Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 67 of 373
Found at i:20245209 original size:147 final size:145
Alignment explanation
Indices: 20244942--20245340 Score: 647
Period size: 147 Copynumber: 2.7 Consensus size: 145
20244932 GTGATCTGAA
*
20244942 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTTAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
* * *
20245007 GTCTCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTACC
20245072 TCAGCGTGTCCCGAG
131 TCAGCGTGTCCCGAG
* * * * *
20245087 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATATCTCAGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTGAAATTACCTCAGC
*
20245152 ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTA
64 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTA
*
20245217 CCTCAGTGTGTCCCGAG
129 CCTCAGCGTGTCCCGAG
*
20245234 GCTCAACTCAGCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
* *
20245298 GTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
66 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
20245341 TTTTTGAAAC
Statistics
Matches: 232, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
144 64 0.28
145 35 0.15
146 7 0.03
147 126 0.54
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (145 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTACC
TCAGCGTGTCCCGAG
Found at i:20245251 original size:219 final size:220
Alignment explanation
Indices: 20244942--20245342 Score: 714
Period size: 219 Copynumber: 1.8 Consensus size: 220
20244932 GTGATCTGAA
* *
20244942 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTTAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAAATTGAAATTACCTCAGCGT
* *
20245007 GTCTCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
66 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
*
20245072 TCAGCGTGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAAACAAAAAT
131 TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAAT
20245137 TGAAAATATCTCAGTATGTCTTGAG
196 TGAAAATATCTCAGTATGTCTTGAG
*
20245162 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAAAAATTGAAATTACCTCAGTGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAAATTGAAATTACCTCAGCGT
*
20245226 GTCCCGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
66 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
* *
20245291 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTT
131 TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
20245343 TTTGAAACAG
Statistics
Matches: 172, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
219 142 0.83
220 30 0.17
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (220 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAAATTGAAATTACCTCAGCGT
GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAAT
TGAAAATATCTCAGTATGTCTTGAG
Found at i:20255791 original size:17 final size:18
Alignment explanation
Indices: 20255749--20255791 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
20255739 AGGGGGCGGT
*
20255749 CACCGGCCGATCGTCGGC
1 CACCGCCCGATCGTCGGC
* *
20255767 CGCTGCCCG-TCGTCGGC
1 CACCGCCCGATCGTCGGC
20255784 CACCGCCC
1 CACCGCCC
20255792 ACGGTGGCCG
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.07, C:0.51, G:0.30, T:0.12
Consensus pattern (18 bp):
CACCGCCCGATCGTCGGC
Found at i:20256168 original size:30 final size:27
Alignment explanation
Indices: 20256132--20256215 Score: 98
Period size: 26 Copynumber: 3.0 Consensus size: 27
20256122 GGTTTCTTGG
**
20256132 TTTTTTTTGGGGGGTTAGGTTTTTCTTTTT
1 TTTTTTTTTTGGGGTTAGG--TTT-TTTTT
* *
20256162 TTTTTTTTTTTGGGTTAGG-TTTTTTC
1 TTTTTTTTTTGGGGTTAGGTTTTTTTT
20256188 TTTTTTTTTTGGGGTTAGGTTTTTTTT
1 TTTTTTTTTTGGGGTTAGGTTTTTTTT
20256215 T
1 T
20256216 GGGAGGGGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
26 22 0.47
27 9 0.19
30 16 0.34
ACGTcount: A:0.04, C:0.02, G:0.23, T:0.71
Consensus pattern (27 bp):
TTTTTTTTTTGGGGTTAGGTTTTTTTT
Found at i:20256170 original size:31 final size:31
Alignment explanation
Indices: 20256132--20256197 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
20256122 GGTTTCTTGG
*
20256132 TTTTTTTTGGGGGGTTAGG-TTTTTCTTTTT
1 TTTTTTTTTGGGGGTTAGGTTTTTTCTTTTT
**
20256162 TTTTTTTTTTTGGGTTAGGTTTTTTCTTTTT
1 TTTTTTTTTGGGGGTTAGGTTTTTTCTTTTT
20256193 TTTTT
1 TTTTT
20256198 GGGGTTAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 16 0.50
31 16 0.50
ACGTcount: A:0.03, C:0.03, G:0.20, T:0.74
Consensus pattern (31 bp):
TTTTTTTTTGGGGGTTAGGTTTTTTCTTTTT
Found at i:20256186 original size:26 final size:26
Alignment explanation
Indices: 20256157--20256215 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
20256147 TAGGTTTTTC
20256157 TTTTTTTTTTTTTTTT-GGGTTAGGT
1 TTTTTTTTTTTTTTTTGGGGTTAGGT
*
20256182 TTTTTCTTTTTTTTTTGGGGTTAGGT
1 TTTTTTTTTTTTTTTTGGGGTTAGGT
20256208 TTTTTTTT
1 TTTTTTTT
20256216 GGGAGGGGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 15 0.48
26 16 0.52
ACGTcount: A:0.03, C:0.02, G:0.19, T:0.76
Consensus pattern (26 bp):
TTTTTTTTTTTTTTTTGGGGTTAGGT
Found at i:20256338 original size:19 final size:17
Alignment explanation
Indices: 20256293--20256339 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
20256283 TGTAAATGGG
*
20256293 TTTA-TGGGTTAAGGGT
1 TTTAGTGGGTTTAGGGT
20256309 TTTAGTGGGTTTAGAGGT
1 TTTAGTGGGTTTAG-GGT
*
20256327 TTTGGTTGGGTTT
1 TTTAG-TGGGTTT
20256340 TGATATAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 4 0.15
17 8 0.31
18 7 0.27
19 7 0.27
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (17 bp):
TTTAGTGGGTTTAGGGT
Found at i:20256850 original size:17 final size:18
Alignment explanation
Indices: 20256822--20256866 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
20256812 TAGTGTTATT
20256822 AAATACAAAAAT-ATTTTC
1 AAATA-AAAAATGATTTTC
*
20256840 AAATAAAAAATGTTTTTC
1 AAATAAAAAATGATTTTC
20256858 AATATAAAA
1 AA-ATAAAA
20256867 CACTTATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 6 0.25
18 12 0.50
19 6 0.25
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATAAAAAATGATTTTC
Found at i:20257387 original size:13 final size:13
Alignment explanation
Indices: 20257369--20257396 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20257359 AAAAAATTTA
20257369 TTGATATTTTTTG
1 TTGATATTTTTTG
20257382 TTGATATTTTTTG
1 TTGATATTTTTTG
20257395 TT
1 TT
20257397 ATGAAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (13 bp):
TTGATATTTTTTG
Found at i:20261488 original size:20 final size:20
Alignment explanation
Indices: 20261443--20261494 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
20261433 CCCCACCCAA
*
20261443 ATTTCCCCAAATCCCTAACT
1 ATTTCCCCAAATCCCTAAAT
*
20261463 -TTTCCCCTAATCCCTAAAT
1 ATTTCCCCAAATCCCTAAAT
*
20261482 ATTTCCCCGAATC
1 ATTTCCCCAAATC
20261495 AAAATCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.27, C:0.38, G:0.02, T:0.33
Consensus pattern (20 bp):
ATTTCCCCAAATCCCTAAAT
Found at i:20263648 original size:10 final size:10
Alignment explanation
Indices: 20263618--20263647 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
20263608 GGTTAGCTAC
20263618 TCTTTTATTT
1 TCTTTTATTT
20263628 TCTTTTATTT
1 TCTTTTATTT
20263638 TCTTTT-TTT
1 TCTTTTATTT
20263647 T
1 T
20263648 TAAATTACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (10 bp):
TCTTTTATTT
Found at i:20297230 original size:41 final size:41
Alignment explanation
Indices: 20297185--20297398 Score: 243
Period size: 41 Copynumber: 5.3 Consensus size: 41
20297175 GTATTAAAAG
20297185 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * *
20297226 GAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * *
20297266 GAAGGGCTTTCGGGCCAATGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * * * *
20297307 GAAGGGATTTTGAGCTAGTGTCATAAT-CGAACCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * * * *
20297347 GAAGGGCCTTCGGGCCAATGTCATAATCAGAGCTTGATCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
20297388 GAAGGGCTTTT
1 GAAGGGCTTTT
20297399 TGAGTCGGCG
Statistics
Matches: 137, Mismatches: 34, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
40 63 0.46
41 74 0.54
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (41 bp):
GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
Found at i:20297320 original size:81 final size:81
Alignment explanation
Indices: 20297185--20297398 Score: 347
Period size: 81 Copynumber: 2.6 Consensus size: 81
20297175 GTATTAAAAG
* * *
20297185 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 GAAGGGCTTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
20297250 AACCGAACCTAGTTTC
66 AACCGAACCTAGTTTC
* *
20297266 GAAGGGCTTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGATTTTGAGCTAGTGTCAT
1 GAAGGGCTTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
20297331 AATCGAACCTAGTTTC
66 AACCGAACCTAGTTTC
* * *
20297347 GAAGGGCCTTCGGGCCAATGTCATAATCAGAGCTTGATCTCGAAGGGCTTTT
1 GAAGGGCTTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
20297399 TGAGTCGGCG
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 123 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (81 bp):
GAAGGGCTTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
AACCGAACCTAGTTTC
Found at i:20304120 original size:41 final size:41
Alignment explanation
Indices: 20304075--20304288 Score: 252
Period size: 41 Copynumber: 5.3 Consensus size: 41
20304065 GTATTAAAAG
20304075 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * *
20304116 GAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * * *
20304156 GAAGGGCCTTCGGGCCAATGTCATAATCTGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * * *
20304197 GAAGGGATTTTGAGCCAGTGTCATAAT-CGAACCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * *
20304237 GAAGGGCCTTTGGGCCAATGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
*
20304278 AAAGGGCTTTT
1 GAAGGGCTTTT
20304289 TGAGTCAGCA
Statistics
Matches: 138, Mismatches: 33, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
40 63 0.46
41 75 0.54
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (41 bp):
GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
Found at i:20304178 original size:40 final size:41
Alignment explanation
Indices: 20304075--20304267 Score: 201
Period size: 40 Copynumber: 4.8 Consensus size: 41
20304065 GTATTAAAAG
* * * * * *
20304075 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCCTTTGAGCCAATGTCATAATCCGAACCTAGTTTC
* *
20304116 GAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCCTTTGAGCCAATGTCATAATCCGAACCTAGTTTC
* * * * * * *
20304156 GAAGGGCCTTCGGGCCAATGTCATAATCTGAGCTTGGTCTC
1 GAAGGGCCTTTGAGCCAATGTCATAATCCGAACCTAGTTTC
** *
20304197 GAAGGGATTTTGAGCCAGTGTCATAAT-CGAACCTAGTTTC
1 GAAGGGCCTTTGAGCCAATGTCATAATCCGAACCTAGTTTC
*
20304237 GAAGGGCCTTTGGGCCAATGTCATAATCCGA
1 GAAGGGCCTTTGAGCCAATGTCATAATCCGA
20304268 GCTTGGTCTC
Statistics
Matches: 123, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
40 63 0.51
41 60 0.49
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
GAAGGGCCTTTGAGCCAATGTCATAATCCGAACCTAGTTTC
Found at i:20304210 original size:81 final size:81
Alignment explanation
Indices: 20304088--20304288 Score: 348
Period size: 81 Copynumber: 2.5 Consensus size: 81
20304078 GGGCTTTTGA
*
20304088 GCCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
1 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
20304153 TTCGAAGGGCCTTCGG
66 TTCGAAGGGCCTTCGG
* * *
20304169 GCCAATGTCATAATCTGAGCTTGGTCTCGAAGGGATTTTGAGCCAGTGTCATAATCGAACCTAGT
1 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
*
20304234 TTCGAAGGGCCTTTGG
66 TTCGAAGGGCCTTCGG
*
20304250 GCCAATGTCATAATCCGAGCTTGGTCTCAAAGGGCTTTT
1 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
20304289 TGAGTCAGCA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 112 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (81 bp):
GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
TTCGAAGGGCCTTCGG
Found at i:20310526 original size:45 final size:45
Alignment explanation
Indices: 20310422--20310554 Score: 232
Period size: 44 Copynumber: 3.0 Consensus size: 45
20310412 TTATATGAAC
**
20310422 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTCATTTTT
1 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
20310467 TT-CTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
1 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
*
20310511 TTACTAAGCATTAAATGCTTACTTTATTTCATTTCCTTTGTTTT
1 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTT
20310555 ATAGTACAGT
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
44 42 0.50
45 42 0.50
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (45 bp):
TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
Found at i:20320970 original size:13 final size:13
Alignment explanation
Indices: 20320952--20320978 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20320942 GCTCGTATGG
20320952 TCATCTTGAACCA
1 TCATCTTGAACCA
20320965 TCATCTTGAACCA
1 TCATCTTGAACCA
20320978 T
1 T
20320979 ATACTCAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (13 bp):
TCATCTTGAACCA
Found at i:20322196 original size:16 final size:16
Alignment explanation
Indices: 20322175--20322205 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20322165 CATTTCAACA
20322175 ATGTTACGAAAACATG
1 ATGTTACGAAAACATG
*
20322191 ATGTTATGAAAACAT
1 ATGTTACGAAAACAT
20322206 ATACCATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (16 bp):
ATGTTACGAAAACATG
Found at i:20334477 original size:43 final size:43
Alignment explanation
Indices: 20334430--20334513 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
20334420 AAATCATATA
* *
20334430 ACAATGCCAATGTCCTAAACATGGTTTTACACGTAATCACAAT
1 ACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCACAAT
* *
20334473 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCACA
20334514 TCTCGGTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCACAAT
Found at i:20341418 original size:5 final size:5
Alignment explanation
Indices: 20341408--20341448 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
20341398 TCTCTTGAAC
*
20341408 TTTTA TTTTA TTTTA -TTTA TGTTA TTTTA TTTTA TTGTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA T
20341449 AAAAACCCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
4 4 0.12
5 24 0.75
6 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:20341432 original size:14 final size:14
Alignment explanation
Indices: 20341409--20341439 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20341399 CTCTTGAACT
*
20341409 TTTATTTTATTTTA
1 TTTATGTTATTTTA
20341423 TTTATGTTATTTTA
1 TTTATGTTATTTTA
20341437 TTT
1 TTT
20341440 TATTGTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATGTTATTTTA
Found at i:20344406 original size:20 final size:20
Alignment explanation
Indices: 20344373--20344420 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
20344363 CCCGCCCATA
* *
20344373 AACGAACTCGGACTCAACTC
1 AACGAGCTCAGACTCAACTC
20344393 AACGAGCTCAGACTCAACTC
1 AACGAGCTCAGACTCAACTC
20344413 AACGAGCT
1 AACGAGCT
20344421 TGGATGCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.33, G:0.17, T:0.15
Consensus pattern (20 bp):
AACGAGCTCAGACTCAACTC
Found at i:20368056 original size:20 final size:20
Alignment explanation
Indices: 20368031--20368068 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
20368021 TAGTGGTATC
20368031 AGAGCCAGGTTCAAGACTCG
1 AGAGCCAGGTTCAAGACTCG
20368051 AGAGCCAGGTTCAAGACT
1 AGAGCCAGGTTCAAGACT
20368069 TGACTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.29, T:0.16
Consensus pattern (20 bp):
AGAGCCAGGTTCAAGACTCG
Found at i:20370461 original size:40 final size:40
Alignment explanation
Indices: 20370403--20370608 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
20370393 AGATTTAGCT
* **
20370403 GGATATAG-CAACTCGCACAAATGCCTTCGGTTCTTAGCCC
1 GGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCC
20370443 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
* *
20370483 GGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCTC
1 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
20370523 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
20370563 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
*
20370603 GTATAT
1 GGATAT
20370609 CATTCGAATA
Statistics
Matches: 157, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 156 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
Found at i:20376715 original size:12 final size:12
Alignment explanation
Indices: 20376698--20376737 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
20376688 CACACGGGCG
20376698 TGTGGTAGCCCA
1 TGTGGTAGCCCA
20376710 TGTGGTAGCCCA
1 TGTGGTAGCCCA
* *
20376722 TGTGGCAGGCCA
1 TGTGGTAGCCCA
20376734 TGTG
1 TGTG
20376738 ACTGAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.25
Consensus pattern (12 bp):
TGTGGTAGCCCA
Found at i:20378938 original size:48 final size:48
Alignment explanation
Indices: 20378885--20379201 Score: 261
Period size: 48 Copynumber: 6.6 Consensus size: 48
20378875 TATGTGTGCC
* * *
20378885 AGTGTAAAACCATGTCTGGGACATGGCGTCGGCCACGATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGAGCT
* * ** * *
20378933 AGTGTAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGAGCT
* * * ** *
20378981 AGTGTAAGACCATGTGTGGGACATGGCATCAGCATTAATATGTGCGA--T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC--CACGATGTGAGAGCT
* * * * **
20379029 AGTGTAAGACGATGTCTGGGACATGGCAACAGCCACAACATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGAGCT
* * * * *
20379077 AATGTAAGACCATGT-TGGAATATGGCATCGG-CATTGA-GACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATG-TGAGAGCT
* *
20379124 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGT-A-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACG--ATGTGAGAGCT
* *
20379172 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
20379202 AGTAATTCAC
Statistics
Matches: 212, Mismatches: 46, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
46 8 0.04
47 34 0.16
48 159 0.75
49 2 0.01
50 8 0.04
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGAGCT
Found at i:20379140 original size:95 final size:95
Alignment explanation
Indices: 20378973--20379203 Score: 284
Period size: 95 Copynumber: 2.4 Consensus size: 95
20378963 GGTGATGTTG
* * * * *
20378973 TGAGAGCTAGTGTAAGACCATGTGTGGGACATGGCATCAGCATTAATATGTGCGATAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGT-TGGAACATGGCATCAGCATTAAGACGAGAGATAGTGTAAGA
*
20379038 CGATGTCTGGGACATGGCAACAGCCACAACA
65 CCATGTCTGGGACATGGCAACAGCCACAACA
* * * * *
20379069 TGAGAGCTAATGTAAGACCATGTTGGAATATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGAC
1 TGAGAGCTAGTGTAAGACCATGTTGGAACATGGCATCAGCATTAAGACGAGAGATAGTGTAAGAC
* * * *
20379134 CATGTCTGGGACATGGCATCGGCCTCGACA
66 CATGTCTGGGACATGGCAACAGCCACAACA
*
20379164 TGTA-AGCCAGTGTAAGACCATGTTTGGAACATGGCATCAG
1 TG-AGAGCTAGTGTAAGACCATG-TTGGAACATGGCATCAG
20379204 TAATTCACCC
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
95 76 0.67
96 38 0.33
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (95 bp):
TGAGAGCTAGTGTAAGACCATGTTGGAACATGGCATCAGCATTAAGACGAGAGATAGTGTAAGAC
CATGTCTGGGACATGGCAACAGCCACAACA
Found at i:20379176 original size:143 final size:144
Alignment explanation
Indices: 20378882--20379199 Score: 363
Period size: 143 Copynumber: 2.2 Consensus size: 144
20378872 TGATATGTGT
* ** * * ** *
20378882 GCCAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCACGATGTGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCCACAACATGAGAGCCAATGTAAGACCATG
* * * *
20378947 TTTGGAACATGGCATCGGTGATGTTGTGAGAGCTAGTGTAAGACCATGTGTGGGACATGGCATCA
66 TTTGGAACATGGCATCGGTCATGTAGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
* * **
20379012 GCATTAATATGTGC
131 GCATCAACATGTAA
** * *
20379026 GATAGTGTAAGACGATGTCTGGGACATGGCAACAGCCACAACATGAGAGCTAATGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCCACAACATGAGAGCCAATGTAAGACCATG
*
20379091 -TTGGAATATGGCATCGG-CAT-TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TTTGGAACATGGCATCGGTCATGT-AG-CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
* * *
20379153 CGGCCTCGACATGTAA
129 CAGCATCAACATGTAA
* *
20379169 GCCAGTGTAAGACCATGTTTGGAACATGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCA
20379200 TCAGTAATTC
Statistics
Matches: 143, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
141 1 0.01
142 3 0.02
143 86 0.60
144 53 0.37
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCCACAACATGAGAGCCAATGTAAGACCATG
TTTGGAACATGGCATCGGTCATGTAGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
GCATCAACATGTAA
Found at i:20380746 original size:18 final size:18
Alignment explanation
Indices: 20380705--20380746 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
20380695 AAATTTCAAC
* * *
20380705 TCATCAAAACTCAGTTTT
1 TCATAAAAACTAAGGTTT
20380723 TC-TAAAAACTAAGGTTT
1 TCATAAAAACTAAGGTTT
20380740 TCATAAA
1 TCATAAA
20380747 TAAAAATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (18 bp):
TCATAAAAACTAAGGTTT
Found at i:20382995 original size:28 final size:28
Alignment explanation
Indices: 20382963--20383090 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
20382953 ATAGTAAGTC
*
20382963 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
20382991 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
20383020 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
20383048 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
20383077 CGCACACTTAGTGC
1 CGCACACTTAGTGC
20383091 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:20383053 original size:57 final size:57
Alignment explanation
Indices: 20382962--20383090 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
20382952 TATAGTAAGT
*
20382962 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
20383019 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
20383076 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
20383091 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:20390571 original size:15 final size:16
Alignment explanation
Indices: 20390551--20390580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20390541 TCCTTGGTTG
20390551 AGAATT-TGGTAAGAC
1 AGAATTGTGGTAAGAC
20390566 AGAATTGTGGTAAGA
1 AGAATTGTGGTAAGA
20390581 TAGTAAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.03, G:0.30, T:0.27
Consensus pattern (16 bp):
AGAATTGTGGTAAGAC
Found at i:20393985 original size:40 final size:40
Alignment explanation
Indices: 20393941--20394204 Score: 397
Period size: 40 Copynumber: 6.6 Consensus size: 40
20393931 AAGTGAATAT
* * * * *
20393941 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA
20393981 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20394021 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20394061 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
20394101 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20394141 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20394180 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
20394205 TGAACGAGGA
Statistics
Matches: 211, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 35 0.17
40 176 0.83
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:20394115 original size:120 final size:119
Alignment explanation
Indices: 20393902--20394204 Score: 401
Period size: 120 Copynumber: 2.5 Consensus size: 119
20393892 TTGAATGCTG
* * * * * * * * *
20393902 TCCGGGCTAAGTCTCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
*
20393966 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
20394022 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * *
20394087 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
20394142 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
20394205 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
119 35 0.22
120 123 0.76
121 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:20401970 original size:40 final size:40
Alignment explanation
Indices: 20401926--20402227 Score: 459
Period size: 40 Copynumber: 7.6 Consensus size: 40
20401916 AAGTGAATAT
* * * * *
20401926 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA
20401966 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20402005 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20402045 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20402084 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
20402124 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20402164 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20402203 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
20402228 TGAACGAGGA
Statistics
Matches: 248, Mismatches: 12, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
39 109 0.44
40 139 0.56
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:20401986 original size:79 final size:79
Alignment explanation
Indices: 20401926--20402227 Score: 455
Period size: 79 Copynumber: 3.8 Consensus size: 79
20401916 AAGTGAATAT
* * * * *
20401926 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCGAAGGCATT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATT
20401990 CGTGCGAGTTATTAA
65 CGTGCGAGTTATTAA
20402005 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTC
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTC
20402070 GTGCGAGTTATTAA
66 GTGCGAGTTATTAA
20402084 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGT-CCGAAGGCATT
*
20402149 CGTGCGAGTTGTTAA
65 CGTGCGAGTTATTAA
* * * * * *
20402164 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGT-CCGAAGGCATT
20402228 TGAACGAGGA
Statistics
Matches: 209, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
78 1 0.00
79 159 0.76
80 49 0.23
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTC
GTGCGAGTTATTAA
Found at i:20402102 original size:119 final size:118
Alignment explanation
Indices: 20401926--20402227 Score: 471
Period size: 119 Copynumber: 2.5 Consensus size: 118
20401916 AAGTGAATAT
* * *
20401926 ATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGT-CCGAAGGCATT
1 ATCCGGGTTAAG-TCCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
20401990 CGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
64 CGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
20402045 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 ATCCGGGTTAAGTCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
20402110 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
65 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * * * *
20402164 ATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGT-CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
20402228 TGAACGAGGA
Statistics
Matches: 169, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
117 3 0.02
118 33 0.20
119 122 0.72
120 11 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (118 bp):
ATCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:20402247 original size:79 final size:80
Alignment explanation
Indices: 20401926--20402262 Score: 427
Period size: 79 Copynumber: 4.3 Consensus size: 80
20401916 AAGTGAATAT
* * * * *
20401926 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGT-CCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
20401989 TCGTGCGAGTTA-TTAA
65 TCGTGCGAG-TAGTTAA
20402005 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGT-CCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
20402069 CGTGCGAGTTA-TTAA
66 CGTGCGAG-TAGTTAA
20402084 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
*
20402149 CGTGCGAGTTGTTAA
66 CGTGCGAGTAGTTAA
* * * * * *
20402164 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
* ** * * *
20402228 TGAACGAGGAGCTAT
66 CGTGCGAGTAGTTAA
*
20402243 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
20402263 TACGTGATTG
Statistics
Matches: 234, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
78 15 0.06
79 172 0.74
80 47 0.20
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
CGTGCGAGTAGTTAA
Found at i:20402247 original size:119 final size:119
Alignment explanation
Indices: 20401926--20402262 Score: 403
Period size: 119 Copynumber: 2.8 Consensus size: 119
20401916 AAGTGAATAT
* * * * * *
20401926 ATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGT-CCGAAGGCATT
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** * *
20401990 CGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
65 CGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20402045 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * * *
20402110 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
66 GAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20402164 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
20402228 TGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
65 CGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
20402263 TACGTGATTG
Statistics
Matches: 196, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
118 52 0.27
119 133 0.68
120 11 0.06
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (119 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:20415106 original size:40 final size:40
Alignment explanation
Indices: 20415062--20415284 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
20415052 AAGTGAATAT
* * * *
20415062 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
*
20415102 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
*
20415141 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
**
20415181 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
* *
20415221 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
* * *
20415260 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
20415285 TGAACGAGGA
Statistics
Matches: 168, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 73 0.43
40 95 0.57
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:20415159 original size:79 final size:80
Alignment explanation
Indices: 20415062--20415284 Score: 308
Period size: 79 Copynumber: 2.8 Consensus size: 80
20415052 AAGTGAATAT
* *
20415062 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
20415126 TCGTGCGAGTTATT-A
65 TCGTGCGAGTTATTAA
* * *
20415141 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
20415206 CGTGCGAGTTGTTAA
66 CGTGCGAGTTATTAA
* * * * * *
20415221 ATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
20415285 TGAACGAGGA
Statistics
Matches: 127, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 105 0.83
80 21 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
CGTGCGAGTTATTAA
Found at i:20415304 original size:79 final size:80
Alignment explanation
Indices: 20415062--20415318 Score: 238
Period size: 79 Copynumber: 3.3 Consensus size: 80
20415052 AAGTGAATAT
* * * * * *
20415062 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
20415126 TCGTGCGAGTTA--TTA
65 TCGAACGAG-GAGCTAA
* * *
20415141 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
20415206 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
20415221 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
20415285 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
20415300 ATCC-GGTTAAAT-CCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
20415319 TACGTGATTT
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
77 7 0.05
78 8 0.05
79 112 0.73
80 26 0.17
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:20415304 original size:119 final size:118
Alignment explanation
Indices: 20415053--20415318 Score: 295
Period size: 119 Copynumber: 2.2 Consensus size: 118
20415043 CTTTGTGCTA
* * * *
20415053 AGTGAATATATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCC
1 AGTGACTATATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCC
* * * **
20415118 GAAGGCATTCGTGCGAGTTATTAATCCGGGTTAAGTCCCGAAGGCATTCGTGCG
65 GAAGGCATTCGTGCGAGTTATAAAACCGGGCTAAGTCCCGAAGGCATTCGAACG
* * * * ** *
20415172 AGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCC
1 AGTGACTATATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCC
* * *
20415237 GAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACG
65 GAAGGCATTCGTGCGAGTTA-TAAAACCGGGCTAAGTCCCGAAGGCATTCGAACG
*
20415291 AG-GAGCTATATCC-GGTTAAATCCGAAGG
1 AGTGA-CTATATCCGGGTTAAGTCCGAAGG
20415319 TACGTGATTT
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
117 7 0.06
118 18 0.15
119 97 0.80
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (118 bp):
AGTGACTATATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCG
AAGGCATTCGTGCGAGTTATAAAACCGGGCTAAGTCCCGAAGGCATTCGAACG
Found at i:20423052 original size:40 final size:40
Alignment explanation
Indices: 20423008--20423311 Score: 477
Period size: 40 Copynumber: 7.6 Consensus size: 40
20422998 AAGTGAATAT
* * * * *
20423008 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA
20423048 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20423088 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20423128 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
20423168 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
20423208 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20423248 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
20423287 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
20423312 TGAACGAGGA
Statistics
Matches: 251, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 35 0.14
40 216 0.86
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:20428898 original size:24 final size:24
Alignment explanation
Indices: 20428870--20428975 Score: 106
Period size: 24 Copynumber: 4.4 Consensus size: 24
20428860 TTACTCATTT
*
20428870 GCACACATAGTGCCACGT-TTCCTC
1 GCACACATAGTGCCACGTAAT-CTC
* *
20428894 GCACACATAGTGCTATGTAATCTC
1 GCACACATAGTGCCACGTAATCTC
* * *
20428918 GCACACATAGTGCCACGTAGTTTTT
1 GCACACATAGTGCCACGTA-ATCTC
* * *
20428943 GCACACATAGTGCCGCATAATCTA
1 GCACACATAGTGCCACGTAATCTC
20428967 GCACACATA
1 GCACACATA
20428976 ATGCTGAAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 47 0.70
25 20 0.30
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCACGTAATCTC
Found at i:20428964 original size:49 final size:48
Alignment explanation
Indices: 20428870--20428975 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 48
20428860 TTACTCATTT
* ** *
20428870 GCACACATAGTGCCACGTTTCCTCGCACACATAGTGCTATGTAATCTC
1 GCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAATCTA
* * *
20428918 GCACACATAGTGCCACGTAGTT-TTTGCACACATAGTGCCGCATAATCTA
1 GCACACATAGTGCCACGT--TTCCTCGCACACATAGTGCCACATAATCTA
20428967 GCACACATA
1 GCACACATA
20428976 ATGCTGAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 18 0.37
49 29 0.59
50 2 0.04
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAATCTA
Found at i:20433621 original size:46 final size:46
Alignment explanation
Indices: 20433545--20433700 Score: 177
Period size: 47 Copynumber: 3.3 Consensus size: 46
20433535 CTATGGTCTT
* * **
20433545 GCACATATCACACACCGAAGCCATAGCCCAGCCATGGTCTTACACGAA
1 GCACATAT--CACACCGATGCCATATCCCAGATATGGTCTTACACGAA
* * *
20433593 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTACATAGAA
1 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACA-CGAA
* * *
20433640 GCACATATCACACCGATGCCGTATCTCAGATATGGTCTTATACGGAA
1 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACAC-GAA
*
20433687 GCTCATATCACACC
1 GCACATATCACACC
20433701 TTGCCATGGT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
46 29 0.32
47 56 0.61
48 7 0.08
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.22
Consensus pattern (46 bp):
GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACACGAA
Found at i:20450797 original size:46 final size:45
Alignment explanation
Indices: 20450669--20450882 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 45
20450659 TGTGAGGTAA
* * *
20450669 TGTAAGACATGTCTGGGACATGCATCGGCCATATTATG--AGAGCAAG
1 TGTAAGACATGTCTGGGACATGCATCGGCC-T-TGA-GACAGTGCCAG
* * *
20450715 TGTAAGACTATGTCTGGTAAATGGCATCGGCATTGAGACAAGTGCCAG
1 TGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTTGAGAC-AGTGCCAG
* * *
20450763 TGTAAGACATGTCTGGGACATACATCGACCTTGAGAC-GTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACAGT--GCCAG
* * * *
20450809 CGTAAGACATGTC-GGGACATGCATCGG-CTACGAGA-GGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGACAGTGCCAG
*
20450852 TGTAAGGCCATGTCTGGGACATGGCATCGGC
1 TGTAA-GACATGTCTGGGACAT-GCATCGGC
20450883 ACCTGATCCC
Statistics
Matches: 135, Mismatches: 20, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
43 7 0.05
44 11 0.08
45 26 0.19
46 46 0.34
47 23 0.17
48 22 0.16
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACAGTGCCAG
Found at i:20460465 original size:47 final size:47
Alignment explanation
Indices: 20460402--20460795 Score: 590
Period size: 47 Copynumber: 8.4 Consensus size: 47
20460392 CCCTTCGGGA
* * *
20460402 CTTATCACATTTATACACTTTCGCATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
20460449 CTTATCACATATATACACCTTCACATCCATCACATCGGTCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
20460496 CTTATCTCATATATACACTTTCACATTCATCAAATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20460543 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
20460590 CTTATCAGATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20460637 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
20460684 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20460731 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
20460778 CTTATCACATATACACAC
1 CTTATCACATATATACAC
20460796 CTTGTACATC
Statistics
Matches: 321, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 321 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:20469486 original size:23 final size:23
Alignment explanation
Indices: 20469459--20469504 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
20469449 ATGTGAAATA
20469459 TGTATGAGATATGTATATGTGGT
1 TGTATGAGATATGTATATGTGGT
20469482 TGTATGAGATATGTATATGTGGT
1 TGTATGAGATATGTATATGTGGT
20469505 AAAGCCGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.43
Consensus pattern (23 bp):
TGTATGAGATATGTATATGTGGT
Found at i:20469517 original size:71 final size:71
Alignment explanation
Indices: 20469413--20469552 Score: 271
Period size: 71 Copynumber: 2.0 Consensus size: 71
20469403 GAAATATATA
*
20469413 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
20469478 TGGTTG
66 TGGTTG
20469484 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
20469549 TGGT
66 TGGT
20469553 AAAGCCGAAT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (71 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
TGGTTG
Found at i:20469534 original size:48 final size:48
Alignment explanation
Indices: 20469482--20469861 Score: 609
Period size: 48 Copynumber: 8.1 Consensus size: 48
20469472 TATATGTGGT
20469482 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
20469530 TGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
20469578 TGTATGAGATAAGTATA--T-GT---G--G--TGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* *
20469616 TGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
20469664 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
20469712 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATA
*
20469762 TATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
20469810 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
20469858 TGTA
1 TGTA
20469862 GGCGATGTGT
Statistics
Matches: 312, Mismatches: 8, Indels: 24
0.91 0.02 0.07
Matches are distributed among these distances:
38 33 0.11
40 2 0.01
41 2 0.01
42 1 0.00
44 1 0.00
45 2 0.01
46 2 0.01
48 221 0.71
49 4 0.01
50 44 0.14
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (48 bp):
TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
Found at i:20469597 original size:17 final size:17
Alignment explanation
Indices: 20469575--20469635 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
20469565 CTAATGTGAA
20469575 ATATGTATGAGATAAGT
1 ATATGTATGAGATAAGT
* *
20469592 ATATGTGGTG-GCTAATGT
1 ATATGT-ATGAGATAA-GT
20469610 GAAATATGTATGAGATAAGT
1 ---ATATGTATGAGATAAGT
20469630 ATATGT
1 ATATGT
20469636 GGTAAAGTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
17 16 0.47
18 4 0.12
20 4 0.12
21 10 0.29
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (17 bp):
ATATGTATGAGATAAGT
Found at i:20469613 original size:38 final size:38
Alignment explanation
Indices: 20469562--20469638 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
20469552 TAAAGCCGAA
20469562 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
1 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
20469600 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
1 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
20469638 T
1 T
20469639 AAAGTCGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.35
Consensus pattern (38 bp):
TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
Found at i:20469649 original size:134 final size:141
Alignment explanation
Indices: 20469482--20469861 Score: 603
Period size: 134 Copynumber: 2.7 Consensus size: 141
20469472 TATATGTGGT
*
20469482 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
20469547 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA-T-GT-G-G-TGGCTAA
66 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATAGTGGTAGCGATGGCTAA
20469607 TGTG-AA-ATA
131 TGTGAAATATA
* *
20469616 TGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
20469681 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
66 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA-GTGGT--AG-CG-ATG
*
20469746 GTTAATGTGAAATATA
126 GCTAATGTGAAATATA
*
20469762 TATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
20469827 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
66 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
20469862 GGCGATGTGT
Statistics
Matches: 225, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
134 109 0.48
136 1 0.00
137 2 0.01
140 1 0.00
142 1 0.00
144 10 0.04
145 2 0.01
146 99 0.44
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (141 bp):
TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATAGTGGTAGCGATGGCTAA
TGTGAAATATA
Found at i:20469818 original size:98 final size:98
Alignment explanation
Indices: 20469600--20469858 Score: 459
Period size: 98 Copynumber: 2.7 Consensus size: 98
20469590 GTATATGTGG
* *
20469600 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTG-AA-AT
1 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
20469663 ATGTATGAGATATGTATATGTGGTAAAGCCGAA
66 ATATATGAGATATGTATATGTGGTAAAGCCGAA
*
20469696 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATAT
1 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
20469761 ATATATGAGATATGTATATGTGGTAAAGCCGAA
66 ATATATGAGATATGTATATGTGGTAAAGCCGAA
*
20469794 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
20469859 GTAGGCGATG
Statistics
Matches: 155, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
96 56 0.36
97 2 0.01
98 97 0.63
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (98 bp):
TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
ATATATGAGATATGTATATGTGGTAAAGCCGAA
Found at i:20470080 original size:13 final size:13
Alignment explanation
Indices: 20470062--20470089 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20470052 AAGACCCGAT
20470062 GACTACGTGTGGA
1 GACTACGTGTGGA
20470075 GACTACGTGTGGA
1 GACTACGTGTGGA
20470088 GA
1 GA
20470090 TTATGTCCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.39, T:0.21
Consensus pattern (13 bp):
GACTACGTGTGGA
Found at i:20470103 original size:50 final size:50
Alignment explanation
Indices: 20470025--20470126 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
20470015 AAGACTCGAT
20470025 GACTACGTGTGGAGATTATGTCCAGGTAAGACCCGATGACTACGTGTGGA
1 GACTACGTGTGGAGATTATGTCCAGGTAAGACCCGATGACTACGTGTGGA
*
20470075 GACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
1 GACTACGTGTGGAGATTATGTCCAGGTAAGACCCGATGACTACGTGTGGA
20470125 GA
1 GA
20470127 TTTTGTCTGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (50 bp):
GACTACGTGTGGAGATTATGTCCAGGTAAGACCCGATGACTACGTGTGGA
Found at i:20470166 original size:37 final size:37
Alignment explanation
Indices: 20470076--20470166 Score: 146
Period size: 37 Copynumber: 2.5 Consensus size: 37
20470066 ACGTGTGGAG
* *
20470076 ACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATG
1 ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
*
20470113 ACTACGTGTGGAGATTTTGTCTGGGTAAGACCCGATA
1 ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
*
20470150 ACTTCGTGTGGAGATTT
1 ACTACGTGTGGAGATTT
20470167 CATCTGAGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (37 bp):
ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
Found at i:20474582 original size:39 final size:40
Alignment explanation
Indices: 20474338--20474600 Score: 273
Period size: 40 Copynumber: 6.6 Consensus size: 40
20474328 TTGAATGCTG
* * * * * *
20474338 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * *
20474378 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
20474417 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
20474458 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
20474498 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
20474538 TCCGGGTTATGTCCCAAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
20474577 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
20474601 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 22, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
39 36 0.18
40 149 0.76
41 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:20474620 original size:79 final size:80
Alignment explanation
Indices: 20474394--20474635 Score: 206
Period size: 80 Copynumber: 3.0 Consensus size: 80
20474384 CTAAGATCCG
* * * * * * * **
20474394 AAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAA
1 AAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAA
*
20474457 ATCCGGGTTAAGTCCCG
64 ATCCGGGTTAAGTCCCA
* * * ** * *
20474474 AAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 AAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAAT
*
20474539 CCGGGTTATGTCCCA
66 CCGGGTTAAGTCCCA
* * * *
20474554 AAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
1 AAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAA
* *
20474617 TCC-GGTTAAATCCCG
65 TCCGGGTTAAGTCCCA
20474632 AAGG
1 AAGG
20474636 TACGTGATTT
Statistics
Matches: 136, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
78 14 0.10
79 46 0.34
80 73 0.54
81 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
AAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAAT
CCGGGTTAAGTCCCA
Found at i:20481287 original size:40 final size:39
Alignment explanation
Indices: 20481256--20481465 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
20481246 GGACTAAGAT
* *
20481256 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
20481296 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
20481336 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
20481376 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
20481416 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
20481455 CCGAAGGCATT
1 CCGAAGGCATT
20481466 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:20481419 original size:120 final size:120
Alignment explanation
Indices: 20481203--20481465 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
20481193 TTGAATGCTG
* *
20481203 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
20481267 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
20481323 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
20481386 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
20481442 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
20481466 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:20481485 original size:79 final size:80
Alignment explanation
Indices: 20481204--20481500 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
20481194 TGAATGCTGT
* ** * * * **
20481204 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
20481267 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
20481284 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
20481348 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
20481364 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
20481428 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
20481443 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
20481501 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:20489719 original size:18 final size:18
Alignment explanation
Indices: 20489696--20489736 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
20489686 CCACTTTCTA
*
20489696 ATCATCCCTCATTCACTC
1 ATCATCCCTCACTCACTC
*
20489714 ATCATCCCTCACTCATTC
1 ATCATCCCTCACTCACTC
20489732 ATCAT
1 ATCAT
20489737 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (18 bp):
ATCATCCCTCACTCACTC
Found at i:20500618 original size:18 final size:18
Alignment explanation
Indices: 20500595--20500635 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
20500585 CATTTTTCTA
*
20500595 ATCATCCCTCATTCACTC
1 ATCATCCCTCACTCACTC
*
20500613 ATCATCCCTCACTCATTC
1 ATCATCCCTCACTCACTC
20500631 ATCAT
1 ATCAT
20500636 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (18 bp):
ATCATCCCTCACTCACTC
Found at i:20505434 original size:40 final size:40
Alignment explanation
Indices: 20505327--20505526 Score: 246
Period size: 40 Copynumber: 5.0 Consensus size: 40
20505317 CGGATGATAA
* * * *
20505327 CCGGGCTAAGTCCCGGAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
*
20505367 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
20505406 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
20505446 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
20505486 CCGGGCTATGTTCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
20505526 C
1 C
20505527 TGGTTGAATT
Statistics
Matches: 141, Mismatches: 14, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
39 33 0.23
40 108 0.77
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:20508214 original size:17 final size:17
Alignment explanation
Indices: 20508192--20508229 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
20508182 ATTTGGCCTT
20508192 TGTGGG-CCACATGGGC
1 TGTGGGTCCACATGGGC
*
20508208 GTGTGGGTCTACATGGGC
1 -TGTGGGTCCACATGGGC
20508226 TGTG
1 TGTG
20508230 TTGTGGGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.11, C:0.18, G:0.45, T:0.26
Consensus pattern (17 bp):
TGTGGGTCCACATGGGC
Found at i:20512545 original size:28 final size:28
Alignment explanation
Indices: 20512513--20512582 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
20512503 AATGAGATTG
*
20512513 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
20512541 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
20512569 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20512583 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:20520415 original size:28 final size:28
Alignment explanation
Indices: 20520383--20520452 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
20520373 AATGAGATTG
*
20520383 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
20520411 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
*
20520439 GCACTAAGTTTGCG
1 GCACTAAGTGTGCG
20520453 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:20528330 original size:39 final size:40
Alignment explanation
Indices: 20528285--20528454 Score: 220
Period size: 39 Copynumber: 4.3 Consensus size: 40
20528275 GCTCCTCGTT
* * * *
20528285 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
20528325 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
* * *
20528364 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
* * * *
20528404 CAAAGGCCTTCGGG-CTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
20528442 CAAATGCCTTCGG
1 CAAATGCCTTCGG
20528455 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 21 0.18
39 49 0.41
40 49 0.41
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
Found at i:20528385 original size:40 final size:39
Alignment explanation
Indices: 20528287--20528507 Score: 214
Period size: 40 Copynumber: 5.6 Consensus size: 39
20528277 TCCTCGTTCA
* * * * *
20528287 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
20528326 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
20528365 GAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
20528405 AAAGGCCTTCGGG-CTTAACCCGGATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
** * * * *
20528443 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
20528484 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
20528508 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
37 2 0.01
38 19 0.12
39 60 0.38
40 68 0.43
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:20528388 original size:79 final size:78
Alignment explanation
Indices: 20528285--20528454 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 78
20528275 GCTCCTCGTT
* * * *
20528285 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAAAGGCCTTCGGG-CATAACCCGG
20528349 ATTTAATAACTCGCA
65 ATTT-ATAACTCGCA
* * * * *
20528364 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTCGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAAAGGCCTTCGGGCATAACCCGGA
* *
20528429 TTTGTATCTCGCA
66 TTTATAACTCGCA
20528442 CAAATGCCTTCGG
1 CAAATGCCTTCGG
20528455 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 20 0.26
79 47 0.60
80 11 0.14
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAAAGGCCTTCGGGCATAACCCGGA
TTTATAACTCGCA
Found at i:20528516 original size:41 final size:41
Alignment explanation
Indices: 20528439--20528516 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
20528429 TTTGTATCTC
* * *
20528439 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
20528480 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
20528517 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:20536323 original size:40 final size:40
Alignment explanation
Indices: 20536225--20536394 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
20536215 TCCTCGTTCA
* * * * *
20536225 AATGCCTTTGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
20536264 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
20536304 AATGCCTTCGGGACTTAACCCGGATTTAATAACTTGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * * *
20536344 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCACACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
20536384 AAGGCCTTCGG
1 AATGCCTTCGG
20536395 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 33 0.29
40 82 0.71
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:20536367 original size:80 final size:79
Alignment explanation
Indices: 20536223--20536447 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
20536213 GCTCCTCGTT
* * * * ** *
20536223 CAAATGCCTTTGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCACAATGCCTTCGGGACTTAACCCGGA
*
20536288 TTTAACAACTCGCA
66 TTTAACAACTCACA
* *
20536302 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTTGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCAC-AATGCCTTCGGGACTTAACCCGG
** *
20536367 ATTTAGTATCTCACA
65 ATTTAACAACTCACA
* * * * * * *
20536382 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAACTT-GCACAATGCCTTCGGGACTTAACCCG
20536446 GA
64 GA
20536448 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 36 0.30
80 81 0.67
81 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCACA
Found at i:20547609 original size:21 final size:21
Alignment explanation
Indices: 20547566--20547623 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
20547556 CCAATCTTTA
* * *
20547566 AACCCTGAACACTAAA-CTAT
1 AACCATGAACCCTAAACCCAT
*
20547586 AA-CATGTAACCTTAAACCCAT
1 AACCATG-AACCCTAAACCCAT
20547607 AACCATGAACCCTAAAC
1 AACCATGAACCCTAAAC
20547624 ATTAAATCCT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
19 3 0.10
20 9 0.30
21 14 0.47
22 4 0.13
ACGTcount: A:0.45, C:0.31, G:0.05, T:0.19
Consensus pattern (21 bp):
AACCATGAACCCTAAACCCAT
Found at i:20547658 original size:28 final size:27
Alignment explanation
Indices: 20547607--20547665 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
20547597 TTAAACCCAT
*
20547607 AACCATGAACCCTAAACATTAAATCCTA
1 AACCATGAACCCTAAACATCAAAT-CTA
*
20547635 AACCATGAACCTTAAATC-TCAAATCTA
1 AACCATGAACCCTAAA-CATCAAATCTA
20547662 AACC
1 AACC
20547666 TTAAACCTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 7 0.25
28 20 0.71
29 1 0.04
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.22
Consensus pattern (27 bp):
AACCATGAACCCTAAACATCAAATCTA
Found at i:20547910 original size:17 final size:18
Alignment explanation
Indices: 20547888--20547921 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20547878 TTGTTTATAA
20547888 TTTAAA-AAATTAATTAT
1 TTTAAATAAATTAATTAT
*
20547905 TTTAAATAATTTAATTA
1 TTTAAATAAATTAATTA
20547922 AAGTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAATAAATTAATTAT
Found at i:20548194 original size:7 final size:7
Alignment explanation
Indices: 20548182--20548214 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
20548172 ATAGTAGTAC
20548182 ATTATAT
1 ATTATAT
20548189 ATTATAT
1 ATTATAT
*
20548196 ATTAAAT
1 ATTATAT
20548203 ATTAT-T
1 ATTATAT
20548209 ATTATA
1 ATTATA
20548215 CTAATAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTATAT
Found at i:20548402 original size:27 final size:28
Alignment explanation
Indices: 20548372--20548447 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 28
20548362 TATTATATCT
*
20548372 TTTATTATAATCATATTATTA-TAATAG
1 TTTATTATAATAATATTATTAGTAATAG
* * *
20548399 TTTA-TATATTAAAATTTTTAGTAATAG
1 TTTATTATAATAATATTATTAGTAATAG
20548426 TTTATGT-TATATAATATTATTA
1 TTTAT-TATA-ATAATATTATTA
20548448 ATGTCGTAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
26 12 0.32
27 14 0.37
28 2 0.05
29 10 0.26
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (28 bp):
TTTATTATAATAATATTATTAGTAATAG
Found at i:20556259 original size:40 final size:40
Alignment explanation
Indices: 20556204--20556427 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
20556194 TATTCGGATG
20556204 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
20556244 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
20556287 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * **
20556326 ATTTCCGGGCTAAGACCCGAAGTCATGTGTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
20556366 ATATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
20556406 ATATCC-GGATAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
20556428 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
39 32 0.21
40 87 0.56
41 1 0.01
42 16 0.10
43 20 0.13
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:20556345 original size:82 final size:80
Alignment explanation
Indices: 20556204--20556395 Score: 260
Period size: 82 Copynumber: 2.4 Consensus size: 80
20556194 TATTCGGATG
* *
20556204 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGAGCTAAGACCCGAAGGCA
*
20556269 TTTGTGCGAGTAGTTGCT
66 --TGTGCGAG-AGTTACT
* * * *
20556287 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGTCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGAGCTAAGACCCGAAGGCA
* *
20556351 TGTGTGTGAGTTACT
66 TGTGCGAGAGTTACT
*
20556366 ATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT
20556396 ACGAGTTGCG
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
79 20 0.20
80 20 0.20
82 43 0.44
83 15 0.15
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGAGCTAAGACCCGAAGGCA
TGTGCGAGAGTTACT
Found at i:20561156 original size:21 final size:23
Alignment explanation
Indices: 20561113--20561156 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
20561103 TGTTAGTAGC
20561113 AGAATTAAAGGCCAAACCATTGT
1 AGAATTAAAGGCCAAACCATTGT
20561136 AGAA-TAAAGGCCAAA-CATTGT
1 AGAATTAAAGGCCAAACCATTGT
20561157 TGATTCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.29
22 11 0.52
23 4 0.19
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20
Consensus pattern (23 bp):
AGAATTAAAGGCCAAACCATTGT
Found at i:20564698 original size:40 final size:40
Alignment explanation
Indices: 20564643--20564867 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
20564633 TATTCGGATG
20564643 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
20564683 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
20564726 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
20564766 ATTTCCGGGCTAAGACCCTAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * * *
20564806 ATATCCGAGTTAAGTCCCAAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
20564846 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
20564868 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 108 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:20564789 original size:83 final size:80
Alignment explanation
Indices: 20564647--20564867 Score: 259
Period size: 83 Copynumber: 2.7 Consensus size: 80
20564637 CGGATGATAT
* * *
20564647 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
20564712 TGCGAGTAGTTTCTATAC
66 TGC--G-AGTTACTATAC
* * *
20564730 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCTAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
20564795 TGCGAGTTACTATAT
66 TGCGAGTTACTATAC
* * * * *
20564810 CCGAGTTAAGTCCCAAAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAA-ATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGA-CCCGAAGG
20564868 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 13 0.11
80 42 0.35
81 3 0.02
83 62 0.51
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TGCGAGTTACTATAC
Found at i:20573976 original size:27 final size:26
Alignment explanation
Indices: 20573932--20573983 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
20573922 CTCGTTGCAA
*
20573932 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
20573959 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
20573984 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:20579209 original size:15 final size:15
Alignment explanation
Indices: 20579177--20579205 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
20579167 ATTTTTTGTG
20579177 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
20579192 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
20579206 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:20580448 original size:56 final size:56
Alignment explanation
Indices: 20580350--20580456 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
20580340 GACCATGGCA
* **
20580350 TCGATATATGTGTGCGATTAAGACCATGTTTTATACGTTGGCATCGATATGCGACT
1 TCGATATATGTGTGCGAGTAAGACCATGTTGGATACGTTGGCATCGATATGCGACT
*
20580406 TCGATATATGTGTGCGAGTAAGACCCTGTATGGGATA-G-TGGCATCGATATG
1 TCGATATATGTGTGCGAGTAAGACCATGT-T-GGATACGTTGGCATCGATATG
20580457 TGATTACATG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
56 40 0.89
57 2 0.04
58 3 0.07
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCATGTTGGATACGTTGGCATCGATATGCGACT
Found at i:20583838 original size:49 final size:49
Alignment explanation
Indices: 20583735--20584054 Score: 198
Period size: 49 Copynumber: 6.7 Consensus size: 49
20583725 AGGTACGATA
* * * * * * *
20583735 CCGATGCCATGTTCCAAACATGGTCTTACATTGGC-T-CACACATCTAAG
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTTCCATACATCGAGG
* * *
20583783 TCGATGCCATGTCCCAGATAGGTCTTACACTAACTTCCATACATCGAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATACATCGAGG
* * * * **
20583832 CCGATGCCATGTCCCAGACAGGTCATACACTGGGTCCCATTTATCG-GTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATACATCGAG-G
** * * *
20583881 TTGATGCCATGTCCCAGACAGTTCTTACACTGGCTTGCATATC-TCGAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATA-CATCGAGG
* * * * *
20583930 CCGATG-CATGTCCCAGACATGTCTTACACTAGC-T-CTTGTC-TCAATG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCAT-ACATCGAGG
* * * * *
20583976 CCGATG-CATGTCCTAGACATGTTTTACACTGGC-TCTCATA-AT-GTGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTC-CATACATCGAGG
* * *
20584022 TCGATG-CATGTCCAAGACATGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGC
20584055 ACACATATCA
Statistics
Matches: 214, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
46 68 0.32
47 13 0.06
48 44 0.21
49 88 0.41
50 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATACATCGAGG
Found at i:20583996 original size:46 final size:45
Alignment explanation
Indices: 20583928--20584054 Score: 143
Period size: 46 Copynumber: 2.8 Consensus size: 45
20583918 CATATCTCGA
*
20583928 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTC-TCAA-T
1 GGCCGATGCATGTCCAAGACATGTCTTACACTAGCTC---TCAT-AAGT
* * *
20583975 -GCCGATGCATGTCCTAGACATGTTTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCAAGACATGTCTTACACTAGCTCTCATAA-GT
*
20584020 GGTCGATGCATGTCCAAGACATGTCTTACACTAGC
1 GGCCGATGCATGTCCAAGACATGTCTTACACTAGC
20584055 ACACATATCA
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 4 0.06
44 1 0.01
45 1 0.01
46 63 0.91
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
GGCCGATGCATGTCCAAGACATGTCTTACACTAGCTCTCATAAGT
Found at i:20584047 original size:92 final size:95
Alignment explanation
Indices: 20583784--20584054 Score: 257
Period size: 98 Copynumber: 2.9 Consensus size: 95
20583774 ACATCTAAGT
* * ** * * *
20583784 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTCCATACATCGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACAGTTCTTACACTGGCTTGCATATATCGAGGCCGATG-CATGTCCAAG
* * * * * ** *
20583849 ACAGGTCATACACTGGGTCCCATT-TATCGGTGT
65 ACATGTCTTACACT-AG-CTC-TTGTCTCAATGC
* * *
20583882 TGATGCCATGTCCCAGACAGTTCTTACACTGGCTTGCATATCTCGAGGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACAGTTCTTACACTGGCTTGCATATATCGAGGCCGATGCATGTCCAAGA
20583947 CATGTCTTACACTAGCTCTTGTCTCAATGC
66 CATGTCTTACACTAGCTCTTGTCTCAATGC
* * *
20583977 CGATG-CATGTCCTAGACATGTT-TTACACTGGCTCT-CATA-AT-GTGGTCGATGCATGTCCAA
1 CGATGCCATGTCCCAGACA-GTTCTTACACTGGCT-TGCATATATCGAGGCCGATGCATGTCCAA
20584037 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
20584055 ACACATATCA
Statistics
Matches: 148, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
92 34 0.23
93 1 0.01
94 29 0.20
95 15 0.10
96 1 0.01
97 22 0.15
98 46 0.31
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACAGTTCTTACACTGGCTTGCATATATCGAGGCCGATGCATGTCCAAGA
CATGTCTTACACTAGCTCTTGTCTCAATGC
Found at i:20585503 original size:48 final size:48
Alignment explanation
Indices: 20585432--20585591 Score: 178
Period size: 48 Copynumber: 3.3 Consensus size: 48
20585422 CGGGCTATTA
* * *
20585432 AAGACTATGTCTGCGACATGGCATCGGCATTGATATGTGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
* * *
20585480 AAGACCATGTTTGGGACATGGCATCGGGGTTGATATGTGTGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
* * * * * **
20585528 AAGACCATATCTGGGATATGGCTTCAGCGTTGGTATGTGATTTCA-TGT
1 AAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGA-GCCAGTGT
*
20585576 AAGACCATATCTGGGA
1 AAGACCATGTCTGGGA
20585592 TATATCGTTG
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 93 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.29
Consensus pattern (48 bp):
AAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
Found at i:20592916 original size:48 final size:48
Alignment explanation
Indices: 20592798--20593015 Score: 213
Period size: 48 Copynumber: 4.5 Consensus size: 48
20592788 TGAGATCCCA
*** * * *
20592798 TGTAAGACCATGTCTGGGACATGGCATCAACATCCGAAATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGTGT-TGATATGTGAGCCAG
*
20592847 TGTAAGACCATGTCTGGGACATGACATCAGTGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGAGCCAG
* * * * *
20592895 TGTAAGACCATGTCTGAGACATGGCATCGGTGCTAATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGAGCCAG
* * * * * * **
20592943 TGTAAGACCATATCTAGGATATGGCATCGGTATTGGTATGTGATTTCA-
1 TGTAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGA-GCCAG
* *
20592991 TGTAAGACCATATCTGGGATATGGC
1 TGTAAGACCATGTCTGGGACATGGC
20593016 GTTGACATGC
Statistics
Matches: 143, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
48 112 0.78
49 31 0.22
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGAGCCAG
Found at i:20592995 original size:96 final size:95
Alignment explanation
Indices: 20592795--20593015 Score: 237
Period size: 96 Copynumber: 2.3 Consensus size: 95
20592785 TAATGAGATC
*
20592795 CCATGTAAGACCATGTCTGGGACATGGCATCAACATCCGAAATGAGAGCCAGTGTAAGACCATGT
1 CCATGTAAGACCATGTCTGGGACATGGCATC-ACATCCGAAATGAGAGCCAGTGTAAGACCATAT
* *
20592860 CTGGGACATGACATCAGTGTTGATATGTGAG
65 CTAGGACATGACATCAGTATTGATATGTGAG
* ** * * * *
20592891 CCAGTGTAAGACCATGTCTGAGACATGGCATC-GGTGCTAATATGTGTGCCAGTGTAAGACCATA
1 CCA-TGTAAGACCATGTCTGGGACATGGCATCACATCCGAA-ATGAGAGCCAGTGTAAGACCATA
* * * * *
20592955 TCTAGGATATGGCATCGGTATTGGTATGTGATT
64 TCTAGGACATGACATCAGTATTGATATGTGA-G
* * *
20592988 TCATGTAAGACCATATCTGGGATATGGC
1 CCATGTAAGACCATGTCTGGGACATGGC
20593016 GTTGACATGC
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
95 4 0.04
96 70 0.68
97 29 0.28
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (95 bp):
CCATGTAAGACCATGTCTGGGACATGGCATCACATCCGAAATGAGAGCCAGTGTAAGACCATATC
TAGGACATGACATCAGTATTGATATGTGAG
Found at i:20599759 original size:40 final size:40
Alignment explanation
Indices: 20599676--20599861 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
20599666 TTGAATGATG
* * * *
20599676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
20599716 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
20599756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
20599796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
20599837 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20599862 GACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:20599868 original size:40 final size:40
Alignment explanation
Indices: 20599676--20599894 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
20599666 TTGAATGATG
* * * * *
20599676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
20599716 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
20599756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
20599796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
20599837 -CCGGGCTATGTCCCGAAGGCATTTG-GACGAG-TAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTG-CGAGTTA-CTAAA
* *
20599876 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
20599895 TATGTGATTT
Statistics
Matches: 158, Mismatches: 14, Indels: 15
0.84 0.07 0.08
Matches are distributed among these distances:
39 17 0.11
40 131 0.83
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:20607702 original size:40 final size:40
Alignment explanation
Indices: 20607619--20607804 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
20607609 TTGAATGATG
* * * * *
20607619 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
20607659 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
20607699 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
20607739 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
20607780 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20607805 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:20607811 original size:80 final size:79
Alignment explanation
Indices: 20607672--20607837 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
20607662 GGACTAAGAT
* **
20607672 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
20607736 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
20607752 CCGAAGGCATTTGTGCGAGTTACTACAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
20607816 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
20607831 CCGAAGG
1 CCGAAGG
20607838 TATGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:20626908 original size:22 final size:22
Alignment explanation
Indices: 20626878--20626933 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
20626868 ACAGGACACT
* * *
20626878 ATGTTGCAACATGGGCTATCCG
1 ATGTCGCAACATGGGATATCCA
20626900 ATGTCGCAACATGGGATATCCA
1 ATGTCGCAACATGGGATATCCA
20626922 ATGTCGCAACAT
1 ATGTCGCAACAT
20626934 AGAGAACAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (22 bp):
ATGTCGCAACATGGGATATCCA
Found at i:20630023 original size:27 final size:28
Alignment explanation
Indices: 20629993--20630046 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
20629983 TTGATGAATT
* * *
20629993 TGAGTAATTTGGG-CTAAATTGTGAAAA
1 TGAGAAATTAGGGACTAAAATGTGAAAA
20630020 TGAGAAATTAGGGAACTAAAATGTGAA
1 TGAGAAATTAGGG-ACTAAAATGTGAA
20630047 TTAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
29 11 0.50
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.28
Consensus pattern (28 bp):
TGAGAAATTAGGGACTAAAATGTGAAAA
Found at i:20641861 original size:12 final size:13
Alignment explanation
Indices: 20641844--20641873 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
20641834 TACTGCAATT
20641844 TAATTTTTATT-C
1 TAATTTTTATTAC
20641856 TAATTTTTATTAC
1 TAATTTTTATTAC
20641869 TAATT
1 TAATT
20641874 CTTCTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATTTTTATTAC
Found at i:20644920 original size:55 final size:55
Alignment explanation
Indices: 20644830--20644944 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 55
20644820 CTGCCAAAAG
* ** *
20644830 AACACGGGCGTGCGACATGCCCGTGCCTTGAAACCGTTGCCAAACCTATTAAATT
1 AACACGGACGTGCGACATGCCCGTGCCAAGAAACCGTGGCCAAACCTATTAAATT
* * * * *
20644885 AACACGGACGTGCGACATGCCCGTGCCAAGCAACCGTGGTCGAACCTGTTAGATT
1 AACACGGACGTGCGACATGCCCGTGCCAAGAAACCGTGGCCAAACCTATTAAATT
20644940 AACAC
1 AACAC
20644945 AGGTGTGGGA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (55 bp):
AACACGGACGTGCGACATGCCCGTGCCAAGAAACCGTGGCCAAACCTATTAAATT
Found at i:20655572 original size:13 final size:13
Alignment explanation
Indices: 20655554--20655579 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20655544 TGCGATAAAA
20655554 CGACATGGCCGTG
1 CGACATGGCCGTG
20655567 CGACATGGCCGTG
1 CGACATGGCCGTG
20655580 GTCGAGCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
CGACATGGCCGTG
Found at i:20659329 original size:16 final size:17
Alignment explanation
Indices: 20659308--20659339 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20659298 ACTATGGTAT
20659308 ATGAAAT-ATTGATATA
1 ATGAAATAATTGATATA
20659324 ATGAAATAATTGATAT
1 ATGAAATAATTGATAT
20659340 GTGTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
ATGAAATAATTGATATA
Found at i:20661790 original size:30 final size:30
Alignment explanation
Indices: 20661754--20661814 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
20661744 ATCCCGAGCC
20661754 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
20661784 TAGGGGCAAAATTGTAATTTTGCAGAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
20661814 T
1 T
20661815 GATTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:20682988 original size:48 final size:48
Alignment explanation
Indices: 20682906--20683190 Score: 331
Period size: 48 Copynumber: 5.9 Consensus size: 48
20682896 ACTAGGGTTA
* * * *
20682906 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
* * * * * *
20682954 TGTGAGAGCTAGTGTAAGACCCTATCTGGGACATGGCATCGACACCGAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-T
* * *
20683003 ATATGAGAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCCTCGA
1 -TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
* * * * **
20683052 TATGTG-GCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
20683099 TATGTAG-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAT
1 TATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-T
*
20683148 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACTTGGCATCGG
1 -TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
20683191 TATTTTACCC
Statistics
Matches: 196, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
47 37 0.19
48 78 0.40
49 4 0.02
50 77 0.39
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
Found at i:20683176 original size:145 final size:146
Alignment explanation
Indices: 20682905--20683190 Score: 459
Period size: 145 Copynumber: 2.0 Consensus size: 146
20682895 TACTAGGGTT
* * * *
20682905 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTGTGAGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGAGAGCCAGTGTA
* *
20682970 AGACCCTATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACTATGTCTGGGA
66 AGACCATATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCATGTCTGGGA
20683035 CATGGCATCGGCCTCG
131 CATGGCATCGGCCTCG
20683051 ATATGTG-GCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGTAG-GCCAGTGT
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATG-AGAGCCAGTGT
* * *
20683114 AAGACCATGTCTGGGACATGGCATCGGCATCGATATATGAGAGCCAGTGTAAGACCATGTCTGGG
65 AAGACCATATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCATGTCTGGG
*
20683179 ACTTGGCATCGG
130 ACATGGCATCGG
20683191 TATTTTACCC
Statistics
Matches: 129, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
145 120 0.93
146 9 0.07
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (146 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGAGAGCCAGTGTA
AGACCATATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCCTCG
Found at i:20684175 original size:19 final size:19
Alignment explanation
Indices: 20684151--20684188 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
20684141 GAGTTTCGAG
20684151 AAACTAAAGGCATTGTTGA
1 AAACTAAAGGCATTGTTGA
20684170 AAACTAAAGGCATTGTTGA
1 AAACTAAAGGCATTGTTGA
20684189 CTGAAGCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (19 bp):
AAACTAAAGGCATTGTTGA
Found at i:20685462 original size:37 final size:37
Alignment explanation
Indices: 20685421--20685523 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
20685411 CGAATAGTCC
*
20685421 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
20685458 CCACACGTAGTCATCGGTTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
20685495 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
20685524 ATATATTCCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:20685722 original size:48 final size:48
Alignment explanation
Indices: 20685664--20686048 Score: 664
Period size: 48 Copynumber: 8.0 Consensus size: 48
20685654 ATATACACAC
*
20685664 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
20685712 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
20685760 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAAAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
20685808 ATCTCATACATATTTCATACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
20685856 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
20685904 ATCTCATATAAATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
20685952 ATCT-ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
20685999 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
20686047 AT
1 AT
20686049 ATTTATCTTG
Statistics
Matches: 319, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 45 0.14
48 274 0.86
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:20689613 original size:28 final size:28
Alignment explanation
Indices: 20689582--20689738 Score: 138
Period size: 28 Copynumber: 5.5 Consensus size: 28
20689572 CTGACTGATT
* *
20689582 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCAATTAAAGAAC
* *
20689610 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCAATTA-AAGAAC
20689639 TCGCACACATAGTGCTCAATTGAAA-AAC
1 TCGCACACATAGTGCTCAATT-AAAGAAC
* ** *
20689667 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCAATTAAAGAAC
* ** *
20689696 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCAATTAAAGAAC
* *
20689724 TTGCACACACAGTGC
1 TCGCACACATAGTGC
20689739 CTCATAACTC
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
28 58 0.56
29 45 0.43
30 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCAATTAAAGAAC
Found at i:20689642 original size:29 final size:29
Alignment explanation
Indices: 20689582--20689710 Score: 131
Period size: 29 Copynumber: 4.5 Consensus size: 29
20689572 CTGACTGATT
* * *
20689582 TCGCACACATAGCG-CTCGATTA-AAGAAC
1 TCGCACACATAGTGCCTCAATTACAA-ATC
*
20689610 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
20689639 TCGCACACATAGTG-CTCAATTGA-AAAAC
1 TCGCACACATAGTGCCTCAATT-ACAAATC
* **
20689667 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
20689696 TGGCACACATAGTGC
1 TCGCACACATAGTGC
20689711 TCGGTTGAAG
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
28 38 0.45
29 46 0.54
30 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACAAATC
Found at i:20689649 original size:57 final size:57
Alignment explanation
Indices: 20689582--20689742 Score: 216
Period size: 57 Copynumber: 2.8 Consensus size: 57
20689572 CTGACTGATT
* *
20689582 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
20689639 TCGCACACATAGTGCTCAATTGAAA-AACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATT-AAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
20689696 TGGCACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCA
20689743 TAACTCCAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
56 2 0.02
57 86 0.95
58 3 0.03
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:20689815 original size:40 final size:40
Alignment explanation
Indices: 20689770--20690101 Score: 565
Period size: 40 Copynumber: 8.3 Consensus size: 40
20689760 CCTTCGAGGT
* *
20689770 TTAGCCCGGATATATCACTAGCACGAATGCTTTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * * *
20689810 TTAGCCCGGATACATTAATAGCATGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
20689850 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
20689890 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
20689930 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
20689970 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
20690010 TTAGCCCGGATTCATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
20690050 TTAGCCCGGATACATCACTAGCACGAATTCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
20690090 TTAGCCCGGATA
1 TTAGCCCGGATA
20690102 TATATAACTC
Statistics
Matches: 276, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 276 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:20691443 original size:37 final size:37
Alignment explanation
Indices: 20691390--20691492 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
20691380 CGAATAGTCC
*
20691390 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
20691427 CCACACGTAGTCATCGGTTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
20691464 CCACACGTAGCCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
20691493 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:20691691 original size:48 final size:48
Alignment explanation
Indices: 20691633--20691958 Score: 568
Period size: 48 Copynumber: 6.9 Consensus size: 48
20691623 ATATACACAC
*
20691633 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
20691681 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
20691729 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAAATATAAAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
20691777 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
20691825 A---CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
20691870 ATCTCATATAAATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
20691918 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
20691959 CACATATATA
Statistics
Matches: 262, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 45 0.17
48 217 0.83
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:20691894 original size:141 final size:142
Alignment explanation
Indices: 20691633--20691958 Score: 564
Period size: 141 Copynumber: 2.3 Consensus size: 142
20691623 ATATACACAC
*
20691633 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA--TCATACATATTTCA
* *
20691698 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
64 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACAAATTTCACACTAGCCATTCGGCTT
20691763 TACCAAATATAAAT
129 TACCAAATATAAAT
20691777 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA-CATACATATTTCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCATACATATTTCACA
* *
20691841 CTAGCCATTCGGCTTTACCACATATACATATCTCATATAAATTTCACATTAGCCATTCGGCTTTA
66 CTAGCCATTCGGCTTTACCACATATACATATCTCATACAAATTTCACACTAGCCATTCGGCTTTA
* *
20691906 CCACATATACAT
131 CCAAATATAAAT
20691918 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
20691959 CACATATATA
Statistics
Matches: 175, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
141 127 0.73
144 48 0.27
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.33
Consensus pattern (142 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCATACATATTTCACA
CTAGCCATTCGGCTTTACCACATATACATATCTCATACAAATTTCACACTAGCCATTCGGCTTTA
CCAAATATAAAT
Found at i:20697487 original size:48 final size:49
Alignment explanation
Indices: 20697410--20697643 Score: 278
Period size: 48 Copynumber: 4.8 Consensus size: 49
20697400 GTTATATGTT
* *
20697410 AGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TGTAAG
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGT-AG
* * * * ** *
20697458 AGCTAGTGTAAGACCCTATTAGGGACATGGCATCGGCACCGATATATGAG
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGT-AG
* * *
20697508 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTA-
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTAG
* * *
20697556 AGCCAGTGTAACACCATGTTTGGAACATGGCATCGGCATTGTTATGTAG
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTAG
*
20697605 -GCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATT
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATT
20697644 TTACCCTTTT
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
48 111 0.71
49 2 0.01
50 43 0.28
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTAG
Done.