATGGCATGGCATGGAACGGCACGACACAGCAAAAAATTGAACAACTGCCCGGACCG
* *
14477193 CCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCCCTGTTGTGCCATGTTTCCCGAGGGGAC
66 CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGAC
14477258 GGCACGGCCAAGTGTTTAACT
131 GGCACGGCCAAGTGTTTAACT
14477279 AACTCCTTAC
Statistics
Matches: 138, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
187 138 1.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (187 bp):
AAGTATGGCATGGCATGGCATGGAACGGCACGACACAGCAAAAAATTGAACAACTGCCCGGACCG
CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGAC
GGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTGTTGGCCCGAAACAAATACAAG
Found at i:14479969 original size:35 final size:35
Alignment explanation
Indices: 14479930--14479996 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
14479920 CTCAGGAGCT
*
14479930 TGGCAAATATGGAAAGTAATCTTCAAAGATATGCG
1 TGGCAAATATGGAAAGGAATCTTCAAAGATATGCG
* *
14479965 TGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 TGGCAAATATGGAAAGGAATCTTCAAAGATAT
14479997 ATGATCCTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (35 bp):
TGGCAAATATGGAAAGGAATCTTCAAAGATATGCG
Found at i:14485315 original size:13 final size:13
Alignment explanation
Indices: 14485297--14485325 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14485287 GGTTGTTTAT
14485297 TAAACTAATTAAC
1 TAAACTAATTAAC
14485310 TAAACTAATTAAC
1 TAAACTAATTAAC
14485323 TAA
1 TAA
14485326 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:14493991 original size:22 final size:21
Alignment explanation
Indices: 14493944--14493992 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
14493934 CCTAAATTAG
* *
14493944 AATAATTTAAATAAATTTACA
1 AATAATTAAAATAAATTTAAA
*
14493965 TATAATTAAAATAAAATTTAAA
1 AATAATTAAAAT-AAATTTAAA
14493987 AATAAT
1 AATAAT
14493993 CTACACATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
AATAATTAAAATAAATTTAAA
Found at i:14494611 original size:21 final size:22
Alignment explanation
Indices: 14494585--14494634 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
14494575 CCTCAATAAT
*
14494585 ATATATTATACCAT-CTTGTTA
1 ATATATTATACCATACTTATTA
*
14494606 ATATATTATCCCATACTTATTA
1 ATATATTATACCATACTTATTA
14494628 AT-TATTA
1 ATATATTA
14494635 CAATATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATATTATACCATACTTATTA
Found at i:14495287 original size:60 final size:60
Alignment explanation
Indices: 14495217--14495329 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 60
14495207 CTAGTTAATC
*
14495217 AATTACTAGTAAATTTATTCTCTAATCATTTAACTATAAAAAATTATAAAATAAATACTT
1 AATTACTAGTAAATTTATTCTATAATCATTTAACTATAAAAAATTATAAAATAAATACTT
* * * * *
14495277 AATTATTAGTAAATTTCTTTTATTATTATTTAACTATAAAAAATTATAAAATA
1 AATTACTAGTAAATTTATTCTATAATCATTTAACTATAAAAAATTATAAAATA
14495330 GTCATCCAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (60 bp):
AATTACTAGTAAATTTATTCTATAATCATTTAACTATAAAAAATTATAAAATAAATACTT
Found at i:14506185 original size:13 final size:13
Alignment explanation
Indices: 14506167--14506191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14506157 CATCAACACT
14506167 GTGATTCCAGGCC
1 GTGATTCCAGGCC
14506180 GTGATTCCAGGC
1 GTGATTCCAGGC
14506192 TTCGAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (13 bp):
GTGATTCCAGGCC
Found at i:14507579 original size:36 final size:35
Alignment explanation
Indices: 14507492--14507585 Score: 84
Period size: 36 Copynumber: 2.5 Consensus size: 35
14507482 TTTTTTATTC
14507492 TATATTATTTATTATTTTTATAGGTTATATATATCA
1 TATATTATTTA-TATTTTTATAGGTTATATATATCA
* *
14507528 TATATTATCTATTATATTATT-TACGTT-TATATTATTCA
1 TATATTA--T-TTATATTTTTATAGGTTATATA-TA-TCA
*
14507566 TTATATTATTTATAATTTTA
1 -TATATTATTTATATTTTTA
14507586 AAATTTGTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
36 19 0.40
37 8 0.17
38 10 0.21
39 10 0.21
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (35 bp):
TATATTATTTATATTTTTATAGGTTATATATATCA
Found at i:14510291 original size:54 final size:54
Alignment explanation
Indices: 14510209--14510313 Score: 210
Period size: 54 Copynumber: 1.9 Consensus size: 54
14510199 CTTCTTCGAT
14510209 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTTGAG
1 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTTGAG
14510263 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTT
1 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTT
14510314 CTAAAAGAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (54 bp):
GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTTGAG
Found at i:14511527 original size:14 final size:14
Alignment explanation
Indices: 14511508--14511537 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14511498 AAGATATTCT
14511508 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
14511522 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
14511536 TT
1 TT
14511538 GAACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:14519697 original size:44 final size:44
Alignment explanation
Indices: 14519637--14519961 Score: 227
Period size: 44 Copynumber: 7.4 Consensus size: 44
14519627 CAAAGAAACA
*
14519637 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * ***
14519681 AGATCTGACATTCCTGTGCTTACAGTGAAGCAGATC-AAGGATTTT
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAA-GATAGC
*
14519726 AG--CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
14519769 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * **
14519813 AGATTTGACA-CTCATGTGCTTACAGCGAAGCAGATCGAGGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
14519858 AG--CATGGCGTCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * * * *
14519901 AGATTTGGCATCTCTGTATTGT-TAGAGAGCAGATCGAAGATACC
1 AGATCTGGCATCCCTGTGTT-TATAGGGAACAGATCGAAGATAGC
* *
14519945 AGATTTGGCATCTCTGT
1 AGATCTGGCATCCCTGT
14519962 ATTAGTGGAG
Statistics
Matches: 216, Mismatches: 48, Indels: 34
0.72 0.16 0.11
Matches are distributed among these distances:
42 2 0.01
43 21 0.10
44 164 0.76
45 29 0.13
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:14519874 original size:132 final size:132
Alignment explanation
Indices: 14519637--14519951 Score: 497
Period size: 132 Copynumber: 2.4 Consensus size: 132
14519627 CAAAGAAACA
* * * *
14519637 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATTTGACACTCATGTGCTT
* *
14519702 ACAGTGAAGCAGATCAAGGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCAAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14519767 GC
131 GC
14519769 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATTTGACACTCATGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATTTGACACTCATGTGCTT
* *
14519834 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCGTCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCAAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14519899 GC
131 GC
* * * * *
14519901 AGATTTGGCATCTCTGTATTGT-TAGAGAGCAGATCGAAGATACCAGATTTG
1 AGATTTGGCATCCCTGTGTT-TATAGGGAACAGATCGAAGATAACAGATTTG
14519952 GCATCTCTGT
Statistics
Matches: 169, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
132 168 0.99
133 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATTTGACACTCATGTGCTT
ACAGCGAAGCAGATCAAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:14519962 original size:44 final size:44
Alignment explanation
Indices: 14519892--14519984 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
14519882 GGAACAAGTT
*
14519892 GAAGATAGCAGATTTGGCATCTCTGTATT-GTTAGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTAG-TAGAGAGCAGATC
*
14519936 GAAGATACCAGATTTGGCATCTCTGTATTAGTGGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTAGTAGAGAGCAGATC
14519980 GAAGA
1 GAAGA
14519985 CATAGTTGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 45 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTAGTAGAGAGCAGATC
Found at i:14532131 original size:40 final size:39
Alignment explanation
Indices: 14532095--14532270 Score: 183
Period size: 40 Copynumber: 4.4 Consensus size: 39
14532085 ATATCCGGAC
* *
14532095 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* *
14532135 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* **
14532175 TAAGTCTCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTC-CGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* * * * *
14532215 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
*
14532254 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
14532271 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 36 0.30
40 85 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
Found at i:14532186 original size:80 final size:79
Alignment explanation
Indices: 14532048--14532272 Score: 227
Period size: 80 Copynumber: 2.8 Consensus size: 79
14532038 TTGAATGCTG
* * * ** * * * * *
14532048 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
14532112 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * * * *
14532128 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCTCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
14532193 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
14532208 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
14532273 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:14532291 original size:79 final size:80
Alignment explanation
Indices: 14532123--14532305 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
14532113 GTGCGAGATA
* * * *
14532123 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCTCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
14532188 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
14532203 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
14532267 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
14532282 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
14532306 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:14536644 original size:16 final size:15
Alignment explanation
Indices: 14536625--14536660 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14536615 TTTCATTAAG
14536625 TTTTTAAGACTCATT
1 TTTTTAAGACTCATT
*
14536640 TTTTTAAGATTCATT
1 TTTTTAAGACTCATT
14536655 TGTTTT
1 T-TTTT
14536661 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.61
Consensus pattern (15 bp):
TTTTTAAGACTCATT
Found at i:14537409 original size:13 final size:13
Alignment explanation
Indices: 14537391--14537419 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14537381 GGTTGTTTAT
14537391 TAAACTAATTAAC
1 TAAACTAATTAAC
14537404 TAAACTAATTAAC
1 TAAACTAATTAAC
14537417 TAA
1 TAA
14537420 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:14538891 original size:43 final size:44
Alignment explanation
Indices: 14538842--14538999 Score: 189
Period size: 43 Copynumber: 3.7 Consensus size: 44
14538832 GATTGCTGAG
* *
14538842 ATGTGATTACATGTAAGGCCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
14538886 -TGTGATTACGTGTAAGA-CATGTCTAGGACATTGACATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
14538927 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
14538970 ATGTGATAACACGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
14539000 TATGGAATTG
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 35 0.36
43 60 0.62
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:14543473 original size:14 final size:14
Alignment explanation
Indices: 14543454--14543485 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14543444 CATCCATGCC
14543454 AAACTATCAAATGT
1 AAACTATCAAATGT
14543468 AAACTATCAAATGT
1 AAACTATCAAATGT
14543482 AAAC
1 AAAC
14543486 ATACTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.16, G:0.06, T:0.25
Consensus pattern (14 bp):
AAACTATCAAATGT
Found at i:14551687 original size:19 final size:19
Alignment explanation
Indices: 14551644--14551689 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
14551634 AATAAGACCC
14551644 CATT-TCTCACTTTTCTAAT
1 CATTCTCTCACTTTTC-AAT
14551663 CA-TCTCTCACTTATTC-AT
1 CATTCTCTCACTT-TTCAAT
14551681 CATTCTCTC
1 CATTCTCTC
14551690 CTCTCTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 5 0.21
19 16 0.67
20 3 0.12
ACGTcount: A:0.20, C:0.33, G:0.00, T:0.48
Consensus pattern (19 bp):
CATTCTCTCACTTTTCAAT
Found at i:14565707 original size:64 final size:64
Alignment explanation
Indices: 14565509--14565794 Score: 238
Period size: 64 Copynumber: 4.4 Consensus size: 64
14565499 CATAATTTTG
* * * * ** *
14565509 GCTCTCTTGTAC-ACATGATGAACACTTAGTACCACCCATGTGACCTAGCCACT-T-TATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTA-TATATATCTCGT
14565571 A
64 A
* * * * * * * * * *
14565572 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATTTATCTCA
1 GCTCTCTTGTCTACATGGTG---TACACATAGTATCACCCATGCAACCTAGCTATATATATCTCG
14565637 TA
63 TA
* *
14565639 GCTCTCTTGTCTACATGGTGTACGCATAGTATCACCCATGCAACCTAGCTATATATATCCCGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTATATATATCTCGTA
* ** *
14565703 GCTCTCTTATCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACCTCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTA--T-AT-ATATCTC
14565768 GTA
62 GTA
*
14565771 GCTCTCTTGTAC-ACATGGTATACA
1 GCTCTCTTGT-CTACATGGTGTACA
14565795 TCCCGTATTA
Statistics
Matches: 179, Mismatches: 33, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
63 17 0.09
64 80 0.45
66 24 0.13
67 29 0.16
68 28 0.16
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.32
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTATATATATCTCGTA
Found at i:14566321 original size:30 final size:30
Alignment explanation
Indices: 14566287--14566347 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14566277 TCCTTAACTC
*
14566287 AAACTTTTACAAAATTACAATTTTGCTCCT
1 AAACTTTTACAAAATTACAATTTTGCCCCT
* * * *
14566317 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACAATTTTGCCCCT
14566347 A
1 A
14566348 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAAATTACAATTTTGCCCCT
Found at i:14572064 original size:3 final size:3
Alignment explanation
Indices: 14572058--14572107 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
14572048 CACCTCCTCC
14572058 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14572106 TC
1 TC
14572108 AGTTTACTTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:14574139 original size:13 final size:13
Alignment explanation
Indices: 14574121--14574145 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14574111 AGTAATCACG
14574121 CACGGGCGTGTCA
1 CACGGGCGTGTCA
14574134 CACGGGCGTGTC
1 CACGGGCGTGTC
14574146 CTTGCTGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:14580364 original size:27 final size:26
Alignment explanation
Indices: 14580313--14580364 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
14580303 ATTTATCTTA
*
14580313 TTTAAGTACTTTTTATTTTATTTTTC
1 TTTAAGTACTTTTTATTTTAGTTTTC
14580339 TTTAA-TACTATTTTAATTTTAGTTTT
1 TTTAAGTACT-TTTT-ATTTTAGTTTT
14580365 TATATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 9 0.39
27 10 0.43
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTAAGTACTTTTTATTTTAGTTTTC
Found at i:14585640 original size:21 final size:21
Alignment explanation
Indices: 14585614--14585653 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14585604 AATAGATAGT
*
14585614 GAAACAATCGATTGAAAAGGG
1 GAAACAATCAATTGAAAAGGG
14585635 GAAACAATCAATTGAAAAG
1 GAAACAATCAATTGAAAAG
14585654 ATGAGAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.10, G:0.23, T:0.15
Consensus pattern (21 bp):
GAAACAATCAATTGAAAAGGG
Found at i:14590983 original size:25 final size:25
Alignment explanation
Indices: 14590955--14591022 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
14590945 TATACATTAC
14590955 AATTATATTTAACTACACCTAATGA
1 AATTATATTTAACTACACCTAATGA
*
14590980 AATTATATTTAACTACACCTTATGA
1 AATTATATTTAACTACACCTAATGA
14591005 AATTATATTTAACTACAC
1 AATTATATTTAACTACAC
14591023 ACTTTAGTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (25 bp):
AATTATATTTAACTACACCTAATGA
Found at i:14591395 original size:35 final size:34
Alignment explanation
Indices: 14591331--14591397 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
14591321 ATACATATGA
**
14591331 TTAAATTAATTAATCTTAATTACTTTAACAAAAG
1 TTAAATTAATTAATCTTAATTACAATAACAAAAG
*
14591365 TTAAATTAATTAATTCTTAGTTTA-AATAACAAA
1 TTAAATTAATTAA-TCTTA-ATTACAATAACAAA
14591398 TTAGTGGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 13 0.46
35 12 0.43
36 3 0.11
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (34 bp):
TTAAATTAATTAATCTTAATTACAATAACAAAAG
Found at i:14616495 original size:48 final size:48
Alignment explanation
Indices: 14616434--14616708 Score: 266
Period size: 48 Copynumber: 5.7 Consensus size: 48
14616424 GATATGTGTA
* *
14616434 CCAGTGTAAGACCATGTCTGGGACATGGTATCGGCCAGGATATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
* * * ** * *
14616482 CCAGTGTAAGACCATGTTTGGAATATGGCATCGGCGTTGATATGCGCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
* * * *
14616530 CTAGTGTAAGACCAGGTCTAGGACATGGCATCGGCCA-CATCATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGAT-ATGAGAG
* * * ** * * *
14616578 CTAGTGTAAGACCATGTTTGGTACATGGCATCAACAATGAGACGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
* * * *
14616626 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTG-CATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-ATGATATGAGAG
* * *
14616674 CCAATGTAAGACCATGTTTGGAACATGGCATCGGC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
14616709 AATTCACCCT
Statistics
Matches: 181, Mismatches: 43, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
47 2 0.01
48 176 0.97
49 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
Found at i:14616587 original size:96 final size:96
Alignment explanation
Indices: 14616436--14616711 Score: 358
Period size: 96 Copynumber: 2.9 Consensus size: 96
14616426 TATGTGTACC
* *
14616436 AGTGTAAGACCATGTCTGGGACATGGTATCGGCCAGGAT-ATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATCATGAGAGCCAGTGTAAGACCATGTT
* ** * * * *
14616500 TGGAATATGGCATCGGCGTTGATATGCGCGCT
65 TGGAACATGGCATCGGCAATGAGACGAGAGCT
* * *
14616532 AGTGTAAGACCAGGTCTAGGACATGGCATCGGCCACATCATGAGAGCTAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTTT
* **
14616597 GGTACATGGCATCAACAATGAGACGAGAGCT
66 GGAACATGGCATCGGCAATGAGACGAGAGCT
* * *
14616628 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-TGCATGTGAGCCAATGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT-CATGAGAGCCAGTGTAAGACCATGTT
14616692 TGGAACATGGCATCGGCAAT
65 TGGAACATGGCATCGGCAAT
14616712 TCACCCTCTT
Statistics
Matches: 154, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
95 3 0.02
96 151 0.98
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATCGGCAATGAGACGAGAGCT
Found at i:14616700 original size:144 final size:144
Alignment explanation
Indices: 14616436--14616708 Score: 327
Period size: 144 Copynumber: 1.9 Consensus size: 144
14616426 TATGTGTACC
* ** * * * *
14616436 AGTGTAAGACCATGTCTGGGACATGGTATCGGCCAGGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACAAGGAGACGAGAGCCAGTGTAAGACCATGTCT
* * * *
14616501 GGAATATGGCATCGGCGTTGATATGCGCGCTAGTGTAAGACCAGGTCTAGGACATGGCATCGGCC
66 GGAACATGGCATCGGCCTTGATATGAGCGCTAATGTAAGACCAGGTCTAGGACATGGCATCGGCC
14616566 ACATCATGAGAGCT
131 ACATCATGAGAGCT
* * * *
14616580 AGTGTAAGACCATGTTTGGTACATGGCATCAACAATGAGACGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACAAGGAGACGAGAGCCAGTGTAAGACCATGTCT
* * * *
14616645 GGGACATGGCATCGGCCTCTGCATGTGAGC-C-AATGTAAGACCATGT-TTGGAACATGGCATCG
66 GGAACATGGCATCGGCCT-TG-ATATGAGCGCTAATGTAAGACCAGGTCTAGG-ACATGGCATCG
14616707 GC
128 GC
14616709 AATTCACCCT
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
143 3 0.03
144 95 0.89
145 3 0.03
146 6 0.06
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAACAAGGAGACGAGAGCCAGTGTAAGACCATGTCT
GGAACATGGCATCGGCCTTGATATGAGCGCTAATGTAAGACCAGGTCTAGGACATGGCATCGGCC
ACATCATGAGAGCT
Found at i:14616987 original size:18 final size:20
Alignment explanation
Indices: 14616952--14616988 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
14616942 GTTTATACTT
*
14616952 GTGATATATATAAGCATGTA
1 GTGATATATATAACCATGTA
14616972 GTGATAT-T-TAACCATGT
1 GTGATATATATAACCATGT
14616989 TCACTCAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 1 0.06
20 7 0.44
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (20 bp):
GTGATATATATAACCATGTA
Found at i:14617383 original size:30 final size:32
Alignment explanation
Indices: 14617347--14617407 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
14617337 CAAATTTCTC
*
14617347 ATGCTTGTGGTTGG-TTTGGTT-ATA-TGTGTT
1 ATGCTTG-GATTGGTTTTGGTTGATATTGTGTT
14617377 ATGCTTGGATTGGTTTTGGTTGATATTGTGT
1 ATGCTTGGATTGGTTTTGGTTGATATTGTGT
14617408 AGGTTGGTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 5 0.19
30 14 0.52
31 3 0.11
32 5 0.19
ACGTcount: A:0.11, C:0.03, G:0.33, T:0.52
Consensus pattern (32 bp):
ATGCTTGGATTGGTTTTGGTTGATATTGTGTT
Found at i:14618096 original size:22 final size:22
Alignment explanation
Indices: 14618071--14618114 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
14618061 AGTACATATC
14618071 ATACTTATCAATACAACCTATT
1 ATACTTATCAATACAACCTATT
14618093 ATACTTATCAATACAACCTATT
1 ATACTTATCAATACAACCTATT
14618115 TCAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (22 bp):
ATACTTATCAATACAACCTATT
Found at i:14618673 original size:34 final size:34
Alignment explanation
Indices: 14618634--14618701 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
14618624 AATTCATGCA
14618634 CATAGATTATCAAGATTTTCATGAGTTTATTCAT
1 CATAGATTATCAAGATTTTCATGAGTTTATTCAT
14618668 CATAGATTATCAAGATTTTCATGAGTTTATTCAT
1 CATAGATTATCAAGATTTTCATGAGTTTATTCAT
14618702 TCAAAACACG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (34 bp):
CATAGATTATCAAGATTTTCATGAGTTTATTCAT
Found at i:14619199 original size:43 final size:43
Alignment explanation
Indices: 14619132--14619300 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 43
14619122 AAAGCTCGTA
* *
14619132 CAATGCC-ATATCCCAAATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATATCCCAAACATGGTCTTACATGTAATCACATAT
* * * * * *
14619174 CTATGCCACTATCCCAGACAGGGTCTTACATGAAATCGA-ATAA
1 CAATGCCAATATCCCAAACATGGTCTTACATGTAATC-ACATAT
* * * *
14619217 CGATGCTAATATCCCAGACATGGTCTTACACGTAATCACA-AT
1 CAATGCCAATATCCCAAACATGGTCTTACATGTAATCACATAT
* *
14619259 AAAATGCCAATTTCCCAAACATGGTCTTACATGTAATCACAT
1 -CAATGCCAATATCCCAAACATGGTCTTACATGTAATCACAT
14619301 CTCGGTAATC
Statistics
Matches: 101, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 8 0.08
43 92 0.91
44 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (43 bp):
CAATGCCAATATCCCAAACATGGTCTTACATGTAATCACATAT
Found at i:14619285 original size:86 final size:86
Alignment explanation
Indices: 14619139--14619296 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 86
14619129 GTACAATGCC
* * * ** * *
14619139 ATATCCCAAATATGGTCTTACATGTTATCACATATCTATGCCACTATCCCAGACAGGGTCTTACA
1 ATATCCCAAACATGGTCTTACACGTAATCACATATAAATGCCAATATCCCAAACAGGGTCTTACA
14619204 TGAAATCGAATAACGATGCTA
66 TGAAATCGAATAACGATGCTA
* * *
14619225 ATATCCCAGACATGGTCTTACACGTAATCACA-ATAAAATGCCAATTTCCCAAACATGGTCTTAC
1 ATATCCCAAACATGGTCTTACACGTAATCACATAT-AAATGCCAATATCCCAAACAGGGTCTTAC
*
14619289 ATGTAATC
65 ATGAAATC
14619297 ACATCTCGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 2 0.03
86 58 0.97
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (86 bp):
ATATCCCAAACATGGTCTTACACGTAATCACATATAAATGCCAATATCCCAAACAGGGTCTTACA
TGAAATCGAATAACGATGCTA
Found at i:14622227 original size:40 final size:40
Alignment explanation
Indices: 14622172--14622316 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
14622162 TGTATAATTA
* * *
14622172 CACATACATGTCCCTATTTGTACTTCGGTACCCCTAATTG
1 CACATACATGCCCCTATTTGTACTTCGGTACCCATGATTG
*** * *
14622212 CACATATGGGCCCCTATTTGTACTTCAGTACCCTTGATTG
1 CACATACATGCCCCTATTTGTACTTCGGTACCCATGATTG
*
14622252 CACATACATGCCCCTGTTTGTACTTCGGTACCCATGATTG
1 CACATACATGCCCCTATTTGTACTTCGGTACCCATGATTG
*
14622292 CACATACATGCCCCTGTTTGTACTT
1 CACATACATGCCCCTATTTGTACTT
14622317 TAGCACCCTA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (40 bp):
CACATACATGCCCCTATTTGTACTTCGGTACCCATGATTG
Found at i:14624453 original size:43 final size:41
Alignment explanation
Indices: 14624361--14624524 Score: 150
Period size: 43 Copynumber: 3.9 Consensus size: 41
14624351 GCGCTGCTAT
* * *
14624361 AGAACATGACCTTTAGCAGCACTTTTCCCACAAA-CATTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACCA-T--TAA
14624404 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAATGCCATTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAA--CCATTAA
* * * * * *
14624447 AAAACATGACCTTTCGTGGTGCTTCCCCCACAAACACCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCCAC-AA-ACCATTAA
* * *
14624490 AGAACATTACCTTTAGCGTCGCTTTTCCCACAAAC
1 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAAC
14624525 GCTGCTAAGG
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 89 0.90
44 2 0.02
45 2 0.02
46 2 0.02
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (41 bp):
AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACCATTAA
Found at i:14624453 original size:86 final size:86
Alignment explanation
Indices: 14624363--14624523 Score: 205
Period size: 86 Copynumber: 1.9 Consensus size: 86
14624353 GCTGCTATAG
** ***
14624363 AACATGACCTTTAGCAGCACTTTTCCCACAAACATTGCTAAAGAACATGACCTTTAGCGGCGCTT
1 AACATGACCTTTAGCAGCACTTCCCCCACAAACACCACTAAAGAACATGACCTTTAGCGGCGCTT
14624428 TCCCCACAAATGCCATTAAAA
66 TCCCCACAAATGCCATTAAAA
* ** ** * *
14624449 AACATGACCTTTCGTGGTGCTTCCCCCACAAACACCACTAAAGAACATTACCTTTAGCGTCGCTT
1 AACATGACCTTTAGCAGCACTTCCCCCACAAACACCACTAAAGAACATGACCTTTAGCGGCGCTT
*
14624514 TTCCCACAAA
66 TCCCCACAAA
14624524 CGCTGCTAAG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
86 62 1.00
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.25
Consensus pattern (86 bp):
AACATGACCTTTAGCAGCACTTCCCCCACAAACACCACTAAAGAACATGACCTTTAGCGGCGCTT
TCCCCACAAATGCCATTAAAA
Found at i:14625968 original size:21 final size:22
Alignment explanation
Indices: 14625923--14625976 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
14625913 TGCAAGGCTC
*
14625923 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGACCAAGGG
**
14625945 ACACGCCCGTGT-GACCCTGGG
1 ACACGCCCGTGTGGACCAAGGG
*
14625966 ACACACCCGTG
1 ACACGCCCGTG
14625977 CTAGAGGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.19, C:0.37, G:0.31, T:0.13
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAAGGG
Found at i:14627477 original size:49 final size:49
Alignment explanation
Indices: 14627400--14627644 Score: 265
Period size: 49 Copynumber: 4.9 Consensus size: 49
14627390 TAGCCAAAGC
* * *
14627400 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
14627449 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * * *
14627499 CATCTGATACACGTAGAAGCTTGCACTTAGTGCTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
14627550 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACAAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
14627599 AATCTGGTACAGGTAGTAGCCTGTACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
14627645 TCACAATAGA
Statistics
Matches: 159, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 79 0.50
50 45 0.28
51 35 0.22
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:14627574 original size:101 final size:98
Alignment explanation
Indices: 14627417--14627644 Score: 276
Period size: 100 Copynumber: 2.3 Consensus size: 98
14627407 TACGCATAGT
* * *
14627417 AGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTAC
1 AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTAC
* * *
14627482 TACACACGTGACCTAACCATCTGATACACGTAGA
66 TACACACGCGA-CAAACAATCTGATACACGTAGA
* * * * *
14627516 AGCTTGCACTTAGTGCTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGT
1 AGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACTTAGT
* * * * *
14627581 ACTACACATGCGACAAATAATCTGGTACAGGTAGT
64 ACTACACACGCGACAAACAATCTGATACACGTAGA
*
14627616 AGCCTGTACTTAGTACTACACACGTGACC
1 AGCCTGCACTTAGTACTACACACGTGACC
14627645 TCACAATAGA
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 24 0.22
100 43 0.40
101 40 0.37
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (98 bp):
AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTAGTAC
TACACACGCGACAAACAATCTGATACACGTAGA
Found at i:14634135 original size:47 final size:47
Alignment explanation
Indices: 14634061--14634261 Score: 357
Period size: 47 Copynumber: 4.3 Consensus size: 47
14634051 TCCTTCGGGA
*
14634061 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
14634108 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14634155 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14634202 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14634249 CTTATCACATATA
1 CTTATCACATATA
14634262 CATATCTTGT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 145 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14637548 original size:43 final size:43
Alignment explanation
Indices: 14637501--14637584 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
14637491 GCATTAAGCT
* * *
14637501 TGCTAGGCATGAAAGCCTGAATACATATCACCGGCACGAATCC
1 TGCTAGGCACGAAAGCCCGAATACAAATCACCGGCACGAATCC
*
14637544 TGCTAGGCACGAAGGCCCGAATACAAATCACCGGCACGAAT
1 TGCTAGGCACGAAAGCCCGAATACAAATCACCGGCACGAAT
14637585 GCTCTTCGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.33, C:0.29, G:0.23, T:0.15
Consensus pattern (43 bp):
TGCTAGGCACGAAAGCCCGAATACAAATCACCGGCACGAATCC
Found at i:14637632 original size:40 final size:40
Alignment explanation
Indices: 14637577--14637812 Score: 339
Period size: 40 Copynumber: 5.9 Consensus size: 40
14637567 CAAATCACCG
14637577 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
14637617 GCACGAATGCTCTTCGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
14637657 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
14637697 GCACGAATGCTCTTTGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* *
14637737 GCACGAATGCTCTTCGGGACTTAACCCGGATATAGCA-TCG
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-A
* * * *
14637777 GCACAAATGCCCTTCGGGACTTAGCCCGAATATAAC
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAAC
14637813 TCACTGAACT
Statistics
Matches: 174, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 174 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
Found at i:14637786 original size:80 final size:80
Alignment explanation
Indices: 14637572--14637770 Score: 380
Period size: 80 Copynumber: 2.5 Consensus size: 80
14637562 GAATACAAAT
*
14637572 CACCGGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
14637637 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
*
14637652 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTTGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
14637717 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
14637732 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATA
14637771 GCATCGGCAC
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 117 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
TTAACCCGGGTATAA
Found at i:14639740 original size:47 final size:47
Alignment explanation
Indices: 14639666--14639867 Score: 341
Period size: 47 Copynumber: 4.3 Consensus size: 47
14639656 TCCTTCGGGA
*
14639666 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
14639713 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14639760 CTTATCACATATATACACTTTCACATTCATCACGTCGGAACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CCATTAGGC
14639808 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14639855 CTTATCACATATA
1 CTTATCACATATA
14639868 CATATCTTGT
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 99 0.69
48 44 0.31
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14639826 original size:95 final size:94
Alignment explanation
Indices: 14639666--14639867 Score: 341
Period size: 95 Copynumber: 2.1 Consensus size: 94
14639656 TCCTTCGGGA
* *
14639666 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACAC
** *
14639731 TTTCACATTCATCACATTTGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
14639760 CTTATCACATATATACACTTTCACATTCATCACGTCGGAACATTAGGCCTTATCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-ACATTAGGCCTTATCACATATATACA
14639825 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
14639855 CTTATCACATATA
1 CTTATCACATATA
14639868 CATATCTTGT
Statistics
Matches: 101, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
94 36 0.36
95 65 0.64
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:14644821 original size:9 final size:9
Alignment explanation
Indices: 14644807--14644969 Score: 83
Period size: 9 Copynumber: 18.6 Consensus size: 9
14644797 CTTTAAATGT
14644807 TTATGTAAG
1 TTATGTAAG
14644816 TTATGTAAG
1 TTATGTAAG
14644825 TTATG-ATA-
1 TTATGTA-AG
* *
14644833 TGATGTATAT
1 TTATGTA-AG
14644843 TTATG-AA-
1 TTATGTAAG
*
14644850 CTATGTAAG
1 TTATGTAAG
*
14644859 TTATGATATG
1 TTATG-TAAG
* * *
14644869 ATATAT-AT
1 TTATGTAAG
14644877 TTATGTAA-
1 TTATGTAAG
*
14644885 TTAATGTAAT
1 TT-ATGTAAG
14644895 TTATGTAAG
1 TTATGTAAG
14644904 TTATGTAAG
1 TTATGTAAG
*
14644913 TTATGTAAT
1 TTATGTAAG
*
14644922 TTATGATATG
1 TTATG-TAAG
* * *
14644932 ATATAT-AT
1 TTATGTAAG
*
14644940 TTCTGT-A-
1 TTATGTAAG
*
14644947 TTGTGTAAG
1 TTATGTAAG
14644956 TTATGTAAG
1 TTATGTAAG
14644965 TTATG
1 TTATG
14644970 ATCCAAAGTT
Statistics
Matches: 118, Mismatches: 24, Indels: 24
0.71 0.14 0.14
Matches are distributed among these distances:
7 9 0.08
8 19 0.16
9 73 0.62
10 17 0.14
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:14644847 original size:88 final size:88
Alignment explanation
Indices: 14644733--14645011 Score: 249
Period size: 97 Copynumber: 3.0 Consensus size: 88
14644723 AAGTTTTACA
14644733 TAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATCCAAAGTTTTTTTTATTC
1 TAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATCCAAAGTTTTTTTTATTC
14644798 TTTAAATGTTTATGTAAGTTATG
66 TTTAAATGTTTATGTAAGTTATG
* * ** *
14644821 TAAGTTATGATATGATGTATATTTATG-AA-CTATGTAAGTTATGATATGATATA-TATTTATGT
1 TAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGAT-CCA-A-AGT-TTT-TTT
* * *
14644883 AATTAATGTAATTTATGTAAGTTATGTAAGTTATG
61 TATT-CTTTAA---ATGT---TTATGTAAGTTATG
*
14644918 TAATTTATGATATGATATATATTTCTGTATTGTGTAAGTTATGTAAGTTATGATCCAAAGTTGTT
1 TAAGTTATGATATGATATATA--T-T-TA---TGTAAGTTATGTAAGTTATGATCCAAA---GTT
*
14644983 TTTTTTAATCTTTAAATGTTTATGTAAGT
56 TTTTTTATTCTTTAAATGTTTATGTAAGT
14645012 CATGATAATC
Statistics
Matches: 148, Mismatches: 18, Indels: 40
0.72 0.09 0.19
Matches are distributed among these distances:
86 15 0.10
87 3 0.02
88 28 0.19
89 4 0.03
90 5 0.03
91 4 0.03
94 4 0.03
97 33 0.22
98 10 0.07
99 1 0.01
100 1 0.01
101 6 0.04
103 1 0.01
104 7 0.05
105 7 0.05
106 18 0.12
107 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.49
Consensus pattern (88 bp):
TAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATCCAAAGTTTTTTTTATTC
TTTAAATGTTTATGTAAGTTATG
Found at i:14644860 original size:34 final size:35
Alignment explanation
Indices: 14644806--14644899 Score: 127
Period size: 34 Copynumber: 2.7 Consensus size: 35
14644796 TCTTTAAATG
* *
14644806 TTTATGTAAGTTATGTAAGTTATGATATGATGTATA
1 TTTATGTAA-CTATGTAAGTTATGATATGATATATA
14644842 TTTATG-AACTATGTAAGTTATGATATGATATATA
1 TTTATGTAACTATGTAAGTTATGATATGATATATA
* *
14644876 TTTATGTAATTAATGTAATTTATG
1 TTTATGTAACT-ATGTAAGTTATG
14644900 TAAGTTATGT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
34 30 0.58
35 5 0.10
36 17 0.33
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.48
Consensus pattern (35 bp):
TTTATGTAACTATGTAAGTTATGATATGATATATA
Found at i:14644927 original size:63 final size:61
Alignment explanation
Indices: 14644851--14644969 Score: 184
Period size: 63 Copynumber: 1.9 Consensus size: 61
14644841 ATTTATGAAC
*
14644851 TATGTAAGTTATGATATGATATATATTTATGTAATTAATGTAATTTATGTAAGTTATGTAAGT
1 TATGTAAGTTATGATATGATATATATTTATGT-ATT-ATGTAAGTTATGTAAGTTATGTAAGT
* * *
14644914 TATGTAATTTATGATATGATATATATTTCTGTATTGTGTAAGTTATGTAAGTTATG
1 TATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATG
14644970 ATCCAAAGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
61 19 0.37
62 3 0.06
63 30 0.58
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.49
Consensus pattern (61 bp):
TATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAGT
Found at i:14645031 original size:35 final size:35
Alignment explanation
Indices: 14644992--14645058 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
14644982 TTTTTTTAAT
14644992 CTTTAAATGTTTATGTAAGTCATGATAATCATAAA
1 CTTTAAATGTTTATGTAAGTCATGATAATCATAAA
* *
14645027 CTTTAAATGTTTATGTAAGTTATGATTATCAT
1 CTTTAAATGTTTATGTAAGTCATGATAATCAT
14645059 CTTTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAGTCATGATAATCATAAA
Found at i:14645075 original size:26 final size:26
Alignment explanation
Indices: 14645046--14645097 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14645036 TTTATGTAAG
14645046 TTATGATTATCATCTTTAAATTTTAA
1 TTATGATTATCATCTTTAAATTTTAA
14645072 TTATGATTATCATCTTTAAATTTTAA
1 TTATGATTATCATCTTTAAATTTTAA
14645098 CTTTAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.54
Consensus pattern (26 bp):
TTATGATTATCATCTTTAAATTTTAA
Found at i:14645103 original size:13 final size:13
Alignment explanation
Indices: 14645085--14645111 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14645075 TGATTATCAT
14645085 CTTTAAATTTTAA
1 CTTTAAATTTTAA
14645098 CTTTAAATTTTAA
1 CTTTAAATTTTAA
14645111 C
1 C
14645112 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:14646133 original size:72 final size:74
Alignment explanation
Indices: 14646021--14646218 Score: 210
Period size: 71 Copynumber: 2.7 Consensus size: 74
14646011 GAATAAATGG
* * *
14646021 TTTCACTTAATATCAACAAACTCAATAAGTTGAATTAAATTAACCTTTTTAAAAAT-TCATAATT
1 TTTCACTTAATATCAA-AAATTCAATAAATTGAATTAAATTAACCTTTTTAAAAATGT-ATAACT
*
14646085 GAACAAAC-GT
64 AAACAAACGGT
* ** * * *
14646095 TTTCACTTAATATC-AAATTTCAATAAATCAAATTAAATTAAGC-TTCTGAAAATGTATAACTAA
1 TTTCACTTAATATCAAAAATTCAATAAATTGAATTAAATTAACCTTTTTAAAAATGTATAACTAA
*
14646158 ATAAACGGT
66 ACAAACGGT
* * *
14646167 TTT-GCTTAATATCAAAACTT-AATAAATTGAACTAAATTAACCTTTTTAAAAA
1 TTTCACTTAATATCAAAAATTCAATAAATTGAATTAAATTAACCTTTTTAAAAA
14646219 CAAATAATTA
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
71 46 0.46
72 40 0.40
73 1 0.01
74 14 0.14
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (74 bp):
TTTCACTTAATATCAAAAATTCAATAAATTGAATTAAATTAACCTTTTTAAAAATGTATAACTAA
ACAAACGGT
Found at i:14646203 original size:71 final size:72
Alignment explanation
Indices: 14646002--14646245 Score: 201
Period size: 72 Copynumber: 3.4 Consensus size: 72
14645992 GGTTTTACTT
* * * *
14646002 TGTATAAC-AGAATAAATGGTTTCACTTAATATCAACAAACTCAATAAGTTGAATTAAATTAACC
1 TGTATAACTA-AATAAACGGTTTTACTTAATATC-A-AAACTTAATAAATTGAATTAAATTAACC
*
14646066 TTTTTAAAAA
63 TTTCTAAAAA
* * * * ** *
14646076 T-TCATAATTGAACAAAC-GTTTTCACTTAATATC-AAATTTCAATAAATCAAATTAAATTAAGC
1 TGT-ATAACTAAATAAACGGTTTT-ACTTAATATCAAAACTT-AATAAATTGAATTAAATTAACC
*
14646138 -TTCTGAAAA
63 TTTCTAAAAA
* *
14646147 TGTATAACTAAATAAACGGTTTTGCTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTT
1 TGTATAACTAAATAAACGGTTTTACTTAATATCAAAACTTAATAAATTGAATTAAATTAACCTTT
*
14646212 TTAAAAA
66 CTAAAAA
*** * **
14646219 CAAATAATTAAATAAACTATTTTACTT
1 TGTATAACTAAATAAACGGTTTTACTT
14646246 GACAATTAAT
Statistics
Matches: 131, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
71 50 0.38
72 56 0.43
73 5 0.04
74 20 0.15
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (72 bp):
TGTATAACTAAATAAACGGTTTTACTTAATATCAAAACTTAATAAATTGAATTAAATTAACCTTT
CTAAAAA
Found at i:14646899 original size:22 final size:22
Alignment explanation
Indices: 14646874--14646919 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
14646864 TAAAAGAGAA
14646874 AGAAAAAGATAATTAGGAGCTC
1 AGAAAAAGATAATTAGGAGCTC
14646896 AGAAAAAGATAATTAGGAGCTC
1 AGAAAAAGATAATTAGGAGCTC
14646918 AG
1 AG
14646920 TAACTGCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.24, T:0.17
Consensus pattern (22 bp):
AGAAAAAGATAATTAGGAGCTC
Found at i:14649627 original size:76 final size:76
Alignment explanation
Indices: 14649501--14649652 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
14649491 AGACAAAATG
14649501 AAAGCGTAAAATGAAAGACTTGGTCAATAGTAGCACTTATAATTAAGGCCACAACTCAATAAAAA
1 AAAGCGTAAAATGAAAGACTTGGTCAATAGTAGCACTTATAATTAAGGCCACAACTCAATAAAAA
14649566 CATATTCAACA
66 CATATTCAACA
14649577 AAAGCGTAAAATGAAAGACTTGGTCAATAGTAGCACTTATAATTAAGGCCACAACTCAATAAAAA
1 AAAGCGTAAAATGAAAGACTTGGTCAATAGTAGCACTTATAATTAAGGCCACAACTCAATAAAAA
14649642 CATATTCAACA
66 CATATTCAACA
14649653 TAACAATGTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.22
Consensus pattern (76 bp):
AAAGCGTAAAATGAAAGACTTGGTCAATAGTAGCACTTATAATTAAGGCCACAACTCAATAAAAA
CATATTCAACA
Found at i:14650210 original size:22 final size:22
Alignment explanation
Indices: 14650167--14650210 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14650157 AACATATAAT
*
14650167 TAAATTAATCAAAATTTACAAA
1 TAAATTAATCAAAAATTACAAA
*
14650189 TAAA-TAATCCAAAAATTGCAAA
1 TAAATTAAT-CAAAAATTACAAA
14650211 CAATAGCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAATTAATCAAAAATTACAAA
Found at i:14660190 original size:21 final size:21
Alignment explanation
Indices: 14660141--14660190 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
14660131 CACCACATAA
* *
14660141 GTGCCTAAAACGACACACGAG
1 GTGCCTGATACGACACACGAG
14660162 GT-CCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
14660182 GTGCCTGAT
1 GTGCCTGAT
14660191 CAGCAAAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:14668530 original size:200 final size:200
Alignment explanation
Indices: 14668189--14668560 Score: 453
Period size: 200 Copynumber: 1.9 Consensus size: 200
14668179 CACGGAGTTA
* * *
14668189 TATTATGTAAGACCGTAGCTAGAAGATGCTACAACATCATAGATAGTCCACCTGGACAATAAACA
1 TATTATGTAAGACCATAGCTAGAAGAAGCTACAACATCATAGATAGTCCACCGGGACAATAAACA
* ** * * *
14668254 TGGGATAGCCGCCCAAGACAATAATCACATAGTTATATTGTGTAAGATTATAGGTGGAATATGCT
66 TGGGATAGCCGCCCAAGACAATAATCACAGAGTTATATTGTGTAAGACCATAGGTGAAAGATACT
** * *
14668319 ACGGTATCATAGATAATCCTCCAGGACCATAAACATAGGATAATCTGTCGGGTTGGTAATCAAAA
131 ACGACATCATAGATAATCCACCAGGACAATAAACATAGGATAATCTGTCGGGTTGGTAATCAAAA
14668384 AATTT
196 AATTT
* * *** * *
14668389 TATTGTGTAAGACCATAGCTTGAAGAAGCTACAACATCATAGATAGTCTGTCGGGATAATAAA-T
1 TATTATGTAAGACCATAGCTAGAAGAAGCTACAACATCATAGATAGTCCACCGGGACAATAAACA
* * **
14668453 TCGGGATAGTCTG-CCAGGACAATAATCATGGAGTTATATTGTGTAAGACCAT-GGCTGAAAGAT
66 T-GGGATAG-CCGCCCAAGACAATAATCACAGAGTTATATTGTGTAAGACCATAGG-TGAAAGAT
* * *
14668516 ACTATGACATCATAGATAGTCCACCAGGACAATAAACATGGGATA
128 ACTACGACATCATAGATAATCCACCAGGACAATAAACATAGGATA
14668561 GTCCACTGGG
Statistics
Matches: 142, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
199 3 0.02
200 137 0.96
201 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (200 bp):
TATTATGTAAGACCATAGCTAGAAGAAGCTACAACATCATAGATAGTCCACCGGGACAATAAACA
TGGGATAGCCGCCCAAGACAATAATCACAGAGTTATATTGTGTAAGACCATAGGTGAAAGATACT
ACGACATCATAGATAATCCACCAGGACAATAAACATAGGATAATCTGTCGGGTTGGTAATCAAAA
AATTT
Found at i:14668559 original size:100 final size:100
Alignment explanation
Indices: 14668175--14668563 Score: 311
Period size: 100 Copynumber: 3.9 Consensus size: 100
14668165 GTTGGGATAG
* * * *
14668175 TAATCACGGAGTTATATTATGTAAGACCGTAGCT-AGAAGATGCTACAACATCATAGATAGTCCA
1 TAATCACAGAGTTATATTGTGTAAGACCATAGCTGA-AAGATACTACAACATCATAGATAGTCCA
* * *
14668239 CCTGGACAATAAACATGGGATAG-CCGCCCAAGACAA
65 CCAGGACAATAAACATGGGATAGTCTG-CCAGGACAA
* ** * * * * *** * *
14668275 TAATCACATAGTTATATTGTGTAAGATTATAGGTGGAATATGCTACGGTATCATAGATAATCCTC
1 TAATCACAGAGTTATATTGTGTAAGACCATAGCTGAAAGATACTACAACATCATAGATAGTCCAC
* * * * * ****
14668340 CAGGACCATAAACATAGGATAATCTGTCGGGTTGG
66 CAGGACAATAAACATGGGATAGTCTGCCAGGACAA
* * * * *
14668375 TAATCAAAAAATTTTATTGTGTAAGACCATAGCTTG-AAGA-AGCTACAACATCATAGATAGTCT
1 TAATCACAGAGTTATATTGTGTAAGACCATAGC-TGAAAGATA-CTACAACATCATAGATAGTCC
** * * *
14668438 GTCGGGATAATAAA-TTCGGGATAGTCTGCCAGGACAA
64 ACCAGGACAATAAACAT-GGGATAGTCTGCCAGGACAA
** * **
14668475 TAATCATGGAGTTATATTGTGTAAGACCATGGCTGAAAGATACTATGACATCATAGATAGTCCAC
1 TAATCACAGAGTTATATTGTGTAAGACCATAGCTGAAAGATACTACAACATCATAGATAGTCCAC
14668540 CAGGACAATAAACATGGGATAGTC
66 CAGGACAATAAACATGGGATAGTC
14668564 CACTGGGACA
Statistics
Matches: 213, Mismatches: 68, Indels: 16
0.72 0.23 0.05
Matches are distributed among these distances:
99 3 0.01
100 204 0.96
101 6 0.03
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (100 bp):
TAATCACAGAGTTATATTGTGTAAGACCATAGCTGAAAGATACTACAACATCATAGATAGTCCAC
CAGGACAATAAACATGGGATAGTCTGCCAGGACAA
Found at i:14668562 original size:27 final size:27
Alignment explanation
Indices: 14668530--14668591 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
14668520 TGACATCATA
*
14668530 GATAGTCCACCAGGACAATAAACATGG
1 GATAGTCCACCAGGACAATAAACACGG
**
14668557 GATAGTCCACTGGGACAATAAACACGG
1 GATAGTCCACCAGGACAATAAACACGG
*
14668584 GGTAGTCC
1 GATAGTCC
14668592 GTCGAGATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (27 bp):
GATAGTCCACCAGGACAATAAACACGG
Found at i:14672787 original size:28 final size:28
Alignment explanation
Indices: 14672755--14672828 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
14672745 TCCCATCGAG
*
14672755 CTTACCTTGTGTTTATTGCCTTGGTAAA
1 CTTACCTTGTGTTTACTGCCTTGGTAAA
* *
14672783 CTTACCTCGTGTTTACTGCCTTGGTAGA
1 CTTACCTTGTGTTTACTGCCTTGGTAAA
* *
14672811 CTTACCTTCTATTTACTG
1 CTTACCTTGTGTTTACTG
14672829 TCCCAGCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.45
Consensus pattern (28 bp):
CTTACCTTGTGTTTACTGCCTTGGTAAA
Found at i:14674138 original size:21 final size:21
Alignment explanation
Indices: 14674114--14674155 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14674104 AGATCTAATT
14674114 AGTACTTTAAATTAGTTATAG
1 AGTACTTTAAATTAGTTATAG
*
14674135 AGTACTTTAAATTATTTATAG
1 AGTACTTTAAATTAGTTATAG
14674156 TACGAAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (21 bp):
AGTACTTTAAATTAGTTATAG
Done.