Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 53 of 373
Found at i:15792579 original size:22 final size:22
Alignment explanation
Indices: 15792552--15792626 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
15792542 GTTCACATTC
15792552 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
15792574 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
15792598 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
15792621 ATCACA
1 ATCACA
15792627 CATACGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:15795817 original size:3 final size:3
Alignment explanation
Indices: 15795804--15795843 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
15795794 AAATATAAGA
15795804 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15795844 CCGCGTAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15796045 original size:20 final size:19
Alignment explanation
Indices: 15796020--15796061 Score: 75
Period size: 20 Copynumber: 2.2 Consensus size: 19
15796010 GCAAAAAGAG
15796020 AAAAATAATAATAAATAAAT
1 AAAAATAATAAT-AATAAAT
15796040 AAAAATAATAATAATAAAT
1 AAAAATAATAATAATAAAT
15796059 AAA
1 AAA
15796062 TAAATTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAATAATAATAATAAAT
Found at i:15797509 original size:40 final size:40
Alignment explanation
Indices: 15797465--15797616 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
15797455 GTGTTTTTAG
*
15797465 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * **
15797505 TCTGCTCCACTATTGCTTAGGGAAATAAGATCTGTGGTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGCGA
*
15797547 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
15797587 TCTACTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
15797617 TTGTAATCTT
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 57 0.60
41 4 0.04
42 29 0.31
43 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:15797560 original size:82 final size:83
Alignment explanation
Indices: 15797449--15797617 Score: 268
Period size: 82 Copynumber: 2.0 Consensus size: 83
15797439 CATGGGGATG
* * * *
15797449 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGATCTGCTCCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
15797514 CTATTGCTTAGGGAAATA
66 CTACTGCTTAGGGAAATA
*
15797532 AGATCTGTGGTTTT-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGATCTACTCCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
15797596 CTACTGCTTAGGGAGATA
66 CTACTGCTTAGGGAAATA
15797614 AGAT
1 AGAT
15797618 TGTAATCTTC
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
82 67 0.85
83 12 0.15
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (83 bp):
AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
CTACTGCTTAGGGAAATA
Found at i:15797564 original size:42 final size:42
Alignment explanation
Indices: 15797449--15797617 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 42
15797439 CATGGGGATG
* * *
15797449 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATA
1 AGATCTGTGGTTTT-GTCTGCTCCACTACTGCTTAGGGAGATA
* ** * *
15797492 AGA-CT-T-GATGCGATCTGCTCCACTATTGCTTAGGGAAATA
1 AGATCTGTGGTTTTG-TCTGCTCCACTACTGCTTAGGGAGATA
15797532 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATA
1 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATA
** ** *
15797574 AGA-CT-T-AATGCGATCTACTCCACTACTGCTTAGGGAGATA
1 AGATCTGTGGTTTTG-TCTGCTCCACTACTGCTTAGGGAGATA
15797614 AGAT
1 AGAT
15797618 TGTAATCTTC
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
39 3 0.03
40 58 0.57
41 5 0.05
42 30 0.29
43 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATA
Found at i:15797825 original size:132 final size:131
Alignment explanation
Indices: 15797588--15797984 Score: 403
Period size: 134 Copynumber: 3.0 Consensus size: 131
15797578 TTAATGCGAT
* * ** *
15797588 CTACTCCACTACTGCTTAGGGAGATAAGAT-TGTAATCTTCGATCTATTCCACTG--TTTCCCAG
1 CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAT-ACAG
** * * * *
15797650 GGA-AGTAGAACTACCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTC
65 GGAGA-TAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGTCTTC
*
15797714 AAC
129 GAC
15797717 CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAG
1 CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCC-AATACAG
* * * * *
15797782 GGAGATAGAGTTATCGGCTTCAATGTATTCCACTATAGTCAGGGAGGTAAAATCTGACATCTTTG
65 GGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGTCTTCG
15797847 AC
130 AC
* * * * * ** *
15797849 CTGCT--TC-GTTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCAA
1 CTACTCCACTATTG-C---T-TAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-CCAA
* * * *
15797911 TACAGGGAGATAGAGTTATCGGCTTCAACGTACTCCACTGTAGTTAGGGAGGTAAAGTTTGCCGT
60 TACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGT
15797976 CTTCGAC
125 CTTCGAC
15797983 CT
1 CT
15797985 GCAATCTATT
Statistics
Matches: 223, Mismatches: 34, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
129 32 0.14
130 25 0.11
132 60 0.27
133 3 0.01
134 101 0.45
135 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (131 bp):
CTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAATACAGG
GAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCGTCTTCGA
C
Found at i:15798340 original size:132 final size:131
Alignment explanation
Indices: 15798033--15799832 Score: 2567
Period size: 132 Copynumber: 13.6 Consensus size: 131
15798023 TGTTTTTTCA
* ** * * *
15798033 ATCCACTTCCTACCAGTATAGGAAGACCGGAACTGTTATCTTTGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
* * * * *
15798098 GAAGACAAGATCTGCTTTCTTCGGTCTAC-TC-CCTACCAATATAGGAAGACAAGACCTAGTATC
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC-ACCAATATGGGAAGACAAGATCT-GCATC
*
15798161 TTTG
128 TTCG
* * * * * * * * *
15798165 CTCTACTT-C-ACGCTAATA-CGTGAAGACAAGATCTGATTTCTTCGATCTACTTCGCCACCAAT
1 ATCCACTTCCTAC-C-AATATAG-GAAGATAGGATCTGCTATCTTCGATCTACTTC-ACGCCAAT
* *
15798227 -ATGGAAAGATAAGATCTGCTTTCCT-CGATCTACTTCCCCACC-ATATGGGAAGACAAGATCTG
62 AAT-G-AAGACAAGATCTGCTTT-CTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTG
15798289 CATCTTCG
124 CATCTTCG
* * *
15798297 ATCCACTTCCCACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTTCTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
15798362 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
15798427 GG
130 CG
* * * * *
15798429 ATCTACTTCCTATCAATATAGGAAGATAGGACCTACTATCTTCGATCTACTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
*
15798494 GAAGACAAGATCTGCTTTCTGTGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15798559 CG
130 CG
* * *
15798561 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTTCTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
*
15798626 AAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15798691 CG
130 CG
*
15798693 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTA-CATTCGATCTTCTTCACGCCAATACA
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATC-TTCGATCTACTTCACGCCAATA-A
* * * * *
15798757 TGAAAACAAGATCTACTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCGTCG
64 TGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
15798822 TCG
129 TCG
* *
15798825 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTTCTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
* * * * *
15798890 GAAGACAAGATCTCCTTTCTGCGATCTACTACGCCACCAGTATGGGAAGACAAGATCTGCGTCGT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15798955 CG
130 CG
* *
15798957 ATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
15799022 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15799087 CG
130 CG
* * *
15799089 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTTCTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
*
15799154 GAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15799219 CG
130 CG
* *
15799221 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTTCTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
* * * *
15799286 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACTAGTATGGGAAGACAAGATCTGCGTCGT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15799351 CG
130 CG
*
15799353 ATCCACTTCCTACCAATATAGGAAGATAGGA-CATGCTATCTTCGATCTACTTCACGCTAATACA
1 ATCCACTTCCTACCAATATAGGAAGATAGGATC-TGCTATCTTCGATCTACTTCACGCCAATA-A
* * *
15799417 TGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCGTCG
64 TGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
15799482 TCG
129 TCG
*
15799485 ATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
* * * *
15799550 GAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACCAGATCTGCGTCGT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15799615 CG
130 CG
* *
15799617 ATCCACTTCCTACCAATATAGGAAGATAGAACCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
** * * * *
15799682 GAAGACAAGATCTATTTTCTGCGATCTGCTTCGCCACCAATATGGGAAGACCAGATCTGCGTCGT
65 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
15799747 CG
130 CG
* * *
15799749 ATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTTGATTTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATA-AT
*
15799814 GAAGACAAGATCTACTTTC
65 GAAGACAAGATCTGCTTTC
15799833 CGCTATCTCA
Statistics
Matches: 1554, Mismatches: 94, Indels: 40
0.92 0.06 0.02
Matches are distributed among these distances:
130 4 0.00
131 45 0.03
132 1441 0.93
133 53 0.03
134 9 0.01
135 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (131 bp):
ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATAATG
AAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTC
G
Found at i:15805429 original size:132 final size:132
Alignment explanation
Indices: 15805192--15806998 Score: 2799
Period size: 132 Copynumber: 13.7 Consensus size: 132
15805182 GGATGGATTG
* *
15805192 AGATCGCGGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
15805257 ATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTGGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15805322 GT
131 GT
* *
15805324 AGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
15805389 ATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTGGT-TTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15805453 GT
131 GT
*
15805455 AGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
15805520 ATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15805585 GT
131 GT
*
15805587 AGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* *
15805652 ATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15805717 GT
131 GT
* * *
15805719 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCAGATCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
15805784 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15805849 GT
131 GT
* * * * * *
15805851 AGATCGTAGAAAGCAGATCTTGTCTTCATGT-TTGGCATGAAGAATATCGAAGGTAGCAGATCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
15805915 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15805980 GT
131 GT
*
15805982 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
15806047 ATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15806112 GT
131 GT
15806114 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
15806179 ATCTTCCTATATTGGTAGGACGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15806244 GT
131 GT
* * * *
15806246 AGGTCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCAGATCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
15806311 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15806376 GT
131 GT
* * *
15806378 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAA-TAAGATCGAAGGTAGCAGATCC
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT-AGATCGAAGATAGCAGGTCC
*
15806442 TATTTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
65 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
15806507 AGT
130 AGT
*
15806510 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* * *
15806575 ATCTTCCTATATTGATAGGAAGTAGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15806640 GT
131 GT
* * *
15806642 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCAGATCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
*
15806707 ATCTTCCTATATTGGTGGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
15806772 GT
131 GT
* * * * * *
15806774 AGATCG-AGGAAAGCAGATCTTATCTTTCCA--TATTGGTGGCGAAGTAGATCGAAGAAATCAGA
1 AGATCGCA-GAAAGCAGATCTTGTC-TT-CATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGG
* * * * * * * * *
15806836 TCTTGTCTTCACGTAT-TAGCGT--GAAGTAGAGCAAAGATACTAGGTCTTGTCTTCCTATATTG
62 TCCTATCTTC-C-TATATTG-GTAGGAAGTGGATCGAAGATGC-AGATCTTGTCTTCCCATATTG
15806898 GTAGG-G-AGT
123 GT-GGCGAAGT
* * * * * *
15806907 AGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGTTCCG
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
* *
15806972 GTCTTCCTATACTGGTAGGAAGTGGAT
66 ATCTTCCTATATTGGTAGGAAGTGGAT
15806999 TGAAAAAACA
Statistics
Matches: 1571, Mismatches: 85, Indels: 38
0.93 0.05 0.02
Matches are distributed among these distances:
130 5 0.00
131 262 0.17
132 1196 0.76
133 73 0.05
134 28 0.02
135 7 0.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (132 bp):
AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCT
ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
GT
Found at i:15806185 original size:527 final size:528
Alignment explanation
Indices: 15805192--15806998 Score: 2869
Period size: 527 Copynumber: 3.4 Consensus size: 528
15805182 GGATGGATTG
* * * *
15805192 AGATCGCGGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCT
* * *
15805257 ATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTGGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
* * * * *
15805322 GTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGATAGCAGGTC
131 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATC
* * *
15805387 CTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTGGT-TTCCCATATTGGTGGCG
196 CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
* *
15805451 AAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGG
261 AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGG
15805516 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
326 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
*
15805581 CGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
391 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
*
15805646 GGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGT
456 GGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGT
15805711 GGCGAAGT
521 GGCGAAGT
*
15805719 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCAGATCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCT
15805784 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
* * *
15805849 GTAGATCGTAGAAAGCAGATCTTGTCTTCATGT-TTGGCATGAAGAATATCGAAGGTAGCAGATC
131 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATC
15805913 CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
196 CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
15805978 AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGG
261 AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGG
15806043 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
326 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
15806108 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
391 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
* *
15806173 GGTCCTATCTTCCTATATTGGTAGGACGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGT
456 GGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGT
15806238 GGCGAAGT
521 GGCGAAGT
* *
15806246 AGGTCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCAGATCCT
1 AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCT
15806311 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
* *
15806376 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAATAAGATCGAAGGTAGCAGATC
131 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATC
*
15806441 CTATTTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
196 CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
15806506 AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGG
261 AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGG
* * * * * *
15806571 TCCTATCTTCCTATATTGATAGGAAGTAGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGG
326 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
* *
15806636 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCA
391 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
* * *
15806701 GATCCTATCTTCCTATATTGGTGGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGT
456 GGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGT
15806766 GGCGAAGT
521 GGCGAAGT
* * * * * *
15806774 AGATCG-AGGAAAGCAGATCTTATCTTTCCA--TATTGGTGGCGAAGTAGATCGAAGAAATCAGA
1 AGATCGCA-GAAAGCAGATCTTGTC-TT-CATGTATTGG-CGTGAAGAAGATCGAAGATAGCAGA
* * * * * * * * *
15806836 TCTTGTCTTCACGTAT-TAGCGT--GAAGTAGAGCAAAGATACTAGGTCTTGTCTTCCTATATTG
62 TCCTATCTTC-C-TATATTG-GTAGGAAGTGGATCGAAGATGC-AGATCTTGTCTTCCCATATTG
* * * * *
15806898 GTAGG-G-AGTAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA
123 GT-GGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGA
* * ** *
15806961 TAACAGTTCCGGTCTTCCTATACTGGTAGGAAGTGGAT
187 TAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGAT
15806999 TGAAAAAACA
Statistics
Matches: 1196, Mismatches: 73, Indels: 20
0.93 0.06 0.02
Matches are distributed among these distances:
526 69 0.06
527 594 0.50
528 374 0.31
529 125 0.10
530 27 0.02
531 7 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (528 bp):
AGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGATAGCAGATCCT
ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGATAGCAGATC
CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCG
AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGG
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
GGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGT
GGCGAAGT
Found at i:15807286 original size:134 final size:134
Alignment explanation
Indices: 15807045--15807289 Score: 409
Period size: 134 Copynumber: 1.8 Consensus size: 134
15807035 AGAATAGATT
* * *
15807045 GCAGGTCGAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAGTACGTTGAAGCCGATAACTCT
1 GCAGGTCAAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAATACATTGAAGCCGATAACTCT
*
15807110 ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAA
66 ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAA
15807175 CGAA
131 CGAA
* * * *
15807179 GCAGGTCAAAGATGTCAGATTTTACCTCCCTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 GCAGGTCAAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAATACATTGAAGCCGATAACTCT
*
15807244 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTT
66 ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTACAGATCTT
15807290 ATCTCCCTAA
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
134 102 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (134 bp):
GCAGGTCAAAGACGGCAGACTTTACCTCCCTAACTACAGTGGAATACATTGAAGCCGATAACTCT
ATCTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAA
CGAA
Found at i:15807469 original size:40 final size:40
Alignment explanation
Indices: 15807415--15807566 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
15807405 AAGATTACAA
* *
15807415 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
** *
15807455 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
* *
15807496 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
15807537 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
15807567 CTAAAAACAC
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 58 0.61
41 4 0.04
42 31 0.33
43 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:15807508 original size:82 final size:83
Alignment explanation
Indices: 15807413--15807582 Score: 270
Period size: 82 Copynumber: 2.1 Consensus size: 83
15807403 CGAAGATTAC
* * *
15807413 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
15807478 GAGCAGAC-AAAACCACA
66 GAGCAGACTAAAAACACA
* * *
15807495 GATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
15807560 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
15807578 AATCT
1 AATCT
15807583 CATCCCCATG
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 67 0.85
83 12 0.15
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:15807519 original size:42 final size:42
Alignment explanation
Indices: 15807414--15807582 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 42
15807404 GAAGATTACA
* ** **
15807414 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
*
15807455 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
* * ** *
15807496 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
* *
15807537 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAAACACAG
15807579 ATCT
1 ATCT
15807583 CATCCCCATG
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 58 0.56
41 7 0.07
42 32 0.31
43 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
Found at i:15808984 original size:10 final size:10
Alignment explanation
Indices: 15808969--15809004 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
15808959 TTCAATTTAT
15808969 TTATTTATTA
1 TTATTTATTA
15808979 TTATTT-TTA
1 TTATTTATTA
15808988 TTTATTTATTA
1 -TTATTTATTA
15808999 TTATTT
1 TTATTT
15809005 TTCTCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 3 0.12
10 18 0.75
11 3 0.12
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (10 bp):
TTATTTATTA
Found at i:15808989 original size:20 final size:20
Alignment explanation
Indices: 15808964--15809006 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
15808954 ATTCATTCAA
15808964 TTTATTTATTTATTATTATT
1 TTTATTTATTTATTATTATT
15808984 TTTATTTATTTATTATTATT
1 TTTATTTATTTATTATTATT
15809004 TTT
1 TTT
15809007 CTCTTTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTATTTATTTATTATTATT
Found at i:15809191 original size:3 final size:3
Alignment explanation
Indices: 15809185--15809215 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
15809175 TACTACGCGG
15809185 ATT ATT ATT ATT ATT ATT ATT ATT ATGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
15809216 TCTTATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:15812610 original size:40 final size:41
Alignment explanation
Indices: 15812566--15812653 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 41
15812556 TCGCACACGT
* * *
15812566 AGTGCCACATATAGCCGAAGCTAT-TCCAATTCGCACAATA
1 AGTGCCACATATAGCCGAAGCTATCTCAAAATAGCACAATA
*** *
15812606 AGTGCTTTATATAGCCGAAGCTATCTCAAAATAGCACACTA
1 AGTGCCACATATAGCCGAAGCTATCTCAAAATAGCACAATA
15812647 AGTGCCA
1 AGTGCCA
15812654 AACATAGTCG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
40 21 0.55
41 17 0.45
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (41 bp):
AGTGCCACATATAGCCGAAGCTATCTCAAAATAGCACAATA
Found at i:15814440 original size:21 final size:21
Alignment explanation
Indices: 15814408--15814463 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
15814398 ATGGCCTGCA
*
15814408 ACACGGGCGTGTCCTAGGGTC
1 ACACGGGTGTGTCCTAGGGTC
*
15814429 ACATGGGTGTGTCCTAGGGTC
1 ACACGGGTGTGTCCTAGGGTC
15814450 ACACGGGTGTGTCC
1 ACACGGGTGTGTCC
15814464 CTTGGACCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.14, C:0.25, G:0.38, T:0.23
Consensus pattern (21 bp):
ACACGGGTGTGTCCTAGGGTC
Found at i:15818441 original size:50 final size:50
Alignment explanation
Indices: 15818316--15818452 Score: 193
Period size: 50 Copynumber: 2.7 Consensus size: 50
15818306 TTCCAAATAA
* * * *
15818316 ATAGCTGAAGCTATATCAATCTCGCACACCAAGTGCCAATATATATATGT
1 ATAGCTGAAGCTATCTCAATCTCGCACACTAAGTGCAAATATATATATAT
*
15818366 ATAGCCGAAGCTATCTCAATCTCGCACACTAAGTGCAAATATATATATAT
1 ATAGCTGAAGCTATCTCAATCTCGCACACTAAGTGCAAATATATATATAT
** * *
15818416 ATAGCTGAAGCTATCTTGATTTCGCACATTAAGTGCA
1 ATAGCTGAAGCTATCTCAATCTCGCACACTAAGTGCA
15818453 CATAATTAGC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (50 bp):
ATAGCTGAAGCTATCTCAATCTCGCACACTAAGTGCAAATATATATATAT
Found at i:15818992 original size:20 final size:21
Alignment explanation
Indices: 15818953--15818993 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15818943 ACTTGTATAA
*
15818953 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACAATCAAAAT
*
15818974 CTATCATTAAA-AATCAAAAT
1 CTATCATCAAACAATCAAAAT
15818994 ACTCATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (21 bp):
CTATCATCAAACAATCAAAAT
Found at i:15828690 original size:48 final size:48
Alignment explanation
Indices: 15828626--15829093 Score: 374
Period size: 48 Copynumber: 9.8 Consensus size: 48
15828616 TGATATGTGT
15828626 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
* * * * * ** * *
15828674 GCCAGTGTAAGGCCATGTTTGGAACATGGCATCATCAATGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
* * ** * ** * * *
15828722 GCTAGTGTAAGACCATGTATGGGACATAACAT-TGGTATAGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA-ATATGAGA
* *
15828770 GCTAGTGTAAGACCATGT-TCGGGACATGGCATC-GACCACGATATGAGA
1 GCCAGTGTAAGACCATGTCT-GGGACATGGCATCAG-CCACAATATGAGA
* * * * *
15828818 GCCAGTGTAAGACCATATTTGGAACATGGCATC-GGCA-ATGTAATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA-AT-ATGAGA
* * * * ** * *
15828866 GCCATTATAAGACCATGTTTGGGACATGGCATCA-ACATTGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CAATATGAGA
* *
15828914 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCACAATATGAGA
* * ** * *
15828962 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
* * * * * *
15829010 GCTAGTGTAAGACCATGTCTGGGACATAGCATTAGCCTCAACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
* *
15829058 GCCAGTGTAAGACCATGTTTGGAACATGGCATCAGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
15829094 AATTCACCCT
Statistics
Matches: 327, Mismatches: 80, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
47 6 0.02
48 315 0.96
49 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
Found at i:15828797 original size:96 final size:96
Alignment explanation
Indices: 15828629--15829096 Score: 444
Period size: 96 Copynumber: 4.9 Consensus size: 96
15828619 TATGTGTGCC
* * * * *
15828629 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA-ATATGAGAGCCAGTGTAAGGCCATGTT
1 AGTGTAAGACCATGTCTGGGACATAGCAT-TGGCATAGATATGAGAGCCAGTGTAAGACCATGTT
* *
15828693 TGGAACATGGCATCATCAATGAGACGAGAGCT
65 TGGGACATGGCATCAGCAATGAGACGAGAGCT
* * * * * * *
15828725 AGTGTAAGACCATGTATGGGACATAACATTGGTATAGATATGTGCGCTAGTGTAAGACCATGTTC
1 AGTGTAAGACCATGTCTGGGACATAGCATTGGCATAGATATGAGAGCCAGTGTAAGACCATGTTT
* * * * *
15828790 GGGACATGGCATC-GACCACGATATGAGAGCC
66 GGGACATGGCATCAG-CAATGAGACGAGAGCT
* * * * * * *
15828821 AGTGTAAGACCATATTTGGAACATGGCATCGGCA-ATG-TAATGAGAGCCATTATAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATAGCATTGGCATA-GAT-ATGAGAGCCAGTGTAAGACCATGT
* * * * * *
15828884 TTGGGACATGGCATCAACATTGATATGTGCGCT
64 TTGGGACATGGCATCAGCAATGAGACGAGAGCT
* * * * * *
15828917 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACA-TTATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATAGCATTG-GCATAGATATGAGAGCCAGTGTAAGACCATGTT
*
15828981 TGGGACATGGCATCGGCAATGAGACGAGAGCT
65 TGGGACATGGCATCAGCAATGAGACGAGAGCT
* * * *
15829013 AGTGTAAGACCATGTCTGGGACATAGCATTAGCCTCA-ACATGTGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATAGCATTGGCAT-AGATATGAGAGCCAGTGTAAGACCATGTT
*
15829077 TGGAACATGGCATCAGCAAT
65 TGGGACATGGCATCAGCAAT
15829097 TCACCCTCTT
Statistics
Matches: 298, Mismatches: 65, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
95 6 0.02
96 288 0.97
97 3 0.01
98 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATAGCATTGGCATAGATATGAGAGCCAGTGTAAGACCATGTTT
GGGACATGGCATCAGCAATGAGACGAGAGCT
Found at i:15828877 original size:144 final size:143
Alignment explanation
Indices: 15828617--15829090 Score: 614
Period size: 144 Copynumber: 3.3 Consensus size: 143
15828607 ACATTTGAGT
*
15828617 GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCACAATATGAGAGCCAGTG
1 GATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCAC-ATATGAGAGCCAGTG
* **
15828681 TAAGGCCATGTTTGGAACATGGCATCATCAATGAGACGAGAGCTAGTGTAAGACCATGTATGGGA
64 TAAGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGAGCTAGTGTAAGACCATGTATGGGA
* * *
15828746 CATAACATTGGTATA
129 CATAGCATTAGCATA
*
15828761 GATATGTGCGCTAGTGTAAGACCATGT-TCGGGACATGGCATCGACCACGATATGAGAGCCAGTG
1 GATATGTGCGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGACCAC-ATATGAGAGCCAGTG
* * * * * *
15828825 TAAGACCATATTTGGAACATGGCATCGGCAATGTA-ATGAGAGCCATTATAAGACCATGTTTGGG
64 TAAGACCATGTTTGGAACATGGCATCGGCAATG-AGACGAGAGCTAGTGTAAGACCATGTATGGG
* * * *
15828889 ACATGGCATCAACATT
128 ACATAGCATTAGCATA
*
15828905 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTGT
1 GATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACA-TATGAGAGCCAGTGT
* * *
15828970 AAGACCATGTCTGGGACATGGCATCGGCAATGAGACGAGAGCTAGTGTAAGACCATGTCTGGGAC
65 AAGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGAGCTAGTGTAAGACCATGTATGGGAC
*
15829035 ATAGCATTAGCCTCA
130 ATAGCATTAGCAT-A
* * * *
15829050 -ACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 GATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATC
15829091 AGCAATTCAC
Statistics
Matches: 286, Mismatches: 37, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
143 3 0.01
144 280 0.98
145 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (143 bp):
GATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATATGAGAGCCAGTGTA
AGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGAGCTAGTGTAAGACCATGTATGGGACA
TAGCATTAGCATA
Found at i:15832002 original size:40 final size:40
Alignment explanation
Indices: 15831878--15832042 Score: 183
Period size: 40 Copynumber: 4.1 Consensus size: 40
15831868 CGGAATTTAA
** *
15831878 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
15831918 CCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
15831958 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
15831998 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
15832038 CCGGA
1 CCGGA
15832043 CATCATTCAA
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
39 4 0.04
40 90 0.86
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:15840270 original size:14 final size:14
Alignment explanation
Indices: 15840251--15840280 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15840241 ACCCCTTCAT
*
15840251 TCCCTCATTCATCA
1 TCCCTCATCCATCA
15840265 TCCCTCATCCATCA
1 TCCCTCATCCATCA
15840279 TC
1 TC
15840281 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:15843759 original size:20 final size:21
Alignment explanation
Indices: 15843721--15843760 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15843711 TAGTTTTTTA
15843721 TGTTATAATTGTTGCAAATTG
1 TGTTATAATTGTTGCAAATTG
15843742 TGTT-TAATT-TTGCTAAATT
1 TGTTATAATTGTTGC-AAATT
15843761 CTATTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.53
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAATTG
Found at i:15846437 original size:15 final size:14
Alignment explanation
Indices: 15846419--15846445 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15846409 AATTTTTTGA
15846419 AAAAAATTGAAAAG
1 AAAAAATTGAAAAG
15846433 AAAAAATTGAAAA
1 AAAAAATTGAAAA
15846446 ATAGAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (14 bp):
AAAAAATTGAAAAG
Found at i:15846453 original size:32 final size:32
Alignment explanation
Indices: 15846418--15846479 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
15846408 TAATTTTTTG
15846418 AAAAAAATTGA-AAAGAAAAAATTGAAAAATAGA
1 AAAAAAATT-ACAAA-AAAAAATTGAAAAATAGA
*
15846451 AAAAAAATTACACAAAAAAATTGAAAAAT
1 AAAAAAATTACAAAAAAAAATTGAAAAAT
15846480 GACTTTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (32 bp):
AAAAAAATTACAAAAAAAAATTGAAAAATAGA
Found at i:15848153 original size:24 final size:24
Alignment explanation
Indices: 15848150--15848195 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
15848140 TATTTGTGAG
15848150 ACTTTTATTTTATTTTTATTATGA
1 ACTTTTATTTTATTTTTATTATGA
15848174 ACTTTTATTTTATTTTTATTAT
1 ACTTTTATTTTATTTTTATTAT
15848196 TTTGATCGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (24 bp):
ACTTTTATTTTATTTTTATTATGA
Found at i:15848164 original size:29 final size:27
Alignment explanation
Indices: 15848128--15848197 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 27
15848118 TCGGTTCTAC
*
15848128 TTTTATTTATTTTATTTGTGAGACTTTTA
1 TTTTATTT-TTTTATTTATGA-ACTTTTA
15848157 TTTTA--TTTTTA-TTATGAACTTTTA
1 TTTTATTTTTTTATTTATGAACTTTTA
15848181 TTTTATTTTTATTATTT
1 TTTTATTTTT-TTATTT
15848198 TGATCGTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
24 12 0.33
25 5 0.14
26 8 0.22
27 4 0.11
28 2 0.06
29 5 0.14
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.70
Consensus pattern (27 bp):
TTTTATTTTTTTATTTATGAACTTTTA
Found at i:15849475 original size:61 final size:61
Alignment explanation
Indices: 15849373--15849487 Score: 185
Period size: 61 Copynumber: 1.9 Consensus size: 61
15849363 ATAGTGGTGG
* *
15849373 AAGCAAGCTTATGGTAATAGCATTTATCGTTCGACTGTTGAGTGCCTAATATTTGATTTTC
1 AAGCAAGCTTATGGTAATAGCATTTATCGTTCAACTATTGAGTGCCTAATATTTGATTTTC
* * *
15849434 AAGCAAGCTTCTGGTAATGGCATTTCTCGTTCAACTATTGAGTGCCTAATATTT
1 AAGCAAGCTTATGGTAATAGCATTTATCGTTCAACTATTGAGTGCCTAATATTT
15849488 TAACCTTAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (61 bp):
AAGCAAGCTTATGGTAATAGCATTTATCGTTCAACTATTGAGTGCCTAATATTTGATTTTC
Found at i:15851321 original size:14 final size:14
Alignment explanation
Indices: 15851299--15851336 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
15851289 TTTAACTTAT
15851299 TATAA-TAATTTTA
1 TATAATTAATTTTA
*
15851312 TATAATTAATTTTT
1 TATAATTAATTTTA
*
15851326 TAAAATTAATT
1 TATAATTAATT
15851337 GAATTAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATAATTAATTTTA
Found at i:15852195 original size:89 final size:90
Alignment explanation
Indices: 15852094--15852271 Score: 204
Period size: 89 Copynumber: 2.0 Consensus size: 90
15852084 AACATAACAG
* * *
15852094 AAAGGTATAAACTTAAACG-AAAGCGA-CCATTGTCTTCATCGAAACCC-AGAAGGAGATTGTTA
1 AAAGCTATAAACTTAAACGCAAA-C-ACCCATTGTCTTCATCGAAACCCGA-AAGGAGATCGATA
15852156 AA-CTCGAA-AAAAGCTTGAAAATGTGAC
63 AATCT-GAAGAAAAGCTTGAAAATGTGAC
* * * * * *
15852183 AAAGCTATAAACTTCAATGCAAACACCCATTGTCTTCATGGGAGCTCGAAAGGAGATCGATAAAT
1 AAAGCTATAAACTTAAACGCAAACACCCATTGTCTTCATCGAAACCCGAAAGGAGATCGATAAAT
15852248 CTGAAGAAAAGCTTGAAAATGTGA
66 CTGAAGAAAAGCTTGAAAATGTGA
15852272 TAGAAAGCTA
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
88 1 0.01
89 50 0.67
90 24 0.32
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.22
Consensus pattern (90 bp):
AAAGCTATAAACTTAAACGCAAACACCCATTGTCTTCATCGAAACCCGAAAGGAGATCGATAAAT
CTGAAGAAAAGCTTGAAAATGTGAC
Found at i:15863492 original size:37 final size:37
Alignment explanation
Indices: 15863442--15863516 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
15863432 AGTCGTTAGG
* **
15863442 ATTGAAATATTATGCCTCTTAGAAAAGTTAGGCGAAC
1 ATTGAAACATTATGCCTCCCAGAAAAGTTAGGCGAAC
*
15863479 ATTGAAACATTATGCCTCCCAGAAAAGTTAGGTGAAC
1 ATTGAAACATTATGCCTCCCAGAAAAGTTAGGCGAAC
15863516 A
1 A
15863517 ATGGAAATAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (37 bp):
ATTGAAACATTATGCCTCCCAGAAAAGTTAGGCGAAC
Found at i:15865092 original size:40 final size:40
Alignment explanation
Indices: 15864910--15865132 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
15864900 TCCTCGTTCA
* * * * *
15864910 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15864949 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15864989 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
15865029 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
15865069 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
15865109 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15865133 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15865141 original size:41 final size:41
Alignment explanation
Indices: 15865064--15865141 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15865054 TTAGTATCTC
* * *
15865064 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15865105 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15865142 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15872970 original size:40 final size:40
Alignment explanation
Indices: 15872786--15873010 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 40
15872776 GCTCCTCGTT
* * * * *
15872786 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
15872826 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
15872865 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
15872905 CTAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* ** * * * *
15872945 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
15872986 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
15873011 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.70
41 11 0.07
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:15873019 original size:41 final size:41
Alignment explanation
Indices: 15872942--15873019 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15872932 TTAGTATCTC
* * *
15872942 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15872983 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15873020 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15895198 original size:3 final size:3
Alignment explanation
Indices: 15895190--15895221 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15895180 TCCGGCTTCA
15895190 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
15895222 TTATTTGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:15896682 original size:374 final size:374
Alignment explanation
Indices: 15895728--15896852 Score: 2081
Period size: 374 Copynumber: 3.0 Consensus size: 374
15895718 CGACAGGCCG
* * * *
15895728 TGTAACTCTCTGAGACCATGCGGTTCAATCTGTACTTAAAAATTAAAAAACACACGGCCATGTGA
1 TGTAACTCTCTGAGATCATGTGGTTCAATCTGTACTTAAAAATTAAAAGACACACGGCCGTGTGA
*
15895793 GGAGACCGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATATGCCTTAAAATTCA
66 GGAGA-CGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATGTGCCTTAAAATTCA
15895858 AGTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAA
130 AGTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAA
* *
15895923 AACACACCTAAACAAGCCTAAATCATGTCAAAACAAATGCATCTCATTCAAATCTAAACACTAAA
195 AACACACCTAAACAGGCCTAAATCATGTCAAAACAAATACATCTCATTCAAATCTAAACACTAAA
*
15895988 CCAATGTATCCTCATTGGTACCAAAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTT
260 CCAATATATCCTCATTGGTACCAAAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTT
*
15896053 CAAACATTAAACATTCATCAATCTCCA-ACTAATTAGCCACTTCACCCAT
325 CAAACATTAAACATTCATCAATCTCCACACTAATTAGCCACTTCACCTAT
*
15896102 TGTAACTCTCTGAGATCATGTGGTTCAATTTGTACTTAAAAATTAAAAGACACACGGCCGTGTGA
1 TGTAACTCTCTGAGATCATGTGGTTCAATCTGTACTTAAAAATTAAAAGACACACGGCCGTGTGA
15896167 GGAGACGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATGTGCCTTAAAATTCAA
66 GGAGACGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATGTGCCTTAAAATTCAA
15896232 GTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAAA
131 GTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAAA
15896297 ACACACCTAAACAGGCCTAAATCATGTCAAAACAAATACATCTCATTCAAATCTAAACACTAAAC
196 ACACACCTAAACAGGCCTAAATCATGTCAAAACAAATACATCTCATTCAAATCTAAACACTAAAC
* *
15896362 CAATATATTCTCATTGGTACCATAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTTC
261 CAATATATCCTCATTGGTACCAAAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTTC
15896427 AAACATTAAACATTCATCAATCTCCACACTAATTAGCCACTTCACCTAT
326 AAACATTAAACATTCATCAATCTCCACACTAATTAGCCACTTCACCTAT
*
15896476 TGTAACTCTCTGAGATCATGTGGTTCAATCTGTACTTAAAAATTAAAAGACACACGGCCGTGTTA
1 TGTAACTCTCTGAGATCATGTGGTTCAATCTGTACTTAAAAATTAAAAGACACACGGCCGTGTGA
*
15896541 AGAGACGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATGTGCCTTAAAATTCAA
66 GGAGACGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATGTGCCTTAAAATTCAA
15896606 GTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAAA
131 GTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAAA
*
15896671 ACACACCTAAACAGGCCTCAATCATGTCAAAACAAATACATCTCATTCAAATCTAAACACTAAAC
196 ACACACCTAAACAGGCCTAAATCATGTCAAAACAAATACATCTCATTCAAATCTAAACACTAAAC
*
15896736 CAATATATCCTCATTGGTACCACAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTTC
261 CAATATATCCTCATTGGTACCAAAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTTC
*
15896801 AAACATTAAACATTCATCAATCTCTACACTAATTAGCCACTTCACCTAT
326 AAACATTAAACATTCATCAATCTCCACACTAATTAGCCACTTCACCTAT
15896850 TGT
1 TGT
15896853 TAATGAATCA
Statistics
Matches: 731, Mismatches: 19, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
373 275 0.38
374 456 0.62
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (374 bp):
TGTAACTCTCTGAGATCATGTGGTTCAATCTGTACTTAAAAATTAAAAGACACACGGCCGTGTGA
GGAGACGTGTGTGACACACGACCGTGTGACAGCCTGTATGTCCTAAAATGTGCCTTAAAATTCAA
GTTTACCAAATTGAACTTACTTGAGCCACAAGCATACCTTTTCACAACCATTTAAACTATTCAAA
ACACACCTAAACAGGCCTAAATCATGTCAAAACAAATACATCTCATTCAAATCTAAACACTAAAC
CAATATATCCTCATTGGTACCAAAATTCAAATACTAAAACATTTCAAACTCAATACCACAAGTTC
AAACATTAAACATTCATCAATCTCCACACTAATTAGCCACTTCACCTAT
Found at i:15897481 original size:40 final size:40
Alignment explanation
Indices: 15897387--15897588 Score: 271
Period size: 40 Copynumber: 5.0 Consensus size: 40
15897377 TCAAATACAT
*
15897387 CCTTTTCATTTGTTATCCTTTAT-GGATAACATCCTTTTTCAA
1 CCTTTTCATTTGATATCCTTT-TCGGAT-ACATCC-TTTTCAA
* * *
15897429 TCTTTTAATTTGATATCCTTTTCGGATAAATCCTTTTCAA
1 CCTTTTCATTTGATATCCTTTTCGGATACATCCTTTTCAA
* *
15897469 CCTTTTCGTTTGATATCCTTTTTGGATACATCCTTTTCAA
1 CCTTTTCATTTGATATCCTTTTCGGATACATCCTTTTCAA
* *
15897509 ACGTTTCATTTGATATCCTTTTCGGATACATCCTTTTCAA
1 CCTTTTCATTTGATATCCTTTTCGGATACATCCTTTTCAA
* **
15897549 CCTTTTCGTTTGATATCCTTTTTAGATACATCCTTTTCAA
1 CCTTTTCATTTGATATCCTTTTCGGATACATCCTTTTCAA
15897589 GTATATTACT
Statistics
Matches: 141, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 113 0.80
41 6 0.04
42 22 0.16
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.49
Consensus pattern (40 bp):
CCTTTTCATTTGATATCCTTTTCGGATACATCCTTTTCAA
Found at i:15897529 original size:80 final size:80
Alignment explanation
Indices: 15897387--15897588 Score: 314
Period size: 80 Copynumber: 2.5 Consensus size: 80
15897377 TCAAATACAT
* * * * *
15897387 CCTTTTCATTTGTTATCCTTTATGGATAACATCCTTTTTCAATCTTTTAATTTGATATCCTTTTC
1 CCTTTTCGTTTGATATCCTTTTTGGAT-ACATCC-TTTTCAAACGTTTAATTTGATATCCTTTTC
15897452 GGATAAATCCTTTTCAA
64 GGATAAATCCTTTTCAA
*
15897469 CCTTTTCGTTTGATATCCTTTTTGGATACATCCTTTTCAAACGTTTCATTTGATATCCTTTTCGG
1 CCTTTTCGTTTGATATCCTTTTTGGATACATCCTTTTCAAACGTTTAATTTGATATCCTTTTCGG
*
15897534 ATACATCCTTTTCAA
66 ATAAATCCTTTTCAA
*
15897549 CCTTTTCGTTTGATATCCTTTTTAGATACATCCTTTTCAA
1 CCTTTTCGTTTGATATCCTTTTTGGATACATCCTTTTCAA
15897589 GTATATTACT
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
80 82 0.73
81 6 0.05
82 24 0.21
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.49
Consensus pattern (80 bp):
CCTTTTCGTTTGATATCCTTTTTGGATACATCCTTTTCAAACGTTTAATTTGATATCCTTTTCGG
ATAAATCCTTTTCAA
Found at i:15900642 original size:18 final size:18
Alignment explanation
Indices: 15900619--15900661 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
15900609 CAAGGTCACG
*
15900619 ATCAATAGTGTCACTATC
1 ATCAATAGCGTCACTATC
*
15900637 ATCAATAGCGTCATTATC
1 ATCAATAGCGTCACTATC
*
15900655 ATTAATA
1 ATCAATA
15900662 TTGATATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (18 bp):
ATCAATAGCGTCACTATC
Found at i:15903044 original size:31 final size:30
Alignment explanation
Indices: 15903009--15903104 Score: 74
Period size: 31 Copynumber: 3.2 Consensus size: 30
15902999 TTGGTATCTG
15903009 AACTTGACATTTTTTCCTAATTTGATACCTA
1 AACTTGACATTTTTTCCTAATTTG-TACCTA
* * *
15903040 AACTT----TTTTTTGACCCAATTTCGTACATG
1 AACTTGACATTTTTT--CCTAATTT-GTACCTA
* *
15903069 AACTTGACACTTTCTCCTAATTTGGTACCTA
1 AACTTGACATTTTTTCCTAATTT-GTACCTA
15903100 AACTT
1 AACTT
15903105 TTTTTGGGCC
Statistics
Matches: 49, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
27 6 0.12
29 16 0.33
30 1 0.02
31 22 0.45
33 4 0.08
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.43
Consensus pattern (30 bp):
AACTTGACATTTTTTCCTAATTTGTACCTA
Found at i:15903100 original size:60 final size:60
Alignment explanation
Indices: 15903007--15903175 Score: 203
Period size: 60 Copynumber: 2.8 Consensus size: 60
15902997 ATTTGGTATC
* *
15903007 TGAACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTTTGACCCAATTTCGTACA
1 TGAACTTGACATTTTCTCCTAATTTGGTACCTAAACTTTTTTTTGACCCAATTTCGTACA
* * * * *
15903067 TGAACTTGACACTTTCTCCTAATTTGGTACCTAAACTTTTTTTGGGCCCAATTTGGTACT
1 TGAACTTGACATTTTCTCCTAATTTGGTACCTAAACTTTTTTTTGACCCAATTTCGTACA
* * * *
15903127 TGAACTTGGCATTTTTTCCCCCTATTTTGGTACCTAAGCTTTTTCTTTG
1 TGAACTTGACA--TTTT-CTCCTAATTTGGTACCTAAACTTTTT-TTTG
15903176 GTTCAATTTG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
60 63 0.68
62 3 0.03
63 23 0.25
64 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (60 bp):
TGAACTTGACATTTTCTCCTAATTTGGTACCTAAACTTTTTTTTGACCCAATTTCGTACA
Found at i:15903697 original size:31 final size:32
Alignment explanation
Indices: 15903652--15903719 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
15903642 AAGATTAAGA
*
15903652 ACCAACTTAAG-AAAAAGTGTCAAGTTTAGGT
1 ACCAACTTAAGAAAAAAGTATCAAGTTTAGGT
* * *
15903683 ACCAAGTTAGGAAAAAAGTATCAAGTTTGGGT
1 ACCAACTTAAGAAAAAAGTATCAAGTTTAGGT
15903715 ACCAA
1 ACCAA
15903720 ATTGGACAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.24
Consensus pattern (32 bp):
ACCAACTTAAGAAAAAAGTATCAAGTTTAGGT
Found at i:15903731 original size:32 final size:32
Alignment explanation
Indices: 15903663--15903767 Score: 98
Period size: 32 Copynumber: 3.5 Consensus size: 32
15903653 CCAACTTAAG
* *
15903663 AAAAAGTGTCAAGTTTAGGTACCAAGTTAGGA
1 AAAAAGTATCAAGTTTAGGTACCAAATTAGGA
*
15903695 AAAAAGTATCAAGTTTGGGTACCAAATT-GGA
1 AAAAAGTATCAAGTTTAGGTACCAAATTAGGA
*
15903726 CAAAAA--A--AAGTTTAAGTACCAAATTA--A
1 -AAAAAGTATCAAGTTTAGGTACCAAATTAGGA
* *
15903753 AAAAAATGTCAAGTT
1 AAAAAGTATCAAGTT
15903768 CAAATACTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
26 5 0.08
27 1 0.02
28 16 0.26
30 6 0.10
31 3 0.05
32 30 0.49
ACGTcount: A:0.48, C:0.10, G:0.18, T:0.25
Consensus pattern (32 bp):
AAAAAGTATCAAGTTTAGGTACCAAATTAGGA
Found at i:15903747 original size:91 final size:89
Alignment explanation
Indices: 15903588--15903767 Score: 227
Period size: 91 Copynumber: 2.0 Consensus size: 89
15903578 AAAAAAAGAG
* ***
15903588 TAGGTACCAAATTAGGAAAACGAGTCAAGTTCAGGTACCAAATTGGACTCCAAAAAGATTAAGAA
1 TAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTGGACAAAAAAAAGATTAAGAA
* *
15903653 CCAACTTAAGAAAAAGTGTCAAGTT
66 CCAAATTAA-AAAAAATGTCAAGTT
* ** *
15903678 TAGGTACCAAGTTAGGAAAAA-AGTATCAAGTTTGGGTACCAAATTGGACAAAAAAAAGTTTAAG
1 TAGGTACCAAATTAGGAAAAAGAG--TCAAGTTCAGGTACCAAATTGGACAAAAAAAAGATTAAG
*
15903742 TACCAAATTAAAAAAAATGTCAAGTT
64 AACCAAATTAAAAAAAATGTCAAGTT
15903768 CAAATACTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
89 2 0.03
90 33 0.43
91 42 0.55
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (89 bp):
TAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTGGACAAAAAAAAGATTAAGAA
CCAAATTAAAAAAAATGTCAAGTT
Found at i:15922401 original size:40 final size:41
Alignment explanation
Indices: 15922357--15922472 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 41
15922347 TTAAGTTACC
* ** *
15922357 ATAGTGAATAAGGAACAAATATTATCCACTTTAAATAT-TT
1 ATAGTGAATCAGGAACAAATCCTATTCACTTTAAATATCTT
*
15922397 ATAGTGAATCAGGAACAAATCCTATTCACTTT-AATTTCTT
1 ATAGTGAATCAGGAACAAATCCTATTCACTTTAAATATCTT
* *
15922437 TTAGTGAATCAGGAATAAATCCTATTCACTTTAAAT
1 ATAGTGAATCAGGAACAAATCCTATTCACTTTAAAT
15922473 TCTCAAGAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.06
40 60 0.90
41 3 0.04
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (41 bp):
ATAGTGAATCAGGAACAAATCCTATTCACTTTAAATATCTT
Found at i:15924294 original size:21 final size:21
Alignment explanation
Indices: 15924270--15924313 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
15924260 TTAAATCATA
15924270 TAGAATGGTAAACTAGAATTT
1 TAGAATGGTAAACTAGAATTT
15924291 TAGAATGGTAAACTAGAATTT
1 TAGAATGGTAAACTAGAATTT
15924312 TA
1 TA
15924314 CTTTAGTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.34
Consensus pattern (21 bp):
TAGAATGGTAAACTAGAATTT
Found at i:15935265 original size:17 final size:17
Alignment explanation
Indices: 15935245--15935278 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15935235 TTTTTAAAAA
15935245 CATCAAACGATTTTTCC
1 CATCAAACGATTTTTCC
*
15935262 CATCAAACGGTTTTTCC
1 CATCAAACGATTTTTCC
15935279 TATACTTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.35
Consensus pattern (17 bp):
CATCAAACGATTTTTCC
Found at i:15936655 original size:18 final size:17
Alignment explanation
Indices: 15936622--15936660 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
15936612 TTGTATAAAT
15936622 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
15936640 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
15936657 TGTG
1 TGTG
15936661 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:15936755 original size:75 final size:75
Alignment explanation
Indices: 15936665--15936812 Score: 296
Period size: 75 Copynumber: 2.0 Consensus size: 75
15936655 AATGTGGAAG
15936665 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
15936730 GGTTGAACAT
66 GGTTGAACAT
15936740 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
15936805 GGTTGAAC
66 GGTTGAAC
15936813 TTAGGAATAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:15936988 original size:23 final size:23
Alignment explanation
Indices: 15936961--15937058 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
15936951 AGTGTTATTG
15936961 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
15936984 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
15937007 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
15937029 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
15937052 ATCAGTG
1 ATCAGTG
15937059 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:15937027 original size:45 final size:45
Alignment explanation
Indices: 15936963--15937051 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
15936953 TGTTATTGAT
* *
15936963 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
15937008 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
15937052 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:15942189 original size:18 final size:17
Alignment explanation
Indices: 15942156--15942194 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
15942146 TTGTATAAAT
15942156 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
15942174 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
15942191 TGTG
1 TGTG
15942195 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:15942289 original size:75 final size:75
Alignment explanation
Indices: 15942199--15942346 Score: 296
Period size: 75 Copynumber: 2.0 Consensus size: 75
15942189 AATGTGGAAG
15942199 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
15942264 GGTTGAACAT
66 GGTTGAACAT
15942274 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
15942339 GGTTGAAC
66 GGTTGAAC
15942347 TTAGGAATAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:15942522 original size:23 final size:23
Alignment explanation
Indices: 15942495--15942592 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
15942485 AGTGTTATTG
15942495 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
15942518 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
15942541 -GCAGTGGTAGCTTCGGGTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
15942563 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
15942586 ATCAGTG
1 ATCAGTG
15942593 TGGCACTTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 19 0.28
23 48 0.72
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:15942562 original size:45 final size:45
Alignment explanation
Indices: 15942497--15942585 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
15942487 TGTTATTGAT
* *
15942497 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATG
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATG
*
15942542 CAGTGGTAGCTTCGGGTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
15942586 ATCAGTGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATG
Found at i:15945477 original size:43 final size:43
Alignment explanation
Indices: 15945429--15945589 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 43
15945419 CGAGATGTCA
*
15945429 TGTAAGACCATGTATGGGACATTGGCATTGTATTGTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACG
* * * **
15945472 TGTAAGACCATGTCTGAGCCATTGGCATTGTTATT-CGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGATTACG
* * * * *
15945515 TGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGTGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGTGATTACG
* * *
15945558 TGTAAGACCATATCTAGGATA-TGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT
15945590 GAGTTTTATG
Statistics
Matches: 93, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
41 2 0.02
42 8 0.09
43 79 0.85
44 4 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACG
Found at i:15965635 original size:59 final size:59
Alignment explanation
Indices: 15965572--15965692 Score: 224
Period size: 59 Copynumber: 2.1 Consensus size: 59
15965562 CTATCACGAA
*
15965572 ATAACGCGATCAGTCGGTAAGGGCTAATTAAACCCTAAATTGTATGAACTATCTATTTT
1 ATAACGCGATCAGTCGATAAGGGCTAATTAAACCCTAAATTGTATGAACTATCTATTTT
*
15965631 ATAACGCGATCAGTCGATAAGGGCTAATTAAACCCTAAATTGTATGAACTGTCTATTTT
1 ATAACGCGATCAGTCGATAAGGGCTAATTAAACCCTAAATTGTATGAACTATCTATTTT
15965690 ATA
1 ATA
15965693 TTCTGATCTG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (59 bp):
ATAACGCGATCAGTCGATAAGGGCTAATTAAACCCTAAATTGTATGAACTATCTATTTT
Found at i:15967304 original size:22 final size:22
Alignment explanation
Indices: 15967278--15967332 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
15967268 TTTCTAAAAT
15967278 TATGTTATATGATAAGCTCCGA
1 TATGTTATATGATAAGCTCCGA
* * *
15967300 TATGTTACATGATATGCTCTGA
1 TATGTTATATGATAAGCTCCGA
*
15967322 TATGTAATATG
1 TATGTTATATG
15967333 GTAGGAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (22 bp):
TATGTTATATGATAAGCTCCGA
Found at i:15969321 original size:3 final size:3
Alignment explanation
Indices: 15969313--15969347 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15969303 CTTTTGTTCT
15969313 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
15969348 TTGTCGTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15973165 original size:13 final size:12
Alignment explanation
Indices: 15973147--15973189 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
15973137 TTTTTTAATG
15973147 TTTATAGTAATAT
1 TTTATAGTAA-AT
15973160 TTTATAGTAAAT
1 TTTATAGTAAAT
*
15973172 TTTAGTAATAAAAT
1 TTTA-TAGT-AAAT
15973186 TTTA
1 TTTA
15973190 GATAGTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 6 0.22
13 13 0.48
14 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (12 bp):
TTTATAGTAAAT
Found at i:15974372 original size:15 final size:15
Alignment explanation
Indices: 15974348--15974396 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
15974338 CTTGTACGAC
*
15974348 CCCTAGGTGTGTGAA
1 CCCTAGGTGTGCGAA
* *
15974363 CCCTAAGTGTGCAAA
1 CCCTAGGTGTGCGAA
*
15974378 CCCTAGGTATGCGAA
1 CCCTAGGTGTGCGAA
15974393 CCCT
1 CCCT
15974397 TGTACAAACT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (15 bp):
CCCTAGGTGTGCGAA
Found at i:15974380 original size:57 final size:56
Alignment explanation
Indices: 15974313--15974436 Score: 149
Period size: 57 Copynumber: 2.2 Consensus size: 56
15974303 CAAACCCATC
* * * * * *
15974313 TGTGCGAACCCTAGGTATACGAAAGCTTGTACGACCCCTAGGTGTGTGAACCCTAA
1 TGTGCAAACCCTAGGTATACGAAACCTTGTACAAACCCTAAGTGTGCGAACCCTAA
* * * *
15974369 GTGTGCAAACCCTAGGTATGCGAACCCTTGTACAAACTCTAAGTGTGCGAACCCTGA
1 -TGTGCAAACCCTAGGTATACGAAACCTTGTACAAACCCTAAGTGTGCGAACCCTAA
15974426 TGTGCAAACCC
1 TGTGCAAACCC
15974437 ATCTGTGTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
56 11 0.19
57 46 0.81
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (56 bp):
TGTGCAAACCCTAGGTATACGAAACCTTGTACAAACCCTAAGTGTGCGAACCCTAA
Found at i:15976573 original size:29 final size:29
Alignment explanation
Indices: 15976510--15976577 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
15976500 TAATCAACCG
15976510 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
15976539 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
15976568 CGCACACTTA
1 CGCACACTTA
15976578 CCTTTCCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:15976690 original size:174 final size:174
Alignment explanation
Indices: 15976399--15976726 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
15976389 AACTCAAGGT
* * * *
15976399 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
15976464 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
15976529 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
15976573 ACTTACCTTTCCCACTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTCCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
15976638 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
15976703 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
15976727 TGTACAATTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTCCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:15976718 original size:29 final size:30
Alignment explanation
Indices: 15976679--15976757 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
15976669 CTTAATAATC
15976679 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
15976709 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
15976738 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
15976758 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:15984801 original size:29 final size:29
Alignment explanation
Indices: 15984738--15984805 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
15984728 TAATCAACCG
15984738 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
15984767 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
15984796 CGCACACTTA
1 CGCACACTTA
15984806 CCTTTCCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:15984918 original size:174 final size:174
Alignment explanation
Indices: 15984627--15984954 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
15984617 AACTCAAGGT
* * *
15984627 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
15984692 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
15984757 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
15984801 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
15984866 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
15984931 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
15984955 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:15984946 original size:29 final size:30
Alignment explanation
Indices: 15984907--15984985 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
15984897 CTTAATAATC
15984907 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
15984937 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
15984966 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
15984986 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:15986804 original size:13 final size:14
Alignment explanation
Indices: 15986773--15986805 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15986763 ATTTTCTGCA
*
15986773 TAATTTTAATTATT
1 TAATGTTAATTATT
15986787 TAATGTTAATTA-T
1 TAATGTTAATTATT
15986800 TAATGT
1 TAATGT
15986806 GTTATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (14 bp):
TAATGTTAATTATT
Found at i:15991926 original size:25 final size:25
Alignment explanation
Indices: 15991896--15992084 Score: 157
Period size: 25 Copynumber: 7.6 Consensus size: 25
15991886 TTCTGATTAT
*
15991896 GGCTTTGTGCCGATATGCTATTGAA
1 GGCTTTGTGCCGATATGTTATTGAA
* *
15991921 GGCTTTGTGCCGATATGCTATTAAA
1 GGCTTTGTGCCGATATGTTATTGAA
** * *
15991946 GGCTTCATGCCGGTATGTTATTGAT
1 GGCTTTGTGCCGATATGTTATTGAA
* * *
15991971 GGCTTTGTGCTGATATGATATTGAT
1 GGCTTTGTGCCGATATGTTATTGAA
* * **
15991996 GGCTATGTGCCGATTTGTTATCCATA
1 GGCTTTGTGCCGATATGTTATTGA-A
* * *
15992022 -GCTTTGTGCCAATATGATATTGAT
1 GGCTTTGTGCCGATATGTTATTGAA
* * * *
15992046 GGCTATGTGCCAATCTGTTA-TCAA
1 GGCTTTGTGCCGATATGTTATTGAA
15992070 TGGCTTTGTGCCGAT
1 -GGCTTTGTGCCGAT
15992085 CGTATTATCG
Statistics
Matches: 128, Mismatches: 33, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
24 2 0.02
25 126 0.98
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (25 bp):
GGCTTTGTGCCGATATGTTATTGAA
Found at i:15992007 original size:50 final size:50
Alignment explanation
Indices: 15991894--15992084 Score: 204
Period size: 50 Copynumber: 3.8 Consensus size: 50
15991884 TATTCTGATT
* * * * * *
15991894 ATGGCTTTGTGCCGATATGCTATTGAAGGCTTTGTGCCGATATGCTATTA
1 ATGGCTATGTGCCGATATGTTATCGATGGCTTTGTGCCGATATGATATTG
* * * * *
15991944 AAGGCT-TCATGCCGGTATGTTATTGATGGCTTTGTGCTGATATGATATTG
1 ATGGCTAT-GTGCCGATATGTTATCGATGGCTTTGTGCCGATATGATATTG
* * * *
15991994 ATGGCTATGTGCCGATTTGTTATCCATAGCTTTGTGCCAATATGATATTG
1 ATGGCTATGTGCCGATATGTTATCGATGGCTTTGTGCCGATATGATATTG
* * *
15992044 ATGGCTATGTGCCAATCTGTTATCAATGGCTTTGTGCCGAT
1 ATGGCTATGTGCCGATATGTTATCGATGGCTTTGTGCCGAT
15992085 CGTATTATCG
Statistics
Matches: 117, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 1 0.01
50 115 0.98
51 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (50 bp):
ATGGCTATGTGCCGATATGTTATCGATGGCTTTGTGCCGATATGATATTG
Found at i:15992043 original size:75 final size:75
Alignment explanation
Indices: 15991894--15992056 Score: 184
Period size: 75 Copynumber: 2.2 Consensus size: 75
15991884 TATTCTGATT
* * * **
15991894 ATGGCTTTGTGCCGATATGCTATTGAAGGCTTTGTGCCGATATGCTATTAAAGGCTTCATGCCGG
1 ATGGCTTTGTGCCGATATGATATTGAAGGCTATGTGCCGATATGCTATCAAAGGCTTCATGCCAA
*
15991959 TATGTTATTG
66 TATGATATTG
* * * * * **
15991969 ATGGCTTTGTGCTGATATGATATTGATGGCTATGTGCCGATTTGTTATCCATA-GCTTTGTGCCA
1 ATGGCTTTGTGCCGATATGATATTGAAGGCTATGTGCCGATATGCTAT-CAAAGGCTTCATGCCA
15992033 ATATGATATTG
65 ATATGATATTG
*
15992044 ATGGCTATGTGCC
1 ATGGCTTTGTGCC
15992057 AATCTGTTAT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
75 70 0.97
76 2 0.03
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (75 bp):
ATGGCTTTGTGCCGATATGATATTGAAGGCTATGTGCCGATATGCTATCAAAGGCTTCATGCCAA
TATGATATTG
Found at i:16004887 original size:30 final size:30
Alignment explanation
Indices: 16004796--16004892 Score: 122
Period size: 30 Copynumber: 3.2 Consensus size: 30
16004786 TAAGGACACA
* * *
16004796 CCCGTGTAGTTAGGCTGTGAACTACACACG
1 CCCGTGTGGTTAGGCTGTGTACTACACATG
* * *
16004826 CCCGTATGGTCAGGCTGTGTACTACATATG
1 CCCGTGTGGTTAGGCTGTGTACTACACATG
*
16004856 CCCGTGTGGTTAGGCCGTGTACTACACATG
1 CCCGTGTGGTTAGGCTGTGTACTACACATG
*
16004886 CCTGTGT
1 CCCGTGT
16004893 AACTCTCTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.28
Consensus pattern (30 bp):
CCCGTGTGGTTAGGCTGTGTACTACACATG
Found at i:16011293 original size:17 final size:18
Alignment explanation
Indices: 16011263--16011301 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
16011253 ATGTTTGGTG
*
16011263 TATTACATAAAATTAA-A
1 TATTAAATAAAATTAATA
*
16011280 TATTAAATATAATTAATA
1 TATTAAATAAAATTAATA
16011298 TATT
1 TATT
16011302 TGGTAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TATTAAATAAAATTAATA
Found at i:16011897 original size:16 final size:17
Alignment explanation
Indices: 16011876--16011912 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
16011866 GTTAACAACC
*
16011876 TAATTTTCTATTTT-AT
1 TAATTTACTATTTTAAT
16011892 TAATTTACTATTTTAAT
1 TAATTTACTATTTTAAT
16011909 TAAT
1 TAAT
16011913 ATAGTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (17 bp):
TAATTTACTATTTTAAT
Found at i:16022747 original size:4 final size:4
Alignment explanation
Indices: 16022738--16022762 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
16022728 CACGTATATA
16022738 TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
16022763 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:16023751 original size:11 final size:11
Alignment explanation
Indices: 16023731--16023760 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16023721 TAGAATGATA
16023731 AAAATAAAAAT
1 AAAATAAAAAT
*
16023742 AAACTAAAAAT
1 AAAATAAAAAT
16023753 AAAATAAA
1 AAAATAAA
16023761 GGAGATGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:16023751 original size:17 final size:16
Alignment explanation
Indices: 16023729--16023760 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
16023719 AATAGAATGA
16023729 TAAAAATAAAAATAAAC
1 TAAAAAT-AAAATAAAC
16023746 TAAAAATAAAATAAA
1 TAAAAATAAAATAAA
16023761 GGAGATGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAAATAAAATAAAC
Found at i:16025461 original size:17 final size:17
Alignment explanation
Indices: 16025407--16025447 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
16025397 AAAAGAATTA
16025407 AAAATAAACTA-ATAAAAT
1 AAAATAAA-TAGAT-AAAT
16025425 AAAATAAATAGATAAAT
1 AAAATAAATAGATAAAT
16025442 AAAATA
1 AAAATA
16025448 GAAAGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
AAAATAAATAGATAAAT
Found at i:16026537 original size:6 final size:6
Alignment explanation
Indices: 16026490--16026522 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
16026480 ATTGATTCCA
*
16026490 TTTATT TTTATT TTTATT TTAATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
16026523 TTGGTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:16026546 original size:15 final size:14
Alignment explanation
Indices: 16026490--16026545 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 14
16026480 ATTGATTCCA
16026490 TTTA-TTTTT-ATT
1 TTTATTTTTTAATT
16026502 TTTA--TTTTAATT
1 TTTATTTTTTAATT
**
16026514 TTTATTTTTTTGGTT
1 TTTA-TTTTTTAATT
16026529 TTTATTTTTTAATT
1 TTTATTTTTTAATT
16026543 TTT
1 TTT
16026546 TTATTTGTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 4 0.11
12 11 0.31
14 11 0.31
15 10 0.28
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (14 bp):
TTTATTTTTTAATT
Found at i:16028439 original size:30 final size:30
Alignment explanation
Indices: 16028405--16028469 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
16028395 GCACATGCTT
*
16028405 GTGTGAGCCACACCGGCTGGCCACACGCCC
1 GTGTGAGCCACACAGGCTGGCCACACGCCC
* *
16028435 GTGTGAGCCACACAGGCTGGCCACATGCCT
1 GTGTGAGCCACACAGGCTGGCCACACGCCC
16028465 GTGTG
1 GTGTG
16028470 CTAGCTCGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.15
Consensus pattern (30 bp):
GTGTGAGCCACACAGGCTGGCCACACGCCC
Found at i:16034062 original size:21 final size:21
Alignment explanation
Indices: 16034036--16034076 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16034026 AGACGAGCAA
* *
16034036 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
16034057 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
16034077 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:16036853 original size:26 final size:27
Alignment explanation
Indices: 16036824--16036876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
16036814 AATCTGGTAC
16036824 TTAAAAATCAGAATTCGAGTAG-ATTT
1 TTAAAAATCAGAATTCGAGTAGCATTT
* *
16036850 TTAAAAATTAGAATTTGAGTAGCATTT
1 TTAAAAATCAGAATTCGAGTAGCATTT
16036877 AGCTTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.38
Consensus pattern (27 bp):
TTAAAAATCAGAATTCGAGTAGCATTT
Found at i:16040575 original size:37 final size:37
Alignment explanation
Indices: 16040534--16040604 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
16040524 TATACACCGC
*
16040534 TTTTTAAGACTCAGATTCATTAGGCAACAACAAATTT
1 TTTTTAAAACTCAGATTCATTAGGCAACAACAAATTT
16040571 TTTTTAAAACTCAGATTCATTAGGCAACAACAAA
1 TTTTTAAAACTCAGATTCATTAGGCAACAACAAA
16040605 ATCTCCTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (37 bp):
TTTTTAAAACTCAGATTCATTAGGCAACAACAAATTT
Found at i:16040788 original size:22 final size:23
Alignment explanation
Indices: 16040763--16040807 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
16040753 AGCCAAAAAT
*
16040763 ATGCTAGAA-AAGCATA-CTTGAG
1 ATGCTA-AAGAAGCAGACCTTGAG
16040785 ATGCTAAAGAAGCAGACCTTGAG
1 ATGCTAAAGAAGCAGACCTTGAG
16040808 CTTATCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 12 0.60
23 6 0.30
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (23 bp):
ATGCTAAAGAAGCAGACCTTGAG
Found at i:16041048 original size:42 final size:42
Alignment explanation
Indices: 16040989--16041074 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
16040979 ACTATATTAG
*
16040989 ACATTTCGAATAATTTACTAAAAAGGAATTAACCTCCTTAAA
1 ACATTTCGAATAATTTACTAAAAAAGAATTAACCTCCTTAAA
16041031 ACATTTCGAATAATTTACTAAAAAAGAATTAACCTCCTTAAA
1 ACATTTCGAATAATTTACTAAAAAAGAATTAACCTCCTTAAA
16041073 AC
1 AC
16041075 TATCTTTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (42 bp):
ACATTTCGAATAATTTACTAAAAAAGAATTAACCTCCTTAAA
Found at i:16048904 original size:6 final size:6
Alignment explanation
Indices: 16048893--16048918 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
16048883 TTATTCAGCA
16048893 GATGCT GATGCT GATGCT GATGCT GA
1 GATGCT GATGCT GATGCT GATGCT GA
16048919 ACTGCGGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.15, G:0.35, T:0.31
Consensus pattern (6 bp):
GATGCT
Found at i:16068987 original size:29 final size:29
Alignment explanation
Indices: 16068948--16069026 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
16068938 CTTAATAATC
*
16068948 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
16068978 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
16069007 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
16069027 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:16075013 original size:13 final size:13
Alignment explanation
Indices: 16074995--16075024 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16074985 GGTATATGAG
*
16074995 ATGGTTATTTGAA
1 ATGGTTACTTGAA
16075008 ATGGTTACTTGAA
1 ATGGTTACTTGAA
16075021 ATGG
1 ATGG
16075025 AAATGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.27, T:0.40
Consensus pattern (13 bp):
ATGGTTACTTGAA
Found at i:16078439 original size:19 final size:19
Alignment explanation
Indices: 16078415--16078477 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
16078405 AATAAAAATA
16078415 AAAATAATTTTAAAATTTT
1 AAAATAATTTTAAAATTTT
*
16078434 AAAATAAATTTTTAAA-TTT
1 AAAAT-AATTTTAAAATTTT
*
16078453 AAAAT-ATTTATAAAAATTCT
1 AAAATAATTT-T-AAAATTTT
16078473 AAAAT
1 AAAAT
16078478 TTATCTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.11
18 1 0.03
19 16 0.43
20 16 0.43
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATAATTTTAAAATTTT
Found at i:16078457 original size:27 final size:27
Alignment explanation
Indices: 16078423--16078480 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
16078413 TAAAAATAAT
* *
16078423 TTTAAAAT-TTTAAAATAAATTTTTAAA
1 TTTAAAATATTTAAAA-AAATTCTAAAA
*
16078450 TTTAAAATATTTATAAAAATTCTAAAA
1 TTTAAAATATTTAAAAAAATTCTAAAA
16078477 TTTA
1 TTTA
16078481 TCTTTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (27 bp):
TTTAAAATATTTAAAAAAATTCTAAAA
Found at i:16079041 original size:13 final size:13
Alignment explanation
Indices: 16079023--16079049 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16079013 CCATCGTCAG
16079023 TTTTTTTTTTGTT
1 TTTTTTTTTTGTT
16079036 TTTTTTTTTTGTT
1 TTTTTTTTTTGTT
16079049 T
1 T
16079050 CCCTCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (13 bp):
TTTTTTTTTTGTT
Found at i:16080418 original size:24 final size:24
Alignment explanation
Indices: 16080381--16080437 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
16080371 TTATTCATAC
16080381 ATTATAT-TATATGCATGAA-TCTT
1 ATTATATATATATGCAT-AAGTCTT
*
16080404 ATTATATATATATGCATAAGTTTT
1 ATTATATATATATGCATAAGTCTT
16080428 ATTATATATA
1 ATTATATATA
16080438 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 9 0.29
24 22 0.71
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (24 bp):
ATTATATATATATGCATAAGTCTT
Found at i:16081184 original size:18 final size:18
Alignment explanation
Indices: 16081155--16081198 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
16081145 AACAACGCCA
16081155 TGTTAT-TTTGTGTACTG
1 TGTTATATTTGTGTACTG
*
16081172 TGTTATATTTGTGTATTG
1 TGTTATATTTGTGTACTG
16081190 TGTTATATT
1 TGTTATATT
16081199 GTGAACCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.16, C:0.02, G:0.20, T:0.61
Consensus pattern (18 bp):
TGTTATATTTGTGTACTG
Found at i:16082034 original size:17 final size:17
Alignment explanation
Indices: 16082012--16082082 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
16082002 TGAACGAATT
16082012 TTATATTGAATGAACTG
1 TTATATTGAATGAACTG
* * *
16082029 TTATATTGTACGAACTA
1 TTATATTGAATGAACTG
*
16082046 TTATATTAAATGAA-TG
1 TTATATTGAATGAACTG
*
16082062 TTAT-TATGCATGAACTG
1 TTATAT-TGAATGAACTG
16082079 TTAT
1 TTAT
16082083 TTCATATGAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
15 1 0.02
16 11 0.26
17 31 0.72
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (17 bp):
TTATATTGAATGAACTG
Found at i:16082077 original size:33 final size:34
Alignment explanation
Indices: 16082012--16082099 Score: 83
Period size: 33 Copynumber: 2.6 Consensus size: 34
16082002 TGAACGAATT
* *
16082012 TTATATTGAATGAACTGTTATATTGTACGAACTA
1 TTATATTAAATGAACTGTTATATTGCACGAACTA
* *
16082046 TTATATTAAATGAA-TGTTAT-TATGCATGAACTG
1 TTATATTAAATGAACTGTTATAT-TGCACGAACTA
* *
16082079 TTAT-TTCATATGAACTATTAT
1 TTATATT-AAATGAACTGTTAT
16082100 TTTATGTGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
32 3 0.07
33 24 0.53
34 18 0.40
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.44
Consensus pattern (34 bp):
TTATATTAAATGAACTGTTATATTGCACGAACTA
Found at i:16097554 original size:39 final size:39
Alignment explanation
Indices: 16097500--16097713 Score: 313
Period size: 39 Copynumber: 5.5 Consensus size: 39
16097490 ATTTGAAAAT
16097500 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
16097539 TATATCCGGACTTAAAGTCCGCAGGCAATATGC-GGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * * *
16097577 TATATCTGGACTTCAGGTTCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
16097616 TATATCCAGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* ** *
16097655 TATATCCGGACTTCAAGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* *
16097694 TATATCTGGGCTTAAAGTCC
1 TATATCCGGACTTAAAGTCC
16097714 CGAAGGCTTA
Statistics
Matches: 155, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 33 0.21
39 122 0.79
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
Found at i:16097628 original size:77 final size:78
Alignment explanation
Indices: 16097500--16097713 Score: 322
Period size: 77 Copynumber: 2.8 Consensus size: 78
16097490 ATTTGAAAAT
*
16097500 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
1 TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
16097565 AATATGC-GGAAA
66 AATATGCGGGAAA
* * * *
16097577 TATATCTGGACTTCAGGTTCGCAGGCTATATGCGGGAAATATATCCAGACTTAAAGTCCGCAGGC
1 TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
16097642 TATATGCGGGAAA
66 AATATGCGGGAAA
** * * *
16097655 TATATCCGGACTTCAAGTCCGCAGGCTACGTGCTGGAAATATATCTGGGCTTAAAGTCC
1 TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCC
16097714 CGAAGGCTTA
Statistics
Matches: 121, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 66 0.55
78 55 0.45
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (78 bp):
TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
AATATGCGGGAAA
Found at i:16103104 original size:60 final size:59
Alignment explanation
Indices: 16102992--16103104 Score: 145
Period size: 60 Copynumber: 1.9 Consensus size: 59
16102982 TAGACATTCG
* * *
16102992 CAAACTATAATCCTCATTTTAAATTTATCCCTAAACTTCAAAACGTTTTAATTACATCC
1 CAAACTATAATCCTCATTTTAAATTTATCCCTAAACTTAAAAACATTCTAATTACATCC
** * * *
16103051 CAAACTATGGTCCTCATTTTTAGATTTATCCTTAAACTTAAAAATATTCTAATT
1 CAAACTATAATCCTCA-TTTTAAATTTATCCCTAAACTTAAAAACATTCTAATT
16103105 GCATTCCTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
59 14 0.31
60 31 0.69
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (59 bp):
CAAACTATAATCCTCATTTTAAATTTATCCCTAAACTTAAAAACATTCTAATTACATCC
Found at i:16103595 original size:7 final size:7
Alignment explanation
Indices: 16103579--16103620 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
16103569 TTTTAACACG
*
16103579 CTTACAC
1 CTTACGC
16103586 CTTACGC
1 CTTACGC
16103593 CTTACGC
1 CTTACGC
16103600 CTTACGC
1 CTTACGC
16103607 CTTACGC
1 CTTACGC
16103614 CTTACGC
1 CTTACGC
16103621 ATTTGCCCGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.17, C:0.43, G:0.12, T:0.29
Consensus pattern (7 bp):
CTTACGC
Found at i:16107990 original size:43 final size:43
Alignment explanation
Indices: 16107930--16108111 Score: 274
Period size: 43 Copynumber: 4.2 Consensus size: 43
16107920 TAAAAAACAA
* *
16107930 CGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCATAAACGC
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
*
16107973 CGCTAAAGGTCAAGACCTTTAGCGGCGTTTTTCCCACAAACGC
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
* * *
16108016 CGCTAGAGGTCAAGACCTTTAGCGGCGCTTTCCCCAAAAACGC
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
* ** *
16108059 CGCTAGAGGTCTTGACCTTTAGCGGCGCTTTTCCCACAAACGT
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
16108102 CGCTAAAGGT
1 CGCTAAAGGT
16108112 AATGAAATTT
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 126 1.00
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (43 bp):
CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
Found at i:16109320 original size:138 final size:138
Alignment explanation
Indices: 16109151--16109402 Score: 441
Period size: 138 Copynumber: 1.8 Consensus size: 138
16109141 TTTTAAAATT
*
16109151 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAATAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* *
16109216 TTAATACCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
66 TTAATACCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
16109281 TCCAGACG
131 TCCAGACG
* *
16109289 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTATTATAAAACCTAAGAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* *
16109354 TTAATGCCAATTTTTAAAGAGATTACATATGATTCTAAAATTCAAAACA
66 TTAATACCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACA
16109403 GGGACTCCAC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 107 1.00
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.29
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
TTAATACCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
TCCAGACG
Found at i:16111067 original size:7 final size:7
Alignment explanation
Indices: 16111057--16111095 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
16111047 AAATATTAAT
16111057 TTTTTTA
1 TTTTTTA
16111064 TTTTTTA
1 TTTTTTA
16111071 TTTTTTA
1 TTTTTTA
16111078 TTTTTTA
1 TTTTTTA
16111085 TTTTTTA
1 TTTTTTA
16111092 TTTT
1 TTTT
16111096 AAAATTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:16111103 original size:21 final size:21
Alignment explanation
Indices: 16111058--16111104 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
16111048 AATATTAATT
** *
16111058 TTTTTATTTTTTATTTTTTAT
1 TTTTTATTTTTTATTTTAAAA
16111079 TTTTTATTTTTTATTTTAAAA
1 TTTTTATTTTTTATTTTAAAA
16111100 TTTTT
1 TTTTT
16111105 TTGAAGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTATTTTTTATTTTAAAA
Found at i:16111772 original size:14 final size:14
Alignment explanation
Indices: 16111753--16111780 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
16111743 AACTCATACA
16111753 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
16111767 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
16111781 TATAATGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (14 bp):
CTTAAACCCTAAAC
Found at i:16111949 original size:7 final size:7
Alignment explanation
Indices: 16111938--16111975 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
16111928 CTGAACCATG
16111938 AACCCCT
1 AACCCCT
* *
16111945 CACCCTT
1 AACCCCT
16111952 AACCCCT
1 AACCCCT
16111959 AACCCCT
1 AACCCCT
16111966 AACCCCT
1 AACCCCT
16111973 AAC
1 AAC
16111976 ACTTAAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.55, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCCT
Found at i:16112267 original size:41 final size:40
Alignment explanation
Indices: 16112190--16112276 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
16112180 TCAAATACAT
16112190 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATA
* * * **
16112231 TTAAAACAATTATTAAAACAATAGACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
*
16112271 ATAAAA
1 TTAAAA
16112277 AGTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 8 0.20
41 32 0.80
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.23
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:16112542 original size:41 final size:41
Alignment explanation
Indices: 16112478--16112697 Score: 316
Period size: 41 Copynumber: 5.4 Consensus size: 41
16112468 ATTATCTGAC
* * *
16112478 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTACTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
16112519 TTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
16112560 TTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGTTTTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
16112601 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
16112642 TTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGGT
*
16112683 TTTTAGCGGCATTTT
1 TTTTAGCGGCGTTTT
16112698 TTGTAAAACG
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 143 0.88
42 19 0.12
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:16113071 original size:80 final size:80
Alignment explanation
Indices: 16112878--16113102 Score: 378
Period size: 80 Copynumber: 2.8 Consensus size: 80
16112868 AAGTATTGAC
*
16112878 TTTTAATTGGTTATATTATGCATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTATTT
1 TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACT-TTT
* *
16112943 TTTTTTTCTAATAATA
65 TTTTTTCCTAACAATA
* *
16112959 TTTTAATTGGTTATATTATGGATAGATAGTATCAATACACTGTGGCAATTATGGATTGACTTTTT
1 TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTTTTT
16113024 TTTTTCCTAACAATA
66 TTTTTCCTAACAATA
* *
16113039 TTTTATTTGGTTATATTATGGATTGATAGTATCAATACACTGTCACAATTATGGATTGACTTTT
1 TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTTTT
16113103 AATTTTTTTT
Statistics
Matches: 135, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
80 77 0.57
81 58 0.43
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (80 bp):
TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTTTTT
TTTTTCCTAACAATA
Found at i:16114054 original size:18 final size:19
Alignment explanation
Indices: 16114014--16114057 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
16114004 CAATCCTTTT
*
16114014 AAATTTTAAAAAAATCATAA
1 AAATTATAAAAAAA-CATAA
*
16114034 AAATTATAAAAAAA-ATTA
1 AAATTATAAAAAAACATAA
16114052 AAATTA
1 AAATTA
16114058 GGTAAGATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
20 13 0.59
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATTATAAAAAAACATAA
Found at i:16114690 original size:6 final size:6
Alignment explanation
Indices: 16114679--16114732 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
16114669 ATTCATTATC
* *
16114679 AAATAA AAATAA AAATAA AAATATA GAATCAA AACT-A AAATAA ATAATAA
1 AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA AAATAA A-AATAA
16114729 AAAT
1 AAAT
16114733 TAGATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.10
6 22 0.55
7 13 0.32
8 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:16119159 original size:7 final size:7
Alignment explanation
Indices: 16119134--16119248 Score: 54
Period size: 7 Copynumber: 16.1 Consensus size: 7
16119124 ACTAATTAAT
16119134 CTAAACC
1 CTAAACC
*
16119141 CTAAATCT
1 CTAAA-CC
*
16119149 CTTAACC
1 CTAAACC
* *
16119156 CTTATCC
1 CTAAACC
*
16119163 CATAAACA
1 C-TAAACC
*
16119171 CTAAACT
1 CTAAACC
16119178 CTAAACC
1 CTAAACC
*
16119185 CTTAACC
1 CTAAACC
*
16119192 CCAAACC
1 CTAAACC
*
16119199 CTTACACC
1 C-TAAACC
*
16119207 TTAAACTC
1 CTAAAC-C
16119215 C--AACC
1 CTAAACC
*
16119220 CTAACCC
1 CTAAACC
*
16119227 CTAAATC
1 CTAAACC
* *
16119234 ATAATCC
1 CTAAACC
16119241 CTAAACC
1 CTAAACC
16119248 C
1 C
16119249 ATAATTCATC
Statistics
Matches: 77, Mismatches: 25, Indels: 12
0.68 0.22 0.11
Matches are distributed among these distances:
5 2 0.03
6 3 0.04
7 58 0.75
8 14 0.18
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:16119317 original size:21 final size:21
Alignment explanation
Indices: 16119291--16119375 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
16119281 ACTCCTAAAC
*
16119291 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * *
16119312 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
16119337 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
16119358 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
16119376 AACTATAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:16119328 original size:46 final size:46
Alignment explanation
Indices: 16119275--16119364 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
16119265 CTTCAAATAC
*
16119275 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
16119321 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
16119365 CATAAACCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
Done.