Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 59 of 373
Found at i:17733417 original size:2 final size:2
Alignment explanation
Indices: 17733402--17733808 Score: 287
Period size: 2 Copynumber: 199.0 Consensus size: 2
17733392 CAAATGCAAG
* *
17733402 AT AT AT GAT CT AT AT AT AT AG AT AT GAT AT AT AT CAT AT AT CAT
1 AT AT AT -AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT -AT
* * * * *
17733446 AT CT AT AT AT CT AT AT AT CT AT AT AT -T AT CT AT AT -T AT CT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
17733486 AT AT AT AT AT AA ACT AT AT CT AT AT AT AT AT GAT AT AT AT GAT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT -AT AT AT AT -AT
* * *
17733529 AT AG AT A- AT AT AT AT -T AT CT AT AT AT AT AT GGT AT AT AT GAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT
* * *
17733571 AT AT AT AT CAT AT AT -T AT CT AT CT AT AT AT AT -T AT CT AT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
17733612 AC AT AT GAT AT AT AT AT AG AT AT GAT AT AT GAT AT AT AT CAT AT
1 AT AT AT -AT AT AT AT AT AT AT AT -AT AT AT -AT AT AT AT -AT AT
* * *
17733656 CT AT AT AT AT AT AG AT A- AT AT AT AT AT CAT AT AT -T AT CT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
* * * *
17733697 CT AT AT AT AT -T AT CT AT AT AC AT AT GAT AT AT AT AT AG AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT
* * *
17733738 AT AT AG AT A- AT AT AT AG AT AT AT AG AT AT GAT AT AT GAT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT -AT AT AT
* * *
17733781 GT CAT AT CT AT AT AT AT AG AT CAT AT AT
1 AT -AT AT AT AT AT AT AT AT AT -AT AT AT
17733809 CTTGCATTTG
Statistics
Matches: 314, Mismatches: 60, Indels: 62
0.72 0.14 0.14
Matches are distributed among these distances:
1 11 0.04
2 266 0.85
3 37 0.12
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:17733418 original size:13 final size:13
Alignment explanation
Indices: 17733402--17733808 Score: 126
Period size: 13 Copynumber: 32.3 Consensus size: 13
17733392 CAAATGCAAG
17733402 ATATATGATCTAT
1 ATATATGATCTAT
17733415 ATATATAGA--TAT
1 ATATAT-GATCTAT
17733427 GATATAT-ATC-AT
1 -ATATATGATCTAT
17733439 ATATCAT-ATCTAT
1 ATAT-ATGATCTAT
* *
17733452 ATATCT-ATATAT
1 ATATATGATCTAT
*
17733464 CTATAT-AT-TAT
1 ATATATGATCTAT
* *
17733475 CTATATTATCTAT
1 ATATATGATCTAT
*
17733488 ATATAT-A--TAA
1 ATATATGATCTAT
* *
17733498 ACTATAT-CTATAT
1 A-TATATGATCTAT
*
17733511 ATATATGATATAT
1 ATATATGATCTAT
*
17733524 ATGATATAGAT-AAT
1 AT-ATAT-GATCTAT
*
17733538 ATATATTATCTAT
1 ATATATGATCTAT
**
17733551 ATATAT-AT-GGT
1 ATATATGATCTAT
17733562 ATATATGA--TAT
1 ATATATGATCTAT
* *
17733573 ATATATCATATAT
1 ATATATGATCTAT
*
17733586 -TATCT-ATCTAT
1 ATATATGATCTAT
*
17733597 ATATATTATCTAT
1 ATATATGATCTAT
*
17733610 ATACATATGATATAT
1 AT--ATATGATCTAT
17733625 ATATA-GA--TAT
1 ATATATGATCTAT
*
17733635 GATATATGATATAT
1 -ATATATGATCTAT
* *
17733649 ATCATAT-CTATAT
1 AT-ATATGATCTAT
*
17733662 ATATATAGAT-AAT
1 ATATAT-GATCTAT
17733675 ATATAT-ATC-AT
1 ATATATGATCTAT
*
17733686 ATATTATCTATCTAT
1 ATA-TAT-GATCTAT
*
17733701 ATATATTATCTAT
1 ATATATGATCTAT
*
17733714 ATACATATGATATAT
1 AT--ATATGATCTAT
17733729 ATATA-GA--TA-
1 ATATATGATCTAT
*
17733738 ATATA-GAT-AAT
1 ATATATGATCTAT
*
17733749 ATATA-GATATAT
1 ATATATGATCTAT
* *
17733761 AGATATGATATAT
1 ATATATGATCTAT
17733774 GATATATGTCATATCTAT
1 -ATATATG----ATCTAT
17733792 ATATATAGATC-AT
1 ATATAT-GATCTAT
17733805 ATAT
1 ATAT
17733809 CTTGCATTTG
Statistics
Matches: 316, Mismatches: 32, Indels: 92
0.72 0.07 0.21
Matches are distributed among these distances:
9 7 0.02
10 9 0.03
11 59 0.19
12 62 0.20
13 104 0.33
14 33 0.10
15 30 0.09
17 6 0.02
18 6 0.02
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (13 bp):
ATATATGATCTAT
Found at i:17733793 original size:104 final size:103
Alignment explanation
Indices: 17733412--17733795 Score: 389
Period size: 104 Copynumber: 3.7 Consensus size: 103
17733402 ATATATGATC
* * * * *
17733412 TATATATATAGATATGATATATATCATATAT-CATATCTATATAT-CTATAT-ATCTATATATTA
1 TATATATATAGATA--ATATAGATAATATATACATATATATATATGATATATGATATAT-TA-TA
* *
17733474 TC-TATATTATCTA--TATATATATAAACTATAT-CTATAT-A
62 TCATATATTATCTATCTATATATATTATCTATATAC-ATATGA
* * *
17733512 TATATGATATATATGATATAGATAATATATATTATCTATATATATATGGTATATATGATATA-TA
1 TATAT-ATATAGATAATATAGATAATATATA-CA--TATATATATAT-G-ATATATGATATATTA
17733576 TATCATATATTATCTATCTATATATATTATCTATATACATATGA
60 TATCATATATTATCTATCTATATATATTATCTATATACATATGA
*
17733620 TATATATATAGATATGATATATGAT-ATATAT-CATATCTATATAT-ATATA-GATAATATATAT
1 TATATATATAGATA--ATATA-GATAATATATACATATATATATATGATATATGAT-ATAT-TAT
17733681 ATCATATATTATCTATCTATATATATTATCTATATACATATGA
61 ATCATATATTATCTATCTATATATATTATCTATATACATATGA
* *
17733724 TATATATATAGATAATATAGATAATATATAGATATATAGATATGATATATGATATATGTCATATC
1 TATATATATAGATAATATAGATAATATATACATATATATATATGATATATGATATAT-T-ATATC
17733789 TATATAT
64 -ATATAT
17733796 ATAGATCATA
Statistics
Matches: 240, Mismatches: 18, Indels: 46
0.79 0.06 0.15
Matches are distributed among these distances:
99 13 0.05
100 5 0.02
101 14 0.06
102 19 0.08
103 20 0.08
104 74 0.31
105 31 0.13
106 11 0.05
107 32 0.13
108 7 0.03
109 11 0.05
110 3 0.01
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.45
Consensus pattern (103 bp):
TATATATATAGATAATATAGATAATATATACATATATATATATGATATATGATATATTATATCAT
ATATTATCTATCTATATATATTATCTATATACATATGA
Found at i:17733799 original size:65 final size:64
Alignment explanation
Indices: 17733507--17733808 Score: 254
Period size: 65 Copynumber: 4.5 Consensus size: 64
17733497 AACTATATCT
* * * *
17733507 ATATATAT-ATGATATATATGATATAGATAATATATATTATCTATATATATATGGTATATATGAT
1 ATATATATCAT-ATCTATAT-ATATAGATAATATATA-TA-ATATATA-ATAT-ATAGATATGAT
17733571 ATAT-
60 ATATG
* * * *
17733575 ATATCATAT-ATTATCTATCTATATATATTATCTATATACATATGATATATATATAGATATGATA
1 ATAT-ATATCA-TATCTATATATATAGATAATATATATA-ATAT-ATA-ATATATAGATATGATA
17733639 TATG
61 TATG
* * **
17733643 ATATATATCATATCTATATATATATAGATAATATATAT-ATCATATATTATCTATCTAT-ATATA
1 ATATATATCATATC--TATATATATAGATAATATATATAAT-ATATAATATATAGATATGATATA
*
17733706 TT
63 TG
* * *
17733708 ATCTATATACATATGATATATATATAGATAATATAGATAATATATAGATATATAGATATGATATA
1 ATATATAT-CATAT-CTATATATATAGATAATATATATAATATATA-ATATATAGATATGATATA
17733773 TG
63 TG
* *
17733775 ATATATGTCATATCTATATATATAGATCATATAT
1 ATATATATCATATCTATATATATAGATAATATAT
17733809 CTTGCATTTG
Statistics
Matches: 190, Mismatches: 31, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
65 57 0.30
66 28 0.15
67 43 0.23
68 32 0.17
69 29 0.15
70 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (64 bp):
ATATATATCATATCTATATATATAGATAATATATATAATATATAATATATAGATATGATATATG
Found at i:17733808 original size:11 final size:10
Alignment explanation
Indices: 17733413--17733780 Score: 119
Period size: 11 Copynumber: 35.6 Consensus size: 10
17733403 TATATGATCT
17733413 ATATATATAG
1 ATATATATAG
*
17733423 ATATGATATAT
1 ATAT-ATATAG
*
17733434 ATCATATATCAT
1 AT-ATATAT-AG
* *
17733446 ATCTATATAT
1 ATATATATAG
* **
17733456 CTATATATCT
1 ATATATATAG
**
17733466 ATATATTATCT
1 ATATA-TATAG
* *
17733477 ATATTATCTAT
1 ATA-TATATAG
*
17733488 ATATATATAA
1 ATATATATAG
* *
17733498 ACTATATCTAT
1 A-TATATATAG
17733509 ATATATAT-G
1 ATATATATAG
17733518 ATATATAT-G
1 ATATATATAG
*
17733527 ATATAGATA-
1 ATATATATAG
*
17733536 ATATATATTATCT
1 ATATATA-TA--G
17733549 ATATATATATG
1 ATATATATA-G
*
17733560 GTATATAT-G
1 ATATATATAG
*
17733569 ATATATATATC
1 ATATATATA-G
*
17733580 ATATAT-TAT
1 ATATATATAG
* * *
17733589 CTATCTATAT
1 ATATATATAG
* *
17733599 ATATTATCTAT
1 ATA-TATATAG
* *
17733610 ATACATATGAT
1 ATATATAT-AG
17733621 ATATATATAG
1 ATATATATAG
17733631 ATATGATATATG
1 ATAT-ATATA-G
*
17733643 ATATATAT-C
1 ATATATATAG
*
17733652 ATATCTAT--
1 ATATATATAG
17733660 ATATATATAG
1 ATATATATAG
*
17733670 ATAATATATAT
1 AT-ATATATAG
*
17733681 ATCATATATTAT
1 AT-ATATA-TAG
* * *
17733693 CTATCTATAT
1 ATATATATAG
* *
17733703 ATATTATCTAT
1 ATA-TATATAG
* *
17733714 ATACATATGAT
1 ATATATAT-AG
17733725 ATATATATAG
1 ATATATATAG
17733735 ATA-ATATAG
1 ATATATATAG
17733744 ATAATATATAG
1 AT-ATATATAG
17733755 --ATATATAG
1 ATATATATAG
17733763 ATATGATATATG
1 ATAT-ATATA-G
17733775 ATATAT
1 ATATAT
17733781 GTCATATCTA
Statistics
Matches: 283, Mismatches: 45, Indels: 59
0.73 0.12 0.15
Matches are distributed among these distances:
8 15 0.05
9 49 0.17
10 63 0.22
11 125 0.44
12 24 0.08
13 7 0.02
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.45
Consensus pattern (10 bp):
ATATATATAG
Found at i:17736071 original size:14 final size:14
Alignment explanation
Indices: 17736031--17736067 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
17736021 ATTCAAAACA
17736031 TTTATAAAAATTAT
1 TTTATAAAAATTAT
17736045 TTTATAAAAATTAT
1 TTTATAAAAATTAT
17736059 TTT-TAAAAA
1 TTTATAAAAA
17736068 ATTAAAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTATAAAAATTAT
Found at i:17742083 original size:37 final size:37
Alignment explanation
Indices: 17742033--17742111 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
17742023 TTATTACGAA
* * * *
17742033 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
17742070 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
17742107 GTCTT
1 GTCTT
17742112 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:17742304 original size:49 final size:48
Alignment explanation
Indices: 17742230--17742667 Score: 706
Period size: 47 Copynumber: 9.1 Consensus size: 48
17742220 CCCTTCGGGA
* * * * * *
17742230 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
17742277 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742326 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742373 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
17742420 CCTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742469 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742518 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742565 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742614 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17742661 CTTATCA
1 CTTATCA
17742668 TCATTTCATA
Statistics
Matches: 369, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 191 0.52
49 178 0.48
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (48 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:17742434 original size:96 final size:95
Alignment explanation
Indices: 17742230--17742667 Score: 725
Period size: 96 Copynumber: 4.6 Consensus size: 95
17742220 CCCTTCGGGA
* * * * * * * *
17742230 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
17742295 ACTTCCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
17742326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
17742390 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* *
17742420 CCTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
17742485 ACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
17742518 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
17742583 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
17742614 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
17742668 TCATTTCATA
Statistics
Matches: 324, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 45 0.14
96 233 0.72
98 46 0.14
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:17745103 original size:3 final size:3
Alignment explanation
Indices: 17745095--17745171 Score: 59
Period size: 3 Copynumber: 25.7 Consensus size: 3
17745085 ATTTTTAAAG
** ** *
17745095 TTA TTA TTA CCA TTA TTA TTA TTA TTA TTA CCA TT- TTT TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
17745140 TTA TTA TT- TGTA TTA TTG TTG TTA TTA TTA TT
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
17745172 CTTGATTTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
2 3 0.05
3 52 0.88
4 4 0.07
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:17745121 original size:21 final size:20
Alignment explanation
Indices: 17745095--17745145 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
17745085 ATTTTTAAAG
17745095 TTATTATTACCATTATTATTA
1 TTATTATTACCATT-TTATTA
*
17745116 TTATTATTACCATTTTTTTA
1 TTATTATTACCATTTTATTA
17745136 TGTATTATTA
1 T-TATTATTA
17745146 TTTGTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (20 bp):
TTATTATTACCATTTTATTA
Found at i:17745278 original size:43 final size:46
Alignment explanation
Indices: 17745194--17745289 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 46
17745184 ATTAATACAC
* * *
17745194 TATTATT-CTTCATTTTTTTATATTATTATTATCCTTGTTAACATAT
1 TATTATTATTTCATTTTTTTATATTATCATTATCC-TATTAACATAT
*
17745240 T-TTATTATTTCATTTTTTTATATTATCGTTAT-C-ATTAACATAT
1 TATTATTATTTCATTTTTTTATATTATCATTATCCTATTAACATAT
17745283 TATTATT
1 TATTATT
17745290 CTTATTACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
43 10 0.23
44 5 0.11
45 6 0.14
46 23 0.52
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.61
Consensus pattern (46 bp):
TATTATTATTTCATTTTTTTATATTATCATTATCCTATTAACATAT
Found at i:17747502 original size:26 final size:26
Alignment explanation
Indices: 17747473--17747580 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
17747463 TGGTACAAAT
17747473 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
17747499 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17747525 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
17747551 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17747577 TGAT
1 TGAT
17747581 GGGCATTTAA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:17752695 original size:15 final size:16
Alignment explanation
Indices: 17752659--17752688 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
17752649 ACATATCATT
17752659 TATTTCATTATATCAA
1 TATTTCATTATATCAA
17752675 TATTTCA-TATATCA
1 TATTTCATTATATCA
17752689 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:17754642 original size:30 final size:30
Alignment explanation
Indices: 17754608--17754668 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
17754598 TCCTTAACTC
17754608 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
17754638 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
17754668 A
1 A
17754669 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:17758687 original size:44 final size:42
Alignment explanation
Indices: 17758540--17758789 Score: 182
Period size: 44 Copynumber: 5.8 Consensus size: 42
17758530 CGGTGAATTC
* * * * *
17758540 ACAGATCTTATTTCCCTAAGTAGTAGTGGAGCAAATCGAAGACG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT-GTAGA-T
* * * * * * *
17758584 GC-GAATCTTGTCTCTCTAAGTAGTATTGGAGCAGATTTA-AG
1 ACAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATGTAGAT
* * * * * *
17758625 CCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGCCTGAAGATT
1 ACA-GATCTTATCTCCCTAAGCAGTAGTGGAGCAG-ATGTAGA-T
*
17758670 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGTAGAC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT-GTAGAT
* * *
17758713 AGCGGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTA-AT
1 A-CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATGTAGAT
* *
17758755 CCATCATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 ACA-GATCTTATCTCCCTAAGCAGTAGTGGAGCAG
17758790 GTTGAAATCA
Statistics
Matches: 162, Mismatches: 35, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
41 3 0.02
42 55 0.34
43 8 0.05
44 94 0.58
45 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (42 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATGTAGAT
Found at i:17758700 original size:86 final size:86
Alignment explanation
Indices: 17758629--17758789 Score: 207
Period size: 86 Copynumber: 1.8 Consensus size: 86
17758619 TTTAAGCCAC
* * *
17758629 CATCCTATCTCCCTAAGCAGTAGTGGAGTAGCCTGAAGATTACA-GATCTTATCTCCCTAAGCAG
1 CATCCTATCTCCCTAAGCAGTAGTGGAGCAG-ATGAA-A-TACATCATCTTATCTCCCTAAGCAG
17758693 TAGTGGAGCAGATCGTAGACAGCG
63 TAGTGGAGCAGATCGTAGACAGCG
* * * ** *
17758717 GATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAATCCATCATCTTATCTCCCTAAGCAGTAG
1 CATCCTATCTCCCTAAGCAGTAGTGGAGCAGATGAAATACATCATCTTATCTCCCTAAGCAGTAG
17758782 TGGAGCAG
66 TGGAGCAG
17758790 GTTGAAATCA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 3 0.05
86 31 0.49
87 2 0.03
88 27 0.43
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (86 bp):
CATCCTATCTCCCTAAGCAGTAGTGGAGCAGATGAAATACATCATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGTAGACAGCG
Found at i:17758744 original size:130 final size:130
Alignment explanation
Indices: 17758540--17758786 Score: 386
Period size: 130 Copynumber: 1.9 Consensus size: 130
17758530 CGGTGAATTC
* * * * *
17758540 ACAGATCTTATTTCCCTAAGTAGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTCTCTAAGT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
*
17758605 AGTATTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGCCTGAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGCCTGAAGATT
* * *
17758670 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGTAGACAGCGGATCTTGTCTCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
* * *
17758735 AGTAGTGGAGCAGATTTAATCCATCATCTTATCTCCCTAAGCAGTAGTGGAG
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAG
17758787 CAGGTTGAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 105 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (130 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGCCTGAAGATT
Found at i:17758809 original size:130 final size:130
Alignment explanation
Indices: 17758540--17758814 Score: 374
Period size: 130 Copynumber: 2.1 Consensus size: 130
17758530 CGGTGAATTC
* * * * *
17758540 ACAGATCTTATTTCCCTAAGTAGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTCTCTAAGT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
* * *
17758605 AGTATTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGCCTGAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGCCTGAAGATA
* * *
17758670 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGTAGACAGCGGATCTTGTCTCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
* * * **
17758735 AGTAGTGGAGCAGATTTAATCCATCATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAA-ATC
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGCCTGAAGAT-
17758799 A
130 A
17758800 ACA-ATTCTTATCTCC
1 ACAGA-TCTTATCTCC
17758815 TGAAAGTTCC
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
129 3 0.02
130 124 0.98
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (130 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGCCTGAAGATA
Found at i:17758892 original size:88 final size:88
Alignment explanation
Indices: 17758800--17759492 Score: 913
Period size: 88 Copynumber: 7.8 Consensus size: 88
17758790 GTTGAAATCA
* * *
17758800 ACAATTCTTATCTCC-TGAAAGTTCCAGTGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAA
1 ACAATTCGTATCTCCTTG-AAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
17758864 ATGGCACTGGAGCGGCTCGAAGCC
65 ATGGCACTGGAGCGGCTCGAAGCC
* * * * *
17758888 ACAATTCGTATCCCCTTAAAGTTTCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
17758953 TGGCATTGGAGCAGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
17758976 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
17759041 TGGCACTGGAGTGGCTCGAAGCTCGAAGCC
66 TGGCACTGGA---G--CG--GCTCGAAGCC
* ** * *
17759071 ACAATTCGCATCTCCTTGAAGTTTTAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCTCT-AAG
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA-
*
17759135 ATGGCATTGGAGCGGCTCGAAGCC
65 ATGGCACTGGAGCGGCTCGAAGCC
* * * ** *
17759159 ACAATTCATATCTCCTTGAAGTTCTAACGGAGTAGATCGAAGCTGTAAATCTTTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
17759224 TGGCACTAGAGCGGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * * * *
17759247 ACAATTCATATCTCCTTGTAGTTTCTGCTGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * * *
17759312 TGGCACTAGAGTGGCTCAAAGCT
66 TGGCACTGGAGCGGCTCGAAGCC
* **
17759335 ACAATTCGTATCTCCTTGAAGTTCCAACGGAGTAGATTAAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
17759400 TGGTACTGGAGCGGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * * * * *
17759423 ACAATTCATATCTCCTTAAAGTTCTAGCAGAGTAGATCGAAGCTACAAGTCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
17759488 TGGCA
66 TGGCA
17759493 TTAGAGTGAT
Statistics
Matches: 528, Mismatches: 67, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
88 442 0.84
89 3 0.01
90 2 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 2 0.00
95 76 0.14
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCACTGGAGCGGCTCGAAGCC
Found at i:17758963 original size:44 final size:44
Alignment explanation
Indices: 17758827--17759492 Score: 298
Period size: 44 Copynumber: 15.0 Consensus size: 44
17758817 AAAGTTCCAG
* *
17758827 TGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
** * * * ** *
17758871 TGGAGCGGCTCGAAGCCAC-AAT-TCGTATCCCCTT-AAAGTTTCAG
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCTTGAAA-TGGCAC
*
17758915 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAT
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
* * * * **
17758959 TGGAGCAGCTCGAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAGC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCA-C
*
17759004 -GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
* * * * * *** *
17759047 TGGAGTGGCTCGAAGCTCGAAGCCACAATTCGCATCTCCTTGAAGTTTTAG
1 TGGAGTAGATCGAAGCT---A--CA-AA-TCTCTTCTCCTTGAAATGGCAC
*
17759098 TGGAGTAGATCGAAGCTACAAATCTCTTCT-CTCT-AAGATGGCAT
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCT-TGAA-ATGGCAC
** * * * *
17759142 TGGAGCGGCTCGAAGCCAC-AAT-TCATATCTCCTTGAAGT-TCTAAC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGC--AC
** * *
17759187 -GGAGTAGATCGAAGCTGTAAATCTTTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
* ** * * * * ** *
17759230 TAGAGCGGCTCGAAGCCAC-AAT-TCATATCTCCTTGTAGTTTCTGC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGC-AC
*
17759275 T-GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
* * * * * **
17759318 TAGAGTGGCTCAAAGCTAC-AAT-TCGTATCTCCTTGAAGTTCCAAC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGC-AC
** * *
17759363 -GGAGTAGATTAAAGCTACAAATCTCTTCTCCCTGAAATGGTAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
** * * *
17759406 TGGAGCGGCTCGAAGCCAC-AAT-TCATATCTCCTT-AAA-GTTCTAGC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCTTGAAATG-GC-A-C
* *
17759451 -AGAGTAGATCGAAGCTACAAGTCTCTTCTCCTTGAAATGGCA
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCA
17759493 TTAGAGTGAT
Statistics
Matches: 446, Mismatches: 124, Indels: 104
0.66 0.18 0.15
Matches are distributed among these distances:
42 12 0.03
43 42 0.09
44 300 0.67
45 43 0.10
46 14 0.03
47 1 0.00
48 1 0.00
49 2 0.00
50 2 0.00
51 29 0.07
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (44 bp):
TGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCAC
Found at i:17759625 original size:45 final size:43
Alignment explanation
Indices: 17759516--17759666 Score: 185
Period size: 44 Copynumber: 3.4 Consensus size: 43
17759506 AGCTATAAAC
* *
17759516 CTTATCCCCTGAAGTTGTAGTGGGGCAAGTAGAAGTTACGAGT
1 CTTATCCCCTGAAGTTGCAGTGGGGCAAGTTGAAGTTACGAGT
* * *
17759559 CCTATCCCCTTGAAGCTGCAGTGGGGCAGGTTGAAGTTACGAGT
1 CTTATCCCC-TGAAGTTGCAGTGGGGCAAGTTGAAGTTACGAGT
* *
17759603 CATTATCCCTCTGAAGTTGCAGTGGGGAAAGTTGAGAAGTTACAAGT
1 C-TTATCCC-CTGAAGTTGCAGTGGGGCAAGTT--GAAGTTACGAGT
17759650 CTTATCTCCCTGAAGTT
1 CTTATC-CCCTGAAGTT
17759667 ACAATAGAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
43 8 0.09
44 31 0.34
45 25 0.27
46 14 0.15
47 14 0.15
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CTTATCCCCTGAAGTTGCAGTGGGGCAAGTTGAAGTTACGAGT
Found at i:17759685 original size:91 final size:88
Alignment explanation
Indices: 17759517--17759685 Score: 196
Period size: 91 Copynumber: 1.9 Consensus size: 88
17759507 GCTATAAACC
* * * * * *
17759517 TTATCCCCTGAAGTTGTAGTGGGGCAAGTAGAAGTTACGAGTCCTATCCCCTTGAAGCTGCAGTG
1 TTATCCCCTGAAGTTGCAGTGGGGAAAGTAGAAGTTACAAGTCCTATCCCCTTGAAGCTACAATA
* **
17759582 GGGCAGGTTGAAGTTACGAGTCA
66 GAGCAGACTGAAGTTACGAGTCA
* *
17759605 TTATCCCTCTGAAGTTGCAGTGGGGAAAGTTGAGAAGTTACAAGTCTTATCTCCC-TGAAGTTAC
1 TTATCCC-CTGAAGTTGCAGTGGGGAAAG-T-AGAAGTTACAAGTCCTATC-CCCTTGAAGCTAC
17759669 AATAGAGCAGACTGAAG
62 AATAGAGCAGACTGAAG
17759686 AAAGCATATC
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
88 7 0.11
89 19 0.29
90 1 0.02
91 36 0.55
92 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (88 bp):
TTATCCCCTGAAGTTGCAGTGGGGAAAGTAGAAGTTACAAGTCCTATCCCCTTGAAGCTACAATA
GAGCAGACTGAAGTTACGAGTCA
Found at i:17767752 original size:21 final size:21
Alignment explanation
Indices: 17767713--17767754 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
17767703 TTTATTTTCT
* * *
17767713 CACACATACATATATAAAAAA
1 CACACATAAAAATAAAAAAAA
17767734 CACACATAAAAATAAAAAAAA
1 CACACATAAAAATAAAAAAAA
17767755 TAAAAAGGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.14
Consensus pattern (21 bp):
CACACATAAAAATAAAAAAAA
Found at i:17768351 original size:3 final size:3
Alignment explanation
Indices: 17768343--17768424 Score: 53
Period size: 3 Copynumber: 27.0 Consensus size: 3
17768333 TTTTTTATAT
* * * *
17768343 TTA TTA TTA TTA -TG TTA TTTA TTG TTA TTA TTA -CA TTT TTA TATA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
17768388 TATA ATA TT- TATA TTA TTA CTA TTA TTA TTA TTA TTA
1 T-TA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
17768425 GCATTATTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
2 3 0.05
3 48 0.79
4 10 0.16
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:17768363 original size:18 final size:18
Alignment explanation
Indices: 17768340--17768424 Score: 72
Period size: 18 Copynumber: 4.8 Consensus size: 18
17768330 CTGTTTTTTA
*
17768340 TATTTATTATTATTATGT
1 TATTTATTATTATTATAT
*
17768358 TATTTATTGTTATTAT-T
1 TATTTATTATTATTATAT
* *
17768375 ACATTT-TTA-TATATATAA
1 -TATTTATTATTAT-TATAT
17768393 TATTTA-TATTATTACTAT
1 TATTTATTATTATTA-TAT
17768411 TA-TTATTATTATTA
1 TATTTATTATTATTA
17768425 GCATTATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
16 3 0.06
17 17 0.31
18 34 0.63
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TATTTATTATTATTATAT
Found at i:17768540 original size:26 final size:26
Alignment explanation
Indices: 17768511--17768568 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
17768501 ATGTTACTTT
*
17768511 TATTCTTAATA-TATATTATGTATACA
1 TATT-TTAATACTATATTAAGTATACA
* *
17768537 TATTTTAATACTATGTTAAGTATATA
1 TATTTTAATACTATATTAAGTATACA
17768563 T-TTTTA
1 TATTTTA
17768569 TTATGTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.53
Consensus pattern (26 bp):
TATTTTAATACTATATTAAGTATACA
Found at i:17768651 original size:24 final size:26
Alignment explanation
Indices: 17768624--17768684 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 26
17768614 ATATATCATC
17768624 TTATGTATATATTCTTAAATA-C-TA
1 TTATGTATATATTCTTAAATAGCATA
* *
17768648 TTA--TATATATTTTTTAATAGCATA
1 TTATGTATATATTCTTAAATAGCATA
*
17768672 TTGTGTATATATT
1 TTATGTATATATT
17768685 ATTATTACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 14 0.47
23 1 0.03
24 7 0.23
26 8 0.27
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (26 bp):
TTATGTATATATTCTTAAATAGCATA
Found at i:17768689 original size:3 final size:3
Alignment explanation
Indices: 17768681--17768739 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
17768671 ATTGTGTATA
* ** * *
17768681 TAT TAT TAT TACT AAT TAT TAT TAT TGC TAG TAT TGT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17768727 TAT TAT TA- TAT TA
1 TAT TAT TAT TAT TA
17768740 GTGTATATCT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.91
4 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:17769085 original size:27 final size:27
Alignment explanation
Indices: 17769031--17769081 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
17769021 ATATTTACCC
* *
17769031 TTTTTACTATTATTACCTATTATTTTA
1 TTTTTAATATTATTAACTATTATTTTA
17769058 TTTTTAATATTATTAA--ATTATTTT
1 TTTTTAATATTATTAACTATTATTTT
17769082 TTATATTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTAATATTATTAACTATTATTTTA
Found at i:17770561 original size:17 final size:17
Alignment explanation
Indices: 17770539--17770572 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
17770529 TTGGCTTGTC
17770539 CTTTTTT-TTTTTGTTTT
1 CTTTTTTCTTTTT-TTTT
17770556 CTTTTTTCTTTTTTTTT
1 CTTTTTTCTTTTTTTTT
17770573 GCTTATGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (17 bp):
CTTTTTTCTTTTTTTTT
Found at i:17774349 original size:12 final size:12
Alignment explanation
Indices: 17774316--17774340 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17774306 AAAAAATTGA
17774316 AATAAATAAGTG
1 AATAAATAAGTG
17774328 AATAAATAAGTG
1 AATAAATAAGTG
17774340 A
1 A
17774341 GTAATTAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (12 bp):
AATAAATAAGTG
Found at i:17774921 original size:61 final size:59
Alignment explanation
Indices: 17774812--17774927 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 59
17774802 ATCACTTTCA
* * * *
17774812 TATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAAT-TTAAATCT
1 TATTAAAATAATAAAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
17774870 TATTAAAATAATAAAATATTTACCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAAAATATTTA--T-CAAGATAAACATTAAATTAAATTTAATATTAA
17774928 GATAATCACT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
58 20 0.40
60 1 0.02
61 25 0.50
62 4 0.08
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (59 bp):
TATTAAAATAATAAAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:17774953 original size:20 final size:18
Alignment explanation
Indices: 17774906--17774954 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
17774896 CAAGATAAAC
17774906 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
17774923 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
17774943 ATTAAATTAATA
1 ATTAAATTAATA
17774955 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:17777758 original size:27 final size:27
Alignment explanation
Indices: 17777710--17777868 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
17777700 GCGAGGCTGC
* *
17777710 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
17777737 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
17777763 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
17777790 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
17777817 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
17777844 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
17777869 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:17777869 original size:54 final size:54
Alignment explanation
Indices: 17777728--17777871 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
17777718 GTGACGAAGT
* *
17777728 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
17777782 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
17777836 CACCAGATTAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
17777872 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:17779499 original size:26 final size:26
Alignment explanation
Indices: 17779468--17779575 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
17779458 TGAAATGCCC
*
17779468 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
17779494 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
17779520 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
17779546 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
17779572 ATCA
1 ATCA
17779576 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:17783656 original size:25 final size:24
Alignment explanation
Indices: 17783628--17783709 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
17783618 CGAATACTCA
17783628 ATAGCTCATGAGAACATACCGATTT
1 ATAGCTCATGAG-ACATACCGATTT
* * *
17783653 ATAGCTCGTGAGAGCATATCGATCT
1 ATAGCTCATGAGA-CATACCGATTT
17783678 ATAGCTCAAATGAG-CATACCGATTT
1 ATAGCTC--ATGAGACATACCGATTT
*
17783703 ACAGCTC
1 ATAGCTC
17783710 GTAGGAGCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
24 1 0.02
25 42 0.89
27 4 0.09
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (24 bp):
ATAGCTCATGAGACATACCGATTT
Found at i:17783717 original size:25 final size:25
Alignment explanation
Indices: 17783642--17783721 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
17783632 CTCATGAGAA
17783642 CATACCGATTTATAGCTCGT-GAGAG
1 CATACCGATTTATAGCTCGTAG-GAG
* * ** *
17783667 CATATCGATCTATAGCTCAAATGAG
1 CATACCGATTTATAGCTCGTAGGAG
*
17783692 CATACCGATTTACAGCTCGTAGGAG
1 CATACCGATTTATAGCTCGTAGGAG
17783717 CATAC
1 CATAC
17783722 ATGTACACGA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (25 bp):
CATACCGATTTATAGCTCGTAGGAG
Found at i:17784255 original size:22 final size:22
Alignment explanation
Indices: 17784227--17784272 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
17784217 TTTATTTTTG
*
17784227 TTATAATGGCATGTATAGGTAT
1 TTATAATGGAATGTATAGGTAT
17784249 TTATAATGGAATGTATAGGTAT
1 TTATAATGGAATGTATAGGTAT
17784271 TT
1 TT
17784273 TGGCTAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (22 bp):
TTATAATGGAATGTATAGGTAT
Found at i:17784853 original size:37 final size:37
Alignment explanation
Indices: 17784803--17784878 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
17784793 GGGTAAGAAA
17784803 AATGTCTTGTAAAATGGCCTATGTTCAAGTACATGAC
1 AATGTCTTGTAAAATGGCCTATGTTCAAGTACATGAC
17784840 AATGTCTTGTAAAATGGCCTATGTTCAAGTACATGAC
1 AATGTCTTGTAAAATGGCCTATGTTCAAGTACATGAC
17784877 AA
1 AA
17784879 ATTGGGTAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (37 bp):
AATGTCTTGTAAAATGGCCTATGTTCAAGTACATGAC
Found at i:17786255 original size:16 final size:17
Alignment explanation
Indices: 17786234--17786268 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17786224 AATTTGGATA
17786234 AGAAAATT-ATTTAATT
1 AGAAAATTAATTTAATT
*
17786250 AGAAAATTAATTTAGTT
1 AGAAAATTAATTTAATT
17786267 AG
1 AG
17786269 TTTAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (17 bp):
AGAAAATTAATTTAATT
Found at i:17789340 original size:42 final size:42
Alignment explanation
Indices: 17789281--17789391 Score: 152
Period size: 42 Copynumber: 2.6 Consensus size: 42
17789271 CTCGGCCAAA
*
17789281 ACACATACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
1 ACACACACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
* * * *
17789323 ACACACACCCTTGTTCTAGGCCGTGGGGTACACATGGTTGAG
1 ACACACACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
*
17789365 ACACACACCCGTGTCTCTA-CCCGTGTG
1 ACACACACCCGTGT-TCTAGGCCGTGTG
17789392 CCCAATTCTG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 56 0.93
43 4 0.07
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.23
Consensus pattern (42 bp):
ACACACACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
Found at i:17796063 original size:27 final size:27
Alignment explanation
Indices: 17796005--17796180 Score: 162
Period size: 27 Copynumber: 6.5 Consensus size: 27
17795995 AAATTGTACA
*
17796005 GCACTAAGTGTGCG-ATTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
* *
17796031 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
* **
17796058 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGAT
*
17796085 GCACTAAGTGTGCGAGTTTGACTATG-T
1 GCACTAAGTGTGCGA-ATTGACTATGAT
* * * *
17796112 AGCACTAAGTGTGTGATTTGATTACG-T
1 -GCACTAAGTGTGCGAATTGACTATGAT
* *
17796139 AGCACTAAGTGTGCGAGTTGATTAT-AT
1 -GCACTAAGTGTGCGAATTGACTATGAT
*
17796166 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
17796181 GACTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 14 0.11
27 92 0.72
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:17796117 original size:82 final size:80
Alignment explanation
Indices: 17796005--17796159 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
17795995 AAATTGTACA
* *
17796005 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
17796069 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
* ** *
17796085 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGTGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
17796150 TGCGAGTTGA
64 TGCGAATTGA
17796160 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:17796144 original size:55 final size:53
Alignment explanation
Indices: 17796004--17796180 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 53
17795994 TAAATTGTAC
* **
17796004 AGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
* ** *
17796056 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAG-TTGAATATGT
* * * * *
17796112 AGCACTAAGTGTGTGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
*
17796166 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
17796181 GACTCAATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
53 14 0.13
54 46 0.44
55 42 0.40
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:17796171 original size:82 final size:80
Alignment explanation
Indices: 17796001--17796180 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 80
17795991 GATTAAATTG
* *
17796001 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
17796066 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * * ** *
17796081 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGTGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
17796145 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
17796163 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
17796181 GACTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 17 0.21
81 1 0.01
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:17800750 original size:79 final size:79
Alignment explanation
Indices: 17800610--17800770 Score: 234
Period size: 79 Copynumber: 2.0 Consensus size: 79
17800600 CAAGTTAGAT
* * * * *
17800610 TTTTCCTCCCGATTTTCAATATTTTTAGTTGGCTTTGAAATTTTTCAGGAGGAGAAGGAAATCAA
1 TTTTCCTCCCGATTTTCAATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCAA
* *
17800675 GAGGAAAAATCTGA
66 GAGAAAAAATCTAA
*
17800689 TTTTCCTCCTGAGTTTT-AATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCA
1 TTTTCCTCCCGA-TTTTCAATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCA
17800753 AGAGAAAAAATCTAA
65 AGAGAAAAAATCTAA
17800768 TTT
1 TTT
17800771 GTCATTCTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 69 0.95
80 4 0.05
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (79 bp):
TTTTCCTCCCGATTTTCAATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCAA
GAGAAAAAATCTAA
Found at i:17801405 original size:14 final size:15
Alignment explanation
Indices: 17801381--17801409 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
17801371 AGAACTGGAA
17801381 AAATAAAATAAAATT
1 AAATAAAATAAAATT
17801396 AAAT-AAATAAAATT
1 AAATAAAATAAAATT
17801410 TGAGGGCGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATAAAATAAAATT
Found at i:17803457 original size:3 final size:3
Alignment explanation
Indices: 17803451--17803477 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
17803441 AAAAAAGATG
17803451 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
17803478 GACTAGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:17805000 original size:97 final size:96
Alignment explanation
Indices: 17804899--17805079 Score: 236
Period size: 97 Copynumber: 1.9 Consensus size: 96
17804889 TTGTAATTTC
* * * * *
17804899 TAGCTTTAATCTATTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTTAGTCTGCTCCTAC
1 TAGCTTCAATCTACTCCACTACAACTTCAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCT-C
17804964 TACAACTTCAAGGAGATAAGACTCGCAACTTT
65 TACAACTTCAAGGAGATAAGACTCGCAACTTT
* * ** *
17804996 TAGCTTCAATTTGCTCCACTGTAACTTTAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCT
1 TAGCTTCAATCTACTCCACTACAACTTCAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCT
** *
17805061 GTAACTTCAGGGAGATAAG
66 ACAACTTCAAGGAGATAAG
17805080 GCTGGTGGCT
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
96 18 0.25
97 53 0.75
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (96 bp):
TAGCTTCAATCTACTCCACTACAACTTCAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCT
ACAACTTCAAGGAGATAAGACTCGCAACTTT
Found at i:17805121 original size:44 final size:45
Alignment explanation
Indices: 17804996--17805124 Score: 136
Period size: 44 Copynumber: 2.9 Consensus size: 45
17804986 TCGCAACTTT
* *
17804996 TAGCTTCAATTTGCTCCACTGTAACTTTAGGGAA-ATAAGATCTGA
1 TAGCTTCAATCTGCTCCACTGTAACTTTA-GGAAGATAAGAGCTGA
* * * * * * *
17805041 TATCTTTAGTCTGCTCCTCTGTAACTTCAGGGAGATAAG-GCTGG
1 TAGCTTCAATCTGCTCCACTGTAACTTTAGGAAGATAAGAGCTGA
* *
17805085 TGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGA
1 TAGCTTCAATCTGCTCCACTGTAACTTTAGGAAGATAAGA
17805125 TCTACCATAA
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
44 37 0.57
45 28 0.43
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (45 bp):
TAGCTTCAATCTGCTCCACTGTAACTTTAGGAAGATAAGAGCTGA
Found at i:17805409 original size:44 final size:45
Alignment explanation
Indices: 17805193--17805696 Score: 157
Period size: 44 Copynumber: 10.7 Consensus size: 45
17805183 CTATTTTTAG
* * * * *
17805193 TCTGCTCCGCTGCAAATTTAGGGAGATAAG-GCTGGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGAGTTGGTGGCTTCAA
* * * * * *
17805237 TCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAATTTGTAGCTTTAA
1 TCTGCTCCACTGCAACTTC-AG--G--AAGAT--A--AGAGTTGGTGGCTTCAA
* * ** *
17805291 TCTGTTCCACTGCAACGTCAGGGAA-ATAAGA-TTCACTGTCTTCAA
1 TCTGCTCCACTGCAACTTCA-GGAAGATAAGAGTT-GGTGGCTTCAA
* * *
17805336 TCTGCTTCGCTGCAACTTTA-GAGAGATAAG-GTTGGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGA-AGATAAGAGTTGGTGGCTTCAA
* * * *
17805380 TCTGCTCCACTACAACTTCAGGAATATAAGATCTGTCATAATTTGTAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA---G------TTGGTGGCTTCAA
* * * * * *
17805434 TCTGTTCCACTGTAACTTTAGGGAA-ATAAGATTTGCTGTCTTCAA
1 TCTGCTCCACTGCAACTTCA-GGAAGATAAGAGTTGGTGGCTTCAA
* * * *
17805479 TCTGCTCCACTGCAATTTCAGGGAGATAAGA-CTGGTGACTTCAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGAGTTGGTGGCTTCAA
* * * * * *
17805523 TCTGCTCCAATACAACTTCAGGAAGATAGGATCCGCCATAAATTGTAGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA---G---T---TGGTGGCTTCAA
* * * ** * *
17805577 TCTGTTCCACTACAACGTCAGGTAA-ATAAGA-TTCACTGTCTTCAG
1 TCTGCTCCACTGCAACTTCAGG-AAGATAAGAGTT-GGTGGCTTCAA
* * * *
17805622 TCTGCTCTA-TAGTAACTTCAGGGAGATAAG-GCTGGTGGCTTCAA
1 TCTGCTCCACT-GCAACTTCAGGAAGATAAGAGTTGGTGGCTTCAA
* *
17805666 TCTGCTCCATTGCAACTTTAGGAAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA
17805697 TCTACCATAA
Statistics
Matches: 328, Mismatches: 87, Indels: 89
0.65 0.17 0.18
Matches are distributed among these distances:
43 2 0.01
44 121 0.37
45 92 0.28
47 3 0.01
48 1 0.00
49 6 0.02
50 2 0.01
51 1 0.00
52 1 0.00
53 2 0.01
54 91 0.28
55 6 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGAAGATAAGAGTTGGTGGCTTCAA
Found at i:17805488 original size:45 final size:44
Alignment explanation
Indices: 17805428--17805531 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 44
17805418 TAATTTGTAG
* * * *
17805428 CTTCAATCTGTTCCACTGTAACTTT-AGGGAAATAAGATTTGCTGT
1 CTTCAATCTGCTCCACTGCAA-TTTCAGGGAAATAAGA-CTGCTGA
* *
17805473 CTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTGGTGA
1 CTTCAATCTGCTCCACTGCAATTTCAGGGAAATAAGACTGCTGA
17805517 CTTCAATCTGCTCCA
1 CTTCAATCTGCTCCA
17805532 ATACAACTTC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 22 0.42
45 30 0.58
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAATTTCAGGGAAATAAGACTGCTGA
Found at i:17805500 original size:99 final size:98
Alignment explanation
Indices: 17805330--17805509 Score: 236
Period size: 99 Copynumber: 1.8 Consensus size: 98
17805320 GATTCACTGT
* * *
17805330 CTTCAATCTGCTTCGCTGCAACTTTAGAGAGATAAGGTTGGTGGCTTCAATCTGCTCCACTACAA
1 CTTCAATCTGCTTCACTGCAACTTTAGAGAAATAAGGTTGCTGGCTTCAATCTGCTCCACTACAA
*
17805395 CTTCAGGAATATAAGATCTGTCATAATTTGTAG
66 CTTCAGGAAGATAAGATCTGTCATAATTTGTAG
* * * * *
17805428 CTTCAATCTG-TTCCACTGTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGC
1 CTTCAATCTGCTT-CACTGCAACTTTAGAGAAATAAG-GTTGCTGGCTTCAATCTGCTCCACTAC
* *
17805492 AATTTCAGGGAGATAAGA
64 AACTTCAGGAAGATAAGA
17805510 CTGGTGACTT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
97 2 0.03
98 29 0.42
99 38 0.55
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (98 bp):
CTTCAATCTGCTTCACTGCAACTTTAGAGAAATAAGGTTGCTGGCTTCAATCTGCTCCACTACAA
CTTCAGGAAGATAAGATCTGTCATAATTTGTAG
Found at i:17805795 original size:429 final size:427
Alignment explanation
Indices: 17804953--17805795 Score: 1174
Period size: 429 Copynumber: 2.0 Consensus size: 427
17804943 CTATCTTTAG
* *
17804953 TCTGCTCCTACTACAACTTCAAGGAGATAAGACTCGCAACTTTTAGCTTCAATTTGCTCCACTGT
1 TCTGCTCCTACTACAACTTCAAGGAGATAAGACTCGCAAATTTTAGCTTCAATCTGCTCCACTGT
* * * * *
17805018 AACTTTAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCTGTAACTTCAGGGAGATAAGGCT
66 AACTTTAGGGAAATAAGATCTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT
* * * * * *
17805083 GGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTTAA
131 GGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCACCATAAATTGTAGCTTTAA
* * * * * *
17805148 TCTATTCCACTACAATGTCAAGGAAATAAGATTCGCTATTTTTAGTCTGCTCCGCTGCAAATTTA
196 TCTATTCCACTACAACGTCAAGGAAATAAGATTCACTATCTTCAGTCTGCTCCGATGCAAATTCA
17805213 GGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAA
261 GGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAA
* * * *
17805278 TTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTCACTGTCTTCAATCTGCTT
326 TTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCACTGTCTTCAATCTACTC
* *
17805343 CGCTGCAACTTTAGAGAGATAAGGTTGGTGGCTTCAA
391 CGCTACAACTTCAGAGAGATAAGGTTGGTGGCTTCAA
* *
17805380 TCTGCTCC-ACTACAACTTC-AGGAATATAAGA-TCTGTCATAATTTGTAGCTTCAATCTGTTCC
1 TCTGCTCCTACTACAACTTCAAGG-AGATAAGACTC-G-CA-AATTT-TAGCTTCAATCTGCTCC
* * * *
17805442 ACTGTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGCAATTTCAGGGAGATA
61 ACTGTAACTTTAGGGAAATAAGATCTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *
17805507 AGACTGGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAGGATCCGCCATAAATTGTAGC
126 AGACTGGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCACCATAAATTGTAGC
* * * *
17805572 TTTAATCTGTTCCACTACAACGTC-AGGTAAATAAGATTCACTGTCTTCAGTCTGCT-CTATAGT
191 TTTAATCTATTCCACTACAACGTCAAGG-AAATAAGATTCACTATCTTCAGTCTGCTCCGAT-GC
* * * * *
17805635 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCATTGCAACTTTAGGAAGATAAGATCT
254 AAATTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATGCAACTTCAAGAAGATAAGATCC
* ** *
17805700 ACCATAATTTGTAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTGTCTTCAG
319 ACCATAATTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCACTGTCTTCAA
17805765 TCTACTCCGCTACAACTTCAGAGAGATAAGG
384 TCTACTCCGCTACAACTTCAGAGAGATAAGG
17805796 CTTATGACTT
Statistics
Matches: 363, Mismatches: 46, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
425 5 0.01
426 19 0.05
427 10 0.03
428 9 0.02
429 320 0.88
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (427 bp):
TCTGCTCCTACTACAACTTCAAGGAGATAAGACTCGCAAATTTTAGCTTCAATCTGCTCCACTGT
AACTTTAGGGAAATAAGATCTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT
GGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCACCATAAATTGTAGCTTTAA
TCTATTCCACTACAACGTCAAGGAAATAAGATTCACTATCTTCAGTCTGCTCCGATGCAAATTCA
GGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAA
TTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCACTGTCTTCAATCTACTC
CGCTACAACTTCAGAGAGATAAGGTTGGTGGCTTCAA
Found at i:17805829 original size:286 final size:285
Alignment explanation
Indices: 17805024--17805797 Score: 1102
Period size: 286 Copynumber: 2.7 Consensus size: 285
17805014 CTGTAACTTT
* * *
17805024 AGGGAAATAAGATCTGA-TATCTTTAGTCTGCTCCTCTGTAACTTCAGGGAGATAAGGCTGGTGG
1 AGGGAAATAAGAT-TCACTGTCTTCAGTCTGCT-CTCTGTAACTTCAGGGAGATAAGGCTGGTGG
* *
17805088 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTTAATCTAT
64 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGT
* * * * * *
17805153 TCCACTACAA-TGTCAAGGAAATAAGATTCGCTATTTTTAGTCTGCTCCGCTGCAAATTTAGGGA
129 TCCACTACAACT-TCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCGCTGCAAATTCAGGGA
* * *
17805217 GATAAGGCTGGTGGCTTCAATCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAATTTG
193 GATAAGGCTGGTGACTTCAATCTGCTCCAATGCAACTTCAGGAAGATAAGATCCACCATAAATTG
*
17805282 TAGCTTTAATCTGTTCCACTGCAACGTC
258 TAGCTTTAATCTGTTCCACTACAACGTC
* * * * * *
17805310 AGGGAAATAAGATTCACTGTCTTCAATCTGCTTCGCTGCAACTTTAGAGAGATAAGGTTGGTGGC
1 AGGGAAATAAGATTCACTGTCTTCAGTCTGC-TCTCTGTAACTTCAGGGAGATAAGGCTGGTGGC
* * * **
17805375 TTCAATCTGCTCCACTACAACTTCAGGAATATAAGATCTGTCATAATTTGTAGCTTCAATCTGTT
65 TTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTT
** * * * *
17805440 CCACTGTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGCAATTTCAGGGAGA
130 CCACTACAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCGCTGCAAATTCAGGGAGA
* * * *
17805505 TAAGACTGGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAGGATCCGCCATAAATTGTA
195 TAAGGCTGGTGACTTCAATCTGCTCCAATGCAACTTCAGGAAGATAAGATCCACCATAAATTGTA
17805570 GCTTTAATCTGTTCCACTACAACGTC
260 GCTTTAATCTGTTCCACTACAACGTC
* *
17805596 AGGTAAATAAGATTCACTGTCTTCAGTCTGCTCTATAGTAACTTCAGGGAGATAAGGCTGGTGGC
1 AGGGAAATAAGATTCACTGTCTTCAGTCTGCTCTCT-GTAACTTCAGGGAGATAAGGCTGGTGGC
*
17805661 TTCAATCTGCTCCATTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTT
65 TTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTT
* * * *
17805726 CCACTACAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTACTCCGCTACAACTTCAGAGAGA
130 CCACTACAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCGCTGCAAATTCAGGGAGA
17805791 TAAGGCT
195 TAAGGCT
17805798 TATGACTTTG
Statistics
Matches: 424, Mismatches: 60, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
285 5 0.01
286 417 0.98
287 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (285 bp):
AGGGAAATAAGATTCACTGTCTTCAGTCTGCTCTCTGTAACTTCAGGGAGATAAGGCTGGTGGCT
TCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTC
CACTACAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCGCTGCAAATTCAGGGAGAT
AAGGCTGGTGACTTCAATCTGCTCCAATGCAACTTCAGGAAGATAAGATCCACCATAAATTGTAG
CTTTAATCTGTTCCACTACAACGTC
Found at i:17805840 original size:143 final size:143
Alignment explanation
Indices: 17804953--17805797 Score: 995
Period size: 143 Copynumber: 5.9 Consensus size: 143
17804943 CTATCTTTAG
* * * *
17804953 TCTGCTCCTACTACAACTTCAAGG-AGATAAGA-CT-CGCA-ACTTT-TAGCTTCAATTTGCTCC
1 TCTGCTCC-ACTGCAACTTC-AGGAAGATAAGATCTAC-CATAATTTGTAGCTTCAATCTGTTCC
** * * * * * *
17805013 ACTGTAACTTTAGGGAAATAAGA-TCTGATATCTTTAGTCTGCTCCTCTGTAACTTCAGGGAGAT
63 ACTACAACTTCAGGGAAATAAGATTC-GCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGAT
17805077 AAGGCTGGTGGCTTCAA
127 AAGGCTGGTGGCTTCAA
* * *
17805094 TCTGCTCCACTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTTAATCTATTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * * * *
17805159 ACAA-TGTCAAGGAAATAAGATTCGCTATTTTTAGTCTGCTCCGCTGCAAATTTAGGGAGATAAG
66 ACAACT-TCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
17805223 GCTGGTGGCTTCAA
130 GCTGGTGGCTTCAA
* * * *
17805237 TCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * * * * *
17805302 GCAACGTCAGGGAAATAAGATTCACTGTCTTCAATCTGCTTCGCTGCAACTTTAGAGAGATAAGG
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
*
17805367 TTGGTGGCTTCAA
131 CTGGTGGCTTCAA
* * **
17805380 TCTGCTCCACTACAACTTCAGGAATATAAGATCTGTCATAATTTGTAGCTTCAATCTGTTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
** * * * * * *
17805445 GTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGA
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
*
17805510 CTGGTGACTTCAA
131 CTGGTGGCTTCAA
* * * ** * *
17805523 TCTGCTCCAATACAACTTCAGGAAGATAGGATCCGCCATAAATTGTAGCTTTAATCTGTTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * ** *
17805588 ACAACGTCAGGTAAATAAGATTCACTGTCTTCAGTCTGCT-CTATAGTAACTTCAGGGAGATAAG
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCT-GCAACTTCAGGGAGATAAG
17805652 GCTGGTGGCTTCAA
130 GCTGGTGGCTTCAA
* *
17805666 TCTGCTCCATTGCAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * *
17805731 ACAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGG
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
17805796 CT
131 CT
17805798 TATGACTTTG
Statistics
Matches: 600, Mismatches: 94, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
139 3 0.00
140 17 0.03
141 12 0.02
142 8 0.01
143 556 0.93
144 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (143 bp):
TCTGCTCCACTGCAACTTCAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
CTGGTGGCTTCAA
Found at i:17806407 original size:65 final size:65
Alignment explanation
Indices: 17806303--17806426 Score: 178
Period size: 65 Copynumber: 1.9 Consensus size: 65
17806293 AATGATGGAC
* * *
17806303 AAGAAGGAAATTGACTGAGAGCATAGCTCAAGACAAATAAGTTAATCAAAGATGGCAAATGCAAT
1 AAGAAAGAAATTGACTGAGAGCATAGCTCAAGACAAATAAATTAATCAAAGATAGCAAATGCAAT
* **
17806368 AAGAAAGAAATTGATTGAGAGCATAGCTCGAA-ATGAATAAATTAATCAAAGATAGCAAA
1 AAGAAAGAAATTGACTGAGAGCATAGCTC-AAGACAAATAAATTAATCAAAGATAGCAAA
17806427 CTTTGCTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 50 0.96
66 2 0.04
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.19
Consensus pattern (65 bp):
AAGAAAGAAATTGACTGAGAGCATAGCTCAAGACAAATAAATTAATCAAAGATAGCAAATGCAAT
Found at i:17809752 original size:52 final size:53
Alignment explanation
Indices: 17809679--17809871 Score: 155
Period size: 47 Copynumber: 3.9 Consensus size: 53
17809669 CCATGGCAAC
* * *
17809679 ATGTGATATGTGATTTTCGTATAAGACCATAGCT-GGCTATGGCATCGTAGAG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
*
17809731 ATGTGATTATGTG-CTTCCGTATAAGACCATATCTGGGATATGGCATC---G-G
1 ATGTGA-TATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
* * ** *
17809780 -TGTGATATATG-CTACTATATAAGACCATATCTGGGATATGGCATC----AG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
* * * *
17809827 -TGAGATATGTGA-TT-CATGTAAGACCATAGCTGGGCTATGGCATCG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCG
17809872 ATATATGAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
46 26 0.21
47 47 0.39
48 5 0.04
49 1 0.01
50 1 0.01
52 24 0.20
53 17 0.14
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
Found at i:17809803 original size:47 final size:46
Alignment explanation
Indices: 17809750--17809871 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 46
17809740 TGTGCTTCCG
* *
17809750 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATAC-A
* * *
17809797 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACA
* * *
17809843 TGTAAGACCATAGCTGGGCTATGGCATCG
1 TATAAGACCATATCTGGGATATGGCATCG
17809872 ATATATGAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACA
Found at i:17809900 original size:42 final size:43
Alignment explanation
Indices: 17809843--17809956 Score: 169
Period size: 42 Copynumber: 2.7 Consensus size: 43
17809833 ATGTGATTCA
*
17809843 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
*
17809885 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
* **
17809927 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
17809957 GAAAATGAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
Found at i:17813793 original size:40 final size:40
Alignment explanation
Indices: 17813734--17813985 Score: 330
Period size: 40 Copynumber: 6.3 Consensus size: 40
17813724 CATTTGAATG
* *
17813734 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
17813774 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
17813814 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
17813854 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
17813894 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
17813934 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
17813974 ATATCC-GGCTAA
1 ATATCCGGGCTAA
17813986 ATTCCGAAGA
Statistics
Matches: 194, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 7 0.04
40 184 0.95
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:17818585 original size:131 final size:131
Alignment explanation
Indices: 17818349--17818588 Score: 290
Period size: 131 Copynumber: 1.8 Consensus size: 131
17818339 CACGTGTTTT
* *
17818349 AATTTAGAAGAATATTCGGTTATTTAGATCCAACGAGAAAAATTGAAACCCTATAAGTTAGGGCA
1 AATTTAAAAGAATATTCGGCTATTTAGATCCAACGAGAAAAATTGAAACCCTATAAGTTAGGGCA
* * * * *
17818414 TGACTTCCTCGAGTTTCTAAATACAGAATATTGCCTTTATTTTTATTTAAAATTCATGTATTTTA
66 TCAATTCCTCGAGTTCCAAAATACAGAACATTGCCTTTATTTTTATTTAAAATTCATGTATTTTA
17818479 A
131 A
* * * * * *
17818480 AATTTAAAAGAATATTTGGCTATTTAGGTTCGACGAGAAAAATTGAAACCCTGTAAGTTAGGGTA
1 AATTTAAAAGAATATTCGGCTATTTAGATCCAACGAGAAAAATTGAAACCCTATAAGTTAGGGCA
*
17818545 -CAATTCTCTCGTA-TTACCAAAATTC-GAAACATTGCC-TTATTTTT
66 TCAATTC-CTCG-AGTT-CCAAAATACAG-AACATTGCCTTTATTTTT
17818589 GAAAATTTTA
Statistics
Matches: 91, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
130 4 0.04
131 72 0.79
132 15 0.16
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (131 bp):
AATTTAAAAGAATATTCGGCTATTTAGATCCAACGAGAAAAATTGAAACCCTATAAGTTAGGGCA
TCAATTCCTCGAGTTCCAAAATACAGAACATTGCCTTTATTTTTATTTAAAATTCATGTATTTTA
A
Found at i:17818943 original size:32 final size:31
Alignment explanation
Indices: 17818879--17818943 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 31
17818869 AACAAGAGTA
* *
17818879 ATAAAAAATAATAAAATAACATATAAAGGAG
1 ATAAAAAAAAATAAAATAACATAAAAAGGAG
*
17818910 ATAAAATAAAAATAAAATAA-AGTAAAAATGAG
1 ATAAAA-AAAAATAAAATAACA-TAAAAAGGAG
17818942 AT
1 AT
17818944 GACAATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 7 0.24
32 22 0.76
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (31 bp):
ATAAAAAAAAATAAAATAACATAAAAAGGAG
Found at i:17819220 original size:15 final size:15
Alignment explanation
Indices: 17819197--17819230 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
17819187 TTTTTAAATG
17819197 ATAACAATAATAGTA
1 ATAACAATAATAGTA
*
17819212 ATAATAATAATAGTA
1 ATAACAATAATAGTA
17819227 ATAA
1 ATAA
17819231 AAGACTAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAACAATAATAGTA
Found at i:17820384 original size:20 final size:18
Alignment explanation
Indices: 17820348--17820398 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
17820338 AAGGGCTATT
*
17820348 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTGAAATAA
17820367 GTTGTAAATATGTGAAATAA
1 -TTGTAAAT-TGTGAAATAA
17820387 TTG-AAATTGTGA
1 TTGTAAATTGTGA
17820399 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGTAAATTGTGAAATAA
Found at i:17821173 original size:43 final size:44
Alignment explanation
Indices: 17821117--17821202 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 44
17821107 TATATATGAG
* * * *
17821117 GCATCTGAGCTCGTTGAGTTGAT-CAACTTCATTATGGATGCGA
1 GCATCCGAACTCGTTGAATTGATCCAACTTCATAATGGATGCGA
* *
17821160 GCATCCGAACTCGTTGAATTTATCCAAGTTCATAATGGATGCG
1 GCATCCGAACTCGTTGAATTGATCCAACTTCATAATGGATGCG
17821203 TTACATGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 19 0.53
44 17 0.47
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (44 bp):
GCATCCGAACTCGTTGAATTGATCCAACTTCATAATGGATGCGA
Found at i:17823241 original size:19 final size:22
Alignment explanation
Indices: 17823217--17823269 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
17823207 CGGCTTGAGG
17823217 ACACGGGCGTGTCC-TG-G-GC
1 ACACGGGCGTGTCCTTGTGCGC
* *
17823236 ACACGGGTGTGTCCTTGTGCTC
1 ACACGGGCGTGTCCTTGTGCGC
17823258 ACACGGGCGTGT
1 ACACGGGCGTGT
17823270 GTCCCTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 13 0.46
20 2 0.07
21 1 0.04
22 12 0.43
ACGTcount: A:0.11, C:0.28, G:0.38, T:0.23
Consensus pattern (22 bp):
ACACGGGCGTGTCCTTGTGCGC
Found at i:17824943 original size:14 final size:14
Alignment explanation
Indices: 17824932--17824961 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
17824922 GTAAAATATT
17824932 TTTC-GGAAAATAA
1 TTTCTGGAAAATAA
17824945 TTTCTGGAAAATAA
1 TTTCTGGAAAATAA
17824959 TTT
1 TTT
17824962 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATAA
Found at i:17824980 original size:19 final size:20
Alignment explanation
Indices: 17824945--17824988 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
17824935 CGGAAAATAA
17824945 TTTCTGGAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
*
17824965 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATAATTTACT
17824984 TTTCT
1 TTTCT
17824989 AGTGTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:17827852 original size:15 final size:15
Alignment explanation
Indices: 17827807--17827852 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
17827797 GCCAATTCAA
17827807 GGAGTTGAGGATTAT
1 GGAGTTGAGGATTAT
*
17827822 GGA--AGAGGATCT-T
1 GGAGTTGAGGAT-TAT
17827835 GGAGTTGAGGATTAT
1 GGAGTTGAGGATTAT
17827850 GGA
1 GGA
17827853 AGACAAGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 13 0.52
ACGTcount: A:0.28, C:0.02, G:0.41, T:0.28
Consensus pattern (15 bp):
GGAGTTGAGGATTAT
Found at i:17834124 original size:33 final size:33
Alignment explanation
Indices: 17834087--17834156 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
17834077 TATTTATACA
17834087 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
17834120 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
17834153 ATTA
1 ATTA
17834157 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:17834409 original size:6 final size:6
Alignment explanation
Indices: 17834395--17834439 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
17834385 GAAAACAGGG
* **
17834395 AAGAAA AAGAGA AAGAAA AAGGGA AAGAAA AAGAAA AAGGAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AA-GAAA AA
17834440 CTAGAGATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:17834410 original size:12 final size:12
Alignment explanation
Indices: 17834395--17834439 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
17834385 GAAAACAGGG
17834395 AAGAAAAAGAGA
1 AAGAAAAAGAGA
*
17834407 AAGAAAAAGGGA
1 AAGAAAAAGAGA
*
17834419 AAGAAAAAGAAA
1 AAGAAAAAGAGA
17834431 AAGGAAAAA
1 AA-GAAAAA
17834440 CTAGAGATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 23 0.79
13 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAAAAGAGA
Found at i:17834412 original size:24 final size:25
Alignment explanation
Indices: 17834385--17834439 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 25
17834375 AGAAGCATTC
*
17834385 GAAAACAGGG-AAGAAAAAGAGAAA-
1 GAAAA-AGGGAAAGAAAAAGAAAAAG
17834409 GAAAAAGGGAAAGAAAAAGAAAAAG
1 GAAAAAGGGAAAGAAAAAGAAAAAG
17834434 GAAAAA
1 GAAAAA
17834440 CTAGAGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 4 0.14
24 18 0.64
25 6 0.21
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (25 bp):
GAAAAAGGGAAAGAAAAAGAAAAAG
Found at i:17834427 original size:18 final size:18
Alignment explanation
Indices: 17834400--17834434 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17834390 CAGGGAAGAA
*
17834400 AAAGAGAAAGAAAAAGGG
1 AAAGAAAAAGAAAAAGGG
17834418 AAAGAAAAAGAAAAAGG
1 AAAGAAAAAGAAAAAGG
17834435 AAAAACTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAGGG
Found at i:17835487 original size:45 final size:45
Alignment explanation
Indices: 17835422--17835522 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
17835412 ATGTGCCGAC
* *
17835422 TACCGTTACTATTACCGATTC-GACACTTTGTGTGTCGAAGACTGT
1 TACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAAGACTGT
* *
17835467 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAAGACTGT
17835512 TACCGTTACTG
1 TACCGTTACTG
17835523 CTACTGCTAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (45 bp):
TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAAGACTGT
Found at i:17835533 original size:18 final size:18
Alignment explanation
Indices: 17835506--17835540 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17835496 GTGTGTTGAA
*
17835506 TACTGTTACCGTTACTGC
1 TACTGCTACCGTTACTGC
17835524 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
17835541 ATTACTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:17841910 original size:33 final size:33
Alignment explanation
Indices: 17841873--17841942 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
17841863 TATTTATACA
17841873 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
17841906 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
17841939 ATTA
1 ATTA
17841943 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:17843268 original size:45 final size:45
Alignment explanation
Indices: 17843203--17843303 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
17843193 ATGTGCCGAC
* *
17843203 TACCGTTACTATTACCGATTC-GACACTTTGTGTGTCGAAGACTGT
1 TACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAAGACTGT
* *
17843248 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAAGACTGT
17843293 TACCGTTACTG
1 TACCGTTACTG
17843304 CTACTGCTAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (45 bp):
TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAAGACTGT
Found at i:17843314 original size:18 final size:18
Alignment explanation
Indices: 17843287--17843321 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17843277 GTGTGTTGAA
*
17843287 TACTGTTACCGTTACTGC
1 TACTGCTACCGTTACTGC
17843305 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
17843322 ATTACTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:17846542 original size:13 final size:13
Alignment explanation
Indices: 17846524--17846551 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17846514 CGTTCGGGTA
17846524 AATCCTTTTCTGC
1 AATCCTTTTCTGC
17846537 AATCCTTTTCTGC
1 AATCCTTTTCTGC
17846550 AA
1 AA
17846552 CACATGCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (13 bp):
AATCCTTTTCTGC
Found at i:17850459 original size:22 final size:21
Alignment explanation
Indices: 17850419--17850459 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
17850409 TTCTTAACAC
*
17850419 AGGGGCACACACCCGTGTGGG
1 AGGGGCACACACCCATGTGGG
*
17850440 AGGGGCAACACGCCCATGTG
1 AGGGGC-ACACACCCATGTG
17850460 ACATTTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (21 bp):
AGGGGCACACACCCATGTGGG
Found at i:17852173 original size:40 final size:40
Alignment explanation
Indices: 17852118--17852255 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
17852108 CGGATCACAA
17852118 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
17852158 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
17852198 CCGGGCTAGGTCCCGAAGGCAGTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
17852238 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
17852256 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.18
40 73 0.82
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:17863858 original size:24 final size:24
Alignment explanation
Indices: 17863828--17863930 Score: 89
Period size: 24 Copynumber: 4.2 Consensus size: 24
17863818 TCCTGATTAA
*
17863828 TGGCTCTCCCGAGCTTCCCAATAT
1 TGGCTCTCCGGAGCTTCCCAATAT
** * *
17863852 TGGCTCTCTTGAACTTCCCGATAT
1 TGGCTCTCCGGAGCTTCCCAATAT
* ** *
17863876 ATGGCTATCCGGAGCTTCCCGTTAA
1 -TGGCTCTCCGGAGCTTCCCAATAT
* * *
17863901 TGGCTCTACGGAGCTACCCATTAT
1 TGGCTCTCCGGAGCTTCCCAATAT
17863925 TGGCTC
1 TGGCTC
17863931 GCATGAGCTT
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
24 45 0.71
25 18 0.29
ACGTcount: A:0.17, C:0.31, G:0.20, T:0.31
Consensus pattern (24 bp):
TGGCTCTCCGGAGCTTCCCAATAT
Found at i:17863877 original size:26 final size:26
Alignment explanation
Indices: 17863800--17863881 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 26
17863790 CTTCCCGTTG
*
17863800 ATTGGCTCT-TTGTAAGCTTCCTGAT-T
1 ATTGGCTCTCTTG-AA-CTTCCCGATAT
* ** *
17863826 AATGGCTCTCCCGAGCTTCCC-A-AT
1 ATTGGCTCTCTTGAACTTCCCGATAT
17863850 ATTGGCTCTCTTGAACTTCCCGATAT
1 ATTGGCTCTCTTGAACTTCCCGATAT
17863876 A-TGGCT
1 ATTGGCT
17863882 ATCCGGAGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
24 19 0.44
25 11 0.26
26 12 0.28
27 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (26 bp):
ATTGGCTCTCTTGAACTTCCCGATAT
Found at i:17863893 original size:25 final size:25
Alignment explanation
Indices: 17863814--17863915 Score: 93
Period size: 24 Copynumber: 4.2 Consensus size: 25
17863804 GCTCTTTGTA
* *
17863814 AGCTTCCTGAT-TAATGGCTCTCCCG
1 AGCTTCCCGATAT-ATGGCTCTCCGG
* **
17863839 AGCTTCCCAATAT-TGGCTCTCTTG
1 AGCTTCCCGATATATGGCTCTCCGG
* *
17863863 AACTTCCCGATATATGGCTATCCGG
1 AGCTTCCCGATATATGGCTCTCCGG
* *
17863888 AGCTTCCCGTTA-ATGGCTCTACGG
1 AGCTTCCCGATATATGGCTCTCCGG
17863912 AGCT
1 AGCT
17863916 ACCCATTATT
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
24 34 0.55
25 27 0.44
26 1 0.02
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (25 bp):
AGCTTCCCGATATATGGCTCTCCGG
Found at i:17863905 original size:49 final size:50
Alignment explanation
Indices: 17863771--17863907 Score: 145
Period size: 49 Copynumber: 2.7 Consensus size: 50
17863761 GAGCGTCTCC
* * *
17863771 ATATATGGCTTTTCGTGAGCTTCCCGTTGATTGGCTCTTTGTAAGCTTCCTG
1 ATATATGGCTATCCG-GAGCTTCCCGTT-ATTGGCTCTTTGTAAGCTTCCCG
* * **
17863823 AT-TAATGGCTCTCCCGAGCTTCCCAATATTGGCTCTCTTG-AA-CTTCCCG
1 ATAT-ATGGCTATCCGGAGCTTCCCGTTATTGGCTCT-TTGTAAGCTTCCCG
*
17863872 ATATATGGCTATCCGGAGCTTCCCGTTAATGGCTCT
1 ATATATGGCTATCCGGAGCTTCCCGTTATTGGCTCT
17863908 ACGGAGCTAC
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
49 35 0.49
50 12 0.17
51 14 0.20
52 10 0.14
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.36
Consensus pattern (50 bp):
ATATATGGCTATCCGGAGCTTCCCGTTATTGGCTCTTTGTAAGCTTCCCG
Found at i:17863938 original size:24 final size:24
Alignment explanation
Indices: 17863911--17864030 Score: 73
Period size: 25 Copynumber: 4.9 Consensus size: 24
17863901 TGGCTCTACG
*
17863911 GAGCTACCCATTATTGGCTCGCAT
1 GAGCTTCCCATTATTGGCTCGCAT
* **
17863935 GAGCTTCCTAATTA-TGGCTCTTAT
1 GAGCTTCC-CATTATTGGCTCGCAT
* *
17863959 GAGCTTCCCATTATATAG-TCCGGAT
1 GAGCTTCCCATTAT-TGGCT-CGCAT
* * * *
17863984 AAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCATTA-TTGGCTCGCAT
* *
17864009 GAACTTCCCGTTATATGGCTCG
1 GAGCTTCCCATTAT-TGGCTCG
17864031 AGAGAGTGCT
Statistics
Matches: 71, Mismatches: 18, Indels: 13
0.70 0.18 0.13
Matches are distributed among these distances:
23 4 0.06
24 24 0.34
25 42 0.59
26 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (24 bp):
GAGCTTCCCATTATTGGCTCGCAT
Found at i:17864336 original size:17 final size:17
Alignment explanation
Indices: 17864292--17864337 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
17864282 GAAATACATG
*
17864292 GAAATG-ATGGTAT-AT
1 GAAATGAATGATATAAT
*
17864307 GAAAT-ATTGATATAAT
1 GAAATGAATGATATAAT
17864323 GAAATGAATGATATA
1 GAAATGAATGATATA
17864338 TGTTTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.33
Consensus pattern (17 bp):
GAAATGAATGATATAAT
Found at i:17870017 original size:21 final size:22
Alignment explanation
Indices: 17869984--17870032 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
17869974 GCATTTTTTT
17869984 AAAAT-TAAATTAAA-A-ATAA
1 AAAATATAAATTAAATATATAA
*
17870003 AAAATATAATATTAAATATTTAA
1 AAAATATAA-ATTAAATATATAA
17870026 AAAATAT
1 AAAATAT
17870033 TTTTGACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 5 0.20
20 3 0.12
21 6 0.24
22 1 0.04
23 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATATAAATTAAATATATAA
Found at i:17870326 original size:24 final size:25
Alignment explanation
Indices: 17870299--17870348 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
17870289 TAATTATATG
17870299 TTTTAAAATTTTAATAAAAA-ATTA
1 TTTTAAAATTTTAATAAAAATATTA
* * *
17870323 TTTTTAATTTTTTATAAAAATATTA
1 TTTTAAAATTTTAATAAAAATATTA
17870348 T
1 T
17870349 ATATATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTTAAAATTTTAATAAAAATATTA
Found at i:17870335 original size:25 final size:27
Alignment explanation
Indices: 17870307--17870362 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 27
17870297 TGTTTTAAAA
* *
17870307 TTTTAATAAAAA-ATTAT-T-TTTAAT
1 TTTTTATAAAAATATTATATATATAAT
17870331 TTTTTATAAAAATATTATATATATAAT
1 TTTTTATAAAAATATTATATATATAAT
17870358 TTTTT
1 TTTTT
17870363 TTACATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 11 0.41
25 5 0.19
26 1 0.04
27 10 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTTATAAAAATATTATATATATAAT
Found at i:17870388 original size:38 final size:37
Alignment explanation
Indices: 17870318--17870389 Score: 90
Period size: 38 Copynumber: 1.9 Consensus size: 37
17870308 TTTAATAAAA
* *
17870318 AATTATTTTTAATTTTTTATAAAAATATTATATATAT
1 AATTATTTTTAATTTTTAATAAAAATAATATATATAT
* * *
17870355 AATTTTTTTTACATTTTTAATCAATATAATATATA
1 AATTATTTTTA-ATTTTTAATAAAAATAATATATA
17870390 ATTTTAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 10 0.34
38 19 0.66
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (37 bp):
AATTATTTTTAATTTTTAATAAAAATAATATATATAT
Found at i:17882050 original size:21 final size:21
Alignment explanation
Indices: 17882026--17882068 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
17882016 TCTCGAGGTA
*
17882026 GAGGTGAACGGCCTCATTGTG
1 GAGGTGAACGACCTCATTGTG
*
17882047 GAGGTGAACGACCTCGTTGTG
1 GAGGTGAACGACCTCATTGTG
17882068 G
1 G
17882069 TCTCCCCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.40, T:0.23
Consensus pattern (21 bp):
GAGGTGAACGACCTCATTGTG
Found at i:17882539 original size:16 final size:16
Alignment explanation
Indices: 17882515--17882553 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
17882505 ATAATTTTTT
*
17882515 TTAATTTTTTTTCAAC
1 TTAAATTTTTTTCAAC
17882531 TTAAA-TTTTTTCAAC
1 TTAAATTTTTTTCAAC
17882546 TTCAAATT
1 TT-AAATT
17882554 GTTGTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 12 0.60
16 7 0.35
17 1 0.05
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (16 bp):
TTAAATTTTTTTCAAC
Found at i:17882541 original size:15 final size:16
Alignment explanation
Indices: 17882521--17882553 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
17882511 TTTTTTAATT
17882521 TTTTTTCAACTT-AAA
1 TTTTTTCAACTTCAAA
17882536 TTTTTTCAACTTCAAA
1 TTTTTTCAACTTCAAA
17882552 TT
1 TT
17882554 GTTGTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTTTCAACTTCAAA
Found at i:17882591 original size:13 final size:12
Alignment explanation
Indices: 17882571--17882612 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
17882561 CTTTTTCGAA
17882571 TTTTTTTCACTT
1 TTTTTTTCACTT
*
17882583 TTGTTTTTCA-TA
1 TT-TTTTTCACTT
*
17882595 TTCTTTTCACTT
1 TTTTTTTCACTT
17882607 TTTTTT
1 TTTTTT
17882613 CTTTTTTCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 11 0.46
13 7 0.29
ACGTcount: A:0.10, C:0.14, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTTTTCACTT
Found at i:17889721 original size:15 final size:15
Alignment explanation
Indices: 17889701--17889730 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17889691 CATTTTATTT
*
17889701 ATATTAGGATAATTA
1 ATATTAAGATAATTA
17889716 ATATTAAGATAATTA
1 ATATTAAGATAATTA
17889731 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:17889774 original size:10 final size:10
Alignment explanation
Indices: 17889755--17889786 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
17889745 ATTTAGGATT
17889755 TTAT-TTTAA
1 TTATCTTTAA
17889764 TTATCTTTAA
1 TTATCTTTAA
17889774 TTATCTTTAA
1 TTATCTTTAA
17889784 TTA
1 TTA
17889787 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:17896081 original size:6 final size:6
Alignment explanation
Indices: 17896070--17896163 Score: 98
Period size: 6 Copynumber: 14.2 Consensus size: 6
17896060 GAGGCAACCA
17896070 ATTTTT ATTTTT ATTTTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT A--TTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
*
17896120 ATTTTAT TTATTTT ATCTTATT ATTTTATT ATTTATT ATTTTT A
1 ATTTT-T AT-TTTT AT-TT-TT A-TTT-TT ATTT-TT ATTTTT A
17896164 GATATTAATA
Statistics
Matches: 79, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
6 44 0.56
7 16 0.20
8 18 0.23
9 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:17896121 original size:38 final size:42
Alignment explanation
Indices: 17896071--17896163 Score: 133
Period size: 38 Copynumber: 2.3 Consensus size: 42
17896061 AGGCAACCAA
17896071 TTTTTATTTTTATTTT-TTTATTTTTAT-TT-TTA-TTT-TTA
1 TTTTTATTTTTATTTTATTTA-TTTTATCTTATTATTTTATTA
17896109 TTTTTATTTTTATTTTATTTATTTTATCTTATTATTTTATTA
1 TTTTTATTTTTATTTTATTTATTTTATCTTATTATTTTATTA
17896151 TTTATTATTTTTA
1 TTT-TTATTTTTA
17896164 GATATTAATA
Statistics
Matches: 49, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
38 22 0.45
39 6 0.12
40 3 0.06
41 3 0.06
42 6 0.12
43 9 0.18
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (42 bp):
TTTTTATTTTTATTTTATTTATTTTATCTTATTATTTTATTA
Found at i:17897097 original size:98 final size:99
Alignment explanation
Indices: 17896915--17897107 Score: 243
Period size: 97 Copynumber: 1.9 Consensus size: 99
17896905 TTAAGAATGC
* *
17896915 GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGTTGTCATCACTCTTCGCGTCAAAAGGTTCGAC
1 GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGTCATCACTCTTCGCGTCAAAAGGTTCAAC
* * *
17896980 ATGTTCTTAGGAAAAAT-AA-AAAATAAAAAGTAT
66 A-GTACATAGCAAAAATAAATAAAATAAAAAGTAT
* *
17897013 GTTGGGCTGAGTAACCGGGGTTTGGTGCTT-GGCTGTCATTACTCTTCGCGTCAAAGGGTTCAAC
1 GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGTCATCACTCTTCGCGTCAAAAGGTTCAAC
17897077 A-TACAT-GCACACATACATAAATAAAATAAAA
66 AGTACATAGCA-A-A-A-ATAAATAAAATAAAA
17897108 TAAAAAGTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
94 2 0.02
95 4 0.05
96 1 0.01
97 32 0.39
98 32 0.39
99 2 0.02
100 9 0.11
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (99 bp):
GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGTCATCACTCTTCGCGTCAAAAGGTTCAAC
AGTACATAGCAAAAATAAATAAAATAAAAAGTAT
Found at i:17897782 original size:20 final size:20
Alignment explanation
Indices: 17897754--17897801 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
17897744 AATTTAGGAT
*
17897754 TTTAT-TTTAATTATATCTA
1 TTTATCTTTAATTAAATCTA
*
17897773 TTTATCTTTAATTAAATGTA
1 TTTATCTTTAATTAAATCTA
17897793 TTTATCTTT
1 TTTATCTTT
17897802 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTATCTTTAATTAAATCTA
Found at i:17902394 original size:64 final size:64
Alignment explanation
Indices: 17902326--17902456 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
17902316 AATTACACTT
*
17902326 TTTTTTAGTGAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
1 TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
17902390 TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
1 TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
17902454 TTT
1 TTT
17902457 CCGAACTTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (64 bp):
TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
Found at i:17906523 original size:21 final size:21
Alignment explanation
Indices: 17906490--17906529 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17906480 AACTAAATAA
*
17906490 AAAACATTTGAAACATTGAGG
1 AAAACATTTGAAAAATTGAGG
17906511 AAAA-ATTTAGAAAAATTGA
1 AAAACATTT-GAAAAATTGA
17906530 ACTGCAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (21 bp):
AAAACATTTGAAAAATTGAGG
Found at i:17907494 original size:41 final size:41
Alignment explanation
Indices: 17907429--17907678 Score: 198
Period size: 41 Copynumber: 6.1 Consensus size: 41
17907419 ACTTTACTCG
* * ** *
17907429 ATTCAAGGTTACCAGAGTGTAAACAAGGGCACGTATGTGCT
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * * *
17907470 ATTCAAGAGTACCGAAGTACAAAC-AGAGGTACATTTGTGCA
1 ATTCAAGGGTACCAAAGTACAAACAAG-GGCACGTATGTGCA
* ** *
17907511 ATTC-AGGGTACCAAAGTACAAACAAAGGCATTTATATGCA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * *
17907551 ATTCATGGGTGCCAAAGTACAAACAAGGGCATGTATGTGAA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* ** * * * *
17907592 ATTCAGGGGTAATAAAGTACAAACGATGGCACATATGTGTA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * * * *
17907633 ATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATATGCA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
17907674 ATTCA
1 ATTCA
17907679 GGGAATGATT
Statistics
Matches: 161, Mismatches: 45, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
40 32 0.20
41 129 0.80
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (41 bp):
ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
Found at i:17910561 original size:34 final size:34
Alignment explanation
Indices: 17910521--17910753 Score: 153
Period size: 34 Copynumber: 6.9 Consensus size: 34
17910511 CAAATACATG
* *
17910521 TTAAGCAAGCTTATTGCTACTGTAATGATCTATT
1 TTAAGCATGATTATTGCTACTGTAATGATCTATT
*
17910555 TTAAGCATGATAATCT-CTA-TAGT-ATCGA-CTCATT
1 TTAAGCATGATTAT-TGCTACT-GTAAT-GATCT-ATT
* * *
17910589 ATAAGCATGATTATTGCTGCTTTAATGATCTATT
1 TTAAGCATGATTATTGCTACTGTAATGATCTATT
* *
17910623 TTAAGCATGATAATTGCTATTGT-ATCGA-CTCATT
1 TTAAGCATGATTATTGCTACTGTAAT-GATCT-ATT
* * * * *
17910657 ATAAGCATGTTTATTACTACTATAATGATCTTTT
1 TTAAGCATGATTATTGCTACTGTAATGATCTATT
* * * * *
17910691 TTAAGCATAATAATTGTTACAGT-ATCAAT-T-TT
1 TTAAGCATGATTATTGCTACTGTAAT-GATCTATT
*
17910723 TGTAAGCATG-TTATTGCTACTGTATTGATCT
1 T-TAAGCATGATTATTGCTACTGTAATGATCT
17910754 GTTATAGCAT
Statistics
Matches: 149, Mismatches: 34, Indels: 33
0.69 0.16 0.15
Matches are distributed among these distances:
32 15 0.10
33 22 0.15
34 102 0.68
35 10 0.07
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (34 bp):
TTAAGCATGATTATTGCTACTGTAATGATCTATT
Found at i:17910605 original size:68 final size:67
Alignment explanation
Indices: 17910522--17910753 Score: 279
Period size: 68 Copynumber: 3.4 Consensus size: 67
17910512 AAATACATGT
*
17910522 TAAGCAAGCTTATTGCTACTGTAATGATCTATTTTAAGCATGATAATCT-CTATAGTATCGACTC
1 TAAGCATG-TTATTGCTACTGTAATGATCTATTTTAAGCATGATAAT-TGCTATAGTATCGACTC
17910586 ATTA
64 ATTA
* * *
17910590 TAAGCATGATTATTGCTGCTTTAATGATCTATTTTAAGCATGATAATTGCTATTGTATCGACTCA
1 TAAGCATG-TTATTGCTACTGTAATGATCTATTTTAAGCATGATAATTGCTATAGTATCGACTCA
17910655 TTA
65 TTA
* * * * * * * **
17910658 TAAGCATGTTTATTACTACTATAATGATCTTTTTTAAGCATAATAATTGTTACAGTATC-AATTT
1 TAAGCATG-TTATTGCTACTGTAATGATCTATTTTAAGCATGATAATTGCTATAGTATCGACTCA
*
17910722 TTG
65 TTA
*
17910725 TAAGCATGTTATTGCTACTGTATTGATCT
1 TAAGCATGTTATTGCTACTGTAATGATCT
17910754 GTTATAGCAT
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
66 18 0.13
67 13 0.09
68 111 0.78
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (67 bp):
TAAGCATGTTATTGCTACTGTAATGATCTATTTTAAGCATGATAATTGCTATAGTATCGACTCAT
TA
Found at i:17911772 original size:24 final size:24
Alignment explanation
Indices: 17911739--17911787 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
17911729 TCAAAGTATT
17911739 AGGATAAAATTATAATTTTGCATA
1 AGGATAAAATTATAATTTTGCATA
* * *
17911763 AGGATTAAATTGTAATTTTTCATA
1 AGGATAAAATTATAATTTTGCATA
17911787 A
1 A
17911788 ATATGAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (24 bp):
AGGATAAAATTATAATTTTGCATA
Found at i:17913485 original size:29 final size:29
Alignment explanation
Indices: 17913453--17913584 Score: 106
Period size: 29 Copynumber: 4.6 Consensus size: 29
17913443 GTCCATCCGG
*
17913453 CCCAATTCACGTTCATATGGCCCACTAGA
1 CCCAATTCACATTCATATGGCCCACTAGA
* * *
17913482 CCCAATT-ATATTCACATGGCCCACTAGG
1 CCCAATTCACATTCATATGGCCCACTAGA
* * ** *
17913510 CCCAAATCACATTTATATGGCCCTTTAGG
1 CCCAATTCACATTCATATGGCCCACTAGA
* * * * * *
17913539 CCCAAATCACATTTATGTGGCCTATTAGG
1 CCCAATTCACATTCATATGGCCCACTAGA
*
17913568 CCCAAATCACATT-ATAT
1 CCCAATTCACATTCATAT
17913585 TCATGCTCAT
Statistics
Matches: 88, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 62 0.70
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
CCCAATTCACATTCATATGGCCCACTAGA
Found at i:17913543 original size:57 final size:58
Alignment explanation
Indices: 17913451--17913584 Score: 137
Period size: 57 Copynumber: 2.3 Consensus size: 58
17913441 TGGTCCATCC
* * * * *
17913451 GGCCCAATTCACGTTCATATGGCCCACTAGACCC-AATTATATTCACATGGCCCACTA
1 GGCCCAAATCACATTTATATGGCCCACTAGACCCAAATCACATTCACATGGCCCACTA
** * * ** * *
17913508 GGCCCAAATCACATTTATATGGCCCTTTAGGCCCAAATCACATTTATGTGGCCTATTA
1 GGCCCAAATCACATTTATATGGCCCACTAGACCCAAATCACATTCACATGGCCCACTA
17913566 GGCCCAAATCACA-TTATAT
1 GGCCCAAATCACATTTATAT
17913585 TCATGCTCAT
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
57 34 0.54
58 29 0.46
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (58 bp):
GGCCCAAATCACATTTATATGGCCCACTAGACCCAAATCACATTCACATGGCCCACTA
Found at i:17915046 original size:7 final size:7
Alignment explanation
Indices: 17915034--17915059 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
17915024 ATTTATAAAA
17915034 CCCAAAG
1 CCCAAAG
17915041 CCCAAAG
1 CCCAAAG
17915048 CCCAAAG
1 CCCAAAG
17915055 CCCAA
1 CCCAA
17915060 TTCATCTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.46, G:0.12, T:0.00
Consensus pattern (7 bp):
CCCAAAG
Found at i:17919414 original size:78 final size:78
Alignment explanation
Indices: 17919280--17919433 Score: 272
Period size: 78 Copynumber: 2.0 Consensus size: 78
17919270 CATCCAAATT
* *
17919280 TAAAGCTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGTCCAAAACATGCATTG
1 TAAAACTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
*
17919345 GAAGTAGTTCATG
66 GAAGCAGTTCATG
*
17919358 TAAAACTTTTCACATACATTCACATTGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
1 TAAAACTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
17919423 GAAGCAGTTCA
66 GAAGCAGTTCA
17919434 GGACTAAACC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (78 bp):
TAAAACTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
GAAGCAGTTCATG
Found at i:17920752 original size:42 final size:42
Alignment explanation
Indices: 17920648--17920838 Score: 258
Period size: 42 Copynumber: 4.5 Consensus size: 42
17920638 CCAATGTCAT
* * *
17920648 ATCCTAGATATGGTCTTACATGTAATCTCATATCGATGCCA-
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
*
17920689 ATAACCCAGCTATGGTCTTACACGAAATCTCATATCGATGCCAC
1 AT--CCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
* *
17920733 ATCCCAGATGTGGTCTTACATGAAATCTCATATCGATGCCAC
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
* * * * *
17920775 ATCCCAGGTGTGGTCATACACAAAATCTCATATCGATGCCAT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
17920817 ATCCCAGATATGGTCTTACACG
1 ATCCCAGATATGGTCTTACACG
17920839 TAGACTTAGT
Statistics
Matches: 131, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.02
42 92 0.70
43 35 0.27
44 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
Found at i:17925204 original size:30 final size:30
Alignment explanation
Indices: 17925168--17925226 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
17925158 TTTACAAGCC
* * *
17925168 TAGGGGCTAAGTTATAATTATGTGAAAGTT
1 TAGGGGCAAAATTATAATTATGTCAAAGTT
*
17925198 TAGGGGCAAAATTATAATTTTGTCAAAGT
1 TAGGGGCAAAATTATAATTATGTCAAAGT
17925227 ATGATTTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
TAGGGGCAAAATTATAATTATGTCAAAGTT
Found at i:17930762 original size:49 final size:49
Alignment explanation
Indices: 17930640--17930872 Score: 189
Period size: 49 Copynumber: 4.9 Consensus size: 49
17930630 CCACATTATG
* *
17930640 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-T---T-GACA
1 AGAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGACATCGATAGATA
* * * *
17930685 TGTGTCAGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATA
1 AGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATA
* * * * *
17930734 AGAGCCAATGTAAGACCTGTCTAGGACATGGCATCGGCCTCGATATATGA
1 AGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGAT-A
* * * *
17930784 A-A-CTCAGTGTAAGACTTGTCTGGGACATGGCATCGACTTAGAT-G-TG
1 AGAGC-CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATA
* * *
17930830 TGAGCCAGTGTAAGACCATGT-TCGGAACATGGCATCGGCATCG
1 AGAGCCAGTGTAAGACC-TGTCT-GGGACATGGCATCGACATCG
17930873 TACCCTATGT
Statistics
Matches: 148, Mismatches: 29, Indels: 19
0.76 0.15 0.10
Matches are distributed among these distances:
44 20 0.14
45 14 0.09
47 14 0.09
48 22 0.15
49 76 0.51
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATA
Found at i:17930806 original size:98 final size:93
Alignment explanation
Indices: 17930640--17930868 Score: 284
Period size: 98 Copynumber: 2.4 Consensus size: 93
17930630 CCACATTATG
* * *
17930640 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGACATGTGTCAGTGTAAGACTTG
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGACATATGTCAGTGTAAGACTTG
*
17930704 TCTGGGACATGGCATCGACATCGATAGATA
66 TCTGGGACATGGCATCGACATAGAT-G-TA
* *
17930734 AGAGCCAATGTAAGACC-TGTCTAGGACATGGCATCGGCCTCGATATATGAAACTCAGTGTAAGA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGACATATG----TCAGTGTAAGA
* *
17930798 CTTGTCTGGGACATGGCATCGACTTAGATGTG
62 CTTGTCTGGGACATGGCATCGACATAGATGTA
* *
17930830 TGAGCCAGTGTAAGACCATGT-TCGGAACATGGCATCGGC
1 AGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGC
17930869 ATCGTACCCT
Statistics
Matches: 117, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
93 19 0.16
94 24 0.21
96 19 0.16
97 17 0.15
98 38 0.32
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (93 bp):
AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGACATATGTCAGTGTAAGACTTG
TCTGGGACATGGCATCGACATAGATGTA
Found at i:17931260 original size:28 final size:28
Alignment explanation
Indices: 17931228--17931283 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
17931218 TATCAATGTG
*
17931228 GTGAAAATGAATTAATAAGAGGTGATAA
1 GTGAAAATAAATTAATAAGAGGTGATAA
17931256 GTGAAAATAAATTAATAAGAGGTGATAA
1 GTGAAAATAAATTAATAAGAGGTGATAA
17931284 ACTTAGTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (28 bp):
GTGAAAATAAATTAATAAGAGGTGATAA
Done.