Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 51 of 373
Found at i:15099229 original size:24 final size:24
Alignment explanation
Indices: 15099129--15099230 Score: 66
Period size: 24 Copynumber: 4.2 Consensus size: 24
15099119 TACGTTACTT
*
15099129 TATATTATATCTATTAT-TTTTCTTA
1 TATATTAT-T-TATTATGTTTTATTA
* * **
15099154 TATGTT-TATATTACATTTTATTA
1 TATATTATTTATTATGTTTTATTA
* * *
15099177 TATAATCTTTATTATGTTTTATTTT
1 TATATTATTTATTATGTTTTA-TTA
*
15099202 TATATTATTTATTGT-TTTTATATA
1 TATATTATTTATTATGTTTTAT-TA
15099226 TATAT
1 TATAT
15099231 GTTACGTATA
Statistics
Matches: 59, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
22 5 0.08
23 12 0.20
24 23 0.39
25 19 0.32
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (24 bp):
TATATTATTTATTATGTTTTATTA
Found at i:15099277 original size:16 final size:16
Alignment explanation
Indices: 15099254--15099297 Score: 63
Period size: 16 Copynumber: 2.7 Consensus size: 16
15099244 TGTATCGCAA
15099254 ATTATATTATTTTAT-
1 ATTATATTATTTTATG
15099269 ATCTATATTATTTTATG
1 AT-TATATTATTTTATG
15099286 ATTATTATTATT
1 ATTA-TATTATT
15099298 AAATCATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.08
16 15 0.58
17 9 0.35
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (16 bp):
ATTATATTATTTTATG
Found at i:15099780 original size:16 final size:17
Alignment explanation
Indices: 15099759--15099792 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15099749 ATTTTTTTTG
*
15099759 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
15099775 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
15099792 C
1 C
15099793 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:15102452 original size:47 final size:47
Alignment explanation
Indices: 15102383--15102476 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
15102373 AGTATTAAAG
15102383 ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
1 ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
*
15102430 ACAAAAGCTTAGCCATTTTCGCATGGCTTATATACACAACCAAAATC
1 ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
15102477 CAGCATTTTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (47 bp):
ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
Found at i:15105474 original size:19 final size:19
Alignment explanation
Indices: 15105450--15105528 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
15105440 AATCTTTAAG
*
15105450 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
15105469 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15105488 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15105505 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
15105526 GAT
1 GAT
15105529 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15105480 original size:36 final size:36
Alignment explanation
Indices: 15105440--15105527 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 36
15105430 ATGGAAATAT
*
15105440 AATCTTTAAGGATATG-CAATTTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
15105476 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
15105512 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
15105528 TCTTGTAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 28 0.62
37 1 0.02
38 7 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:15105486 original size:14 final size:15
Alignment explanation
Indices: 15105469--15105506 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
15105459 TTTTAGATAT
15105469 GATATG-CAATCTTA
1 GATATGACAATCTTA
15105483 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
15105500 GATATGA
1 GATATGA
15105507 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:15110498 original size:37 final size:37
Alignment explanation
Indices: 15110442--15110544 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
15110432 CGAATAGTCC
*
15110442 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
15110479 CCACACGTAGTCATTGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
15110516 CCACACGTAGTCATCGGGTCTTCCCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
15110545 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:15110746 original size:48 final size:48
Alignment explanation
Indices: 15110685--15110917 Score: 439
Period size: 48 Copynumber: 4.9 Consensus size: 48
15110675 ATATACACAC
*
15110685 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15110733 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15110781 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15110829 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15110877 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
15110918 CACATATATA
Statistics
Matches: 181, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 181 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:15114745 original size:40 final size:40
Alignment explanation
Indices: 15114346--15114744 Score: 699
Period size: 40 Copynumber: 10.0 Consensus size: 40
15114336 GAATGCACAT
* * *
15114346 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
15114386 CACCAGTACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
15114426 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
15114466 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
15114506 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
15114546 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
15114586 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
15114626 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
15114666 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
15114706 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
15114745 TAACTCTCAA
Statistics
Matches: 343, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 343 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:15116083 original size:37 final size:37
Alignment explanation
Indices: 15116027--15116129 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
15116017 CGAATAGTCC
*
15116027 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
15116064 CCACACGTAGTGATTGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
15116101 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
15116130 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:15116331 original size:48 final size:48
Alignment explanation
Indices: 15116270--15116829 Score: 976
Period size: 48 Copynumber: 11.9 Consensus size: 48
15116260 ATATGCACAC
*
15116270 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116318 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116366 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116414 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15116462 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15116509 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15116557 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116605 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116653 -T-TC-TATATATTTCACACTAGCCATTCGGCTTTA-C-CA-ATA-AT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116694 AT-TCATACATATTTCACACTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15116741 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
15116789 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
15116830 CACATATATA
Statistics
Matches: 489, Mismatches: 15, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
41 2 0.00
42 6 0.01
43 31 0.06
44 2 0.00
45 29 0.06
46 5 0.01
47 52 0.11
48 362 0.74
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:15116507 original size:191 final size:191
Alignment explanation
Indices: 15116270--15116829 Score: 985
Period size: 191 Copynumber: 3.0 Consensus size: 191
15116260 ATATGCACAC
*
15116270 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCT-CTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
15116335 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
65 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
15116400 TACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
130 TACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
15116462 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTC-TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
15116526 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
65 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
15116591 TACCACATATACATATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
130 TACCACATATACATATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
15116653 -T-TCTATATATTTCACACTAGCCATTCGGCTTTA-C-CA-ATA-ATAT-TCATACATATTTCAC
1 ATCTCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
15116711 ACTAGCCATTCGGCTTTACCATATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
66 ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
*
15116776 ACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
131 ACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACA
15116830 CACATATATA
Statistics
Matches: 359, Mismatches: 5, Indels: 16
0.94 0.01 0.04
Matches are distributed among these distances:
184 130 0.36
185 5 0.01
186 3 0.01
187 2 0.01
188 23 0.06
189 8 0.02
190 2 0.01
191 159 0.44
192 27 0.08
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (191 bp):
ATCTCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
ACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:15126938 original size:37 final size:37
Alignment explanation
Indices: 15126888--15126966 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
15126878 TTATTACGAA
* * *
15126888 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* * *
15126925 GTCTTACTCGGACAAAATCCCCACGCGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
15126962 GTCTT
1 GTCTT
15126967 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:15127306 original size:49 final size:47
Alignment explanation
Indices: 15127085--15127430 Score: 575
Period size: 47 Copynumber: 7.3 Consensus size: 47
15127075 CCCTTCGGGA
* * * * * *
15127085 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15127132 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15127179 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15127226 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15127273 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15127322 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15127371 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15127418 CTTATCACATATA
1 CTTATCACATATA
15127431 CTTTCACGTA
Statistics
Matches: 285, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 189 0.66
49 96 0.34
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15130515 original size:43 final size:43
Alignment explanation
Indices: 15130352--15130641 Score: 325
Period size: 43 Copynumber: 6.7 Consensus size: 43
15130342 GCCACAAAAA
* * *
15130352 TTAGCGGCGTTTTTTAGAAAAAAACCCCGCTAAAGACCAGGACCT
1 TTAGCGGCG-CTTTTA-TAAAAAACGCCGCTAAAGACCAGGACCT
* * *
15130397 TTAGCGGTGCTCTTAT-AAAAACGCCGCCAAAGACCAGGACC-
1 TTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACCT
15130438 TTAGCGGCGCTTTTAT-AAAAACGCCGCTAAAGACCAGGACCT
1 TTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACCT
* * * *
15130480 TTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACTT
1 TTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACCT
* * * *
15130523 TTAGTGGTGCTTTTATAAAAAAAATGCCACTAAAGACCAGGACCT
1 TTAGCGGCGCTTTTAT--AAAAAACGCCGCTAAAGACCAGGACCT
* * * * * *
15130568 TTAGCGGCGTTTTTATAAAAAATGCCGCTATAGACCTGTACTT
1 TTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACCT
* *
15130611 TTAGCGGCACTTTTTTAAAAAACGCCGCTAA
1 TTAGCGGCGCTTTTATAAAAAACGCCGCTAA
15130642 TTTGCCCAGT
Statistics
Matches: 207, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
41 38 0.18
42 39 0.19
43 84 0.41
44 4 0.02
45 42 0.20
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (43 bp):
TTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACCT
Found at i:15130569 original size:88 final size:88
Alignment explanation
Indices: 15130352--15130632 Score: 349
Period size: 88 Copynumber: 3.2 Consensus size: 88
15130342 GCCACAAAAA
* * * * *
15130352 TTAGCGGCG-TTTTTTAGAAAAAAACCCCGCTAAAGACCAGGACCTTTAGCGGTGCTCTTAT-AA
1 TTAGCGGCGCTTTTATA-AAAAAAACGCCACTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAA
* * * * *
15130415 AAACGCCGCCAAAGACCAGGAC-C
65 AAACGCCGCTATAGACCTGTACTT
*
15130438 TTAGCGGCGCTTTTAT---AAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAA
1 TTAGCGGCGCTTTTATAAAAAAAACGCCACTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAA
15130500 AACGCCGCTATAGACCTGTACTT
66 AACGCCGCTATAGACCTGTACTT
* * * *
15130523 TTAGTGGTGCTTTTATAAAAAAAATGCCACTAAAGACCAGGACCTTTAGCGGCGTTTTTATAAAA
1 TTAGCGGCGCTTTTATAAAAAAAACGCCACTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAA
*
15130588 AATGCCGCTATAGACCTGTACTT
66 AACGCCGCTATAGACCTGTACTT
* *
15130611 TTAGCGGCACTTTTTTAAAAAA
1 TTAGCGGCGCTTTTATAAAAAA
15130633 CGCCGCTAAT
Statistics
Matches: 170, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
83 39 0.23
84 20 0.12
85 14 0.08
86 9 0.05
87 5 0.03
88 83 0.49
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (88 bp):
TTAGCGGCGCTTTTATAAAAAAAACGCCACTAAAGACCAGGACCTTTAGCGGCGCTTTTATAAAA
AACGCCGCTATAGACCTGTACTT
Found at i:15130969 original size:21 final size:21
Alignment explanation
Indices: 15130940--15130987 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
15130930 TCCTGTTCTG
*
15130940 CTCCACCTCCCTCGCTGCTAC
1 CTCCGCCTCCCTCGCTGCTAC
*
15130961 CTCCGCCTCCCTCGCTGCTCC
1 CTCCGCCTCCCTCGCTGCTAC
15130982 CTCCGC
1 CTCCGC
15130988 TCTAAGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.60, G:0.12, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTAC
Found at i:15131575 original size:18 final size:18
Alignment explanation
Indices: 15131543--15131580 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
15131533 TACAATATAG
15131543 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
15131562 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
15131579 TA
1 TA
15131581 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:15135351 original size:26 final size:26
Alignment explanation
Indices: 15135322--15135481 Score: 275
Period size: 26 Copynumber: 6.2 Consensus size: 26
15135312 TGGTACAAAT
15135322 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15135348 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
15135374 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
15135400 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15135426 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15135452 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15135478 TGAT
1 TGAT
15135482 GGGCATTTCA
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 127 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15141177 original size:26 final size:26
Alignment explanation
Indices: 15141148--15141307 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
15141138 TGGTACAAAT
15141148 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
15141174 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
15141200 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
15141226 TGATAATGGATTAGGTAAGTATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15141252 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15141278 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15141304 TGAT
1 TGAT
15141308 GGGCATTTCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15141210 original size:52 final size:52
Alignment explanation
Indices: 15141148--15141307 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
15141138 TGGTACAAAT
*
15141148 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
15141200 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAGTATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
15141252 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
15141304 TGAT
1 TGAT
15141308 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:15145293 original size:10 final size:10
Alignment explanation
Indices: 15145278--15145310 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
15145268 ATCACGTGTT
15145278 CTTATTCATA
1 CTTATTCATA
15145288 CTTATTCATA
1 CTTATTCATA
15145298 CTTATTCATA
1 CTTATTCATA
15145308 CTT
1 CTT
15145311 CAAATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (10 bp):
CTTATTCATA
Found at i:15146646 original size:23 final size:23
Alignment explanation
Indices: 15146619--15146665 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
15146609 CAGCAATTTG
15146619 GTATAACATTAACAGGAGAAATA
1 GTATAACATTAACAGGAGAAATA
*
15146642 GTATACCATTAACAGGAGAAATA
1 GTATAACATTAACAGGAGAAATA
15146665 G
1 G
15146666 GACCAAGCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (23 bp):
GTATAACATTAACAGGAGAAATA
Found at i:15149296 original size:25 final size:25
Alignment explanation
Indices: 15149268--15149319 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
15149258 TTTCTAGCTA
15149268 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
* *
15149293 ATAGTTTAACATATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
15149318 AT
1 AT
15149320 TCAAAATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (25 bp):
ATAGTTCAACAAATGCTAATTCCAC
Found at i:15149519 original size:36 final size:38
Alignment explanation
Indices: 15149478--15149553 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
15149468 CTTCAAATAC
* * *
15149478 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
15149514 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
15149553 T
1 T
15149554 CTTAAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:15149778 original size:41 final size:41
Alignment explanation
Indices: 15149733--15149992 Score: 317
Period size: 41 Copynumber: 6.4 Consensus size: 41
15149723 GTTCTATGAC
*
15149733 TTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
15149774 TTTTAGCGGCGTTTTACCGAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * **
15149815 TTTTAGCGGCGTTTTACCGAAAGCCCCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
15149856 TTTTAGTGGCATTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
15149897 TTTTAGCGGCGTTTTACCTAAAGTGCCGCTAATGATC-AGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
** ** **
15149937 TTTTAGCGGCGTTTTAGTAAAAAATGCCGCTGTTGCTCT-GT
1 TTTTAGCGGCGTTTTA-CCAAAAGCGCCGCTAATGCTCTGGT
15149978 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
15149993 TCTTAAAATG
Statistics
Matches: 191, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 18 0.09
41 173 0.91
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:15150023 original size:41 final size:40
Alignment explanation
Indices: 15149733--15150023 Score: 208
Period size: 41 Copynumber: 7.1 Consensus size: 40
15149723 GTTCTATGAC
* * * *
15149733 TTTTAGCGGCATTTTAC-CAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTTAAAA-TGCCGCTAATGCTCT-AT
** ** * *
15149774 TTTTAGCGGCGTTTTACCGAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTTAAAATGCCGCTAATGCTCT-AT
** ***
15149815 TTTTAGCGGCGTTTTACCGAAAGCCCCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACTTAAAATGCCGCTAATGCTCTA-T
* * ** ** *
15149856 TTTTAGTGGCATTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTTAAAATGCCGCTAATGCTCT-AT
* * *
15149897 TTTTAGCGGCGTTTTACCTAAAGTGCCGCTAATGATC-AGT
1 TTTTAGCGGCGTTTTACTTAAAATGCCGCTAATGCTCTA-T
* * ** *
15149937 TTTTAGCGGCGTTTTAGTAAAAAATGCCGCTGTTGCTCTGT
1 TTTTAGCGGCGTTTTACT-TAAAATGCCGCTAATGCTCTAT
* *
15149978 TTTTAGCGGCGTTTTTCTTAAAATGCCGCTATTGCTCTAT
1 TTTTAGCGGCGTTTTACTTAAAATGCCGCTAATGCTCTAT
15150018 ATTTTA
1 -TTTTA
15150024 AAATTTTTGC
Statistics
Matches: 212, Mismatches: 31, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
40 36 0.17
41 173 0.82
42 3 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACTTAAAATGCCGCTAATGCTCTAT
Found at i:15150064 original size:12 final size:12
Alignment explanation
Indices: 15150047--15150072 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15150037 GTTTGTTGAT
15150047 AAAACGCCGCTA
1 AAAACGCCGCTA
15150059 AAAACGCCGCTA
1 AAAACGCCGCTA
15150071 AA
1 AA
15150073 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:15158250 original size:13 final size:13
Alignment explanation
Indices: 15158232--15158256 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15158222 AACGAAGCTA
15158232 GACACGGCCGTGC
1 GACACGGCCGTGC
15158245 GACACGGCCGTG
1 GACACGGCCGTG
15158257 TGAACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:15161341 original size:149 final size:149
Alignment explanation
Indices: 15161071--15161371 Score: 575
Period size: 149 Copynumber: 2.0 Consensus size: 149
15161061 CCTTTAACCC
*
15161071 ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCGAGATTTGAGTTGAATGGATTGCTT
1 ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCAAGATTTGAGTTGAATGGATTGCTT
*
15161136 AGCTATGTTTTGTTCTTAATAGTTATTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
66 AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
15161201 TACATATCTGTAATTTCAT
131 TACATATCTGTAATTTCAT
*
15161220 ATTATTGTTGAAATTCCCTAAATTAATCCCTATTTTTGTCAAGATTTGAGTTGAATGGATTGCTT
1 ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCAAGATTTGAGTTGAATGGATTGCTT
15161285 AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
66 AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
15161350 TACATATCTGTAATTTCAT
131 TACATATCTGTAATTTCAT
15161369 ATT
1 ATT
15161372 TTGAGAAGAA
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (149 bp):
ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCAAGATTTGAGTTGAATGGATTGCTT
AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
TACATATCTGTAATTTCAT
Found at i:15177094 original size:20 final size:19
Alignment explanation
Indices: 15177043--15177094 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
15177033 TTTTAGAAAA
*
15177043 TTTAAAAATATATTTCCTT
1 TTTAAATATATATTTCCTT
* *
15177062 TTTGATATTTATACTTTCCTT
1 TTT-AAATATATA-TTTCCTT
15177083 TTTAAATATATA
1 TTTAAATATATA
15177095 ATACAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 3 0.12
20 13 0.50
21 10 0.38
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTAAATATATATTTCCTT
Found at i:15177998 original size:2 final size:2
Alignment explanation
Indices: 15177993--15178025 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
15177983 TAGATTATGT
*
15177993 TA TA TA TA TA TA TA TA TA TG TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15178026 ATTTATAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15185098 original size:47 final size:47
Alignment explanation
Indices: 15185020--15185429 Score: 606
Period size: 47 Copynumber: 8.6 Consensus size: 47
15185010 CCCTTCGGGA
* * * * * *
15185020 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15185066 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15185114 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15185161 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15185208 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15185257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15185304 CTTATCACATATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15185355 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15185404 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
15185430 CACAATTATC
Statistics
Matches: 334, Mismatches: 20, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 193 0.58
48 2 0.01
49 92 0.28
51 45 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15185254 original size:96 final size:96
Alignment explanation
Indices: 15185020--15185429 Score: 627
Period size: 96 Copynumber: 4.3 Consensus size: 96
15185010 CCCTTCGGGA
* * * * * *
15185020 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA
15185082 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
15185114 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
15185177 ACTTTCACATTCATCACATCCGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
15185208 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
15185273 ACTTTCACATTCATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
15185304 CTTATCACATATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATGTAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TAT
15185369 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
15185404 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
15185430 CACAATTATC
Statistics
Matches: 291, Mismatches: 16, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
93 1 0.00
94 86 0.30
95 2 0.01
96 97 0.33
98 60 0.21
100 45 0.15
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15198253 original size:19 final size:19
Alignment explanation
Indices: 15198229--15198266 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15198219 AATTAATAGC
*
15198229 TAATTAACCTTAATTACTT
1 TAATTAAACTTAATTACTT
15198248 TAATTAAACTTAATTACTT
1 TAATTAAACTTAATTACTT
15198267 AACCTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTAAACTTAATTACTT
Found at i:15200651 original size:30 final size:29
Alignment explanation
Indices: 15200613--15200672 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
15200603 GATACACGGG
* *
15200613 AATAAGTTGTTTACACAAGCTGACATTAT
1 AATAAGTTGCTCACACAAGCTGACATTAT
*
15200642 AATATAGTTGCTCACACAAGTTGACATTAT
1 AATA-AGTTGCTCACACAAGCTGACATTAT
15200672 A
1 A
15200673 TCGAGGTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (29 bp):
AATAAGTTGCTCACACAAGCTGACATTAT
Found at i:15204023 original size:40 final size:40
Alignment explanation
Indices: 15203932--15204143 Score: 300
Period size: 40 Copynumber: 5.3 Consensus size: 40
15203922 TCCTCGTTCA
* * * ** *
15203932 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
15203971 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
15204011 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
15204051 AATGCCTTCGGGACTTAACCCCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAA--CCCGGATTTAACAACTCGCACG
** * *
15204093 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
15204133 AAGGCCTTCGG
1 AATGCCTTCGG
15204144 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.21
40 86 0.54
42 40 0.25
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:15204094 original size:82 final size:79
Alignment explanation
Indices: 15203932--15204143 Score: 316
Period size: 82 Copynumber: 2.6 Consensus size: 79
15203922 TCCTCGTTCA
* * * *
15203932 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
15203997 TAACAACTCGCACG
66 TAACAACTCGCACG
**
15204011 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCCCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAA--CCCGG
15204076 ATTTAACAACTCGCACG
63 ATTTAACAACTCGCACG
* *
15204093 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGG
15204144 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
79 33 0.28
80 18 0.15
82 68 0.57
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:15204188 original size:122 final size:121
Alignment explanation
Indices: 15203962--15204189 Score: 291
Period size: 122 Copynumber: 1.9 Consensus size: 121
15203952 CGGTTTTAGT
* *
15203962 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
* * *
15204027 AACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCCCGGATTTAAC
66 AACCCGGATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCCCGGATTTAAC
* ** *
15204083 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATC
1 AACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
15204147 TTAGTCCGGATATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTA
64 TTAACCCGGATATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTA
15204190 GCCCGGACAG
Statistics
Matches: 91, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
121 11 0.12
122 74 0.81
123 6 0.07
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (121 bp):
AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCCCGGATTTAAC
Found at i:15204205 original size:41 final size:41
Alignment explanation
Indices: 15204128--15204205 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15204118 TTAGTATCTC
* * *
15204128 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15204169 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15204206 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15211352 original size:40 final size:40
Alignment explanation
Indices: 15211261--15211472 Score: 300
Period size: 40 Copynumber: 5.3 Consensus size: 40
15211251 TCCTCGTTCA
* * * ** *
15211261 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
15211300 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
15211340 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
15211380 AATGCCTTCGGGACTTAACCCCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAA--CCCGGATTTAACAACTCGCACG
** * *
15211422 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
15211462 AAGGCCTTCGG
1 AATGCCTTCGG
15211473 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.21
40 86 0.54
42 40 0.25
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:15211423 original size:82 final size:79
Alignment explanation
Indices: 15211261--15211472 Score: 316
Period size: 82 Copynumber: 2.6 Consensus size: 79
15211251 TCCTCGTTCA
* * * *
15211261 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
15211326 TAACAACTCGCACG
66 TAACAACTCGCACG
**
15211340 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCCCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAA--CCCGG
15211405 ATTTAACAACTCGCACG
63 ATTTAACAACTCGCACG
* *
15211422 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGG
15211473 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
79 33 0.28
80 18 0.15
82 68 0.57
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:15211517 original size:122 final size:121
Alignment explanation
Indices: 15211291--15211518 Score: 291
Period size: 122 Copynumber: 1.9 Consensus size: 121
15211281 CGGTTTTAGT
* *
15211291 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
* * *
15211356 AACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCCCGGATTTAAC
66 AACCCGGATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCCCGGATTTAAC
* ** *
15211412 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATC
1 AACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
15211476 TTAGTCCGGATATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTA
64 TTAACCCGGATATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTA
15211519 GCCCGGACAG
Statistics
Matches: 91, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
121 11 0.12
122 74 0.81
123 6 0.07
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (121 bp):
AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCCCGGATTTAAC
Found at i:15211534 original size:41 final size:41
Alignment explanation
Indices: 15211457--15211534 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15211447 TTAGTATCTC
* * *
15211457 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15211498 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15211535 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15218924 original size:51 final size:51
Alignment explanation
Indices: 15218853--15218968 Score: 142
Period size: 51 Copynumber: 2.3 Consensus size: 51
15218843 GGTTAGGTCG
* * * ***
15218853 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAGCTTCGATCA
1 CATGTGTGGTACTAAATGCAGGCCACTATGCATAAAAGATAGCTTCGATCA
** * *
15218904 CATGTGTGGTACTAAATGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCA
1 CATGTGTGGTACTAAATGCAGGCCACTATGCATAAAAGATAGCTTCGATCA
15218955 CATGTGTGGTACTA
1 CATGTGTGGTACTA
15218969 TGTGAAGGAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (51 bp):
CATGTGTGGTACTAAATGCAGGCCACTATGCATAAAAGATAGCTTCGATCA
Found at i:15218998 original size:51 final size:51
Alignment explanation
Indices: 15218890--15219002 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
15218880 ATGCATACCT
* *
15218890 GATAGCTTCGATCACATGTGTGGTACTAAATGCAGGCCACTATGTGTAAAA
1 GATAGCTTCGATCACATGTGTGGTACTAAATGAAGGACACTATGTGTAAAA
* * ** *
15218941 GATAGCTTTGGTCACATGTGTGGTACTATGTGAAGGACACTTTGTG-AAGAA
1 GATAGCTTCGATCACATGTGTGGTACTAAATGAAGGACACTATGTGTAA-AA
*
15218992 GGTAGCTTCGA
1 GATAGCTTCGA
15219003 GTACAAGGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 2 0.04
51 49 0.96
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (51 bp):
GATAGCTTCGATCACATGTGTGGTACTAAATGAAGGACACTATGTGTAAAA
Found at i:15224553 original size:384 final size:384
Alignment explanation
Indices: 15223844--15224615 Score: 1436
Period size: 384 Copynumber: 2.0 Consensus size: 384
15223834 AGCTTGAAAA
15223844 TTGAAGAAACCCTAGCTATGGTGTCCTCCAAATTTCGACAGCTATGAGAAGAAGATGAGCATATT
1 TTGAAGAAACCCTAGCTATGGTGTCCTCCAAATTTCGACAGCTATGAGAAGAAGATGAGCATATT
15223909 TTTGCTTTATTTTTTCCTTTTTATTTCATTAAAATGAAAAATGACCAAAATACCCTTATGCCTTT
66 TTTGCTTTATTTTTTCCTTTTTATTTCATTAAAATGAAAAATGACCAAAATACCCTTATGCCTTT
* *
15223974 TTTAAAAAATTTCATCCATGCAAGCCTATTTTTGTCGAAAAACTTAGAATTTGGGAAAATTTCTC
131 TTTAAAAAATTTCATCCATACAAGCCTATTTTTGTCCAAAAACTTAGAATTTGGGAAAATTTCTC
15224039 TCCAAGACCTTCTAATTCATAATCTAAAGCAATTTCATACAAATTGCTTCTAGAAACCAAGTTTT
196 TCCAAGACCTTCTAATTCATAATCTAAAGCAATTTCATACAAATTGCTTCTAGAAACCAAGTTTT
* *
15224104 TCAATTTATTCAATTTACTCCCTAATTTCCAATTGGACATCTTATACTTAGAATTTTTTCATGAA
261 GCAATTTATTCAATATACTCCCTAATTTCCAATTGGACATCTTATACTTAGAATTTTTTCATGAA
15224169 ACTTTAACACATGCATATAGTCATATTCTAGGCCTCATAATAATCATAAAATAAATATT
326 ACTTTAACACATGCATATAGTCATATTCTAGGCCTCATAATAATCATAAAATAAATATT
* *
15224228 TTGAAGAAACCCTAGCTATGGTGTCCTCCAAATTTCGGCAGCTATGGGAAGAAGATGAGCATATT
1 TTGAAGAAACCCTAGCTATGGTGTCCTCCAAATTTCGACAGCTATGAGAAGAAGATGAGCATATT
*
15224293 TTTGCTTTATTTTTTCCTTTTTATTTCATTAAAATGACAAATGACCAAAATACCCTTATGCCTTT
66 TTTGCTTTATTTTTTCCTTTTTATTTCATTAAAATGAAAAATGACCAAAATACCCTTATGCCTTT
**
15224358 TTTTTAAAATTTCATCCATACAAGCCTATTTTTGTCCAAAAACTTAGAATTTGGGAAAATTTCTC
131 TTTAAAAAATTTCATCCATACAAGCCTATTTTTGTCCAAAAACTTAGAATTTGGGAAAATTTCTC
*
15224423 TCCAAGACCTTCTAATTCATAATCTAAAGCAATTTCTTACAAATTGCTTCTAGAAACCAAGTTTT
196 TCCAAGACCTTCTAATTCATAATCTAAAGCAATTTCATACAAATTGCTTCTAGAAACCAAGTTTT
*
15224488 GCAATTTATTCAATATAGTCCCTAATTTCCAATTGGACATCTTATACTTAGAATTTTTTCATGAA
261 GCAATTTATTCAATATACTCCCTAATTTCCAATTGGACATCTTATACTTAGAATTTTTTCATGAA
*
15224553 ACTTTAACACATGCATATAGTTATATTCTAGGCCTCATAATAATCATAAAATAAATATT
326 ACTTTAACACATGCATATAGTCATATTCTAGGCCTCATAATAATCATAAAATAAATATT
15224612 TTGA
1 TTGA
15224616 TGTCAGATTT
Statistics
Matches: 376, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
384 376 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (384 bp):
TTGAAGAAACCCTAGCTATGGTGTCCTCCAAATTTCGACAGCTATGAGAAGAAGATGAGCATATT
TTTGCTTTATTTTTTCCTTTTTATTTCATTAAAATGAAAAATGACCAAAATACCCTTATGCCTTT
TTTAAAAAATTTCATCCATACAAGCCTATTTTTGTCCAAAAACTTAGAATTTGGGAAAATTTCTC
TCCAAGACCTTCTAATTCATAATCTAAAGCAATTTCATACAAATTGCTTCTAGAAACCAAGTTTT
GCAATTTATTCAATATACTCCCTAATTTCCAATTGGACATCTTATACTTAGAATTTTTTCATGAA
ACTTTAACACATGCATATAGTCATATTCTAGGCCTCATAATAATCATAAAATAAATATT
Found at i:15225272 original size:167 final size:167
Alignment explanation
Indices: 15224996--15225331 Score: 672
Period size: 167 Copynumber: 2.0 Consensus size: 167
15224986 TCGGGTGGCA
15224996 ATGCCAAATGATAGGCTAACGGTCCAACTCTTTCAGTGATCTCGTATGATTCAATAAATCGTGGA
1 ATGCCAAATGATAGGCTAACGGTCCAACTCTTTCAGTGATCTCGTATGATTCAATAAATCGTGGA
15225061 CTCAATTTACCTTTCCGACCAAATCTCAATACCTTTTTCCATGGAGATACTTTCAAGAATACTCT
66 CTCAATTTACCTTTCCGACCAAATCTCAATACCTTTTTCCATGGAGATACTTTCAAGAATACTCT
15225126 ATCTCCAACTTGAAACTCAATCTCCTTTTCTTTTAAG
131 ATCTCCAACTTGAAACTCAATCTCCTTTTCTTTTAAG
15225163 ATGCCAAATGATAGGCTAACGGTCCAACTCTTTCAGTGATCTCGTATGATTCAATAAATCGTGGA
1 ATGCCAAATGATAGGCTAACGGTCCAACTCTTTCAGTGATCTCGTATGATTCAATAAATCGTGGA
15225228 CTCAATTTACCTTTCCGACCAAATCTCAATACCTTTTTCCATGGAGATACTTTCAAGAATACTCT
66 CTCAATTTACCTTTCCGACCAAATCTCAATACCTTTTTCCATGGAGATACTTTCAAGAATACTCT
15225293 ATCTCCAACTTGAAACTCAATCTCCTTTTCTTTTAAG
131 ATCTCCAACTTGAAACTCAATCTCCTTTTCTTTTAAG
15225330 AT
1 AT
15225332 CAACATAAGA
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 169 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (167 bp):
ATGCCAAATGATAGGCTAACGGTCCAACTCTTTCAGTGATCTCGTATGATTCAATAAATCGTGGA
CTCAATTTACCTTTCCGACCAAATCTCAATACCTTTTTCCATGGAGATACTTTCAAGAATACTCT
ATCTCCAACTTGAAACTCAATCTCCTTTTCTTTTAAG
Found at i:15245870 original size:7 final size:7
Alignment explanation
Indices: 15245858--15246001 Score: 91
Period size: 7 Copynumber: 19.6 Consensus size: 7
15245848 AATTATACAT
15245858 AATAATA
1 AATAATA
15245865 AATAATA
1 AATAATA
15245872 AATAATA
1 AATAATA
15245879 TAATATATA
1 -AATA-ATA
*
15245888 ATAAAATA
1 A-ATAATA
15245896 AA-AATA
1 AATAATA
15245902 AA-AATA
1 AATAATA
*
15245908 ATATAATG
1 A-ATAATA
15245916 AATAATA
1 AATAATA
15245923 TATATAATAA
1 -A-ATAAT-A
*
15245933 AATGATA
1 AATAATA
15245940 TAATATATA
1 -AATA-ATA
*
15245949 ATAAAATA
1 A-ATAATA
*
15245957 TATAATA
1 AATAATA
15245964 AA-ATATA
1 AATA-ATA
15245971 AATAAT-
1 AATAATA
15245977 -ATAATA
1 AATAATA
15245983 AATAATA
1 AATAATA
*
15245990 CATAAATA
1 AAT-AATA
15245998 AATA
1 AATA
15246002 TAATATATAT
Statistics
Matches: 110, Mismatches: 11, Indels: 32
0.72 0.07 0.21
Matches are distributed among these distances:
5 5 0.05
6 12 0.11
7 44 0.40
8 32 0.29
9 16 0.15
10 1 0.01
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (7 bp):
AATAATA
Found at i:15245883 original size:12 final size:12
Alignment explanation
Indices: 15245856--15246006 Score: 114
Period size: 12 Copynumber: 13.5 Consensus size: 12
15245846 AAAATTATAC
15245856 ATAAT-AATAA-
1 ATAATAAATAAT
15245866 ATAATAAATAAT
1 ATAATAAATAAT
*
15245878 ATAATATATAAT
1 ATAATAAATAAT
*
15245890 AAAAT-AA-AA-
1 ATAATAAATAAT
15245899 ATAA-AAATAAT
1 ATAATAAATAAT
*
15245910 ATAATGAATAAT
1 ATAATAAATAAT
*
15245922 AT-ATATAATAAA
1 ATAATA-AATAAT
*
15245934 ATGATATAAT-AT
1 ATAATA-AATAAT
15245946 ATAAT-AA-AAT
1 ATAATAAATAAT
*
15245956 AT-AT-AATAAA
1 ATAATAAATAAT
15245966 AT-ATAAATAAT
1 ATAATAAATAAT
15245977 ATAATAAATAAT
1 ATAATAAATAAT
*
15245989 A-CATAAATAAAT
1 ATAATAAAT-AAT
15246001 ATAATA
1 ATAATA
15246007 TATATAATAA
Statistics
Matches: 114, Mismatches: 13, Indels: 25
0.75 0.09 0.16
Matches are distributed among these distances:
9 9 0.08
10 21 0.18
11 25 0.22
12 49 0.43
13 10 0.09
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:15245907 original size:29 final size:29
Alignment explanation
Indices: 15245851--15246010 Score: 121
Period size: 31 Copynumber: 5.1 Consensus size: 29
15245841 CTTTTAAAAT
15245851 TATACATAATAATAAATAATAAATAATATAATA
1 TATA-ATAA-AATAAA-AATAAA-AATATAATA
15245884 TATAATAAAATAAAAAT-AAAA-ATAATA
1 TATAATAAAATAAAAATAAAAATATAATA
* *
15245911 TAATGAATAATATATATAATAAAATGATATAATA
1 T-AT-AATAAAATA-AAAATAAAA--ATATAATA
*
15245945 TATAATAAAATATATAAT-AAAATATAAATAA
1 TATAATAAAATA-AAAATAAAAATAT-AAT-A
*
15245976 TATAAT-AAATAATACATAAATAAATATAATA
1 TATAATAAAATAA-AAAT-AA-AAATATAATA
15246007 TATA
1 TATA
15246011 TAATAATTTT
Statistics
Matches: 109, Mismatches: 5, Indels: 28
0.77 0.04 0.20
Matches are distributed among these distances:
27 7 0.06
28 4 0.04
29 15 0.14
30 17 0.16
31 24 0.22
32 22 0.20
33 13 0.12
34 7 0.06
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (29 bp):
TATAATAAAATAAAAATAAAAATATAATA
Found at i:15246015 original size:29 final size:28
Alignment explanation
Indices: 15245868--15246017 Score: 98
Period size: 29 Copynumber: 5.1 Consensus size: 28
15245858 AATAATAAAT
15245868 AATAAAT-AATATAATATATAATAA-AAT
1 AATAAATAAATATAATATAT-ATAATAAT
*
15245895 AA-AAATAAAAATAATATA-ATGAATAAT
1 AATAAATAAATATAATATATAT-AATAAT
*
15245922 ATATATAATAAA-ATGATATAATATATAATAAA
1 A-ATA-AATAAATAT-A-AT-ATATATAATAAT
15245954 ATATATAATAAAATATAA-ATAATATAATAAAT
1 A-ATA-AAT-AAATATAATAT-ATATAAT-AAT
*
15245986 AATACATAAATA-AATATAATATATATAAT
1 AATAAATAAATATAATAT-ATATA-ATAAT
15246015 AAT
1 AAT
15246018 TTTTTTACAT
Statistics
Matches: 103, Mismatches: 4, Indels: 30
0.75 0.03 0.22
Matches are distributed among these distances:
25 2 0.02
26 6 0.06
27 16 0.16
28 3 0.03
29 22 0.21
30 13 0.13
31 12 0.12
32 21 0.20
33 6 0.06
34 2 0.02
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (28 bp):
AATAAATAAATATAATATATATAATAAT
Found at i:15246530 original size:108 final size:108
Alignment explanation
Indices: 15246341--15246554 Score: 338
Period size: 108 Copynumber: 2.0 Consensus size: 108
15246331 ACGAAATTAA
* * *
15246341 AAAAGGGAAAAATGCAGAAGGGCTCAAATGGTAATTTGCCCATTTACCAAAAACACGCAGATCCT
1 AAAAGGGAAAAATGCAGAAGGGCTCAAATGGCAATTTGACCATCTACCAAAAACACGCAGATCCT
*
15246406 CCCCGGGTCACGGTTCAACGCGTGGATCCTAAACTTAAACGGC
66 CCCCGGGTCACGGTTCAACGCGCGGATCCTAAACTTAAACGGC
* *
15246449 AAAAGGGAAAAATGCGGAAGGGCTCAAATGGCAATTTTACCATCTACCAAAAACACGCAGATCCT
1 AAAAGGGAAAAATGCAGAAGGGCTCAAATGGCAATTTGACCATCTACCAAAAACACGCAGATCCT
* * **
15246514 CCTCGGGTCACGGTTCAACTCGCGGATCCTTCACTTAAACG
66 CCCCGGGTCACGGTTCAACGCGCGGATCCTAAACTTAAACG
15246555 CTGCCGTTTT
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 96 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (108 bp):
AAAAGGGAAAAATGCAGAAGGGCTCAAATGGCAATTTGACCATCTACCAAAAACACGCAGATCCT
CCCCGGGTCACGGTTCAACGCGCGGATCCTAAACTTAAACGGC
Found at i:15247503 original size:12 final size:12
Alignment explanation
Indices: 15247480--15247519 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
15247470 TTTTATTATT
15247480 TTTTGATTTTTTG
1 TTTTG-TTTTTTG
15247493 TTTTGTTTTTTG
1 TTTTGTTTTTTG
15247505 TTTT-TTTTTTCG
1 TTTTGTTTTTT-G
15247517 TTT
1 TTT
15247520 CTTTTTCGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 6 0.23
12 15 0.58
13 5 0.19
ACGTcount: A:0.03, C:0.03, G:0.12, T:0.82
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:15249047 original size:92 final size:93
Alignment explanation
Indices: 15248936--15249107 Score: 294
Period size: 92 Copynumber: 1.9 Consensus size: 93
15248926 CGCCCATAAG
15248936 TGAACTCGGACTCAACTCAACGAGCTCCGG-CATTCGCATCCATAAGTGAA-TCAGACTCAACTC
1 TGAACTCGGACTCAACTCAACGAG-TCCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
15248999 AACGAGCTCGGATGCCTAGTTATATCTCT
65 AACGAGCTCGGATGCCTAGTTATATCTCT
* *
15249028 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGTCCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
15249093 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
15249108 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
91 4 0.05
92 44 0.59
93 27 0.36
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGTCCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTATATCTCT
Found at i:15249094 original size:46 final size:46
Alignment explanation
Indices: 15248929--15249103 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
15248919 TGTAACCCGC
*
15248929 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * **
15248975 CCATAAGTGAA-TCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
15249024 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
15249067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
15249104 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 9, Indels: 26
0.75 0.06 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 4 0.04
45 18 0.17
46 45 0.42
47 23 0.21
48 1 0.01
49 5 0.05
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:15254537 original size:93 final size:93
Alignment explanation
Indices: 15254425--15254596 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
15254415 GCCCATAAGT
* *
15254425 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15254489 ACCAGCTCGGATGCCTAGTTACATCTCTC
65 ACCAGCTCGGATGCCTAGTTACATCTCTC
15254518 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
15254583 CGAGTTCGGATGCC
66 CCAGCTCGGATGCC
15254597 CAAATATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CCAGCTCGGATGCCTAGTTACATCTCTC
Found at i:15254587 original size:46 final size:46
Alignment explanation
Indices: 15254417--15254592 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
15254407 TGTAACCCGC
* *
15254417 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * *
15254463 CCATAAGTGAACTCGGACTCAACTCAACCAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
15254509 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
15254556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
15254593 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:15256099 original size:26 final size:27
Alignment explanation
Indices: 15256062--15256114 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
15256052 AAATATTACA
* *
15256062 ATTTTTCTTTTTA-TTTTCTTTAATTT
1 ATTTTTCATTTTACTGTTCTTTAATTT
*
15256088 ATTTTTCATTTTACTGTTGTTTAATTT
1 ATTTTTCATTTTACTGTTCTTTAATTT
15256115 TATGAATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.17, C:0.08, G:0.04, T:0.72
Consensus pattern (27 bp):
ATTTTTCATTTTACTGTTCTTTAATTT
Found at i:15259732 original size:27 final size:26
Alignment explanation
Indices: 15259695--15259809 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
15259685 AGCATGGCTG
* * *
15259695 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
15259721 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGAT-ATTGTGGCAGAGCCA
15259749 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATAT-TGTGGCAGAGCCA
* *
15259776 CCAGACCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
15259803 CCAGAAC
1 CCAGAAC
15259810 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 53 0.69
28 17 0.22
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:15261447 original size:26 final size:26
Alignment explanation
Indices: 15261418--15261527 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
15261408 CATGAAATTC
15261418 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15261444 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15261470 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * * *
15261496 TTATCCTGGACCATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15261522 TTATCA
1 TTATCA
15261528 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15264974 original size:527 final size:527
Alignment explanation
Indices: 15263981--15265041 Score: 1996
Period size: 527 Copynumber: 2.0 Consensus size: 527
15263971 GATCCCTGAA
*
15263981 TTTCGTTGCCCGAACTTGCTCCGGCAACCCTTTCCAGAACACGAAGCATTGCCTGTGACACGGCA
1 TTTCGTTGCCCGAACTTGCTCCGGAAACCCTTTCCAGAACACGAAGCATTGCCTGTGACACGGCA
15264046 TCATCCTCGGCACCGCGGTCATGAGACTCTACCTCTTTGCCGGTGGTACCGGTGCATCCACCGTC
66 TCATCCTCGGCACCGCGGTCATGAGACTCTACCTCTTTGCCGGTGGTACCGGTGCATCCACCGTC
* *
15264111 GGCATATGTCCCAAAGACGAAGATCTCGCTCGAGCACTTCCTCGGCTCCGTCCACAGCCTATTGT
131 GGCATATGTCCCAAAGACAAAGATCTCGCTCGAGCACTTCCTCGGCTCCATCCACAGCCTATTGT
15264176 ACTCATATCGTATTATCTTGATTACAAATTTTTATGCATCAATTAATATTTCAGTGTTTATTACA
196 ACTCATATCGTATTATCTTGATTACAAATTTTTATGCATCAATTAATATTTCAGTGTTTATTACA
15264241 GATGTTTTATGAATCAGACAGTAATTCAAAGTTTGTTTTCGCAGAATCGAAGTCTAGCTACAGTT
261 GATGTTTTATGAATCAGACAGTAATTCAAAGTTTGTTTTCGCAGAATCGAAGTCTAGCTACAGTT
15264306 TTAGTCTCTTATCAGATTTTCCTATGGTTTCAGAATCATCCTATCTAGAGTATCCTAGTAGGGTT
326 TTAGTCTCTTATCAGATTTTCCTATGGTTTCAGAATCATCCTATCTAGAGTATCCTAGTAGGGTT
* *
15264371 TCAGTACAAACAGATAATTCAGAAAAATATTCAGAAGAGTTCAGAGCAATACTTACAGGCTTGGG
391 TCAGTACAAACAAATAATTCAAAAAAATATTCAGAAGAGTTCAGAGCAATACTTACAGGCTTGGG
15264436 CCGGAGATTCGGAATACCACCTTCTAAAGATCTAAATTTTAAAAATCGAGTTTTTCGCATTCTTT
456 CCGGAGATTCGGAATACCACCTTCTAAAGATCTAAATTTTAAAAATCGAGTTTTTCGCATTCTTT
15264501 ATAAAAT
521 ATAAAAT
*
15264508 TTTCGTTGCCCGAACTTGCTCCGGAAACCCTTTCCAGAACACGACGCATTGCCTGTGACACGGCA
1 TTTCGTTGCCCGAACTTGCTCCGGAAACCCTTTCCAGAACACGAAGCATTGCCTGTGACACGGCA
* *
15264573 TCATCCTCGGCACTGTGGTCATGAGACTCTACCTCTTTGCCGGTGGTACCGGTGCATCCACCGTC
66 TCATCCTCGGCACCGCGGTCATGAGACTCTACCTCTTTGCCGGTGGTACCGGTGCATCCACCGTC
* *
15264638 GGCATATGTCCCAAAGACAAAGATCTCGCTCGAGCACTTTCTCGGCTCCATCCACAGCCTCTTGT
131 GGCATATGTCCCAAAGACAAAGATCTCGCTCGAGCACTTCCTCGGCTCCATCCACAGCCTATTGT
* *
15264703 ACTCATATCGTATTATCTTGATTATAATTTTTTATGCATCAATTAATATTTCAGTGTTTATTACA
196 ACTCATATCGTATTATCTTGATTACAAATTTTTATGCATCAATTAATATTTCAGTGTTTATTACA
15264768 GATGTTTTATGAATCAGACAGTAATTCAAAGTTTGTTTTCGCAGAATCGAAGTCTAGCTACAGTT
261 GATGTTTTATGAATCAGACAGTAATTCAAAGTTTGTTTTCGCAGAATCGAAGTCTAGCTACAGTT
15264833 TTAGTCTCTTATCAGATTTTCCTATGGTTTCAGAATCATCCTATCTAGAGTATCCTAGTAGGGTT
326 TTAGTCTCTTATCAGATTTTCCTATGGTTTCAGAATCATCCTATCTAGAGTATCCTAGTAGGGTT
15264898 TCAGTACAAACAAATAATTCAAAAAAATATTCAGAAGAGTTCAGAGCAATACTTACAGGCTTGGG
391 TCAGTACAAACAAATAATTCAAAAAAATATTCAGAAGAGTTCAGAGCAATACTTACAGGCTTGGG
* *
15264963 CCGGAGATTCGGAATGCCACCTTCTAAAGATCTAAATTTTGAAAATCGAGTTTTTCGCATTCTTT
456 CCGGAGATTCGGAATACCACCTTCTAAAGATCTAAATTTTAAAAATCGAGTTTTTCGCATTCTTT
15265028 ATAAAAT
521 ATAAAAT
15265035 TTTCGTT
1 TTTCGTT
15265042 TTCAAAAATC
Statistics
Matches: 520, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
527 520 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (527 bp):
TTTCGTTGCCCGAACTTGCTCCGGAAACCCTTTCCAGAACACGAAGCATTGCCTGTGACACGGCA
TCATCCTCGGCACCGCGGTCATGAGACTCTACCTCTTTGCCGGTGGTACCGGTGCATCCACCGTC
GGCATATGTCCCAAAGACAAAGATCTCGCTCGAGCACTTCCTCGGCTCCATCCACAGCCTATTGT
ACTCATATCGTATTATCTTGATTACAAATTTTTATGCATCAATTAATATTTCAGTGTTTATTACA
GATGTTTTATGAATCAGACAGTAATTCAAAGTTTGTTTTCGCAGAATCGAAGTCTAGCTACAGTT
TTAGTCTCTTATCAGATTTTCCTATGGTTTCAGAATCATCCTATCTAGAGTATCCTAGTAGGGTT
TCAGTACAAACAAATAATTCAAAAAAATATTCAGAAGAGTTCAGAGCAATACTTACAGGCTTGGG
CCGGAGATTCGGAATACCACCTTCTAAAGATCTAAATTTTAAAAATCGAGTTTTTCGCATTCTTT
ATAAAAT
Found at i:15265960 original size:19 final size:22
Alignment explanation
Indices: 15265921--15265960 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
15265911 AGAAACCCAA
15265921 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
15265943 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
15265961 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:15266084 original size:27 final size:26
Alignment explanation
Indices: 15266026--15266136 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
15266016 TGGCTGCCAT
* *
15266026 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
*
15266052 ATACAGATAATCATGGCAGAGCCACCAG
1 A-ACAGATAAT-GTGGCAGAGCCACCAG
15266080 AACAGATATATGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* * * *
15266107 ACCAGATATTTGTGGGATAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
15266134 AAC
1 AAC
15266137 GCTTCCTCCA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 56 0.77
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:15267775 original size:26 final size:26
Alignment explanation
Indices: 15267746--15267855 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
15267736 CATGAAATTC
15267746 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15267772 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15267798 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
15267824 TTATCCTGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15267850 TTATCA
1 TTATCA
15267856 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15269198 original size:18 final size:19
Alignment explanation
Indices: 15269177--15269213 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15269167 TTTTTATCCC
*
15269177 TTACATTTAT-TTTTAATT
1 TTACACTTATATTTTAATT
15269195 TTACACTTATATTTTAATT
1 TTACACTTATATTTTAATT
15269214 CAGTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (19 bp):
TTACACTTATATTTTAATT
Found at i:15284051 original size:15 final size:14
Alignment explanation
Indices: 15284031--15284071 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
15284021 AGTCCATTTA
15284031 TTTTATTTTTTTATT
1 TTTTATTTTTTT-TT
15284046 TTTTATTTTTGTTTT
1 TTTTATTTTT-TTTT
*
15284061 ATTTATTTTTT
1 TTTTATTTTTT
15284072 GAAGACTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 1 0.04
15 21 0.88
16 2 0.08
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTTTT
Found at i:15297259 original size:12 final size:12
Alignment explanation
Indices: 15297244--15297299 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
15297234 AAAAGTAATT
*
15297244 TAAAAATATAAA
1 TAAAAATAAAAA
*
15297256 TAAAGATAAAAA
1 TAAAAATAAAAA
15297268 T-AAAAT-AAAA
1 TAAAAATAAAAA
15297278 TAAAAAATAAAAA
1 T-AAAAATAAAAA
15297291 TAAATAATA
1 TAAA-AATA
15297300 GATGTTTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 5 0.14
11 4 0.11
12 19 0.51
13 9 0.24
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (12 bp):
TAAAAATAAAAA
Found at i:15297287 original size:23 final size:23
Alignment explanation
Indices: 15297246--15297294 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
15297236 AAGTAATTTA
*
15297246 AAAATATAAATAAAGATAAAAAT
1 AAAATATAAATAAAAATAAAAAT
15297269 AAAATA-AAATAAAAAATAAAAAT
1 AAAATATAAAT-AAAAATAAAAAT
15297292 AAA
1 AAA
15297295 TAATAGATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAATATAAATAAAAATAAAAAT
Found at i:15297295 original size:17 final size:17
Alignment explanation
Indices: 15297229--15297297 Score: 68
Period size: 18 Copynumber: 3.9 Consensus size: 17
15297219 TATTAAAGGG
* *
15297229 AAATAAAAAGTAATTTAA
1 AAATAAAAA-TAAATAAA
* *
15297247 AAATATAAATAAAGATAA
1 AAATAAAAATAAATA-AA
15297265 AAAT-AAAATAAAATAAA
1 AAATAAAAAT-AAATAAA
15297282 AAATAAAAATAAATAA
1 AAATAAAAATAAATAA
15297298 TAGATGTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
17 19 0.45
18 23 0.55
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
AAATAAAAATAAATAAA
Found at i:15303209 original size:12 final size:13
Alignment explanation
Indices: 15303189--15303221 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15303179 AATATATGTA
15303189 AAATTGAAG-TTT
1 AAATTGAAGCTTT
*
15303201 AATTTGAAGCTTT
1 AAATTGAAGCTTT
15303214 AAATTGAA
1 AAATTGAA
15303222 AGTTATGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.39
Consensus pattern (13 bp):
AAATTGAAGCTTT
Found at i:15309947 original size:27 final size:29
Alignment explanation
Indices: 15309917--15309978 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 29
15309907 TATTTTTTCG
15309917 TAAAAATT-AT-TAAAAATAAAAAAAT--
1 TAAAAATTGATATAAAAATAAAAAAATCA
* * *
15309942 TATAAATTGATATAAATATATAAAAATCA
1 TAAAAATTGATATAAAAATAAAAAAATCA
15309971 TAAAAATT
1 TAAAAATT
15309979 TATAAATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 7 0.24
26 2 0.07
27 13 0.45
29 7 0.24
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (29 bp):
TAAAAATTGATATAAAAATAAAAAAATCA
Found at i:15309976 original size:54 final size:53
Alignment explanation
Indices: 15309917--15310043 Score: 125
Period size: 54 Copynumber: 2.4 Consensus size: 53
15309907 TATTTTTTCG
* *
15309917 TAAAAATTATTAAAAATA-AAAAAATTATAAATTGATATAAATATATAAAAATCA
1 TAAAAATTATTAAAAATATAAAAAA-TA-AAATTCAAATAAATATATAAAAATCA
* * * *
15309971 TAAAAATT-TATAAATATTATAAAAAATAAAATTCAAATAAATTTTTAAAAATTA
1 TAAAAATTAT-TAAA-AATATAAAAAATAAAATTCAAATAAATATATAAAAATCA
*
15310025 T-AAAATTAGTAAAATATAT
1 TAAAAATTATTAAAA-ATAT
15310044 TTTAAAATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
52 1 0.02
53 14 0.23
54 34 0.57
55 5 0.08
56 6 0.10
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (53 bp):
TAAAAATTATTAAAAATATAAAAAATAAAATTCAAATAAATATATAAAAATCA
Found at i:15309990 original size:9 final size:9
Alignment explanation
Indices: 15309917--15310038 Score: 71
Period size: 10 Copynumber: 13.6 Consensus size: 9
15309907 TATTTTTTCG
15309917 TAAAAATTA
1 TAAAAATTA
15309926 TTAAAAA-TA
1 -TAAAAATTA
*
15309935 AAAAAATTA
1 TAAAAATTA
15309944 T--AAATTGA
1 TAAAAATT-A
*
15309952 TATAAATATA
1 TAAAAAT-TA
*
15309962 TAAAAATCA
1 TAAAAATTA
15309971 TAAAAATTTA
1 TAAAAA-TTA
*
15309981 TAAATATTA
1 TAAAAATTA
15309990 TAAAAA--A
1 TAAAAATTA
15309997 T-AAAATTCA
1 TAAAAATT-A
*
15310006 -AATAAATTTT
1 TAA-AAA-TTA
15310016 TAAAAATTA
1 TAAAAATTA
15310025 T-AAAATTA
1 TAAAAATTA
15310033 GTAAAA
1 -TAAAA
15310039 TATATTTTAA
Statistics
Matches: 88, Mismatches: 9, Indels: 30
0.69 0.07 0.24
Matches are distributed among these distances:
6 4 0.05
7 7 0.08
8 14 0.16
9 25 0.28
10 33 0.38
11 5 0.06
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:15310000 original size:35 final size:34
Alignment explanation
Indices: 15309927--15310029 Score: 102
Period size: 35 Copynumber: 2.9 Consensus size: 34
15309917 TAAAAATTAT
* *
15309927 TAAAAAT-AAAAAAATTATAAAT-TGATATAAATATA
1 TAAAAATCAAAAAATTTATAAATAT--TATAAA-AAA
15309962 TAAAAATCATAAAAATTTATAAATATTATAAAAAA
1 TAAAAATCA-AAAAATTTATAAATATTATAAAAAA
* * *
15309997 TAAAATTCAAATAAATTTTTAAAAATTATAAAA
1 TAAAAATCAAA-AAATTTATAAATATTATAAAA
15310030 TTAGTAAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
34 2 0.03
35 36 0.61
36 7 0.12
37 13 0.22
38 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (34 bp):
TAAAAATCAAAAAATTTATAAATATTATAAAAAA
Found at i:15311113 original size:26 final size:22
Alignment explanation
Indices: 15311061--15311104 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
15311051 TATTATAGAG
15311061 TTAAATTAATTCATGGTCCAAT
1 TTAAATTAATTCATGGTCCAAT
15311083 TTAAATTAATTCATGGTCCAAT
1 TTAAATTAATTCATGGTCCAAT
15311105 CATTTTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (22 bp):
TTAAATTAATTCATGGTCCAAT
Found at i:15318930 original size:10 final size:9
Alignment explanation
Indices: 15318901--15319009 Score: 71
Period size: 10 Copynumber: 11.7 Consensus size: 9
15318891 ATTTTATTCA
15318901 TTTTATAAT
1 TTTTATAAT
* *
15318910 TTATAAGAAT
1 TT-TTATAAT
15318920 TTTTATTAAT
1 TTTTA-TAAT
15318930 TTTTATAAGT
1 TTTTATAA-T
15318940 TTTTATAATT
1 TTTTATAA-T
15318950 TTTTATAAT
1 TTTTATAAT
* *
15318959 TATTGTAAGT
1 TTTTATAA-T
* *
15318969 TTATGTCAA-
1 TTTTAT-AAT
15318978 TTTTACT-AT
1 TTTTA-TAAT
*
15318987 TTTTA-ATT
1 TTTTATAAT
15318995 TTTTATAAT
1 TTTTATAAT
15319004 TTTTAT
1 TTTTAT
15319010 GAGAAAATAC
Statistics
Matches: 78, Mismatches: 13, Indels: 18
0.72 0.12 0.17
Matches are distributed among these distances:
8 7 0.09
9 30 0.38
10 39 0.50
11 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:15319008 original size:9 final size:9
Alignment explanation
Indices: 15318800--15319009 Score: 87
Period size: 9 Copynumber: 22.8 Consensus size: 9
15318790 GGTTTAAATT
15318800 TTTTTATAA
1 TTTTTATAA
15318809 --TTTATAA
1 TTTTTATAA
**
15318816 TTTTCCTAA
1 TTTTTATAA
15318825 TTTATTATAA
1 TTT-TTATAA
* *
15318835 TTTTGAT-G
1 TTTTTATAA
15318843 TTATTTATAA
1 TT-TTTATAA
15318853 GTTTTTATGAA
1 -TTTTTAT-AA
*
15318864 TTCTTATAA
1 TTTTTATAA
**
15318873 AATTTA-AA
1 TTTTTATAA
*
15318881 TATTGTAT-A
1 T-TTTTATAA
*
15318890 TATTTTATTCA
1 T-TTTTA-TAA
15318901 -TTTTATAA
1 TTTTTATAA
* *
15318909 TTTATAAGAA
1 TTT-TTATAA
15318919 TTTTTATTAA
1 TTTTTA-TAA
15318929 TTTTTATAA
1 TTTTTATAA
15318938 GTTTTTATAA
1 -TTTTTATAA
15318948 TTTTTTATAA
1 -TTTTTATAA
* *
15318958 TTATTGTAA
1 TTTTTATAA
* *
15318967 GTTTATGTCAA
1 -TTTTTAT-AA
15318978 -TTTTACT-A
1 TTTTTA-TAA
*
15318986 TTTTTA-AT
1 TTTTTATAA
15318994 TTTTTATAA
1 TTTTTATAA
15319003 TTTTTAT
1 TTTTTAT
15319010 GAGAAAATAC
Statistics
Matches: 150, Mismatches: 30, Indels: 42
0.68 0.14 0.19
Matches are distributed among these distances:
7 7 0.05
8 13 0.09
9 65 0.43
10 58 0.39
11 7 0.05
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:15319535 original size:18 final size:18
Alignment explanation
Indices: 15319499--15319536 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
15319489 TGAGTTTTAC
*
15319499 AATTCAAATACTTCGAAT
1 AATTCAAATACTTCAAAT
15319517 AATTCAAATAACTT-AAAT
1 AATTCAAAT-ACTTCAAAT
15319535 AA
1 AA
15319537 CATATTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.32
Consensus pattern (18 bp):
AATTCAAATACTTCAAAT
Found at i:15319662 original size:19 final size:20
Alignment explanation
Indices: 15319619--15319672 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
15319609 CAACCAAAAT
15319619 AATTCAAAATAATTT-TCAAA
1 AATTCAAAAT-ATTTATCAAA
*
15319639 TATTCAAAATATTTAT-AAA
1 AATTCAAAATATTTATCAAA
15319658 AATTCCAAAAT-TTTA
1 AATT-CAAAATATTTA
15319673 AATTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTCAAAATATTTATCAAA
Found at i:15319712 original size:10 final size:9
Alignment explanation
Indices: 15319697--15319750 Score: 56
Period size: 11 Copynumber: 5.6 Consensus size: 9
15319687 ATATGAAAAA
15319697 TAAAAAATT
1 TAAAAAATT
15319706 CTAAAAAATT
1 -TAAAAAATT
15319716 T-AAAAATGT
1 TAAAAAAT-T
15319725 ATAAAAAATGTT
1 -TAAAAAA--TT
15319737 TAAAAAATT
1 TAAAAAATT
15319746 TAAAA
1 TAAAA
15319751 TATAAAACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
8 6 0.15
9 9 0.23
10 10 0.26
11 12 0.31
12 1 0.03
13 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (9 bp):
TAAAAAATT
Found at i:15320853 original size:16 final size:16
Alignment explanation
Indices: 15320831--15320899 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
15320821 TTTGGTTCGC
15320831 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
15320847 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15320863 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
15320880 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15320896 TGTA
1 TGTA
15320900 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:15320877 original size:33 final size:32
Alignment explanation
Indices: 15320831--15320899 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
15320821 TTTGGTTCGC
15320831 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
15320863 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
15320896 TGTA
1 TGTA
15320900 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:15320968 original size:44 final size:45
Alignment explanation
Indices: 15320880--15320970 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
15320870 GGATTAGAGG
* * * *
15320880 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGATTGAA
***
15320925 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGATTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGATTGAA
15320969 TG
1 TG
15320971 GAATAGAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 18 0.46
45 21 0.54
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGATTGAA
Found at i:15321156 original size:18 final size:17
Alignment explanation
Indices: 15321128--15321169 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
15321118 AACATAATTA
15321128 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
15321142 TTAATTAAAATATATAAT
1 TT-ATTAAAATATATAAT
15321160 TTATTAAAAT
1 TTATTAAAAT
15321170 TCTTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.08
15 3 0.12
16 8 0.33
17 8 0.33
18 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:15321264 original size:120 final size:120
Alignment explanation
Indices: 15321118--15321739 Score: 1172
Period size: 120 Copynumber: 5.2 Consensus size: 120
15321108 ATCATATTTA
* **
15321118 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATTAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
15321183 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* **
15321238 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
15321303 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
15321358 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
15321423 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
15321478 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
15321543 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
15321598 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
15321663 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
15321718 AACATAATTATTATTAAATATA
1 AACATAATTATTATTAAATATA
15321740 AAACTTGAAA
Statistics
Matches: 494, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 494 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:15326092 original size:26 final size:26
Alignment explanation
Indices: 15326062--15326112 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15326052 CCGTAAAATA
15326062 CTGCAGCTAATACCAATGACAAAAAC
1 CTGCAGCTAATACCAATGACAAAAAC
*
15326088 CTGCAGCTAATATCAATGACAAAAA
1 CTGCAGCTAATACCAATGACAAAAA
15326113 TAAATGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.18
Consensus pattern (26 bp):
CTGCAGCTAATACCAATGACAAAAAC
Found at i:15327096 original size:23 final size:23
Alignment explanation
Indices: 15327051--15327096 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
15327041 ATAAAAAATC
*
15327051 TATTTAAAAAAAAGGTCAAATTT
1 TATTTAAAAAAAAGGTAAAATTT
*
15327074 TATTTAAAATAAAGG-AAATATTT
1 TATTTAAAAAAAAGGTAAA-ATTT
15327097 CCACTTTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (23 bp):
TATTTAAAAAAAAGGTAAAATTT
Found at i:15329927 original size:5 final size:5
Alignment explanation
Indices: 15329910--15329946 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
15329900 AAAAATGGTA
15329910 GGCCC GAGCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
1 GGCCC G-GCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
15329947 ATCATATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.03, C:0.57, G:0.41, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:15330005 original size:24 final size:25
Alignment explanation
Indices: 15329978--15330033 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
15329968 CTTTTTTTAT
*
15329978 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
15330002 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
15330027 -AAATAAA
1 TAAATAAA
15330034 TAATAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:15330019 original size:25 final size:23
Alignment explanation
Indices: 15329990--15330054 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 23
15329980 AATAAAAAAC
*
15329990 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
15330015 TTTAAAACATAAAAATAAATA-A
1 TTTAAAACATAAAAATAAATACA
15330037 --TAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
15330055 AATAATGGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 7 0.18
22 1 0.03
23 5 0.13
24 4 0.10
25 11 0.28
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:15333780 original size:13 final size:13
Alignment explanation
Indices: 15333744--15333781 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
15333734 AACCCTAATA
*
15333744 AAAGAGAAAAACT
1 AAAGAGAAAATCT
*
15333757 AAAGACAAAATCT
1 AAAGAGAAAATCT
15333770 AAAGAGAAAATC
1 AAAGAGAAAATC
15333782 ATACAAGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.66, C:0.11, G:0.13, T:0.11
Consensus pattern (13 bp):
AAAGAGAAAATCT
Found at i:15337101 original size:26 final size:26
Alignment explanation
Indices: 15337072--15337123 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15337062 AAATTACTAT
15337072 GGTTTCCTTGGGAGTGATATAGAATC
1 GGTTTCCTTGGGAGTGATATAGAATC
15337098 GGTTTCCTTGGGAGTGATATAGAATC
1 GGTTTCCTTGGGAGTGATATAGAATC
15337124 ATTCCCAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.35
Consensus pattern (26 bp):
GGTTTCCTTGGGAGTGATATAGAATC
Found at i:15340105 original size:18 final size:18
Alignment explanation
Indices: 15340082--15340116 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15340072 CTCATGGATC
15340082 TGATAAACAAAATAAACT
1 TGATAAACAAAATAAACT
* *
15340100 TGATAAAGATAATAAAC
1 TGATAAACAAAATAAAC
15340117 GTAAAGAGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.23
Consensus pattern (18 bp):
TGATAAACAAAATAAACT
Found at i:15341705 original size:26 final size:26
Alignment explanation
Indices: 15341676--15341742 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
15341666 CTTTTTAGAT
* *
15341676 TTAGTTTTTAGTTTTTTTTTCTTTTC
1 TTAGTTTTTAGTTTTTATTTCTATTC
* *
15341702 TTAGGTTTTAGATTTTATTTCTATTC
1 TTAGTTTTTAGTTTTTATTTCTATTC
*
15341728 TT-GTTATTTACTTTT
1 TTAGTT-TTTAGTTTT
15341743 ATGGAGAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
25 2 0.06
26 31 0.94
ACGTcount: A:0.13, C:0.07, G:0.09, T:0.70
Consensus pattern (26 bp):
TTAGTTTTTAGTTTTTATTTCTATTC
Found at i:15354211 original size:30 final size:30
Alignment explanation
Indices: 15354177--15354237 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
15354167 CATTTAATAC
15354177 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
15354207 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
15354237 A
1 A
15354238 GGCTTGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:15358159 original size:37 final size:37
Alignment explanation
Indices: 15358109--15358188 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
15358099 CTTATTACGA
* *
15358109 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
15358146 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
15358183 GGTCTT
1 AGTCTT
15358189 TATAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:15358378 original size:47 final size:47
Alignment explanation
Indices: 15358319--15358851 Score: 766
Period size: 47 Copynumber: 11.4 Consensus size: 47
15358309 TATCACATTT
* * *
15358319 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15358364 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
15358411 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15358458 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15358505 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
15358552 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
15358599 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * * *
15358646 ATATACGTGTTCACTTTCATCACATTGGTCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
15358693 ATATACGTGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15358740 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
15358787 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
15358835 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
15358852 TATTCAATTA
Statistics
Matches: 443, Mismatches: 41, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 417 0.94
48 18 0.04
49 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.33
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:15358668 original size:25 final size:25
Alignment explanation
Indices: 15358639--15358716 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
15358629 ATTCGGCCTT
15358639 ATCACACATATACGTGTTCACTTTC
1 ATCACACATATACGTGTTCACTTTC
* * * *
15358664 AT--CACAT-T-GGTCATTCGGCCTT-
1 ATCACACATATACGT-GTTC-ACTTTC
15358686 ATCACACATATACGTGTTCACTTTC
1 ATCACACATATACGTGTTCACTTTC
15358711 ATCACA
1 ATCACA
15358717 TTGGCCATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
21 2 0.05
22 6 0.16
23 8 0.21
24 8 0.21
25 12 0.32
26 2 0.05
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (25 bp):
ATCACACATATACGTGTTCACTTTC
Found at i:15363205 original size:40 final size:40
Alignment explanation
Indices: 15363148--15363530 Score: 594
Period size: 40 Copynumber: 9.6 Consensus size: 40
15363138 CCAGCATGAT
* *
15363148 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
15363188 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15363228 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
15363268 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15363308 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15363348 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15363388 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
15363428 TGCTCTTCGGGGCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATC-ACTAGCACGAA
* * *
15363469 TGC-CTT-TGGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
15363509 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
15363531 CATCATTCGA
Statistics
Matches: 319, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 295 0.92
41 22 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:15365378 original size:37 final size:37
Alignment explanation
Indices: 15365328--15365407 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
15365318 CTTATTACGA
* *
15365328 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
15365365 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
15365402 GGTCTT
1 AGTCTT
15365408 TATAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:15365597 original size:47 final size:47
Alignment explanation
Indices: 15365526--15366023 Score: 703
Period size: 47 Copynumber: 10.6 Consensus size: 47
15365516 CCCTTCGGGA
** * *
15365526 CTTATCACATTTATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * * *
15365573 CTTATCTCACATACACATGCTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
15365620 CTTATCACACATACACCTGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
15365667 TTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
15365714 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * * * *
15365761 CCTATCTCATATATGCATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
15365808 CTTATCACACATATACGTGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
15365855 CTTATCACACATATACGTGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
15365902 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
15365949 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
15365996 CCTATTCACACATATACACT-TTCACATT
1 CTTA-TCACACATATACA-TGTTCACATT
15366024 TATTCAATTA
Statistics
Matches: 407, Mismatches: 41, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 387 0.95
48 18 0.04
49 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:15370365 original size:40 final size:40
Alignment explanation
Indices: 15370308--15370690 Score: 594
Period size: 40 Copynumber: 9.6 Consensus size: 40
15370298 CCAGCATGAT
* *
15370308 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
15370348 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15370388 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
15370428 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15370468 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15370508 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
15370548 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
15370588 TGCTCTTCGGGGCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATC-ACTAGCACGAA
* * *
15370629 TGC-CTT-TGGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
15370669 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
15370691 CATCATTCGA
Statistics
Matches: 319, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 295 0.92
41 22 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:15372534 original size:37 final size:37
Alignment explanation
Indices: 15372484--15372563 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
15372474 CTTATTACGA
* *
15372484 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
15372521 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
15372558 GGTCTT
1 AGTCTT
15372564 TATAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:15372753 original size:47 final size:47
Alignment explanation
Indices: 15372694--15373179 Score: 708
Period size: 47 Copynumber: 10.4 Consensus size: 47
15372684 TATCACATTT
* * *
15372694 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15372739 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
15372786 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15372833 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15372880 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
15372927 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
15372974 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
15373021 ATATACGTGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
15373068 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
15373115 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
15373163 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
15373180 TATTCAATTA
Statistics
Matches: 398, Mismatches: 39, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 372 0.93
48 18 0.05
49 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:15387946 original size:11 final size:11
Alignment explanation
Indices: 15387930--15387954 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15387920 TTTTGTCCCC
15387930 TTTTGGCTCAT
1 TTTTGGCTCAT
15387941 TTTTGGCTCAT
1 TTTTGGCTCAT
15387952 TTT
1 TTT
15387955 AACTCTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTTGGCTCAT
Found at i:15390841 original size:15 final size:15
Alignment explanation
Indices: 15390821--15390853 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15390811 AAATATATAT
15390821 TTTATA-AAAAATTAA
1 TTTATATAAAAA-TAA
15390836 TTTATATAAAAATAA
1 TTTATATAAAAATAA
15390851 TTT
1 TTT
15390854 GATTCCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTATATAAAAATAA
Found at i:15392986 original size:20 final size:20
Alignment explanation
Indices: 15392943--15393006 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
15392933 AAAATTTAAG
* *
15392943 ATTTTTATGCTTTTTTTT-C
1 ATTTTTATGATTTTTTTTAT
*
15392962 A-TTTTA-GAATTTTTTTTGT
1 ATTTTTATG-ATTTTTTTTAT
15392981 ATTTTTATGATTTTTTTTAT
1 ATTTTTATGATTTTTTTTAT
15393001 ATTTTT
1 ATTTTT
15393007 TAAGGAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.03
18 13 0.34
19 2 0.05
20 21 0.55
21 1 0.03
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.73
Consensus pattern (20 bp):
ATTTTTATGATTTTTTTTAT
Found at i:15393978 original size:16 final size:17
Alignment explanation
Indices: 15393959--15393991 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15393949 ATAATTACTT
15393959 TTTAT-TATATTTTTAA
1 TTTATGTATATTTTTAA
*
15393975 TTTATGTATTTTTTTAA
1 TTTATGTATATTTTTAA
15393992 GAATTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTATGTATATTTTTAA
Found at i:15397224 original size:100 final size:101
Alignment explanation
Indices: 15396863--15397287 Score: 593
Period size: 100 Copynumber: 4.2 Consensus size: 101
15396853 TGGTTTAATG
* * * * * *
15396863 TTTTTTATAAATGTAATTTTTTTATAATTATTTTAAAATTTTTTTGTTAGTAATTTATGATTATG
1 TTTTTTATTAATGTAATTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGG
* * *
15396928 TTGTAATTTGTTTGTGTTTTAGTTTAGTGTTTTGTGA
66 TTATAAATTGTTAGTG-TTTAGTTTAGTGTTTTGTGA
* *** *
15396965 ATTTTTATTAATGTAATTTTAAAAAAAAAATTATTTTATAGTTATTTTGTTAATAATTTATGATT
1 TTTTTTATTAATGTAATTTT---TTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATT
*
15397030 AGGTTATAAATTGTT-CTGTTTAGTTTAGTGTTTTGTGA
63 AGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
*
15397068 TTTTTTTATTAATGTAAATTTTTTTTAAAAATATTTTATAGTTATTTTGTTAGTAATTTATGATT
1 -TTTTTTATTAATGT-AA-TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATT
* *
15397133 AGGTTATAAATTGTTAGTGTTTAGTTTTGTATTTTGTGA
63 AGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
15397172 -TTTTTATTAATGTAATTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGG
1 TTTTTTATTAATGTAATTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGG
* *
15397236 TTATAAATTGTTAGTGTTTAGTTTACTGTTTTTTGA
66 TTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
15397272 TTTTTTATTAATGTAA
1 TTTTTTATTAATGTAA
15397288 AATTTTTATA
Statistics
Matches: 287, Mismatches: 28, Indels: 17
0.86 0.08 0.05
Matches are distributed among these distances:
100 80 0.28
101 17 0.06
102 31 0.11
103 72 0.25
104 35 0.12
105 48 0.17
106 4 0.01
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.58
Consensus pattern (101 bp):
TTTTTTATTAATGTAATTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGG
TTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
Found at i:15397309 original size:203 final size:205
Alignment explanation
Indices: 15396863--15397317 Score: 616
Period size: 203 Copynumber: 2.2 Consensus size: 205
15396853 TGGTTTAATG
* * * * *
15396863 TTTTTTATAAATGTAATTTTTTTATAATT-ATTTTAAAATTTTTTTGTTAGTAATTTATGATTAT
1 TTTTTTATTAATGTAAATTTTTTATAATTAATTTTATAATTATTTTGTTAGTAATTTATGATTAG
* * * *
15396927 GTTGTAATTTGTTTGTGTTTTAGTTTAGTGTTTTGTGAATTTTTATTAATGTAATTTTAAAAAAA
66 GTTATAAATTGTTAGTGTTTTAGTTTAGTATTTTGTGAATTTTTATTAATGTAATTTT--AAAAA
15396992 AAATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGGTTATAAATTGTTCTGTTTAGTTTA
129 AAATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGGTTATAAATTGTTCTGTTTAGTTTA
*
15397057 GTGTTTTGTGAT
194 CTGTTTTGTGAT
* ** *
15397069 TTTTTTATTAATGTAAATTTTTTTTAAAAATATTTTATAGTTATTTTGTTAGTAATTTATGATTA
1 TTTTTTATTAATGTAAATTTTTTATAATTA-ATTTTATAATTATTTTGTTAGTAATTTATGATTA
* ***
15397134 GGTTATAAATTGTTAGTG-TTTAGTTTTGTATTTTGTG-ATTTTTATTAATGTAATTTT-TTTAA
65 GGTTATAAATTGTTAGTGTTTTAGTTTAGTATTTTGTGAATTTTTATTAATGTAATTTTAAAAAA
* *
15397196 AATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTTTA
130 AATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGGTTATAAATTGTT-CTGTTTAGTTTA
*
15397261 CTGTTTTTTGA-
194 CTGTTTTGTGAT
* *
15397272 TTTTTTATTAATGTAAAATTTTTATAATGTAATTTTAT-TTTATTTT
1 TTTTTTATTAATGTAAATTTTTTATAAT-TAATTTTATAATTATTTT
15397318 TATTTATTTG
Statistics
Matches: 219, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
202 7 0.03
203 85 0.39
204 21 0.10
206 44 0.20
207 17 0.08
208 45 0.21
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (205 bp):
TTTTTTATTAATGTAAATTTTTTATAATTAATTTTATAATTATTTTGTTAGTAATTTATGATTAG
GTTATAAATTGTTAGTGTTTTAGTTTAGTATTTTGTGAATTTTTATTAATGTAATTTTAAAAAAA
ATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGGTTATAAATTGTTCTGTTTAGTTTACT
GTTTTGTGAT
Found at i:15403024 original size:18 final size:17
Alignment explanation
Indices: 15402989--15403024 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
15402979 AACACCTTAT
*
15402989 CTTTCTTTTTTGTTCTC
1 CTTTCTTTTTTCTTCTC
15403006 CTTTCTTTCTTTCTTCTC
1 CTTTCTTT-TTTCTTCTC
15403024 C
1 C
15403025 CTATCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.67
Consensus pattern (17 bp):
CTTTCTTTTTTCTTCTC
Found at i:15408106 original size:17 final size:17
Alignment explanation
Indices: 15408047--15408106 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
15408037 TAATAAATTT
15408047 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
15408066 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
15408080 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
15408098 AAAATATAA
1 AAAATATAA
15408107 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:15408642 original size:17 final size:17
Alignment explanation
Indices: 15408589--15408686 Score: 142
Period size: 18 Copynumber: 5.5 Consensus size: 17
15408579 AATCATATCT
15408589 TCTAAGATTGTATATCATA
1 TCTAAGATTG--TATCATA
*
15408608 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
15408626 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
15408643 TCTAAGATTGTAATCATA
1 TCTAAGATTGT-ATCATA
*
15408661 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
15408678 TCTAAGATT
1 TCTAAGATT
15408687 ACATATCATT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:15408647 original size:35 final size:35
Alignment explanation
Indices: 15408589--15408695 Score: 160
Period size: 35 Copynumber: 3.0 Consensus size: 35
15408579 AATCATATCT
15408589 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
15408626 TCTAAGATTGTATCATATCTAAGATTGTAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
15408661 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
15408696 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 50 0.77
36 5 0.08
37 10 0.15
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:15409290 original size:83 final size:83
Alignment explanation
Indices: 15409080--15409432 Score: 564
Period size: 83 Copynumber: 4.2 Consensus size: 83
15409070 TTCGATTTGT
* * * *
15409080 AAGGATG-TCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCTTGG
1 AAGGATGCT-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
*
15409144 ACTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
* * *
15409163 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAAGATTTGAGAGCCATGTCTGCAAGGTCCTCG
1 AAGGATG-CTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
15409228 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
15409247 AAGGATGCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
15409312 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
15409330 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
1 AAGGATGCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
15409395 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
15409413 AAGGATGCCAAACCATCTTG
1 AAGGATGCTAAACCATCTTG
15409433 GATCTGCTTC
Statistics
Matches: 254, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
83 180 0.71
84 73 0.29
85 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (83 bp):
AAGGATGCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:15409833 original size:119 final size:119
Alignment explanation
Indices: 15409356--15409830 Score: 806
Period size: 119 Copynumber: 4.0 Consensus size: 119
15409346 CTTGAGTCTG
* * * * * * *
15409356 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
15409421 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
15409475 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
15409540 CAAATCATCTTAGATATGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
15409594 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
15409659 CAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
15409713 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
15409778 TAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
15409831 CTTCGATCTG
Statistics
Matches: 336, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 336 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:15409873 original size:44 final size:43
Alignment explanation
Indices: 15409824--15410130 Score: 161
Period size: 44 Copynumber: 7.0 Consensus size: 43
15409814 AAGGTTAGAT
15409824 CTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAA
1 CTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAA
* **
15409867 CATGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATG
1 C-TGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAA
** ** * * * ** * *
15409911 CTGAAATCTTTAATCTGCTTCGCTGTAAGCACAGCAATGTCAGAT
1 CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCA-AA
* * * * *
15409956 TTACTATCTTTGATCTGTCCCCTATAAACATAGGGATGCCAAA
1 CTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAA
* * * * **
15409999 TTTTG-TTTCTTC-AACTTGTTCCCTATAAACACATGGATGCCATG
1 --CTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAA
** * * * * * * * *
15410043 CTGAAATCTTCAATCTACTTCGCTGTAAGCACAGGAATGTCAGAT
1 CTGCTATCTTCGATCT-GTTCCCTATAAACACAGGGATGCCA-AA
* * * *
15410088 CTACTATCTTTGATATGTTCCCTATAAACATAGGGATGCCAAA
1 CTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAA
15410131 TCTTGTTTCT
Statistics
Matches: 187, Mismatches: 65, Indels: 24
0.68 0.24 0.09
Matches are distributed among these distances:
42 2 0.01
43 22 0.12
44 139 0.74
45 24 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (43 bp):
CTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAA
Found at i:15409991 original size:132 final size:132
Alignment explanation
Indices: 15409820--15410141 Score: 493
Period size: 132 Copynumber: 2.4 Consensus size: 132
15409810 TCTGAAGGTT
* * *
15409820 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAA-CATGCTATCTTCAACTT
1 AGATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAAATCATG-TATCTTCAACTT
* *
15409884 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTAATCTGCTTCGCTGTAAGCACAGCAAT
65 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTACTTCGCTGTAAGCACAGCAAT
15409949 GTC
130 GTC
* * ** *
15409952 AGATTTACTATCTTTGATCTGTCCCCTATAAACATAGGGATGCCAAATTTTGTTTCTTCAACTTG
1 AGATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAAATCATGTATCTTCAACTTG
* *
15410017 TTCCCTATAAACACATGGATGCCATGCTGAAATCTTCAATCTACTTCGCTGTAAGCACAGGAATG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTACTTCGCTGTAAGCACAGCAATG
15410082 TC
131 TC
* * *
15410084 AGATCTACTATCTTTGATATGTTCCCTATAAACATAGGGATGCCAAATCTTGTTTCTT
1 AGATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAAATCATGTATCTT
15410142 TGATCTACAT
Statistics
Matches: 173, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 171 0.99
133 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (132 bp):
AGATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAAATCATGTATCTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTACTTCGCTGTAAGCACAGCAATG
TC
Done.