Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 50 of 373
Found at i:14678859 original size:68 final size:67
Alignment explanation
Indices: 14678787--14678936 Score: 166
Period size: 71 Copynumber: 2.2 Consensus size: 67
14678777 ATACTATGTA
* *
14678787 GTAGCTAGGTCACATGTGTGA-TAC-AG-GATGTATC-CCATGTAGACAAGAGAGCTACGGGAGA
1 GTAGCTAGGTCACATGTGTGATTACAAGTGAAGGA-CACCATGTAGACAAGAGAGCTAC----GA
14678848 GATAAAT
61 GATAAAT
** *
14678855 GTAGCTAGGTTGCATGTGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
1 GTAGCTAGGTCACATGTGTGATTACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
14678920 AT
66 AT
*
14678922 -TGGCTAGGTCACATG
1 GTAGCTAGGTCACATG
14678937 GGTGGTACTA
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
66 12 0.17
67 9 0.13
68 19 0.27
69 2 0.03
70 3 0.04
71 25 0.36
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATTACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
AT
Found at i:14681164 original size:39 final size:39
Alignment explanation
Indices: 14681119--14681355 Score: 357
Period size: 39 Copynumber: 6.1 Consensus size: 39
14681109 ATGCAAGACA
* *
14681119 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* * *
14681158 GTGGAAATATATCTGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
14681197 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
14681236 CTGGAAATATATCCAGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
14681275 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* ** *
14681314 CTGGAAATGTATCCAGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
14681353 CTG
1 CTG
14681356 ATAATATAAT
Statistics
Matches: 178, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 178 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:14687120 original size:3 final size:3
Alignment explanation
Indices: 14687114--14687143 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14687104 GCTGTTTAAC
14687114 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14687144 TTCTCTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14703891 original size:26 final size:26
Alignment explanation
Indices: 14703862--14703943 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
14703852 TGGTACAAAT
*
14703862 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
14703888 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
14703914 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
14703940 TGAT
1 TGAT
14703944 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:14704176 original size:20 final size:20
Alignment explanation
Indices: 14704146--14704197 Score: 95
Period size: 20 Copynumber: 2.5 Consensus size: 20
14704136 GGTAGTTTGC
14704146 TTCTATCTTGATGTTCATGAG
1 TTCT-TCTTGATGTTCATGAG
14704167 TTCTTCTTGATGTTCATGAG
1 TTCTTCTTGATGTTCATGAG
14704187 TTCTTCTTGAT
1 TTCTTCTTGAT
14704198 TCTACCTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.52
Consensus pattern (20 bp):
TTCTTCTTGATGTTCATGAG
Found at i:14705601 original size:27 final size:27
Alignment explanation
Indices: 14705561--14705719 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
14705551 AGGAAGCATC
*
14705561 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
14705588 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
14705614 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
14705642 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
14705669 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
14705696 CTGGTGACTCCGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
14705720 GCAGCCTTGC
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.09
27 101 0.88
28 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:14705641 original size:54 final size:54
Alignment explanation
Indices: 14705559--14705719 Score: 245
Period size: 54 Copynumber: 3.0 Consensus size: 54
14705549 GGAGGAAGCA
14705559 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
14705613 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
* * * * * *
14705667 TTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTGACTCCGTCACA-ATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTG
14705720 GCAGCCTTGC
Statistics
Matches: 100, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
Found at i:14705713 original size:81 final size:80
Alignment explanation
Indices: 14705561--14705719 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 80
14705551 AGGAAGCATC
* *
14705561 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
14705626 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
14705642 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATTTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
14705705 CCGTCACAATATCTG
64 ACGCCACAATATCTG
14705720 GCAGCCTTGC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
80 15 0.22
81 53 0.78
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATATCTGAT
Found at i:14707663 original size:55 final size:54
Alignment explanation
Indices: 14707578--14707690 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 54
14707568 AGGAAGCGTC
*
14707578 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTG-CTACATATACCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGTC-ACAT-TACCTGTT
* * *
14707633 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGTCACATTACCTGTT
14707687 CTGG
1 CTGG
14707691 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
54 19 0.37
55 32 0.62
56 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGTCACATTACCTGTT
Found at i:14707672 original size:28 final size:26
Alignment explanation
Indices: 14707578--14707690 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
14707568 AGGAAGCGTC
* *
14707578 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
* *
14707606 CTGGTGGCTCTGCTACATATACCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
14707633 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
14707661 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
14707687 CTGG
1 CTGG
14707691 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.09
27 36 0.49
28 31 0.42
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:14711225 original size:39 final size:40
Alignment explanation
Indices: 14711171--14711273 Score: 163
Period size: 39 Copynumber: 2.6 Consensus size: 40
14711161 TTGGCTCGGA
* * *
14711171 TATAACAACCAGCACGAATTCCTTCGGGACTTAA-CCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
14711210 TATAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
14711250 TATAATAACCCGCACGAATGCCTT
1 TATAATAACCCGCACGAATGCCTT
14711274 GCACATATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 30 0.52
40 28 0.48
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:14729426 original size:40 final size:40
Alignment explanation
Indices: 14729371--14729474 Score: 190
Period size: 40 Copynumber: 2.6 Consensus size: 40
14729361 TTGGCTCGGA
* *
14729371 TATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
14729411 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
14729451 TATAATAACCCGCACGAATGCCTT
1 TATAATAACCCGCACGAATGCCTT
14729475 GCACATATAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:14734299 original size:13 final size:13
Alignment explanation
Indices: 14734281--14734310 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14734271 AGCACACAGG
14734281 CATGTGACTTGGC
1 CATGTGACTTGGC
*
14734294 CATGTGGCTTGGC
1 CATGTGACTTGGC
14734307 CATG
1 CATG
14734311 AGGCATAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.30
Consensus pattern (13 bp):
CATGTGACTTGGC
Found at i:14739449 original size:22 final size:22
Alignment explanation
Indices: 14739421--14739465 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14739411 GAGTTGGTGT
14739421 AAAAAGGTGACACGCAACCTTG
1 AAAAAGGTGACACGCAACCTTG
14739443 AAAAAGGTGACACGCAACCTTG
1 AAAAAGGTGACACGCAACCTTG
14739465 A
1 A
14739466 GGAAAACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.22, G:0.22, T:0.13
Consensus pattern (22 bp):
AAAAAGGTGACACGCAACCTTG
Found at i:14751178 original size:27 final size:27
Alignment explanation
Indices: 14751114--14751178 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
14751104 GCCAGACCCG
* *
14751114 GAGGCGCGACCAGTCGCTCCTGTTGCA
1 GAGGCGCGACTAGTCGCTCCTGCTGCA
*
14751141 GAGGCGTGACTAGTCGCTCCTGCTGCA
1 GAGGCGCGACTAGTCGCTCCTGCTGCA
14751168 GAGGCGCGACT
1 GAGGCGCGACT
14751179 CCCCTACAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.18
Consensus pattern (27 bp):
GAGGCGCGACTAGTCGCTCCTGCTGCA
Found at i:14753572 original size:40 final size:39
Alignment explanation
Indices: 14753384--14753565 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
14753374 AATGATGTCT
* * * *
14753384 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AACC
* *
14753424 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACC
* * *
14753464 GGGCTAAG-CCCGAAGGCATTGGTGCGAGGTACTAAATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-CC
*
14753503 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACC
*
14753543 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
14753566 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACC
Found at i:14753587 original size:79 final size:79
Alignment explanation
Indices: 14753434--14753598 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
14753424 GGACTAAGAT
* **
14753434 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGGTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGGTACTAA
*
14753499 ATTCGGGTTAAGTC
66 ATTCGGGTTAAATC
* *
14753513 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA-GTAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGGTA-C
* * *
14753576 TATA-TCTGGTTAAATT
63 TAAATTCGGGTTAAATC
14753592 CCGAAGG
1 CCGAAGG
14753599 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 52 0.70
80 20 0.27
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGGTACTAA
ATTCGGGTTAAATC
Found at i:14758471 original size:33 final size:33
Alignment explanation
Indices: 14758417--14758492 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
14758407 CAAGCCGGGT
* *
14758417 GGAGTAGAGAACGGCGCTGGATATGGGCCAGGA
1 GGAGTAGAGTACGGCGCTGGATATGAGCCAGGA
* * *
14758450 GGAGTAGAGTACGGTGGTGGATATGAGCCGGGA
1 GGAGTAGAGTACGGCGCTGGATATGAGCCAGGA
14758483 GGAGTAGAGT
1 GGAGTAGAGT
14758493 GCAAATGTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.26, C:0.11, G:0.47, T:0.16
Consensus pattern (33 bp):
GGAGTAGAGTACGGCGCTGGATATGAGCCAGGA
Found at i:14761366 original size:3 final size:3
Alignment explanation
Indices: 14761360--14761434 Score: 89
Period size: 3 Copynumber: 24.7 Consensus size: 3
14761350 ACTAACATTT
* * * *
14761360 TTC TTC TTTC TCC TCC TTC TCC TTC TTC TTC TTC TTC TTT TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
14761406 TTC TTC TTC TTC TTC TTC TT- TTC TCTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC T-TC TT
14761435 TGCTGCTGCA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.03
3 55 0.87
4 6 0.10
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:14777524 original size:38 final size:40
Alignment explanation
Indices: 14777436--14777596 Score: 153
Period size: 38 Copynumber: 4.3 Consensus size: 40
14777426 TCCTCGTTCA
* * ** *
14777436 AATGCCTTCGGGACAT-AGCCGG-TTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
14777473 -ATGCCTTCGGGAC-TAACCCGGATTTAACAA-TCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
14777510 AATGCCTTCGGGACTTAACCCGG--TTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
14777548 AATGCC-TC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
14777586 AAGGCCTTCGG
1 AATGCCTTCGG
14777597 ATCTTATCCG
Statistics
Matches: 105, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
35 1 0.01
36 36 0.34
37 14 0.13
38 43 0.41
39 10 0.10
40 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:14785377 original size:40 final size:39
Alignment explanation
Indices: 14785274--14785496 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
14785264 TCCTCGTTCA
* * ** * *
14785274 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
* *
14785313 AATGCCTTCGGGACATAACTCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
14785352 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
14785392 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
14785432 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
14785473 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14785497 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 38 0.25
40 107 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:14785440 original size:80 final size:79
Alignment explanation
Indices: 14785272--14785496 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
14785262 GCTCCTCGTT
* * ** * * *
14785272 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACTCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
14785337 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
14785351 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
14785416 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
14785431 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
14785494 GGA
63 GGA
14785497 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 41 0.33
80 76 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:14785496 original size:120 final size:119
Alignment explanation
Indices: 14785274--14785496 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 119
14785264 TCCTCGTTCA
* * *
14785274 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACTCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACTCGGATA
* *
14785339 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * *
14785393 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAA-TCCGG
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACT-CGG
* * *
14785456 ATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
63 ATATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
14785497 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 39 0.44
120 41 0.47
121 8 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACTCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:14791946 original size:20 final size:20
Alignment explanation
Indices: 14791921--14791965 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14791911 AGGGACTAAA
* *
14791921 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
14791941 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
14791961 ATGAA
1 ATGAA
14791966 TACATGTACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:14794150 original size:42 final size:43
Alignment explanation
Indices: 14794049--14794162 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
14794039 AGCTCGTACA
* * *
14794049 ATGCCAAC-ATCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCAAATATCG
*
14794092 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAATATCG
* *
14794134 ATGCCGA-TGTCCCAGACATGGTCTTACAC
1 ATGCC-ACTATCCCAGACAGGGTCTTACAC
14794163 ATAAATCTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
42 28 0.45
43 33 0.53
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:14802673 original size:26 final size:26
Alignment explanation
Indices: 14802637--14802746 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
14802627 TGATACAAAT
14802637 TGATAATAGGTTAGGTAAAT-TTTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
14802663 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
14802689 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
14802715 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
14802741 TGATAA
1 TGATAA
14802747 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 77 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:14804406 original size:27 final size:27
Alignment explanation
Indices: 14804365--14804504 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
14804355 GAGGAAGCGT
*
14804365 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
14804392 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
14804419 TCTGGTGGCTCTGCCACATATATCT-A
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
14804445 TTCTGGTGGCTCTGCCACGATTATCTGTA
1 -TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
14804474 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
14804500 TCTGG
1 TCTGG
14804505 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 15 0.15
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:14806556 original size:14 final size:13
Alignment explanation
Indices: 14806519--14806560 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
14806509 CCCATGATTG
14806519 ATATATATATA-C
1 ATATATATATAGC
14806531 ATATATTCATATAGC
1 ATATA-T-ATATAGC
14806546 ATAATATATATAGC
1 AT-ATATATATAGC
14806560 A
1 A
14806561 AAAACACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.19
13 1 0.04
14 13 0.50
15 4 0.15
16 3 0.12
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.38
Consensus pattern (13 bp):
ATATATATATAGC
Found at i:14806591 original size:23 final size:23
Alignment explanation
Indices: 14806565--14806638 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 23
14806555 ATAGCAAAAA
14806565 CACCGACTTAACCTTCATGCAAT
1 CACCGACTTAACCTTCATGCAAT
** *
14806588 CACCGTGTTGAAACATAGATCATGCAAT
1 CACCGACTT--AACCT---TCATGCAAT
* *
14806616 GACCGACTTGACCTTCATGCAAT
1 CACCGACTTAACCTTCATGCAAT
14806639 ATTTATTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
23 16 0.42
25 4 0.11
26 3 0.08
28 15 0.39
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (23 bp):
CACCGACTTAACCTTCATGCAAT
Found at i:14809286 original size:86 final size:89
Alignment explanation
Indices: 14809182--14809356 Score: 266
Period size: 86 Copynumber: 2.0 Consensus size: 89
14809172 TTATTATGTC
* *
14809182 ATGTTTAATAGTATAAATTGTAATTACACAATTATATAATTTATAT-T-TTTTT-AAAATATTAA
1 ATGTTTAATAGTACAAATTGTAATTACACAATTACATAATTTATATATATTTTTAAAAATATTAA
*
14809244 TTATTATAAAAACTATTAGTATGA
66 TTACTATAAAAACTATTAGTATGA
* * *
14809268 ATGTTTAGTAGTACAAATTGTAATTGCACAGTTACATAATTTATATATATTTTTAAAAATATTAA
1 ATGTTTAATAGTACAAATTGTAATTACACAATTACATAATTTATATATATTTTTAAAAATATTAA
*
14809333 TTACTATAAAAATTATTAGTATGA
66 TTACTATAAAAACTATTAGTATGA
14809357 TAAATATAAT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
86 41 0.52
87 1 0.01
88 5 0.06
89 32 0.41
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (89 bp):
ATGTTTAATAGTACAAATTGTAATTACACAATTACATAATTTATATATATTTTTAAAAATATTAA
TTACTATAAAAACTATTAGTATGA
Found at i:14818355 original size:38 final size:37
Alignment explanation
Indices: 14818313--14818523 Score: 201
Period size: 38 Copynumber: 5.5 Consensus size: 37
14818303 AGTTTACAGA
* *
14818313 CCCGCAGGCTATATACTGGTATTATATCCAGGTTAAAT
1 CCCGCAGGCT-TGTGCTGGTATTATATCCAGGTTAAAT
* *
14818351 CCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGC-TTGTGCTGGTATTATATCCAGGTTAAAT
* *
14818389 CCCGCAAGCTTTGTGCTGGTAATATATCC-GAGTTAAAT
1 CCCGCAGGC-TTGTGCTGGTATTATATCCAG-GTTAAAT
14818427 CCCGCAGGCTTCGTGCTGGTATTATAT-CAGGGTTAAAT
1 CCCGCAGGCTT-GTGCTGGTATTATATCCA-GGTTAAAT
** * * *
14818465 CTTGCAAGCTTAGTGCTGGTATTATATTCGAGCTTAAAGT
1 CCCGCAGGCTT-GTGCTGGTATTATA-TCCAGGTTAAA-T
* *
14818505 CCCTCAGGTTTTGTGCTGG
1 CCCGCAGG-CTTGTGCTGG
14818524 CGACTAGATT
Statistics
Matches: 146, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
37 4 0.03
38 118 0.81
39 9 0.06
40 13 0.09
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (37 bp):
CCCGCAGGCTTGTGCTGGTATTATATCCAGGTTAAAT
Found at i:14818415 original size:76 final size:76
Alignment explanation
Indices: 14818328--14818523 Score: 259
Period size: 76 Copynumber: 2.6 Consensus size: 76
14818318 AGGCTATATA
*
14818328 CTGGTATTATATCCAGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCG
1 CTGGTATTATATCCAGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCAGGGTTAAATCCCG
*
14818393 CAAGCTTTGTG
66 CAAGCTTAGTG
* * * **
14818404 CTGGTAATATATCC-GAGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCAGGGTTAAATCTT
1 CTGGTATTATATCCAG-GTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCAGGGTTAAATCCC
14818468 GCAAGCTTAGTG
65 GCAAGCTTAGTG
* * * *
14818480 CTGGTATTATATTCGAGCTTAAAGTCCCTCAGGTTTTGTGCTGG
1 CTGGTATTATA-TCCAGGTTAAA-TCCCGCAGGCTTTGTGCTGG
14818524 CGACTAGATT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
75 1 0.01
76 77 0.75
77 7 0.07
78 18 0.17
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (76 bp):
CTGGTATTATATCCAGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCAGGGTTAAATCCCG
CAAGCTTAGTG
Found at i:14824995 original size:38 final size:38
Alignment explanation
Indices: 14824944--14825101 Score: 156
Period size: 38 Copynumber: 4.1 Consensus size: 38
14824934 ATAAATTAGA
14824944 TGGTAATATATCCGGGTTAAATCCCGCAAGCTTTGTGC
1 TGGTAATATATCCGGGTTAAATCCCGCAAGCTTTGTGC
* * *
14824982 TGGTAATATATCCGAGTTAAATCCCGCAAGCTTCGTGT
1 TGGTAATATATCCGGGTTAAATCCCGCAAGCTTTGTGC
* * * * *
14825020 TGGTATTATATCCAGGTTAAATCTTC-CAGGCTTAGTGC
1 TGGTAATATATCCGGGTTAAATC-CCGCAAGCTTTGTGC
* * * * * *
14825058 TGGTATTATATTCGAGCTTAAAGTCCCACAGGTTTTGTGC
1 TGGTAATATATCCG-GGTTAAA-TCCCGCAAGCTTTGTGC
14825098 TGGT
1 TGGT
14825102 GACTGGATTC
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 76 0.76
39 8 0.08
40 16 0.16
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (38 bp):
TGGTAATATATCCGGGTTAAATCCCGCAAGCTTTGTGC
Found at i:14827814 original size:41 final size:42
Alignment explanation
Indices: 14827704--14827849 Score: 141
Period size: 43 Copynumber: 3.5 Consensus size: 42
14827694 TATCGAGATG
* * *
14827704 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAATTG
1 TGATTACATATAAGACCATGTCTGGGACATTGGCATCG-ATTA
* *
14827747 TTATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TTA
1 TGATTACATATAAGACCATGTCTGGGACATTGGCATCGATTA
* * * * ** *
14827788 TGATTTCGTATAAGACCCTGTCTGGGATAGCGGCATCGATATG
1 TGATTACATATAAGACCATGTCTGGGACATTGGCATCGAT-TA
* *
14827831 TGATAACATGTAAGACCAT
1 TGATTACATATAAGACCAT
14827850 ATCCGGGATA
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 32 0.38
42 1 0.01
43 51 0.61
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTACATATAAGACCATGTCTGGGACATTGGCATCGATTA
Found at i:14832887 original size:43 final size:43
Alignment explanation
Indices: 14832742--14832887 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 43
14832732 TGTGTTTTCG
* * * *
14832742 TGTAAGACCATGTCTGGGACGTTGGTATCGAT-TTATGAATTGCA
1 TGTAAGACCACGTCTGGGACGCTGGCATCGATATT-TG-ATTACA
* * * *
14832786 TGTAAGACAACGTCTGGGATGCTGGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGCTGGCATCGATATTTGATTACA
*
14832828 TGTAAGACC-CTATCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GCTGGCATCGATATTTGATTACA
14832871 TGTAAGACCACGTCTGG
1 TGTAAGACCACGTCTGG
14832888 AACGTTGACA
Statistics
Matches: 84, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 28 0.33
44 28 0.33
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGCTGGCATCGATATTTGATTACA
Found at i:14833648 original size:22 final size:20
Alignment explanation
Indices: 14833618--14833670 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 20
14833608 TATTGTAACA
*
14833618 TATGCTTTGGTATGATGTTGG
1 TATGATTTGGTATGAT-TTGG
*
14833639 TTTAGATTTGGTATGATTTGG
1 TAT-GATTTGGTATGATTTGG
14833660 TATGATTTGGT
1 TATGATTTGGT
14833671 TGGTGAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.29
21 8 0.29
22 12 0.43
ACGTcount: A:0.17, C:0.02, G:0.30, T:0.51
Consensus pattern (20 bp):
TATGATTTGGTATGATTTGG
Found at i:14833658 original size:10 final size:10
Alignment explanation
Indices: 14833618--14833670 Score: 70
Period size: 10 Copynumber: 5.1 Consensus size: 10
14833608 TATTGTAACA
*
14833618 TATGCTTTGG
1 TATGATTTGG
14833628 TATGATGTTGG
1 TATGAT-TTGG
*
14833639 TTTAGATTTGG
1 TAT-GATTTGG
14833650 TATGATTTGG
1 TATGATTTGG
14833660 TATGATTTGG
1 TATGATTTGG
14833670 T
1 T
14833671 TGGTGAATTG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 23 0.61
11 12 0.32
12 3 0.08
ACGTcount: A:0.17, C:0.02, G:0.30, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:14836683 original size:43 final size:42
Alignment explanation
Indices: 14836548--14836709 Score: 139
Period size: 43 Copynumber: 3.8 Consensus size: 42
14836538 TGTGTTTTTG
** * *
14836548 TGTAAGACCATGAATGGGACGTTGGCATCG-ATTTATGAATTGCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTA-TT-TG-ATTACA
* * * * ***
14836592 TGTAAGACAACGTTTGGGATGTTGGCATCGTATTTGATTTTG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTACA
* *
14836634 TGTAAGACCCTTTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCG-TATTTGATTACA
*
14836677 TGTAAGACCATGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTAT
14836710 GAGCTTTTTG
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 30 0.32
43 37 0.39
44 27 0.28
45 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:14836719 original size:86 final size:86
Alignment explanation
Indices: 14836536--14836719 Score: 185
Period size: 86 Copynumber: 2.1 Consensus size: 86
14836526 TAGGATCCGA
* * *
14836536 TATGTGTTTTTGTGTAAGACCATGAATGGGACGTTGGCATCGATTTATGAATTGCGTGTAAGACA
1 TATGAGTTTTTGTGTAAGACCATGAATGGGACGTTGGCATCGATTTATGAATTACATGTAAGACA
* *
14836601 ACGTTTGGGATGTTGGCATCG
66 ACGTCTGGGACGTTGGCATCG
** * * ***
14836622 TATTTGATTTTGTGTAAGACCCTTTCTGGGACAG-TGGCATCGATATT-TG-ATTACATGTAAGA
1 TATGAGTTTTTGTGTAAGACCATGAATGGGAC-GTTGGCATCGAT-TTATGAATTACATGTAAGA
* * *
14836684 CCATGTCTGGGACGTTGGCATTG
64 CAACGTCTGGGACGTTGGCATCG
14836707 TATGAGCTTTTTG
1 TATGAG-TTTTTG
14836720 AGTTATCTGC
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
85 33 0.42
86 43 0.54
87 3 0.04
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.37
Consensus pattern (86 bp):
TATGAGTTTTTGTGTAAGACCATGAATGGGACGTTGGCATCGATTTATGAATTACATGTAAGACA
ACGTCTGGGACGTTGGCATCG
Found at i:14838815 original size:42 final size:41
Alignment explanation
Indices: 14838734--14838899 Score: 226
Period size: 41 Copynumber: 4.0 Consensus size: 41
14838724 ATAATAATGA
* * * *
14838734 TGAATT-GCACATACATGCCCCTGTTTGTACTTCGATACCCT
1 TGAATTAG-ACATACGTGCCCTTATTTGTACTTCGGTACCCT
*
14838775 TGAATTAGACATATGTGCCCTTTATTTGTACTTCGGTACCCT
1 TGAATTAGACATACGTGCCC-TTATTTGTACTTCGGTACCCT
* *
14838817 TGAATTAGACATACGTGCCCTTATTTGTAGTTCAGTACCCT
1 TGAATTAGACATACGTGCCCTTATTTGTACTTCGGTACCCT
*
14838858 TGAATTAGACATACATGCCCTTATTTGTACTTCGGTAGCCCT
1 TGAATTAGACATACGTGCCCTTATTTGTACTTCGGTA-CCCT
14838900 GGATGTACTT
Statistics
Matches: 111, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
41 69 0.62
42 42 0.38
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (41 bp):
TGAATTAGACATACGTGCCCTTATTTGTACTTCGGTACCCT
Found at i:14838837 original size:21 final size:21
Alignment explanation
Indices: 14838771--14838838 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
14838761 TACTTCGATA
*
14838771 CCCTTGAATTAGACATATGTG
1 CCCTTGAATTAGACATACGTG
* * * *
14838792 CCCTT-TATTTGTAC-TTCGGTA
1 CCCTTGAATTAG-ACATAC-GTG
14838813 CCCTTGAATTAGACATACGTG
1 CCCTTGAATTAGACATACGTG
14838834 CCCTT
1 CCCTT
14838839 ATTTGTAGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 8
0.67 0.18 0.16
Matches are distributed among these distances:
20 5 0.15
21 23 0.68
22 6 0.18
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (21 bp):
CCCTTGAATTAGACATACGTG
Found at i:14838877 original size:83 final size:83
Alignment explanation
Indices: 14838734--14838899 Score: 230
Period size: 83 Copynumber: 2.0 Consensus size: 83
14838724 ATAATAATGA
* **
14838734 TGAATTGCACATACATGCCCCTGTTTGTACTTCGATACCCTTGAATTAGACATATGTGCCCTTTA
1 TGAATTGCACATACATGCCCCTATTTGTACTTCGATACCCTTGAATTAGACATACATGCCC-TTA
14838799 TTTGTACTTCGGTA-CCCT
65 TTTGTACTTCGGTAGCCCT
* * *
14838817 TGAATTAG-ACATACGTGCCCTTATTTGTAGTTC-AGTACCCTTGAATTAGACATACATGCCCTT
1 TGAATT-GCACATACATGCCCCTATTTGTACTTCGA-TACCCTTGAATTAGACATACATGCCCTT
14838880 ATTTGTACTTCGGTAGCCCT
64 ATTTGTACTTCGGTAGCCCT
14838900 GGATGTACTT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
82 18 0.24
83 55 0.74
84 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (83 bp):
TGAATTGCACATACATGCCCCTATTTGTACTTCGATACCCTTGAATTAGACATACATGCCCTTAT
TTGTACTTCGGTAGCCCT
Found at i:14842772 original size:46 final size:46
Alignment explanation
Indices: 14842722--14842848 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
14842712 ATATGTGGCG
*
14842722 AAGCCGAATGACTAATGCGAAACATGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* *
14842768 AAGCCGAAAGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* * *
14842814 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATG
14842849 TGTATATATA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.37, C:0.10, G:0.31, T:0.22
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
Found at i:14859322 original size:41 final size:39
Alignment explanation
Indices: 14859263--14859377 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
14859253 AGAATAATGA
*
14859263 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGG--CACC
* * * *
14859304 TGAATTGCACATACGTG-CCCTATTTGTAGTTCGGCATC
1 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGGCACC
*
14859342 TGATAATTGCACATATGTGCCCCTGTCTGTACTTCG
1 TG--AATTGCACATATGTGCCCCTGTTTGTACTTCG
14859378 ATACACTTGG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
38 4 0.06
40 29 0.47
41 29 0.47
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (39 bp):
TGAATTGCACATATGTGCCCCTGTTTGTACTTCGGCACC
Found at i:14860992 original size:21 final size:22
Alignment explanation
Indices: 14860952--14860992 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14860942 TTCCAAATAA
* *
14860952 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
14860974 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
14860993 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:14861707 original size:21 final size:22
Alignment explanation
Indices: 14861667--14861707 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14861657 TTCCAAATAA
* *
14861667 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
14861689 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
14861708 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:14861902 original size:716 final size:716
Alignment explanation
Indices: 14860529--14862449 Score: 3531
Period size: 716 Copynumber: 2.7 Consensus size: 716
14860519 GTCACACGTA
* * * *
14860529 TAACACCCTTAACCCGTATCTATCACCGGAATAGGGATTCGGAGTATTACCAAAATTTACAGATC
1 TAACACCCTTAACCCGTATCCATCGCTGGAATAGGGATTCAGAGTATTACCAAAATTTACAGATC
* *
14860594 ATTTAACAAAAAATT-CGCTTCACATAACATTCATACCTGAAATTAGTCAAATTTAATCATAGTG
66 ATTTAAC-AAAAATTCCGCTTCACATAACATTCATACCTGAAATCAATCAAATTTAATCATAGTG
*
14860658 TCCCTTATGTGAGCCATCGAGGCCCAGAATATAGATATCGAGACTTAACCGAGAACTCAGAAAAT
130 TCCCTTATGTGAGCCATCGAGGCCCAGAATATAGATATCGGGACTTAACCGAGAACTCAGAAAAT
*
14860723 TTTTCAAAAATATTTAAAATTTTTCAACACTGCAAGGGGTCACAGGCTGTGTGGTCAGATTGTGT
195 TTTTCAAAAATATTTAAAATTTTTCAACACTGCAAGGGGTCACAGGCTGTGTGGTCAGATCGTGT
*
14860788 GGTTCACACAATATTCACAAAGTTATCATCATTTCATATGAAATAACACATCATGAAATTCATAA
260 GGTTCACACAATATTCACAAAGTTATCATCAATTCATATGAAATAACACATCATGAAATTCATAA
*
14860853 AATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTTTATTATAACG
325 AATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTGTATTATAACG
14860918 ATAATCATAATTTCATAATAAATATTCCAAATAAAACATTATATCATTTCTAATTCAACATTTAT
390 ATAATCATAATTTCATAATAAATATTCCAAATAAAACATTATATCATTTCTAATTCAACATTTAT
14860983 CAATTATAATCGGGCATGTGATCAATTTATACACAAGTTTCAACTCATCATAAACACATTCTTAC
455 CAATTATAATCGGGCATGTGATCAATTTATACACAAGTTTCAACTCATCATAAACACATTCTTAC
*
14861048 TCAGACACATTAGTGTCACTTTCAACACTTTCTGAAACAACTCGATCGAAAAGTATTTCTGTCTA
520 TCAGACACATTAGTGTCACTTTCAACACTTTCTGAAACAACTCGATCGAAAACTATTTCTGTCTA
14861113 TAAGTAAAAAAAAATTGATCGGATTACACACATCACTCTATCACAGATTTATATGGCATGTATCT
585 TAAGTAAAAAAAAATTGATCGGATTACACACATCACTCTATCACAGATTTATATGGCATGTATCT
* * * *
14861178 CTAAACACTTTACACATCTCATTTGATCCGAGATTCGGCTAAACCGAAGGTTTGATACCACTAAA
650 CTAAACACTTTACACATCTCATTTCATCCAAGAGTCGGCTAAACCGAAGCTTTGATACCACTAAA
14861243 TG
715 TG
* * * *
14861245 TAACACCCTTAACCTGTATCCGTCGTTGGAATAGGGATTCAGAGTATTACCAAAATTTACAAATC
1 TAACACCCTTAACCCGTATCCATCGCTGGAATAGGGATTCAGAGTATTACCAAAATTTACAGATC
14861310 ATTTAACAAAAATTCCGCTTCACATAACATTCATACCTGAAATCAATCAAATTTAATCATAGTGT
66 ATTTAACAAAAATTCCGCTTCACATAACATTCATACCTGAAATCAATCAAATTTAATCATAGTGT
*
14861375 CCCTTATGTGAGCCATTGAGGCCCAGAATATAGATATCGGGACTTAACCGAGAACTCAGAAAATT
131 CCCTTATGTGAGCCATCGAGGCCCAGAATATAGATATCGGGACTTAACCGAGAACTCAGAAAATT
14861440 TTTCAAAAATATTTAAAATTTTTCAACACTG-AAGGGGTCACAGGCTGTGTGGTCAGATCGTGTG
196 TTTCAAAAATATTTAAAATTTTTCAACACTGCAAGGGGTCACAGGCTGTGTGGTCAGATCGTGTG
14861504 GTTCACACAATATTCACAAAGTTATCATCAATTCATATGAAATAACACATCATGAAATTCATAAA
261 GTTCACACAATATTCACAAAGTTATCATCAATTCATATGAAATAACACATCATGAAATTCATAAA
14861569 ATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTGTATTATAACGA
326 ATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTGTATTATAACGA
14861634 TAATCATAATTTCATAATAAATATTCCAAATAAAACATTATATCATTTCTAATTCAACATTTATC
391 TAATCATAATTTCATAATAAATATTCCAAATAAAACATTATATCATTTCTAATTCAACATTTATC
14861699 AATTATAATCGGGCATGTGATCAATTTATACACAAGTTTCAACTCATCATAAACACATTCTTACT
456 AATTATAATCGGGCATGTGATCAATTTATACACAAGTTTCAACTCATCATAAACACATTCTTACT
* *
14861764 CTGACACATTAGTGTCACTTTCAACACTTTCTGAAATAACTCGATCGAAAACTATTTCTGTCTAT
521 CAGACACATTAGTGTCACTTTCAACACTTTCTGAAACAACTCGATCGAAAACTATTTCTGTCTAT
14861829 AAGTAAAAAAAAAATTGATCGGATTACACACATCACTCTATCACAGATTTATATGGCATGTATCT
586 AAGT-AAAAAAAAATTGATCGGATTACACACATCACTCTATCACAGATTTATATGGCATGTATCT
* *
14861894 CTAAACACTTTACACATCTTATTTCATCCAAGAGTCGGCTAAACCGAAGCTTTGGTACCACTAAA
650 CTAAACACTTTACACATCTCATTTCATCCAAGAGTCGGCTAAACCGAAGCTTTGATACCACTAAA
14861959 TG
715 TG
14861961 TAACACCCTTAACCCGTATCCATCGCTGGAATAGGGATTCAGAGTATTACCAAAATTTACAGATC
1 TAACACCCTTAACCCGTATCCATCGCTGGAATAGGGATTCAGAGTATTACCAAAATTTACAGATC
*
14862026 ATTTAACAAAAATTCCGCTTCACATAACATTCATACCTAAAATCAATCAAATTTAATCATAGTGT
66 ATTTAACAAAAATTCCGCTTCACATAACATTCATACCTGAAATCAATCAAATTTAATCATAGTGT
14862091 CCCTTATGTGAGCCATCGAGGCCCAGAATATAGATATCGGGACTTAACCGAGAACTCAGAAAATT
131 CCCTTATGTGAGCCATCGAGGCCCAGAATATAGATATCGGGACTTAACCGAGAACTCAGAAAATT
* * * *
14862156 TTTCGAAAATATTTAAAATTTTCCAACACTGCAAGAGGTCACAAGCTGTGTGGTCAGATCGTGTG
196 TTTCAAAAATATTTAAAATTTTTCAACACTGCAAGGGGTCACAGGCTGTGTGGTCAGATCGTGTG
*
14862221 GTTCACACAATATTCACGAAGTTATCATCAATTCATATGAAATAACACATCATGAAATTCATAAA
261 GTTCACACAATATTCACAAAGTTATCATCAATTCATATGAAATAACACATCATGAAATTCATAAA
14862286 ATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTGTATTATAACGA
326 ATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTGTATTATAACGA
*
14862351 TAATCATAATTTCATAATAAATATTCCAAATAAAATATTATATCATTTCTAATTCAACATTTATC
391 TAATCATAATTTCATAATAAATATTCCAAATAAAACATTATATCATTTCTAATTCAACATTTATC
14862416 AATTATAATCGGGCATGTGATCAATTTATACACA
456 AATTATAATCGGGCATGTGATCAATTTATACACA
14862450 GGTCATTCAT
Statistics
Matches: 1166, Mismatches: 36, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
715 363 0.31
716 545 0.47
717 258 0.22
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (716 bp):
TAACACCCTTAACCCGTATCCATCGCTGGAATAGGGATTCAGAGTATTACCAAAATTTACAGATC
ATTTAACAAAAATTCCGCTTCACATAACATTCATACCTGAAATCAATCAAATTTAATCATAGTGT
CCCTTATGTGAGCCATCGAGGCCCAGAATATAGATATCGGGACTTAACCGAGAACTCAGAAAATT
TTTCAAAAATATTTAAAATTTTTCAACACTGCAAGGGGTCACAGGCTGTGTGGTCAGATCGTGTG
GTTCACACAATATTCACAAAGTTATCATCAATTCATATGAAATAACACATCATGAAATTCATAAA
ATTAATAAATGGCCACTAAAATTTAGTTATACAAACTCATAAGTACGATTTTTGTATTATAACGA
TAATCATAATTTCATAATAAATATTCCAAATAAAACATTATATCATTTCTAATTCAACATTTATC
AATTATAATCGGGCATGTGATCAATTTATACACAAGTTTCAACTCATCATAAACACATTCTTACT
CAGACACATTAGTGTCACTTTCAACACTTTCTGAAACAACTCGATCGAAAACTATTTCTGTCTAT
AAGTAAAAAAAAATTGATCGGATTACACACATCACTCTATCACAGATTTATATGGCATGTATCTC
TAAACACTTTACACATCTCATTTCATCCAAGAGTCGGCTAAACCGAAGCTTTGATACCACTAAAT
G
Found at i:14865454 original size:43 final size:41
Alignment explanation
Indices: 14865388--14865549 Score: 139
Period size: 43 Copynumber: 3.8 Consensus size: 41
14865378 AGCTCGTACA
* *
14865388 ATGCCAATGTCCCAGACGTGGTCTTACATGTAACCAAATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGAAACCAAATA-CG
* *
14865431 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATCAAATACG
1 ATGCCA-TGTCCCAGACATGGTCTTACATGAAACCAAATACG
* * *
14865473 ATACCGATGTCCCAGGCATGGTCTTACACAT-AAATCATAAGT-CG
1 ATGCC-ATGTCCCAGACATGGTCTT--ACATGAAACCA-AA-TACG
* * *
14865517 ATGCCAACGTCCCAGACGTGGTCTTACACGAAA
1 ATGCC-ATGTCCCAGACATGGTCTTACATGAAA
14865550 ACACAAATCG
Statistics
Matches: 99, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
42 26 0.26
43 44 0.44
44 28 0.28
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (41 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAACCAAATACG
Found at i:14869223 original size:14 final size:12
Alignment explanation
Indices: 14869193--14869234 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
14869183 TGTATCTACT
14869193 CGTGTGTCTGCC
1 CGTGTGTCTGCC
14869205 CGTGTGTCTGCC
1 CGTGTGTCTGCC
*
14869217 CATGTGTCTGCC
1 CGTGTGTCTGCC
14869229 CGTGTG
1 CGTGTG
14869235 GACAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.02, C:0.31, G:0.33, T:0.33
Consensus pattern (12 bp):
CGTGTGTCTGCC
Found at i:14871599 original size:16 final size:16
Alignment explanation
Indices: 14871586--14871617 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14871576 AGAATGGTCA
14871586 TGGCATAAAATGGTAT
1 TGGCATAAAATGGTAT
14871602 TGGCATAAAATGGTAT
1 TGGCATAAAATGGTAT
14871618 GTGGTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (16 bp):
TGGCATAAAATGGTAT
Found at i:14884599 original size:40 final size:40
Alignment explanation
Indices: 14884555--14884778 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
14884545 AAGTGAATAT
* * * * **
14884555 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
*
14884595 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGATTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
14884635 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
14884675 ATCCGGGTTAAGTCCTGAAGGCATTCGTGCGAATTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
14884715 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
14884754 ATCCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
14884779 TGAACGAGGA
Statistics
Matches: 166, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 35 0.21
40 131 0.79
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:14892610 original size:27 final size:27
Alignment explanation
Indices: 14892457--14892706 Score: 137
Period size: 27 Copynumber: 9.3 Consensus size: 27
14892447 TTAGTTTACC
** ** *
14892457 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTAATTTATA
* * *
14892484 AAATTA-CTAAATACCCTCAA-TTAGAA
1 AAATTACCAAAATACCCTTAATTTA-TA
* * * ** *
14892510 AAATTACGATAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTAATTTATA
* ** *
14892537 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTAATTTATA
* *
14892564 AAATTACCAAAATACCCTTAATTTTTG
1 AAATTACCAAAATACCCTTAATTTATA
* **
14892591 AAATTACTAAAATACCCTTAACCTATA
1 AAATTACCAAAATACCCTTAATTTATA
* * **
14892618 AAATTACTAAAATA-CCTTCGACCTATA
1 AAATTACCAAAATACCCTT-AATTTATA
** ** * *
14892645 AAATTACTGAAATACCCTCGACTTACA
1 AAATTACCAAAATACCCTTAATTTATA
* *
14892672 AAATTACCAAAGTACCCCTAATTTATA
1 AAATTACCAAAATACCCTTAATTTATA
*
14892699 GAATTACC
1 AAATTACC
14892707 GTTTTACCCT
Statistics
Matches: 177, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
25 3 0.02
26 20 0.11
27 149 0.84
28 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAATTTATA
Found at i:14892757 original size:27 final size:27
Alignment explanation
Indices: 14892734--14892868 Score: 191
Period size: 27 Copynumber: 5.0 Consensus size: 27
14892724 CAAAATTATT
*
14892734 GAAATA-CCTCTGTAGGGTAGAATTACT
1 GAAATACCCT-TGTAGGGTAGAATTACC
*
14892761 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
14892788 GAAATACCCTTGTAGGGTCGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
14892815 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
14892842 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
14892869 ATTTTACCCC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 95 0.98
28 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:14893308 original size:22 final size:22
Alignment explanation
Indices: 14893256--14893320 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
14893246 GCCAAGTATT
* * *
14893256 CTGATTATGGCTTTGCGCCAAT
1 CTGATTATGGCTCTGTGCCAAC
*
14893278 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
14893300 CTGATTATGGCTGTGTACCAA
1 CTGATTATGGCTCTGTGCCAA
14893321 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:14893663 original size:6 final size:6
Alignment explanation
Indices: 14893652--14893747 Score: 72
Period size: 6 Copynumber: 15.5 Consensus size: 6
14893642 CCATTCACAA
* * * *
14893652 TCTGAT TCTGAT TCTG-T TACCTGAT ACTGAT TCTAAT TCTG-T CACCTAAT
1 TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT --TCTGAT
*
14893702 TCTGAT TCTGAT TCTGAT TCTG-T CACCTGAT TCTGAT TCTGAT TCT
1 TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT TCT
14893748 CGTTTTGATT
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
5 4 0.06
6 56 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.46
Consensus pattern (6 bp):
TCTGAT
Found at i:14893707 original size:31 final size:31
Alignment explanation
Indices: 14893672--14893747 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
14893662 ATTCTGTTAC
*
14893672 CTGATACTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATT
* *
14893703 CTGATTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATT
14893734 CTGATTCTGATTCT
1 CTGATTCTGATTCT
14893748 CGTTTTGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (31 bp):
CTGATTCTGATTCTAATTCTGTCACCTAATT
Found at i:14893743 original size:25 final size:25
Alignment explanation
Indices: 14893652--14893747 Score: 111
Period size: 25 Copynumber: 3.6 Consensus size: 25
14893642 CCATTCACAA
*
14893652 TCTGATTCTGATTCTGTTACCTGAT
1 TCTGATTCTGATTCTGTCACCTGAT
* *
14893677 ACTGATTCTAATTCTGTCACCTAATTCTGAT
1 TCTGATTCTGATTCTGTCA-C-----CTGAT
14893708 TCTGATTCTGATTCTGTCACCTGAT
1 TCTGATTCTGATTCTGTCACCTGAT
14893733 TCTGATTCTGATTCT
1 TCTGATTCTGATTCT
14893748 CGTTTTGATT
Statistics
Matches: 60, Mismatches: 5, Indels: 12
0.78 0.06 0.16
Matches are distributed among these distances:
25 36 0.60
26 1 0.02
30 1 0.02
31 22 0.37
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.46
Consensus pattern (25 bp):
TCTGATTCTGATTCTGTCACCTGAT
Found at i:14902673 original size:13 final size:13
Alignment explanation
Indices: 14902655--14902681 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14902645 GCTCTATAGG
14902655 GACACGCCCATGT
1 GACACGCCCATGT
14902668 GACACGCCCATGT
1 GACACGCCCATGT
14902681 G
1 G
14902682 CGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:14905858 original size:45 final size:45
Alignment explanation
Indices: 14905837--14906053 Score: 274
Period size: 45 Copynumber: 4.8 Consensus size: 45
14905827 TTCCTTTGAT
* *
14905837 TCGTGATGCCATAACGTCTTTCAG-CTTTGGTCTTACTCATTAGAA
1 TCGTGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCAATAGAA
* * * * *
14905882 TAGTGATGCCATAATGCCTTTTAGTCATGGTCTTACTCGATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
* * *
14905927 TTGTGATGCCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
* ** * * *
14905972 TCATGATGCCATAAATTCTATCAATCATGGTCTCACTCAATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
14906017 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACT
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACT
14906054 TGTTTCTTGT
Statistics
Matches: 147, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 146 0.99
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (45 bp):
TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
Found at i:14908207 original size:21 final size:22
Alignment explanation
Indices: 14908181--14908230 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
14908171 TTTCCAATAC
14908181 CAAATCA-TAGTCGAATCATT-T
1 CAAATCACT-GTCGAATCATTGT
*
14908202 CAAATCACTGTTGAATCATTGT
1 CAAATCACTGTCGAATCATTGT
*
14908224 CGAATCA
1 CAAATCA
14908231 AGTTCATAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (22 bp):
CAAATCACTGTCGAATCATTGT
Found at i:14911446 original size:43 final size:42
Alignment explanation
Indices: 14911354--14911501 Score: 136
Period size: 43 Copynumber: 3.5 Consensus size: 42
14911344 TAGCCCAGAT
* ** ** ** *
14911354 ATGGTCTTACATGTTATCATATATCGATGCCTCTGTCCCCGAT
1 ATGGTCTTACATGTAATCATA-ATAAATGCCAATGTCCCAAAC
* * *
14911397 AGGGTCTTACATGAAATCGAATAAT-GATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATC--ATAATAAATGCCAATGTCCCAAAC
* *
14911440 ATGGTCTTACATGTATTCATAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCATAATA-AATGCCAATGTCCCAAAC
14911483 ATGGTCTTACATGTAATCA
1 ATGGTCTTACATGTAATCA
14911502 CATCTCGATA
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
41 5 0.06
43 77 0.89
44 2 0.02
45 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCATAATAAATGCCAATGTCCCAAAC
Found at i:14911808 original size:21 final size:22
Alignment explanation
Indices: 14911782--14911828 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
14911772 TATATACATT
*
14911782 CAAAATTAATCCATTTAAT-CA
1 CAAAATTAATCAATTTAATCCA
* *
14911803 CAAAATTATTCAATTTCATCCA
1 CAAAATTAATCAATTTAATCCA
14911825 CAAA
1 CAAA
14911829 CACATATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (22 bp):
CAAAATTAATCAATTTAATCCA
Found at i:14918574 original size:47 final size:47
Alignment explanation
Indices: 14918504--14918595 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 47
14918494 TTAATCGATA
*
14918504 AGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTTATCTCGG
1 AGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTCATCTCGG
* * *
14918551 AGTACCTATACCATTG-TTCGTAGCCAAATCAAGGTAACTCATCTC
1 AGTACCTATACCATGGCCT-GTAGCCAAATCAAGATAACTCATCTC
14918596 CAAAATACTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 1 0.03
47 39 0.98
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (47 bp):
AGTACCTATACCATGGCCTGTAGCCAAATCAAGATAACTCATCTCGG
Found at i:14919727 original size:15 final size:15
Alignment explanation
Indices: 14919707--14919737 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14919697 TAGAATGCAA
14919707 CTTTTGCATTTTACG
1 CTTTTGCATTTTACG
14919722 CTTTTGCATTTTACG
1 CTTTTGCATTTTACG
14919737 C
1 C
14919738 GATTTAGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.52
Consensus pattern (15 bp):
CTTTTGCATTTTACG
Found at i:14922141 original size:37 final size:37
Alignment explanation
Indices: 14922091--14922166 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
14922081 CTAGGTATTG
14922091 TTTCTCTTATTGGTTATTATTTAATTATTTTCATAAT
1 TTTCTCTTATTGGTTATTATTTAATTATTTTCATAAT
*
14922128 TTTCTCTTATTGGTTATTATTTAATTATTTTCCTAAT
1 TTTCTCTTATTGGTTATTATTTAATTATTTTCATAAT
14922165 TT
1 TT
14922167 ATTCTCTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.22, C:0.09, G:0.05, T:0.63
Consensus pattern (37 bp):
TTTCTCTTATTGGTTATTATTTAATTATTTTCATAAT
Found at i:14924799 original size:62 final size:62
Alignment explanation
Indices: 14924712--14924829 Score: 202
Period size: 62 Copynumber: 1.9 Consensus size: 62
14924702 TTCATTTGAT
* *
14924712 TAAATCCACACCTGGAATAATGATCTCTTAACACCAAAACTACTCCTCCACTTTCAACGATG
1 TAAACCCACACCTGGAATAAGGATCTCTTAACACCAAAACTACTCCTCCACTTTCAACGATG
14924774 TAAACCCACA-CTCGGAATAAGGATCTCTTAACACCAAAACTACTCCTCCACTTTCA
1 TAAACCCACACCT-GGAATAAGGATCTCTTAACACCAAAACTACTCCTCCACTTTCA
14924830 GTGATATAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
61 2 0.04
62 51 0.96
ACGTcount: A:0.36, C:0.32, G:0.08, T:0.25
Consensus pattern (62 bp):
TAAACCCACACCTGGAATAAGGATCTCTTAACACCAAAACTACTCCTCCACTTTCAACGATG
Found at i:14925669 original size:13 final size:13
Alignment explanation
Indices: 14925653--14925680 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14925643 GGGAAAGTAA
14925653 AGCAAAATATGGG
1 AGCAAAATATGGG
14925666 AGCAAAATATGGG
1 AGCAAAATATGGG
14925679 AG
1 AG
14925681 AATCAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.32, T:0.14
Consensus pattern (13 bp):
AGCAAAATATGGG
Found at i:14927552 original size:17 final size:18
Alignment explanation
Indices: 14927520--14927553 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14927510 TTGTTCCAAA
*
14927520 ACATTATTCATTTTCAAC
1 ACATTATACATTTTCAAC
14927538 ACATTATAC-TTTTCAA
1 ACATTATACATTTTCAA
14927554 TTAATTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (18 bp):
ACATTATACATTTTCAAC
Found at i:14929728 original size:46 final size:46
Alignment explanation
Indices: 14929567--14929784 Score: 170
Period size: 46 Copynumber: 4.7 Consensus size: 46
14929557 CATGTAACCC
* * * * * *
14929567 CCATAAGCGAACTCGGACTCAACTCAATAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACGCTCGCAA
* * * * **
14929613 CCATAAGTGAACTCGGACTCAAATCAACGAGTTCGGATGCCTAGTTA
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACG-CTCGCAA
* * * * **
14929660 -CATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAA
1 CCA--TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACGCTCGCAA
* * *
14929706 CCATAAGTGAACTCGGACTCAACTCAACCAGTTCGGATGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACGCTCGCAA
* * * *
14929752 CCAAAACTAAAATCGGACTCAACTCAACAAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTT
14929785 TGGATGCCTA
Statistics
Matches: 132, Mismatches: 35, Indels: 10
0.75 0.20 0.06
Matches are distributed among these distances:
45 2 0.02
46 97 0.73
47 31 0.23
48 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACGCTCGCAA
Found at i:14929733 original size:93 final size:93
Alignment explanation
Indices: 14929574--14929745 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
14929564 CCCCCATAAG
* * * * *
14929574 CGAACTCGGACTCAACTCAATAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAATCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCAACCATAAGTGAACTCGGACTCAAATCA
*
14929639 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACCAGTTCGGATGCCTAGTTACATTTCA
* * *
14929667 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAACCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCAACCATAAGTGAACTCGGACTCAAATCA
14929732 ACCAGTTCGGATGC
66 ACCAGTTCGGATGC
14929746 TCGCATCCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCAACCATAAGTGAACTCGGACTCAAATCA
ACCAGTTCGGATGCCTAGTTACATTTCA
Found at i:14955001 original size:47 final size:47
Alignment explanation
Indices: 14954942--14955038 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
14954932 CCTAGCCTCT
* *
14954942 TTTAGTAACTGGGGCA-AAGCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC
*
14954989 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
14955036 TTT
1 TTT
14955039 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 41 0.89
48 5 0.11
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:14955040 original size:24 final size:24
Alignment explanation
Indices: 14954921--14955039 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
14954911 GCTTTATCAT
*
14954921 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
14954946 GTAACTGGGGCA-AAGCCTTTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
14954970 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
14954993 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
14955017 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
14955040 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 23 0.27
24 50 0.59
25 12 0.14
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:14955111 original size:9 final size:9
Alignment explanation
Indices: 14955097--14955153 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
14955087 ATCTCGTGTG
14955097 CATATCATA
1 CATATCATA
*
14955106 CATATCATGTG
1 CATATCA--TA
14955117 CATATCATA
1 CATATCATA
* *
14955126 CATGTCATGTG
1 CATATCA--TA
14955137 CATATCATA
1 CATATCATA
14955146 CATATCAT
1 CATATCAT
14955154 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:14955116 original size:20 final size:20
Alignment explanation
Indices: 14955093--14955155 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
14955083 GAACATCTCG
14955093 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
14955113 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
14955133 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
14955153 TGT
1 TGT
14955156 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:14962064 original size:17 final size:17
Alignment explanation
Indices: 14962042--14962076 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14962032 GGGGTGTTAC
14962042 ATCTTAGCAGTTTGCAA
1 ATCTTAGCAGTTTGCAA
*
14962059 ATCTTAGTAGTTTGCAA
1 ATCTTAGCAGTTTGCAA
14962076 A
1 A
14962077 CTTTTTACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (17 bp):
ATCTTAGCAGTTTGCAA
Found at i:14964383 original size:24 final size:24
Alignment explanation
Indices: 14964351--14964396 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
14964341 CATGTTTTAT
14964351 ACTTAGGTGAGCATAGAAGAGCGA
1 ACTTAGGTGAGCATAGAAGAGCGA
* *
14964375 ACTTAGGTGAGCGTAGGAGAGC
1 ACTTAGGTGAGCATAGAAGAGC
14964397 AAAAGGAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.37, T:0.17
Consensus pattern (24 bp):
ACTTAGGTGAGCATAGAAGAGCGA
Found at i:14981471 original size:22 final size:22
Alignment explanation
Indices: 14981443--14981517 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
14981433 TTCCACATCC
14981443 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
14981465 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
14981489 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
14981512 ATCACA
1 ATCACA
14981518 CATACACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:14981478 original size:47 final size:47
Alignment explanation
Indices: 14981415--14981622 Score: 303
Period size: 47 Copynumber: 4.4 Consensus size: 47
14981405 CCCTTCGGGA
* * *
14981415 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14981462 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
14981509 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
14981556 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
14981603 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
14981623 GTACATCAAT
Statistics
Matches: 150, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.01
47 148 0.99
48 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:15007326 original size:30 final size:31
Alignment explanation
Indices: 15007250--15007332 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
15007240 TCAGTCTCGA
15007250 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
15007280 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
15007311 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
15007333 ACTGTAAGCG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:15007566 original size:24 final size:25
Alignment explanation
Indices: 15007539--15007610 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
15007529 ATGGAGGCCT
* *
15007539 AGCCTCTTTTAAT-AATTGGGGCAA
1 AGCCTCTTTTAATAAACTGAGGCAA
* *
15007563 AGCCTTTTTTGATAAACTGAGGCAA
1 AGCCTCTTTTAATAAACTGAGGCAA
*
15007588 AGCC-CTTTTCAGTAAACTGAGGC
1 AGCCTCTTTT-AATAAACTGAGGC
15007611 TTAGCCCTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
AGCCTCTTTTAATAAACTGAGGCAA
Found at i:15007591 original size:25 final size:25
Alignment explanation
Indices: 15007558--15007621 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
15007548 TAATAATTGG
**
15007558 GGCAAAG-CCTTTTTTGATAAACTGA
1 GGCAAAGCCCTTTTCAG-TAAACTGA
15007583 GGCAAAGCCCTTTTCAGTAAACTGA
1 GGCAAAGCCCTTTTCAGTAAACTGA
**
15007608 GGCTTAGCCCTTTT
1 GGCAAAGCCCTTTT
15007622 AGCACTTCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 27 0.79
26 7 0.21
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GGCAAAGCCCTTTTCAGTAAACTGA
Found at i:15007854 original size:27 final size:27
Alignment explanation
Indices: 15007824--15008023 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
15007814 GGGGCAAAAT
* * * *
15007824 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
15007851 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
15007878 AATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
15007905 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
15007932 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
15007959 GGTAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
15007986 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
15008013 GATAATTCTAC
1 GGTAATTCTAC
15008024 AAATCGAGAG
Statistics
Matches: 148, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:15008037 original size:81 final size:81
Alignment explanation
Indices: 15007853--15008046 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 81
15007843 GGTATCTCGG
** * * * *
15007853 TAATTCTACCCTATAGGGGTATTTCAATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACAATACAGGAGTATTTCGATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
15007918 TACAGGGGCATTTCAA
66 TACAGGGGCATTTCAA
** * * *
15007934 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAC-AGGGTTATTTTGGTAATTCTACC
1 TAATTCTACAATACAGGAGTATTTCGATAATTCTACCCTACAAGGG-TATTTCGGTAATTCTACC
* *
15007998 CTACAGGGGTATTTCGA
65 CTACAGGGGCATTTCAA
15008015 TAATTCTACAA-ATC-GAGAGTATTTCGATAATT
1 TAATTCTACAATA-CAG-GAGTATTTCGATAATT
15008047 TCACAAATCA
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
80 6 0.06
81 93 0.94
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (81 bp):
TAATTCTACAATACAGGAGTATTTCGATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
TACAGGGGCATTTCAA
Found at i:15008059 original size:81 final size:80
Alignment explanation
Indices: 15007853--15008073 Score: 198
Period size: 81 Copynumber: 2.7 Consensus size: 80
15007843 GGTATCTCGG
** * * * * ** *
15007853 TAATTCTACCCTATAGGGGTATTTCAATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACAATACAGGAGTATTTCGATAATTCTACAATAC-AGGGTATTTTGGTAATTCTACCC
15007918 TACAGGGGCATTTCAA
65 TACAGGGGCATTTCAA
** * * **
15007934 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTGGTAATTCTACCC
1 TAATTCTACAATACAGGAGTATTTCGATAATTCTACAATACAGGG-TATTTTGGTAATTCTACCC
* *
15007999 TACAGGGGTATTTCGA
65 TACAGGGGCATTTCAA
15008015 TAATTCTACAA-ATC-GAGAGTATTTCGATAATT-TCACAA-ATCAGGGGTATTTTGGTAATT
1 TAATTCTACAATA-CAG-GAGTATTTCGATAATTCT-ACAATA-CA-GGGTATTTTGGTAATT
15008074 TTACAAGCTA
Statistics
Matches: 121, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
80 8 0.07
81 110 0.91
82 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (80 bp):
TAATTCTACAATACAGGAGTATTTCGATAATTCTACAATACAGGGTATTTTGGTAATTCTACCCT
ACAGGGGCATTTCAA
Found at i:15008089 original size:27 final size:26
Alignment explanation
Indices: 15007975--15008210 Score: 184
Period size: 27 Copynumber: 8.7 Consensus size: 26
15007965 TCTACCCTAC
* **
15007975 AGGGTTATTTTGGTAATTCTACCCTACA
1 AGGG-TATTTTGGTAATTTTA-CAAACA
* * * * *
15008003 GGGGTATTTCGATAATTCTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAA-CA
* * * *
15008030 AGAGTATTTCGATAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAA-CA
* *
15008057 GGGGTATTTTGGTAATTTTACAAGCTA
1 AGGGTATTTTGGTAATTTTACAAAC-A
* *
15008084 AAGGTATTTTGGTAATTTTACAAGCTA
1 AGGGTATTTTGGTAATTTTACAAAC-A
* *
15008111 GGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACA
* *
15008137 AGGGATATTTTAGTAATTTTACAAACC
1 AGGG-TATTTTGGTAATTTTACAAACA
**
15008164 AGGGTTATTTTGGTAATTTTGTAAACCA
1 AGGG-TATTTTGGTAATTTTACAAA-CA
*
15008192 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTT
15008211 GTAAATCGAG
Statistics
Matches: 173, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
26 6 0.03
27 159 0.92
28 8 0.05
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACA
Found at i:15008215 original size:27 final size:27
Alignment explanation
Indices: 15008004--15008210 Score: 193
Period size: 27 Copynumber: 7.7 Consensus size: 27
15007994 TACCCTACAG
* * * * *
15008004 GGGTATTTCGATAATTCTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * * *
15008031 GAGTATTTCGATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
15008058 GGGTATTTTGGTAATTTTACAAGCTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
15008085 AGGTATTTTGGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
15008112 GGGTATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
*
15008138 GGGATATTTTAGTAATTTTACAAACC-A
1 GGG-TATTTTGGTAATTTTACAAACCAA
**
15008165 GGGTTATTTTGGTAATTTTGTAAACCAA
1 GGG-TATTTTGGTAATTTTACAAACCAA
*
15008193 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
15008211 GTAAATCGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 146 0.95
28 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:15008531 original size:27 final size:27
Alignment explanation
Indices: 15008203--15008520 Score: 424
Period size: 27 Copynumber: 11.8 Consensus size: 27
15008193 GGGTATTTTA
* * *
15008203 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
15008230 ATAATTCTGTAAATCGATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
15008257 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
15008284 GTAATTTTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
15008311 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
15008338 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
15008365 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
15008392 GTAATTCTGTAAATCGAAGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
15008419 GTAATTCTGTAAATCGAGGATAAAGA-G
1 GTAATTCTATAAATCGAGGGTAAA-ATG
*
15008446 GTAATTCTATAAATC-AAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
15008472 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
15008499 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
15008521 CTTTGGTAAT
Statistics
Matches: 262, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
25 1 0.00
26 22 0.08
27 238 0.91
28 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:15011881 original size:15 final size:15
Alignment explanation
Indices: 15011857--15011888 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15011847 TATGCATGCA
*
15011857 AAATATAAAAGACAT
1 AAATACAAAAGACAT
15011872 AAATACAAAAGACAT
1 AAATACAAAAGACAT
15011887 AA
1 AA
15011889 TAATGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:15018186 original size:19 final size:19
Alignment explanation
Indices: 15018162--15018198 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15018152 TGAAAAAAAA
15018162 ATCATTTTTAAAATTTTTT
1 ATCATTTTTAAAATTTTTT
*
15018181 ATCATTTTTATAATTTTT
1 ATCATTTTTAAAATTTTT
15018199 GGAACTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
ATCATTTTTAAAATTTTTT
Found at i:15024479 original size:21 final size:20
Alignment explanation
Indices: 15024450--15024489 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
15024440 CATGTATTTT
15024450 AATGATTGATGATAGATTATG
1 AATGATTGATGATA-ATTATG
*
15024471 AATGTTTGATGATAATTAT
1 AATGATTGATGATAATTAT
15024490 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAATTATG
Found at i:15024497 original size:20 final size:21
Alignment explanation
Indices: 15024455--15024497 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
15024445 ATTTTAATGA
*
15024455 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
15024476 TTGATGATA-ATTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
15024496 TT
1 TT
15024498 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 10 0.50
21 9 0.45
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:15032846 original size:22 final size:20
Alignment explanation
Indices: 15032796--15032847 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
15032786 TATAATTAAC
15032796 ATTTTTATATAATTTTTTAG
1 ATTTTTATATAATTTTTTAG
* *
15032816 AATTATATATATTATTTTTGT-G
1 -ATT-TTTATATAATTTTT-TAG
15032838 ATTTTTATAT
1 ATTTTTATAT
15032848 TTTTTTCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 6 0.23
21 6 0.23
22 13 0.50
23 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (20 bp):
ATTTTTATATAATTTTTTAG
Found at i:15035613 original size:18 final size:18
Alignment explanation
Indices: 15035573--15035607 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15035563 AAGCCGGAGG
* *
15035573 AGGAGCATGTTCATGTGA
1 AGGAACATGTTCAGGTGA
15035591 AGGAACATGTTCAGGTG
1 AGGAACATGTTCAGGTG
15035608 CCGGAATGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (18 bp):
AGGAACATGTTCAGGTGA
Found at i:15036944 original size:17 final size:17
Alignment explanation
Indices: 15036922--15036956 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
15036912 ACGGTGCAGT
15036922 GCTCTTAAAAACCTAGA
1 GCTCTTAAAAACCTAGA
*
15036939 GCTCTTAAACACCTAGA
1 GCTCTTAAAAACCTAGA
15036956 G
1 G
15036957 GTATCGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (17 bp):
GCTCTTAAAAACCTAGA
Found at i:15055486 original size:546 final size:542
Alignment explanation
Indices: 15054454--15055534 Score: 1684
Period size: 546 Copynumber: 2.0 Consensus size: 542
15054444 GTTCGTGTTA
* * * * *
15054454 TTTCGTGATAGGTTTTAAATATTTATAATTACTCGTTCTTAAACTAACTATTATTGTGATGTAGG
1 TTTCGTGATAGGTCTTAAATATTTATAATTACTCATTCTTAAACCAACTATTATCGCGATGTAGG
* * * **
15054519 CAAGTGTATCTATCGAACAGTAGTATAGTTTTAGCAAGACTTAATTGTCGAACCCAAAGGAACTA
66 CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACCGAATTGTCGAACCCAAAGGAACTA
*
15054584 AAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAACGGGGTTTTGTTTTAACTA
131 AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAACGGGGTTTTGTTTTAACTA
* * *
15054649 ACTAATTATCTAAACTAAGGATTCACAGAAAGTAGAATTGGGGAATTACTTTTGGAAAAACGATT
196 ACTAATTATCTAAACTAAGAATGCACAGAAAGAAGAATTGGGGAATTACTTTTGGAAAAACGATT
* * * *
15054714 GATTTAAAACAATACCTAAGGAAGAATCCACCTAGACTTCACTTGTTATTCTGACTCCGAATCAG
261 GACTTAAAACAATACCTAAGGAAAAATCCACCCAG----CACTTGTTATTCTGACTCCGAACCAG
* * *
15054779 ATGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAATTTATGTTATTATCTCTATTCAAGAC
322 ACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCAAGAC
* *
15054844 TAATAACGTCTAATCCCTAGATTGAATAACTGAGACTTTTCTCTAATTAACACTCTAGGGTTGCA
387 TAATAACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGGTTGCA
** *
15054909 TTAACTCGATCTATGGATCCCTTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTAT
452 TTAACAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTAT
15054974 GTCTAGGAGTGCAATTGATCGCGAGG
517 GTCTAGGAGTGCAATTGATCGCGAGG
*
15055000 TTTCGTGATAGGTCTTAAATATTTATAATTACTCATTCTTGAACCAACTATTATCGCGATGTAGG
1 TTTCGTGATAGGTCTTAAATATTTATAATTACTCATTCTTAAACCAACTATTATCGCGATGTAGG
*
15055065 CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCAAAGGAACTA
66 CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACCGAATTGTCGAACCCAAAGGAACTA
*
15055130 AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTATTTGTTTTA
131 AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAACGGGG---T-TTTGTTTTA
*
15055195 A-TGAACTAATTATCTAAACTAAGAATGCACAGAGAA-AAGAATTGGGGAATTGCTTTTGGGAAA
192 ACT-AACTAATTATCTAAACTAAGAATGCACAGA-AAGAAGAATTGGGGAATTACTTTT-GGAAA
* * * * *
15055258 ATCGATTGACTTGAGATAATACCTAAGGAAAAATCCACCCAG-ACTTGTTATTCTGGCTCCGAAC
254 AACGATTGACTTAAAACAATACCTAAGGAAAAATCCACCCAGCACTTGTTATTCTGACTCCGAAC
* *
15055322 CGGACGATTTATTC-TTTCAACTTGTTCCGTAGAGATCTCTAAGTTATGTTATTATCCCTATTCA
319 CAGACGATTTATTCATTT-AACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
15055386 AGACTAATAACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGGT
383 AGACTAATAACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGGT
15055451 TGCATTAACAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACC
448 TGCATTAACAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACC
*
15055516 CTATGTCTAGGCGTGCAAT
513 CTATGTCTAGGAGTGCAAT
15055535 CAACTCCACT
Statistics
Matches: 489, Mismatches: 38, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
545 3 0.01
546 385 0.79
549 2 0.00
550 57 0.12
551 42 0.09
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (542 bp):
TTTCGTGATAGGTCTTAAATATTTATAATTACTCATTCTTAAACCAACTATTATCGCGATGTAGG
CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACCGAATTGTCGAACCCAAAGGAACTA
AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAACGGGGTTTTGTTTTAACTA
ACTAATTATCTAAACTAAGAATGCACAGAAAGAAGAATTGGGGAATTACTTTTGGAAAAACGATT
GACTTAAAACAATACCTAAGGAAAAATCCACCCAGCACTTGTTATTCTGACTCCGAACCAGACGA
TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAAT
AACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGGTTGCATTAA
CAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATGTCT
AGGAGTGCAATTGATCGCGAGG
Found at i:15058012 original size:5 final size:6
Alignment explanation
Indices: 15057994--15058019 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
15057984 TAAATCTTCT
15057994 AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
15058020 GTAGTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:15070067 original size:20 final size:20
Alignment explanation
Indices: 15070042--15070082 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
15070032 TCTACTTGAT
15070042 TAGAGAGCATGGTGACCGAA
1 TAGAGAGCATGGTGACCGAA
15070062 TAGAGAGCATGGTGACCGAA
1 TAGAGAGCATGGTGACCGAA
15070082 T
1 T
15070083 CGACGTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.15, G:0.34, T:0.17
Consensus pattern (20 bp):
TAGAGAGCATGGTGACCGAA
Found at i:15071558 original size:79 final size:81
Alignment explanation
Indices: 15071458--15071642 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
15071448 GCTCCTCGTT
* *
15071458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGACC
* *
15071520 TGGATTTAGTAAC-TCGCA
64 -GGATATAGTAACTTAGCA
* *
15071538 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
* *
15071602 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
15071618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15071643 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.58
80 36 0.39
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
ATATAGTAACTTAGCA
Found at i:15071642 original size:40 final size:40
Alignment explanation
Indices: 15071458--15071642 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
15071448 GCTCCTCGTT
* *
15071458 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
15071498 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
15071538 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
15071577 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
15071618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15071643 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:15076895 original size:44 final size:44
Alignment explanation
Indices: 15076712--15076901 Score: 109
Period size: 44 Copynumber: 4.3 Consensus size: 44
15076702 AAGTTCCGGC
* * * *
15076712 GGAGTATATCGAAGCTACAAATCTCTTCTCCCTGAAATTATATT
1 GGAGTAGATCGAAGCTACAAATCTCTTTTCCCTGAAATTACAGT
* * * * * *
15076756 GGAGTAAATCGAAGTTACAGA-C-CTTATCTCCTTGAAGTTGCAGT
1 GGAGTAGATCGAAGCTACAAATCTCTT-T-TCCCTGAAATTACAGT
* * ** * * * * *
15076800 GG-GTCAGGTTGAAATTACTAAT-TCTTATCTCCTGAAGTTCCAGC
1 GGAGT-AGATCGAAGCTACAAATCTCTTTTC-CCTGAAATTACAGT
** *
15076844 AAAGTAGATCGAAGCTACAAATCTCTTTTCCCTGAAATTACATT
1 GGAGTAGATCGAAGCTACAAATCTCTTTTCCCTGAAATTACAGT
*
15076888 GGAGTAGATTGAAG
1 GGAGTAGATCGAAG
15076902 TCACAGGCCC
Statistics
Matches: 104, Mismatches: 34, Indels: 16
0.68 0.22 0.10
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 85 0.82
45 11 0.11
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (44 bp):
GGAGTAGATCGAAGCTACAAATCTCTTTTCCCTGAAATTACAGT
Found at i:15076924 original size:132 final size:132
Alignment explanation
Indices: 15076638--15076931 Score: 394
Period size: 132 Copynumber: 2.2 Consensus size: 132
15076628 GATAAAAATA
* *
15076638 CACAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTTA
1 CACAGACCCTATCT-CCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGA
* ** * *
15076703 AGTTCCGGCGGAGTATATCGAAGCTACAAATCTCTTCTCCCTGAAATTATATTGGAGTAAATCGA
65 AGTTCCAGCAAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGTAAATCGA
15076768 AGT
130 AGT
* * *
15076771 TACAGACCTTATCTCCTTGAAGTTGCAGTGG-GTCAGGTTGAAATTACTAATTCTTATCTCC-TG
1 CACAGACCCTATCTCC-TGAAGTTGCAGTGGAG-CAGGTTGAAATTACCAATTCTTATCTCCTTG
* * *
15076834 AAGTTCCAGCAAAGTAGATCGAAGCTACAAATCTCTTTTCCCTGAAATTACATTGGAGTAGATTG
64 AAGTTCCAGCAAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGTAAATCG
15076899 AAGT
129 AAGT
* * *
15076903 CACAGGCCCTATACTTCTGAAGTTACAGT
1 CACAGACCCTAT-CTCCTGAAGTTGCAGT
15076932 AGATTAGTTT
Statistics
Matches: 142, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
132 85 0.60
133 57 0.40
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (132 bp):
CACAGACCCTATCTCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAA
GTTCCAGCAAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGTAAATCGAA
GT
Found at i:15077570 original size:29 final size:29
Alignment explanation
Indices: 15077528--15077584 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
15077518 CAGACTTAGC
15077528 AATAAAAAAACAGAAAAGAAATTGAAAGT
1 AATAAAAAAACAGAAAAGAAATTGAAAGT
15077557 AATAAAAAAACAGAAAAGAAATTGAAAG
1 AATAAAAAAACAGAAAAGAAATTGAAAG
15077585 AGGTGATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.70, C:0.04, G:0.14, T:0.12
Consensus pattern (29 bp):
AATAAAAAAACAGAAAAGAAATTGAAAGT
Found at i:15079284 original size:14 final size:15
Alignment explanation
Indices: 15079265--15079297 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15079255 TTAAGAAATC
*
15079265 AAAATACAAC-TTTT
1 AAAATAAAACATTTT
15079279 AAAATAAAACATTTT
1 AAAATAAAACATTTT
15079294 AAAA
1 AAAA
15079298 GGCTAGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATAAAACATTTT
Found at i:15082550 original size:9 final size:9
Alignment explanation
Indices: 15082536--15082577 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
15082526 TTTTGAGTTT
*
15082536 GAATAATTC
1 GAATAACTC
*
15082545 GAATAACTT
1 GAATAACTC
15082554 GAATAACTC
1 GAATAACTC
15082563 GAATAACTC
1 GAATAACTC
15082572 GAATAA
1 GAATAA
15082578 ACTAAATACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (9 bp):
GAATAACTC
Found at i:15083121 original size:18 final size:18
Alignment explanation
Indices: 15083084--15083121 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
15083074 AAAAAATCAC
*
15083084 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
15083102 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
15083120 AT
1 AT
15083122 AGTGACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:15083158 original size:8 final size:8
Alignment explanation
Indices: 15083147--15083185 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
15083137 AAAATAATTG
*
15083147 AAGCAACT
1 AAGCAAAT
15083155 AAGCAAAT
1 AAGCAAAT
*
15083163 AAGTAAAT
1 AAGCAAAT
15083171 AAGCAAAT
1 AAGCAAAT
*
15083179 AATCAAA
1 AAGCAAA
15083186 ATAAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.62, C:0.13, G:0.10, T:0.15
Consensus pattern (8 bp):
AAGCAAAT
Found at i:15089043 original size:26 final size:25
Alignment explanation
Indices: 15088984--15089043 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
15088974 ATATTCTATC
*
15088984 TAGTTTTA--ATTTTAATCCTTACT
1 TAGTTTTATTATTTTAATCCTTAAT
15089007 TA-TTATCTATTATTTTAATCCTTAAT
1 TAGTT-T-TATTATTTTAATCCTTAAT
15089033 TCAGTTTTATT
1 T-AGTTTTATT
15089044 CCTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 2 0.07
23 3 0.10
24 2 0.07
26 19 0.63
27 2 0.07
28 2 0.07
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (25 bp):
TAGTTTTATTATTTTAATCCTTAAT
Found at i:15089289 original size:17 final size:18
Alignment explanation
Indices: 15089257--15089293 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
15089247 TTTACATCTC
*
15089257 TTTCATATATTATTATAT
1 TTTCACATATTATTATAT
15089275 TTTCACATA-TATTATAT
1 TTTCACATATTATTATAT
15089292 TT
1 TT
15089294 ATTAATTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTCACATATTATTATAT
Found at i:15089413 original size:21 final size:20
Alignment explanation
Indices: 15089389--15089438 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
15089379 TATATAATCT
*
15089389 TTATTATGTTTTATTTTTATA
1 TTATTATGTTGT-TTTTTATA
*
15089410 TTATT-TATTGTTTTTTATA
1 TTATTATGTTGTTTTTTATA
15089429 -TATATATGTT
1 TTAT-TATGTT
15089439 ACGTATATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 3 0.12
19 9 0.38
20 7 0.29
21 5 0.21
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (20 bp):
TTATTATGTTGTTTTTTATA
Found at i:15089434 original size:25 final size:24
Alignment explanation
Indices: 15089333--15089435 Score: 66
Period size: 25 Copynumber: 4.2 Consensus size: 24
15089323 TACGTTACTT
*
15089333 TATATTATATCTATTAT-TTTTCTTA
1 TATATTAT-T-TATTATGTTTTATTA
* * **
15089358 TATGTT-TATATTACATTTTATTA
1 TATATTATTTATTATGTTTTATTA
* * *
15089381 TATAATCTTTATTATGTTTTATTTT
1 TATATTATTTATTATGTTTTA-TTA
* *
15089406 TATATTATTTATTGTTTTTTATATA
1 TATATTATTTATTATGTTTTAT-TA
15089431 TATAT
1 TATAT
15089436 GTTACGTATA
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
22 5 0.08
23 11 0.19
24 13 0.22
25 30 0.51
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (24 bp):
TATATTATTTATTATGTTTTATTA
Found at i:15089501 original size:17 final size:15
Alignment explanation
Indices: 15089459--15089502 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
15089449 TGTATTGCAA
15089459 ATTATATTATTTTAT
1 ATTATATTATTTTAT
*
15089474 ATCTCTATTATTTTAT
1 AT-TATATTATTTTAT
15089490 GATTATTATTATT
1 -ATTA-TATTATT
15089503 AAATCATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 2 0.08
16 13 0.54
17 9 0.38
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (15 bp):
ATTATATTATTTTAT
Found at i:15089988 original size:16 final size:17
Alignment explanation
Indices: 15089967--15090000 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15089957 ATTTTTTTTG
*
15089967 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
15089983 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
15090000 C
1 C
15090001 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:15095258 original size:7 final size:7
Alignment explanation
Indices: 15095242--15095299 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
15095232 CTTCTATTTC
15095242 AAAAAA-
1 AAAAAAG
15095248 AAAAAAG
1 AAAAAAG
15095255 -AAAAAG
1 AAAAAAG
15095261 --AAAAG
1 AAAAAAG
15095266 AAAAAGAG
1 AAAAA-AG
15095274 AAAAAAG
1 AAAAAAG
* **
15095281 TAATGAG
1 AAAAAAG
15095288 AAAAAAG
1 AAAAAAG
15095295 AAAAA
1 AAAAA
15095300 GATGGAGAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
5 5 0.12
6 12 0.29
7 18 0.43
8 7 0.17
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:15095269 original size:17 final size:18
Alignment explanation
Indices: 15095244--15095277 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15095234 TCTATTTCAA
15095244 AAAAAAAAAAGA-AAAAG
1 AAAAAAAAAAGAGAAAAG
*
15095261 AAAAGAAAAAGAGAAAA
1 AAAAAAAAAAGAGAAAA
15095278 AAGTAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAG
Found at i:15096206 original size:44 final size:44
Alignment explanation
Indices: 15096155--15096348 Score: 180
Period size: 44 Copynumber: 4.4 Consensus size: 44
15096145 TGGACAATGT
* *
15096155 AGATCAAAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAAC
1 AGATCGAAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGGAAC
* ** * * * * *
15096199 AGATCAAAGATAGTAGATCTGACATTCCTGTGTTTACAGCGAAGC
1 AGATCGAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAA-C
* **
15096244 AGATTGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAAC
1 AGATCGAAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAAC
* *
15096287 A-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
*
15096331 AGATCGAAGATAGCAGAT
1 AGATCGAAGATAACAGAT
15096349 CTAACCTTCA
Statistics
Matches: 123, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.02
43 13 0.11
44 93 0.76
45 14 0.11
46 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATCGAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
Found at i:15096548 original size:119 final size:119
Alignment explanation
Indices: 15096340--15096933 Score: 1008
Period size: 119 Copynumber: 5.0 Consensus size: 119
15096330 CAGATCGAAG
15096340 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15096405 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
15096459 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15096524 TTACAAGGAATAAATCGAGGACATAGCAGATTTGACTCTCAGGCGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
15096578 ATAGTAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATAATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
15096643 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
15096697 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15096762 TTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
15096816 ATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
15096881 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
15096934 CAGACTCAAG
Statistics
Matches: 447, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 447 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:15096996 original size:83 final size:83
Alignment explanation
Indices: 15096857--15097206 Score: 549
Period size: 83 Copynumber: 4.2 Consensus size: 83
15096847 GAAGCAGATC
15096857 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
15096922 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
15096940 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAGGATATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
15097005 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
15097023 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAGCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
15097088 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * * * *
15097106 CAAGATGGTTTAGGCATCCTTGTGCTTACAAAGGAAAAAAACAAGGACGTAGCAGATATGATTCT
1 CAAGATGGTTT-GGCATCCTTGTGCTTAC-AAGGAACAAATCGAGGACATTGCAGATATGACTCT
* *
15097171 CAAAAGTTCTCAAATAGA-T
64 CAAATGTTCTCAAACAGACT
*
15097190 CAAGATGATTTGGCATC
1 CAAGATGGTTTGGCATC
15097207 TCTACAAATC
Statistics
Matches: 248, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
83 176 0.71
84 28 0.11
85 44 0.18
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:15098828 original size:26 final size:25
Alignment explanation
Indices: 15098769--15098828 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
15098759 ATATTCTATC
*
15098769 TAGTTTTA--ATTTTAATCCTTACT
1 TAGTTTTATTATTTTAATCCTTAAT
15098792 TA-TTATCTATTATTTTAATCCTTAAT
1 TAGTT-T-TATTATTTTAATCCTTAAT
15098818 TCAGTTTTATT
1 T-AGTTTTATT
15098829 CCTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 2 0.07
23 3 0.10
24 2 0.07
26 19 0.63
27 2 0.07
28 2 0.07
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (25 bp):
TAGTTTTATTATTTTAATCCTTAAT
Found at i:15099082 original size:17 final size:18
Alignment explanation
Indices: 15099050--15099086 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
15099040 TTTACATCTC
*
15099050 TTTCATATATTATTATAT
1 TTTCACATATTATTATAT
15099068 TTTCACATA-TATTATAT
1 TTTCACATATTATTATAT
15099085 TT
1 TT
15099087 ATTAATTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTCACATATTATTATAT
Found at i:15099209 original size:18 final size:18
Alignment explanation
Indices: 15099186--15099224 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15099176 ATATAATCTT
15099186 TATTATGTT-TTATTTTTA
1 TATTAT-TTATTATTTTTA
*
15099204 TATTATTTATTGTTTTTA
1 TATTATTTATTATTTTTA
15099222 TAT
1 TAT
15099225 ATATATGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TATTATTTATTATTTTTA
Done.