Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 69 of 373
Found at i:21008437 original size:28 final size:28
Alignment explanation
Indices: 21008397--21008526 Score: 224
Period size: 28 Copynumber: 4.6 Consensus size: 28
21008387 CGCATACTTG
*
21008397 ATGTCTCGCACACTAAGTGCCACAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
*
21008425 ATGTCTCGCACACTAATTGCCATAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
21008453 ATGTCTCGCACACTAAGTGCCATAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
* *
21008481 AAGTCTCGTACACTAAGTGCCATAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
21008509 ATGTCTCGCACACTAAGT
1 ATGTCTCGCACACTAAGT
21008527 ACTCTACATA
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 95 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (28 bp):
ATGTCTCGCACACTAAGTGCCATAATCA
Found at i:21012103 original size:46 final size:46
Alignment explanation
Indices: 21011928--21012103 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
21011918 TGTAACCCGC
* * *
21011928 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
21011974 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCG--GAC-A-TTCGCAT
* *
21012024 CTC-T---CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
21012067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
21012104 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 2 0.02
46 62 0.58
47 24 0.22
49 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:21019644 original size:49 final size:49
Alignment explanation
Indices: 21019584--21019822 Score: 253
Period size: 49 Copynumber: 4.8 Consensus size: 49
21019574 AGGCTATCTA
* *
21019584 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
* * * ** **
21019633 GTACACGTAGTAGTCTACACTTAGTACTACACACGTGACCTAACCATCTA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCG
* * ** * *
21019683 ATACACGTAGTAGCCTACACTTAGTACTACACACATGATCGAAGTTATCGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCG
* * * *
21019734 GTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
** *
21019783 GTACACGTAGTAGCCTGTGCTTAGTACTACACACGTGACC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
21019823 TCACAATAGA
Statistics
Matches: 153, Mismatches: 34, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 74 0.48
50 45 0.29
51 34 0.22
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
Found at i:21019762 original size:101 final size:98
Alignment explanation
Indices: 21019579--21019816 Score: 262
Period size: 100 Copynumber: 2.4 Consensus size: 98
21019569 AGACAAGGCT
* ** *
21019579 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACATAGT
*
21019644 AGTCTACACTTAGTACTACACACGTGACCTAACC
66 AGTCTACACTTAGTACTACACACGCGACC-AACC
* * * * * *
21019678 ATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCGAAGTTATCGGGTACGCATA
1 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCCGGTACACATA
* * **
21019743 GTAG-CATGCACTTAGTACTACACATGCGACCAATT
64 GTAGTC-TACACTTAGTACTACACACGCGACCAACC
** **
21019778 ATCCGGTACACGTAGTAGCCTGTGCTTAGTACTACACAC
1 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACAC
21019817 GTGACCTCAC
Statistics
Matches: 115, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
99 37 0.32
100 39 0.34
101 39 0.34
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACATAGT
AGTCTACACTTAGTACTACACACGCGACCAACC
Found at i:21034366 original size:27 final size:27
Alignment explanation
Indices: 21034333--21034562 Score: 306
Period size: 27 Copynumber: 8.6 Consensus size: 27
21034323 TAAATTGTGC
21034333 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21034360 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
21034388 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21034415 AG--CTTA--GTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21034438 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
*
21034466 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
21034493 AGCACTAAGTGTGAGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
21034521 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21034548 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21034563 GACTTAATAT
Statistics
Matches: 183, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
23 19 0.10
25 6 0.03
27 82 0.45
28 76 0.42
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:21034397 original size:55 final size:55
Alignment explanation
Indices: 21034333--21034562 Score: 328
Period size: 55 Copynumber: 4.3 Consensus size: 55
21034323 TAAATTGTGC
21034333 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
* *
21034388 AGCACTAAGTGTGCGA-ATTGACTATGTAG--CTTA--GTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
21034438 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * * *
21034493 AGCACTAAGTGTGAGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
21034548 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21034563 GACTTAATAT
Statistics
Matches: 159, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
50 26 0.16
51 18 0.11
53 6 0.04
55 109 0.69
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:21034454 original size:78 final size:79
Alignment explanation
Indices: 21034343--21034562 Score: 327
Period size: 78 Copynumber: 2.8 Consensus size: 79
21034333 AGCACTAAGT
21034343 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
1 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
*
21034408 ACTATGTAG-CTTA
66 ACTATGTAGACTAA
*
21034421 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTG
1 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
21034486 ACTATGTAGCACTAA
66 ACTATGTAG-ACTAA
* * * * *
21034501 GTGTGAGAGTTTGATTATGTAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 GTGCGA-A--TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
21034563 GACTTAATAT
Statistics
Matches: 130, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
78 73 0.56
80 8 0.06
81 1 0.01
82 22 0.17
83 26 0.20
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (79 bp):
GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
ACTATGTAGACTAA
Found at i:21042432 original size:27 final size:27
Alignment explanation
Indices: 21042399--21042628 Score: 297
Period size: 27 Copynumber: 8.6 Consensus size: 27
21042389 TAAATTGTGC
21042399 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21042426 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
21042454 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21042481 AG--CTTA--GTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21042504 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
*
21042532 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
21042559 AGCATTAAGTGTGAGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
21042587 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
21042614 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21042629 GACTTAATAT
Statistics
Matches: 181, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.10
25 6 0.03
27 81 0.45
28 75 0.41
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:21042463 original size:55 final size:55
Alignment explanation
Indices: 21042399--21042628 Score: 319
Period size: 55 Copynumber: 4.3 Consensus size: 55
21042389 TAAATTGTGC
21042399 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
* *
21042454 AGCACTAAGTGTGCGA-ATTGACTATGTAG--CTTA--GTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
21042504 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * * * *
21042559 AGCATTAAGTGTGAGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
21042614 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21042629 GACTTAATAT
Statistics
Matches: 157, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
50 26 0.17
51 18 0.11
53 6 0.04
55 107 0.68
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:21042520 original size:78 final size:80
Alignment explanation
Indices: 21042409--21042628 Score: 338
Period size: 78 Copynumber: 2.8 Consensus size: 80
21042399 AGCACTAAGT
21042409 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
1 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
21042474 ACTATGTAGC-TT-A
66 ACTATGTAGCATTAA
*
21042487 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTG
1 GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
21042552 ACTATGTAGCATTAA
66 ACTATGTAGCATTAA
* * * * *
21042567 GTGTGAGAGTTTGATTATGTAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 GTGCGA-A--TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
21042629 GACTTAATAT
Statistics
Matches: 131, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
78 74 0.56
79 2 0.02
80 6 0.05
81 1 0.01
82 22 0.17
83 26 0.20
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (80 bp):
GTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTG
ACTATGTAGCATTAA
Found at i:21048417 original size:28 final size:27
Alignment explanation
Indices: 21048386--21048491 Score: 106
Period size: 29 Copynumber: 3.7 Consensus size: 27
21048376 ACTTACATGC
21048386 ATATGGCCCACTTGGCCCAATCTCATTT
1 ATATGGCCCA-TTGGCCCAATCTCATTT
*
21048414 ATATGGCCCATCAGGCCCAAT-TCATATT
1 ATATGGCCCAT-TGGCCCAATCTCAT-TT
* *
21048442 CATATGGCCCATTAGGCCCAAATCACCTTT
1 -ATATGGCCCATT-GGCCC-AATCTCATTT
*
21048472 ATATGGCCCGTTAGGCCCAA
1 ATATGGCCCATT-GGCCCAA
21048492 ATCACCATAT
Statistics
Matches: 67, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
27 5 0.07
28 22 0.33
29 33 0.49
30 5 0.07
31 2 0.03
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (27 bp):
ATATGGCCCATTGGCCCAATCTCATTT
Found at i:21050518 original size:12 final size:12
Alignment explanation
Indices: 21050501--21050526 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21050491 ATCAGAGGCC
21050501 TCCTTCAACCGA
1 TCCTTCAACCGA
21050513 TCCTTCAACCGA
1 TCCTTCAACCGA
21050525 TC
1 TC
21050527 TCGGATCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.42, G:0.08, T:0.27
Consensus pattern (12 bp):
TCCTTCAACCGA
Found at i:21052447 original size:47 final size:47
Alignment explanation
Indices: 21052360--21052875 Score: 783
Period size: 47 Copynumber: 11.1 Consensus size: 47
21052350 CCTAGTAGGA
*
21052360 AAGGCCTAATAGCCGATGTGATGAA--T----GTGTATATGTGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
21052401 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
21052448 AAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
*
21052497 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
21052544 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
21052591 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
21052638 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
21052685 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATATGTAAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
21052732 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
21052779 AAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * * * * * *
21052826 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGAT
1 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
21052873 AAG
1 AAG
21052876 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
41 25 0.06
43 1 0.00
47 373 0.84
49 45 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
Found at i:21053050 original size:37 final size:37
Alignment explanation
Indices: 21052994--21053072 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
21052984 CCGAGCTCTA
* *
21052994 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
21053031 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21053068 AAGAC
1 AAGAC
21053073 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21055041 original size:42 final size:43
Alignment explanation
Indices: 21054936--21055080 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
21054926 TTGGTTTTCA
*
21054936 GCACTAAGTGTGCGGGCAATAAGTGTTCATGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
21054979 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
21055022 GC-CTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
21055064 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
21055081 TTGAAATGCA
Statistics
Matches: 100, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
42 42 0.42
43 58 0.58
ACGTcount: A:0.22, C:0.14, G:0.36, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:21055097 original size:29 final size:29
Alignment explanation
Indices: 21055062--21055135 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
21055052 GTTGTGAGAT
* *
21055062 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
21055091 TGGCACTAAGTGTGCAAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
21055120 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
21055136 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:21058288 original size:47 final size:47
Alignment explanation
Indices: 21058235--21058681 Score: 689
Period size: 47 Copynumber: 9.5 Consensus size: 47
21058225 ATTCAGCCAA
*
21058235 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
21058282 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
21058329 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
21058376 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
21058425 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
21058472 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
21058519 GAAAGTGTATATATGT-AGTAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGA-TAAGGCCTAATGGCCGATGTGATGAATGT
*
21058566 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * *
21058613 GAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
21058660 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
21058682 TCCCGAAGGG
Statistics
Matches: 373, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 326 0.87
48 1 0.00
49 45 0.12
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:21058856 original size:37 final size:37
Alignment explanation
Indices: 21058800--21058878 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
21058790 CCGAGCTCTA
* *
21058800 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
21058837 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21058874 AAGAC
1 AAGAC
21058879 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21062586 original size:16 final size:16
Alignment explanation
Indices: 21062565--21062603 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
21062555 CCAAACTTTT
*
21062565 GGCTTTTCGGTATTTC
1 GGCTTTTCGGCATTTC
21062581 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
21062597 GGCTTTT
1 GGCTTTT
21062604 ACCAATCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.21, G:0.26, T:0.49
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:21067583 original size:40 final size:40
Alignment explanation
Indices: 21067532--21067926 Score: 567
Period size: 40 Copynumber: 9.8 Consensus size: 40
21067522 ATTTGAATTT
* * * * *
21067532 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-TA
* *
21067572 TATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
21067612 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
21067652 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATA
*
21067694 TATTCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
21067734 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
21067774 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATA
* * *
21067816 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
21067856 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** * * *
21067896 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGC
21067927 TTGTGGTAAT
Statistics
Matches: 329, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
40 250 0.76
41 3 0.01
42 76 0.23
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:21067747 original size:122 final size:122
Alignment explanation
Indices: 21067532--21067926 Score: 623
Period size: 122 Copynumber: 3.3 Consensus size: 122
21067522 ATTTGAATTT
* * *
21067532 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAT-TTTATTCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
21067595 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
21067652 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATTCGGGCTAAGACCCGCAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
21067717 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
21067774 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
* * * * *
21067839 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** *
21067896 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
21067927 TTGTGGTAAT
Statistics
Matches: 255, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
120 30 0.12
121 4 0.02
122 221 0.87
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:21067803 original size:162 final size:161
Alignment explanation
Indices: 21067532--21067926 Score: 587
Period size: 162 Copynumber: 2.4 Consensus size: 161
21067522 ATTTGAATTT
* * * * *
21067532 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATTCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
21067596 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG-ATATATCCGGG
65 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGAATATATCCGGG
* * *
21067660 CTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
130 CTAAGACCCGAAGGCAATTGTGCAAGTTG--ATA
* * *
21067694 TATTCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21067759 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGG
66 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-ATATATCCGGG
21067824 CTAAGACCCGAAGGCAATTGTGCAAGTTGATA
130 CTAAGACCCGAAGGCAATTGTGCAAGTTGATA
* * ** * *
21067856 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21067921 TTGTGC
66 TTGTGC
21067927 TTGTGGTAAT
Statistics
Matches: 210, Mismatches: 20, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
162 170 0.81
163 3 0.01
164 37 0.18
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (161 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGAATATATCCGGGC
TAAGACCCGAAGGCAATTGTGCAAGTTGATA
Found at i:21075884 original size:40 final size:40
Alignment explanation
Indices: 21075833--21076227 Score: 549
Period size: 40 Copynumber: 9.8 Consensus size: 40
21075823 ATTTGAATTT
* * * *
21075833 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
* *
21075873 TATTCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21075913 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21075953 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
21075995 TATTCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21076035 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21076075 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
21076117 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
21076157 TATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * *
21076197 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
21076228 TTGTGGTAAT
Statistics
Matches: 323, Mismatches: 27, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
40 245 0.76
41 3 0.01
42 75 0.23
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:21076048 original size:122 final size:122
Alignment explanation
Indices: 21075833--21076227 Score: 605
Period size: 122 Copynumber: 3.3 Consensus size: 122
21075823 ATTTGAATTT
* * * *
21075833 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAT-TTTATTCGGGCTAAGACTCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
21075896 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
21075953 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATTCGGGCTAAGACCCGTAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
21076018 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
21076075 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
* * ** * *
21076140 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** *
21076197 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
21076228 TTGTGGTAAT
Statistics
Matches: 253, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
120 30 0.12
121 4 0.02
122 219 0.87
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATTCGGGCTAAGACCCGAAGGC
ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:21076104 original size:162 final size:161
Alignment explanation
Indices: 21075833--21076227 Score: 569
Period size: 162 Copynumber: 2.4 Consensus size: 161
21075823 ATTTGAATTT
* * * * * *
21075833 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATTCGGGCTAAGACTCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
21075897 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG-ATATATCCGGG
65 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGAATATATCCGGG
* * *
21075961 CTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
130 CTAAGACCCGAAGGCAATTGTGCAAGTTG--ATA
* * *
21075995 TATTCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21076060 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGG
66 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-ATATATCCGGG
21076125 CTAAGACCCGAAGGCAATTGTGCAAGTTGATA
130 CTAAGACCCGAAGGCAATTGTGCAAGTTGATA
* * * ** * *
21076157 TATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21076222 TTGTGC
66 TTGTGC
21076228 TTGTGGTAAT
Statistics
Matches: 208, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
162 168 0.81
163 3 0.01
164 37 0.18
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (161 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGAATATATCCGGGC
TAAGACCCGAAGGCAATTGTGCAAGTTGATA
Found at i:21109328 original size:40 final size:40
Alignment explanation
Indices: 21109260--21109439 Score: 240
Period size: 40 Copynumber: 4.6 Consensus size: 40
21109250 AAACCAAGTA
* * *
21109260 CCTTCGGGATTTA--CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
21109298 CCTTCGGGACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
21109338 -CTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
21109377 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
21109417 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
21109440 CATCCGAATA
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 12 0.10
39 32 0.26
40 79 0.64
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:21109404 original size:79 final size:80
Alignment explanation
Indices: 21109289--21109436 Score: 244
Period size: 79 Copynumber: 1.9 Consensus size: 80
21109279 ATCGCAACTC
* *
21109289 GCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCACACACATG-CTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
21109353 CGGAAATAGTCACTA
66 CGGAAATAGTCACTA
* **
21109368 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
21109433 CGGA
66 CGGA
21109437 TATCATCCGA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
79 45 0.71
80 18 0.29
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
CGGAAATAGTCACTA
Found at i:21115691 original size:11 final size:11
Alignment explanation
Indices: 21115675--21115699 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21115665 AACTCATTGA
21115675 GTAGGAATTAT
1 GTAGGAATTAT
21115686 GTAGGAATTAT
1 GTAGGAATTAT
21115697 GTA
1 GTA
21115700 ACCTGAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (11 bp):
GTAGGAATTAT
Found at i:21115729 original size:34 final size:34
Alignment explanation
Indices: 21115629--21115735 Score: 115
Period size: 40 Copynumber: 3.0 Consensus size: 34
21115619 CTATGAATAT
21115629 TGAAATCGACATAACGAGTAGGAATTATGTAACC
1 TGAAATCGACATAACGAGTAGGAATTATGTAACC
* * * **
21115663 TGAACTCATTGAGTAGGAATTATGTAGGAATTATGTAACC
1 TGAA---ATCGA-CA-TAACGA-GTAGGAATTATGTAACC
21115703 TGAAATCGACATAACGAGTAGGAATTATGTAAC
1 TGAAATCGACATAACGAGTAGGAATTATGTAAC
21115736 GACAGAAATG
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
34 20 0.35
35 3 0.05
36 1 0.02
37 8 0.14
38 1 0.02
39 3 0.05
40 21 0.37
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.27
Consensus pattern (34 bp):
TGAAATCGACATAACGAGTAGGAATTATGTAACC
Found at i:21115874 original size:45 final size:43
Alignment explanation
Indices: 21115812--21115902 Score: 137
Period size: 45 Copynumber: 2.1 Consensus size: 43
21115802 CACTAGGAAT
*
21115812 TATGTAACCTGAACTCATTGAGTTGTTGTCTAAGTTCATGATA
1 TATGTAACCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATA
* *
21115855 TATGTAACATCTGAACTCATTGAGTTGTGGTCTGAGTTCTTGATA
1 TATGTAAC--CTGAACTCATTGAGTTGTGGTCTAAGTTCATGATA
21115900 TAT
1 TAT
21115903 TTGACACATG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 8 0.19
45 35 0.81
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (43 bp):
TATGTAACCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATA
Found at i:21130854 original size:13 final size:16
Alignment explanation
Indices: 21130817--21130856 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
21130807 TTTTAGGTTG
21130817 AAGATGATGAGAAAAT
1 AAGATGATGAGAAAAT
21130833 AAGATGATGAGAAAAT
1 AAGATGATGAGAAAAT
21130849 AAGATGAT
1 AAGATGAT
21130857 CTTTTCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.55, C:0.00, G:0.25, T:0.20
Consensus pattern (16 bp):
AAGATGATGAGAAAAT
Found at i:21138795 original size:49 final size:49
Alignment explanation
Indices: 21138740--21138983 Score: 381
Period size: 49 Copynumber: 5.1 Consensus size: 49
21138730 ATGTACAAGA
*
21138740 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
21138789 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
21138838 TATGTATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
21138887 TATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTA
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
21138934 TATGTATA--TGATAAGGCCAAATGGTCAATGTGATGGAA-GTGGAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTG
21138981 TAT
1 TAT
21138984 AACTGTGATA
Statistics
Matches: 184, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
47 79 0.43
48 3 0.02
49 102 0.55
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (49 bp):
TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:21138799 original size:27 final size:27
Alignment explanation
Indices: 21138769--21138851 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
21138759 CGAATGGCCA
21138769 ATGTGATGAATGTGAAGGTGTATGTAT
1 ATGTGATGAATGTGAAGGTGTATGTAT
* * *
21138796 ATGTGAT-AAGGCCGAA--TG---GCCA-
1 ATGTGATGAATG-TGAAGGTGTATG-TAT
21138818 ATGTGATGAATGTGAAGGTGTATGTAT
1 ATGTGATGAATGTGAAGGTGTATGTAT
21138845 ATGTGAT
1 ATGTGAT
21138852 AAGGCTGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.30, C:0.05, G:0.33, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAGGTGTATGTAT
Found at i:21138882 original size:22 final size:22
Alignment explanation
Indices: 21138809--21138882 Score: 53
Period size: 22 Copynumber: 3.1 Consensus size: 22
21138799 TGATAAGGCC
21138809 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
* *
21138831 GAAGGTGTATG-TATATGTGAT-AAGGCT
1 GAA--TG---GCCA-ATGTGATGAATG-T
21138858 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
21138880 GAA
1 GAA
21138883 AGTGTATGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 15 0.38
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 12 0.31
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.28
Consensus pattern (22 bp):
GAATGGCCAATGTGATGAATGT
Found at i:21142461 original size:42 final size:42
Alignment explanation
Indices: 21142400--21142494 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
21142390 CGGCTGTACT
**
21142400 ACATGGCCGTGGGCGAACCTGCCAAAACAACACTGGCA-TTCG
1 ACATGGCCGTGGGAAAACCTGCCAAAACAACA-TGGCAGTTCG
*
21142442 ACATGGCCGTGGGAAAACCTGCCAAAACAACATGGGAGTTCG
1 ACATGGCCGTGGGAAAACCTGCCAAAACAACATGGCAGTTCG
*
21142484 ACATGCCCGTG
1 ACATGGCCGTG
21142495 CCTCAAAACC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 4 0.08
42 44 0.92
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.15
Consensus pattern (42 bp):
ACATGGCCGTGGGAAAACCTGCCAAAACAACATGGCAGTTCG
Found at i:21151138 original size:37 final size:37
Alignment explanation
Indices: 21151079--21151261 Score: 294
Period size: 37 Copynumber: 4.9 Consensus size: 37
21151069 AGCTCAGACG
* * * *
21151079 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
21151116 AAATTTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
21151153 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
21151190 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
21151227 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
21151262 ATATATTTCC
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:21155260 original size:57 final size:58
Alignment explanation
Indices: 21155188--21155296 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
21155178 GCCCACTGAT
* *
21155188 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
21155245 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
21155297 TAATCATTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:21155540 original size:40 final size:40
Alignment explanation
Indices: 21155508--21155899 Score: 631
Period size: 40 Copynumber: 9.8 Consensus size: 40
21155498 CCAGCATGAT
* * * *
21155508 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * ** *
21155548 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
21155588 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21155628 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21155668 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
21155708 TGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21155748 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
21155788 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
21155828 TGCTCCTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
21155868 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
21155900 CTCAATTCTC
Statistics
Matches: 327, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 327 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:21157211 original size:37 final size:37
Alignment explanation
Indices: 21157153--21157334 Score: 328
Period size: 37 Copynumber: 4.9 Consensus size: 37
21157143 GCTCAGACGA
* * * *
21157153 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
21157190 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
21157227 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
21157264 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
21157301 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
21157335 ATATATTTCC
Statistics
Matches: 141, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 141 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:21157685 original size:98 final size:95
Alignment explanation
Indices: 21157549--21158030 Score: 580
Period size: 98 Copynumber: 5.0 Consensus size: 95
21157539 TTCGCATTAT
21157549 CCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 CCATTCGGCCTTATCACACATATATATC--GTTCACATTCATCACATTGGCCATTCGGCCTTATC
*
21157611 TCATATATGCATGTTCACATTCATCACATTGG
64 ACATATATGCATGTTCACATTCATCACATTGG
21157643 CCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CCATTCGGCCTTATCACACATATATAT-C--GTTCACATTCATCACATTGGCCATTCGGCCTTAT
* **
21157708 CACACATATATATACGGGTTCACATTCATCACATTGG
63 --CAC--ATATATGCATGTTCACATTCATCACATTGG
*** *
21157745 CCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATTCAGCCTTATCAC
1 CCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCTTAT--C
* **
21157809 ACATATATATACGGGTTCACATTCATCACATTGG
64 AC--ATATATGCATGTTCACATTCATCACATTGG
*** * *
21157843 CCATTCGGCCTTATCACACATACGCAT-GTTCACATCCATCACAGTGGCCATTCGGCCTTATCAC
1 CCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * *
21157907 ACATACGCATGTTCACATTCATCACATTAG
66 ATATATGCATGTTCACATTCATCACATTGG
21157937 CCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTC-GCCTTAT
1 CCATTCGGCCTTATCACACATATATAT-C--GTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * *
21158001 CACACATACGCATGTTCACATCCATCACAT
63 CACATATATGCATGTTCACATTCATCACAT
21158031 AAAATCCTAA
Statistics
Matches: 351, Mismatches: 25, Indels: 21
0.88 0.06 0.05
Matches are distributed among these distances:
94 61 0.17
95 1 0.00
96 12 0.03
97 37 0.11
98 187 0.53
100 2 0.01
102 51 0.15
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (95 bp):
CCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ATATATGCATGTTCACATTCATCACATTGG
Found at i:21157689 original size:51 final size:50
Alignment explanation
Indices: 21157549--21158008 Score: 601
Period size: 47 Copynumber: 9.4 Consensus size: 50
21157539 TTCGCATTAT
**
21157549 CCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGG
* * **
21157596 CCATTCGGCCTTAT--CTCATATAT-GCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGG
21157643 CCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGG
21157694 CCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGG
***
21157745 CCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGG
*
21157792 CCATTCAGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGG
*** * *
21157843 CCATTCGGCCTTATCACACATACGCAT---GTTCACATCCATCACAGTGG
1 CCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGG
*** *
21157890 CCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTAG
1 CCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGG
21157937 CCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGG
21157988 CCATTC-GCCTTATCACACATA
1 CCATTCGGCCTTATCACACATA
21158009 CGCATGTTCA
Statistics
Matches: 374, Mismatches: 26, Indels: 23
0.88 0.06 0.05
Matches are distributed among these distances:
47 187 0.50
49 8 0.02
50 15 0.04
51 164 0.44
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (50 bp):
CCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGG
Found at i:21160337 original size:85 final size:85
Alignment explanation
Indices: 21160208--21160386 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
21160198 TATTTTATTG
*
21160208 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
21160273 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
21160293 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
21160358 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
21160378 CCCATGCTC
1 CCCATGCTC
21160387 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:21169329 original size:67 final size:67
Alignment explanation
Indices: 21169253--21169467 Score: 161
Period size: 67 Copynumber: 3.1 Consensus size: 67
21169243 GACCAAAATT
**
21169253 AATTAATATAACCGTTTATATTAATAAATTCAGTAAAATATATACAATTTATATTTTGTATGAAT
1 AATTAATATAATAGTTTATATTAATAAATTCAGTAAAATATATACAATTTATATTTTGTATGAAT
21169318 CA
66 CA
* * * * * * * * **
21169320 AATTCATATATTAATTATATTCTTTGCAA-AAGAAT-A-TTAATTTTCATACCTTTTATATTTTG
1 AATTAATATAATAGTT-TA-T-ATT--AATAA-ATTCAGTAAAATAT-ATACAATTTATATTTTG
*
21169382 -ACTGAAAT-T
59 TA-TG-AATCA
* * *
21169391 AATTAATATAATTGTTTATATTAATAAATTCAGTAAAATATATGCAATTAATATTTTGTATGAAT
1 AATTAATATAATAGTTTATATTAATAAATTCAGTAAAATATATACAATTTATATTTTGTATGAAT
21169456 CA
66 CA
*
21169458 AATTCATATA
1 AATTAATATA
21169468 TTTATTATAT
Statistics
Matches: 106, Mismatches: 28, Indels: 28
0.65 0.17 0.17
Matches are distributed among these distances:
66 7 0.07
67 38 0.36
68 10 0.09
69 2 0.02
70 10 0.09
71 32 0.30
72 7 0.07
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.44
Consensus pattern (67 bp):
AATTAATATAATAGTTTATATTAATAAATTCAGTAAAATATATACAATTTATATTTTGTATGAAT
CA
Found at i:21169446 original size:138 final size:137
Alignment explanation
Indices: 21169199--21169477 Score: 450
Period size: 138 Copynumber: 2.0 Consensus size: 137
21169189 AAAAGGAATC
**
21169199 ATATTCTTTCCAAAAGAATATAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAA
1 ATATTCTTTCCAAAAGAATATAATTTCCATACCTTTTATATTTTGACCAAAATTAATTAATATAA
*
21169264 CCGTTTATATTAATAAATTCAGTAAAATATATACAATTTATATTTTGTATGAATCAAATTCATAT
66 CCGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATAT
21169329 ATTAATT
131 ATTAATT
* * **
21169336 ATATTCTTTGCAAAAGAATATTAATTTTCATACCTTTTATATTTTGACTGAAATTAATTAATATA
1 ATATTCTTTCCAAAAGAATA-TAATTTCCATACCTTTTATATTTTGACCAAAATTAATTAATATA
** *
21169401 ATTGTTTATATTAATAAATTCAGTAAAATATATGCAATTAATATTTTGTATGAATCAAATTCATA
65 ACCGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATA
*
21169466 TATTTATT
130 TATTAATT
21169474 ATAT
1 ATAT
21169478 CTATGTTCAC
Statistics
Matches: 130, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
137 19 0.15
138 111 0.85
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.45
Consensus pattern (137 bp):
ATATTCTTTCCAAAAGAATATAATTTCCATACCTTTTATATTTTGACCAAAATTAATTAATATAA
CCGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATAT
ATTAATT
Found at i:21171585 original size:62 final size:62
Alignment explanation
Indices: 21171503--21171624 Score: 181
Period size: 62 Copynumber: 2.0 Consensus size: 62
21171493 GCCTCAGGAC
** *
21171503 GTAAACGTCTAAGGTGTGAATATTGTAATAAAATATAGAATGACAAGGCAATATCCACAAAT
1 GTAAACGTCTAAGGAATGAATACTGTAATAAAATATAGAATGACAAGGCAATATCCACAAAT
* * **
21171565 GTAAACGTCTAGGGAATGAATACTGTAATAAAATATAGAATTACAAGGTGATATCCACAA
1 GTAAACGTCTAAGGAATGAATACTGTAATAAAATATAGAATGACAAGGCAATATCCACAA
21171625 GCATACGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.25
Consensus pattern (62 bp):
GTAAACGTCTAAGGAATGAATACTGTAATAAAATATAGAATGACAAGGCAATATCCACAAAT
Found at i:21176726 original size:37 final size:37
Alignment explanation
Indices: 21176675--21176812 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
21176665 AATAGTCCCT
* *
21176675 ACACGTAGTTATCGGGTCTTACCCGGACAAAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
*
21176712 ACACGTAGTCATCGGGTCTTACCCGAACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
21176749 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
*
21176786 ACACGTAGTCATCGGATCTTACCCGGA
1 ACACGTAGTCATCGGGTCTTACCCGGA
21176813 ATATATTTCC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
Found at i:21177039 original size:48 final size:48
Alignment explanation
Indices: 21176982--21177437 Score: 761
Period size: 48 Copynumber: 9.5 Consensus size: 48
21176972 CTAGCCGAAT
*
21176982 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
21177030 CATTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
21177078 CACTAGCCATTCGACTTTACCACCTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
21177126 CACTAGCCATTTGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
21177174 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
21177222 CACTAGCCAATT-GGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCC-ATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
21177270 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
21177318 CACAAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
21177366 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
21177414 CATTAGCCATTCGACTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
21177438 CACATATATA
Statistics
Matches: 385, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 3 0.01
48 379 0.98
49 3 0.01
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:21179831 original size:47 final size:48
Alignment explanation
Indices: 21179759--21180016 Score: 160
Period size: 47 Copynumber: 5.5 Consensus size: 48
21179749 GGGTGTCACA
* * * *
21179759 CAGTGTAAGACCATGCCTGGGACATGGCATCGGCGTGGA-GATGAGT-GC
1 CAGTGTAAGACGATGTCTGGGACAT-GCATCGGCCTCGATGATGA-TAGC
*
21179807 CAGTGTAAGA-GATGTCTGGGACATGCATCAGCCTCGATGATGATAGC
1 CAGTGTAAGACGATGTCTGGGACATGCATCGGCCTCGATGATGATAGC
* * * *
21179854 CAATGTAAGACG-TGTCTGGGACATGCATCGG-CT--AAGTTTCAT-GC
1 CAGTGTAAGACGATGTCTGGGACATGCATCGGCCTCGATG-ATGATAGC
* * * ** * * * *
21179898 TAGTGTAAGAC-ATGTCTAGGACATGTATC-AACACGTATACACGAGAGC
1 CAGTGTAAGACGATGTCTGGGACATGCATCGGCCTCG-AT-GATGATAGC
* * *
21179946 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA-AATAGC
1 CAGTGTAAGACGATGTCTGGGACAT-GCATCGGCCTCGAT-GATGATAGC
** *
21179995 CAACGTAAGACCATGTCTGGGA
1 CAGTGTAAGACGATGTCTGGGA
21180017 TATGGCAGCA
Statistics
Matches: 162, Mismatches: 34, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
44 29 0.18
45 3 0.02
46 13 0.08
47 48 0.30
48 24 0.15
49 35 0.22
50 7 0.04
51 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
CAGTGTAAGACGATGTCTGGGACATGCATCGGCCTCGATGATGATAGC
Found at i:21187381 original size:47 final size:45
Alignment explanation
Indices: 21187317--21187623 Score: 201
Period size: 47 Copynumber: 6.5 Consensus size: 45
21187307 AGAGCTAGTA
*
21187317 TAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGGACTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATTAAGATGAGG-CCAGTG
* * *
21187365 TAAGATATGTCTGGGACATGCATCAGCCACATTAAGAT-A-GCCAGCG
1 TAAGACATGTCTGGGACATGCATC-G--GCATTAAGATGAGGCCAGTG
* *
21187411 TAAGACCATGTCTGGGACATGGCATTGGC-GTAGAGATGAGTGCCAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATTA-AGATGAG-GCCAGTG
* * * * *
21187459 TAAGACATGTCTAGGACATGCATCGGCCTCGATGATGATAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAT-TAAGATGA-GGCCAGTG
* * * * * * *
21187506 TAAGTCGTGTCTGGGACATGCATC--AACTAAGTTGCGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTAAGATGAG-GCCAGTG
* * * * * *
21187550 TAAGACATGTCTAGGACATGCATCGACACGTATACACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCA-TTA-AGATGAG-GCCAGTG
21187598 TAAGACCATGTCTGGGACATGGCATC
1 TAAGA-CATGTCTGGGACAT-GCATC
21187624 AGCCTCGATG
Statistics
Matches: 202, Mismatches: 38, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
44 33 0.16
45 5 0.02
46 23 0.11
47 77 0.38
48 37 0.18
49 22 0.11
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
TAAGACATGTCTGGGACATGCATCGGCATTAAGATGAGGCCAGTG
Found at i:21187431 original size:94 final size:93
Alignment explanation
Indices: 21187317--21187623 Score: 329
Period size: 94 Copynumber: 3.3 Consensus size: 93
21187307 AGAGCTAGTA
* * *
21187317 TAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAG-GACTAGTGTAAGATATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCACTAAGATGAGTG-CTAGTGTAAGACATGTCTAGGA
*
21187381 CATGCATCAGCCACATTAAGATAGCCAGCG
65 CATGCATC-GCCACATTAAGATAGCCAGTG
* * *
21187411 TAAGACCATGTCTGGGACATGGCATTGGC-GTAGAGATGAGTGCCAGTGTAAGACATGTCTAGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCACTA-AGATGAGTGCTAGTGTAAGACATGTCTAGGA
* * *
21187475 CATGCATCGGCCTCGATGATGATAGCCAGTG
65 CATGCATC-GCCAC-ATTAAGATAGCCAGTG
* * * * *
21187506 TAAG-TCGTGTCTGGGACAT-GCATC--AACTAAGTTGCGTGCTAGTGTAAGACATGTCTAGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCACTAAGATGAGTGCTAGTGTAAGACATGTCTAGGAC
* * * *
21187567 ATGCATCGACACGTATACACGAGAGCTAGTG
66 ATGCATCGCCACAT-TA-A-GATAGCCAGTG
21187598 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
21187624 AGCCTCGATG
Statistics
Matches: 177, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
89 1 0.01
90 4 0.02
91 36 0.20
92 15 0.08
93 19 0.11
94 84 0.47
95 18 0.10
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACTAAGATGAGTGCTAGTGTAAGACATGTCTAGGAC
ATGCATCGCCACATTAAGATAGCCAGTG
Found at i:21187623 original size:141 final size:143
Alignment explanation
Indices: 21187306--21187663 Score: 360
Period size: 141 Copynumber: 2.5 Consensus size: 143
21187296 TGGGTTATGT
* * * * * *
21187306 GAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCAT-TAAGATGA-GGACTAGTGTAAG
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAG-CCAGTGTAAG
* *
21187369 ATATGTCTGGGACATGCATCAGCCACATTAAGATAGCCAGCGTAAGACCATGTCTGGGACATGGC
65 ATATGTCTGGGACATGCATCAACCACATTAAGATAGCCAGCGTAAGACCATGTCTAGGACATGGC
* * * *
21187434 ATTGGCGTAGAGAT
130 ATCGACGTAGACAC
* * *
21187448 GAGTGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGATGATGATAGCCAGTGTAAG-
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGCCAGTGTAAGA
* * ** * *
21187510 TCGTGTCTGGGACATGCATCAACTA-AGTTGCG-T-GCTAGTGTAAGA-CATGTCTAGGACAT-G
66 T-ATGTCTGGGACATGCATCAACCACA-TTAAGATAGCCAGCGTAAGACCATGTCTAGGACATGG
*
21187570 CATCGACACGTATACAC
129 CATCG--ACGTAGACAC
*
21187587 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGGA-GATAGCCAGTGTAAG
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-GATGATAGCCAGTGTAAG
*
21187651 ACCATGTCTGGGA
65 A-TATGTCTGGGA
21187664 TATGGCAGCG
Statistics
Matches: 177, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
137 5 0.03
138 13 0.07
139 30 0.17
140 25 0.14
141 79 0.45
142 25 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (143 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGCCAGTGTAAGA
TATGTCTGGGACATGCATCAACCACATTAAGATAGCCAGCGTAAGACCATGTCTAGGACATGGCA
TCGACGTAGACAC
Found at i:21197107 original size:89 final size:89
Alignment explanation
Indices: 21196963--21197140 Score: 248
Period size: 89 Copynumber: 2.0 Consensus size: 89
21196953 CATCCATTAT
* * *
21196963 GAACTAGGACCAACTCAAAGAGCCCGGATGCTCACATCCATAATGAACTCAGACCAACTCAACGA
1 GAACTAGGACCAACTCAAAGAGCCCAGATGCTCACATACATAATGAACTCAGACCAACTCAACAA
*
21197028 GCTCGGATGCTTCACATATATCAC
66 GCTCGGATGCTTCACATAAATCAC
* * * * **
21197052 GAACTTGGACCAACTCAATGAGCTCAGATGCTCGCATACATAATGAACTTGGACCAACTCAACAA
1 GAACTAGGACCAACTCAAAGAGCCCAGATGCTCACATACATAATGAACTCAGACCAACTCAACAA
* *
21197117 GTTTGGATGCTTCACATAAATCAC
66 GCTCGGATGCTTCACATAAATCAC
21197141 AAATATCAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.21
Consensus pattern (89 bp):
GAACTAGGACCAACTCAAAGAGCCCAGATGCTCACATACATAATGAACTCAGACCAACTCAACAA
GCTCGGATGCTTCACATAAATCAC
Found at i:21197126 original size:44 final size:44
Alignment explanation
Indices: 21196950--21197134 Score: 183
Period size: 44 Copynumber: 4.2 Consensus size: 44
21196940 GACACATGTA
* * * *
21196950 TCACATCCATTATGAACTAGGACCAACTCAA-AGAGCCCGGATGC
1 TCACATACATAATGAACTTGGACCAACTCAACA-AGCTCGGATGC
* ** *
21196994 TCACATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
1 TCACATACATAATGAACTTGGACCAACTCAACAAGCTCGGATGC
* * * ** *
21197038 TTCACATATATCACGAACTTGGACCAACTCAATGAGCTCAGATGC
1 -TCACATACATAATGAACTTGGACCAACTCAACAAGCTCGGATGC
* * *
21197083 TCGCATACATAATGAACTTGGACCAACTCAACAAGTTTGGATGC
1 TCACATACATAATGAACTTGGACCAACTCAACAAGCTCGGATGC
21197127 TTCACATA
1 -TCACATA
21197135 AATCACAAAT
Statistics
Matches: 115, Mismatches: 23, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
44 73 0.63
45 42 0.37
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (44 bp):
TCACATACATAATGAACTTGGACCAACTCAACAAGCTCGGATGC
Found at i:21197621 original size:20 final size:18
Alignment explanation
Indices: 21197584--21197634 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
21197574 CTATAGCAAC
21197584 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
21197601 TCACATATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
21197621 TTACAACTTTACAA
1 TCACAA-TTTACAA
21197635 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:21200014 original size:12 final size:12
Alignment explanation
Indices: 21199997--21200031 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
21199987 CCTCACACGC
21199997 CCGTGTGCTAGG
1 CCGTGTGCTAGG
21200009 CCGTGTGCTAGG
1 CCGTGTGCTAGG
21200021 CCGTGTGCTAG
1 CCGTGTGCTAG
21200032 CATGGTCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.26, G:0.40, T:0.26
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:21200053 original size:13 final size:13
Alignment explanation
Indices: 21200035--21200074 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
21200025 GTGCTAGCAT
21200035 GGTCAAGCCACAC
1 GGTCAAGCCACAC
*
21200048 GGTCAAGCCACAT
1 GGTCAAGCCACAC
21200061 GGTCAAGCCACAC
1 GGTCAAGCCACAC
21200074 G
1 G
21200075 CCTGTGTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.30, C:0.35, G:0.25, T:0.10
Consensus pattern (13 bp):
GGTCAAGCCACAC
Found at i:21211771 original size:19 final size:19
Alignment explanation
Indices: 21211736--21211773 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21211726 TTGCAATTTA
*
21211736 AATTCTTATTTTCTTTTCT
1 AATTCTTATTTTATTTTCT
21211755 AATTCTTCA-TTTATTTTCT
1 AATTCTT-ATTTTATTTTCT
21211774 TCTGGCAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.66
Consensus pattern (19 bp):
AATTCTTATTTTATTTTCT
Found at i:21221582 original size:40 final size:39
Alignment explanation
Indices: 21221551--21221760 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
21221541 GGACTAAGAT
* *
21221551 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
21221591 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
21221631 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
21221671 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
21221711 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
21221750 CCGAAGGCATT
1 CCGAAGGCATT
21221761 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:21221714 original size:120 final size:120
Alignment explanation
Indices: 21221498--21221760 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
21221488 TTGAATGCTG
* *
21221498 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
21221562 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
21221618 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
21221681 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
21221737 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
21221761 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:21221780 original size:79 final size:80
Alignment explanation
Indices: 21221499--21221795 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
21221489 TGAATGCTGT
* ** * * * **
21221499 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
21221562 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
21221579 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
21221643 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
21221659 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
21221723 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
21221738 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
21221796 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:21226387 original size:43 final size:43
Alignment explanation
Indices: 21226321--21226485 Score: 176
Period size: 43 Copynumber: 3.8 Consensus size: 43
21226311 AGCTCATACA
* * *
21226321 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* * * ** *
21226364 ATGCCACTGTCCCAGGCAGGGTCTTACCCGAAATCAAATA-CA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
*
21226406 ATTG-CAATGTACCAGACATGGTCTTACATGTAAATTTC-AA-ATCG
1 A-TGCCAATGTCCCAGACATGGTCTTACATG-AAA--TCAAATATCG
21226450 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
21226486 CTTATTGAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 22 0.22
43 43 0.44
44 29 0.30
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:21229757 original size:18 final size:18
Alignment explanation
Indices: 21229714--21229758 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
21229704 GGTTTTTCTA
*
21229714 AAATTTCTAGTGATTTTCC
1 AAATTTCTAGTGA-TCTCC
21229733 AAATTTCTAGTGA-CTCC
1 AAATTTCTAGTGATCTCC
21229750 ATAATTTCT
1 A-AATTTCT
21229759 TTGCATCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 7 0.29
19 13 0.54
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (18 bp):
AAATTTCTAGTGATCTCC
Found at i:21230264 original size:53 final size:54
Alignment explanation
Indices: 21230197--21230403 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
21230187 TTCCTTTTTA
* *
21230197 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
21230250 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
21230304 TAGTTTATCAATGCCATGTCTTGATATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
21230359 AACTTACCAATGCCATGCCTTGGCATAGTCATACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
21230404 AAACCTTAAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 46 0.39
54 35 0.29
55 38 0.32
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:21232598 original size:36 final size:36
Alignment explanation
Indices: 21232558--21232630 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
21232548 TTTCCACGAG
21232558 AATGATTTTGTAAAAACCTTGTGATTATTGGTCTAT
1 AATGATTTTGTAAAAACCTTGTGATTATTGGTCTAT
*
21232594 AATGATTTTGTGAAAACCTTGTGATTATTGGTCTAT
1 AATGATTTTGTAAAAACCTTGTGATTATTGGTCTAT
21232630 A
1 A
21232631 CTTGTGATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (36 bp):
AATGATTTTGTAAAAACCTTGTGATTATTGGTCTAT
Found at i:21236121 original size:47 final size:45
Alignment explanation
Indices: 21235909--21236176 Score: 151
Period size: 47 Copynumber: 5.8 Consensus size: 45
21235899 GTAAGGTGCT
* * * *
21235909 GATGCCATGTCCTAGACATAGTCTTACACGA-CCTCATATTGCAA-CTC
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGGCTCAT-CT-CAATGTC
* * *
21235956 GATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTC-ATAGCC
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGGC--TCATCTCAAT-GTC
* * * * * * * *
21236004 AATGTATGTCCCAGACATGTCTTACA-TTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGGC-T-CATCTCAATGTC
*
21236050 GATGCATATTCC-AGACATGTCTTACACTAGGCTCATCTCAATGTC
1 GATGCAT-GTCCTAGACATGTCTTACACTAGGCTCATCTCAATGTC
21236095 GATGCCATGTCCTAGACATGGTCTTACACT-GGCTC-TCAT-AATGTGGCC
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGGCTCATC-TCAATGT---C
*
21236143 GATGCATGTCCTAGACATTTCTTACACTA-GCTCA
1 GATGCATGTCCTAGACATGTCTTACACTAGGCTCA
21236177 CACACAAATG
Statistics
Matches: 179, Mismatches: 23, Indels: 38
0.75 0.10 0.16
Matches are distributed among these distances:
45 24 0.13
46 67 0.37
47 74 0.41
48 10 0.06
49 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCTAGACATGTCTTACACTAGGCTCATCTCAATGTC
Found at i:21242848 original size:42 final size:42
Alignment explanation
Indices: 21242802--21242882 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
21242792 GCCGAACCAC
*
21242802 ACGCCCATGGGGTAGACCGTGTGTCACACACAGCCTAGACTT
1 ACGCCCATAGGGTAGACCGTGTGTCACACACAGCCTAGACTT
**
21242844 ACGCCCATAGGGTAGACCGTGTGTCACACATGGCCTAGA
1 ACGCCCATAGGGTAGACCGTGTGTCACACACAGCCTAGA
21242883 TACACGCTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (42 bp):
ACGCCCATAGGGTAGACCGTGTGTCACACACAGCCTAGACTT
Found at i:21243684 original size:47 final size:47
Alignment explanation
Indices: 21243609--21243764 Score: 124
Period size: 46 Copynumber: 3.4 Consensus size: 47
21243599 GCCATGTCTA
* * * *
21243609 AGACACGGTCTTACACTGGCTCATATCTC-AAGTCGATGTCATGCCCC
1 AGACATGGTCTTACACTGACTAATATCTCGAAGCCGATG-CATGCCCC
* *
21243656 AGACATGGTCTTACACTGAC-AATCATCTCGTAGCCGATGCATGTCCC
1 AGACATGGTCTTACACTGACTAAT-ATCTCGAAGCCGATGCATGCCCC
* * ** * * **
21243703 AGACAT-GTCTTATACT-AGCTTACGTCTCGAGGCTGATGCATGTTCC
1 AGACATGGTCTTACACTGA-CTAATATCTCGAAGCCGATGCATGCCCC
21243749 AGACAT-GTCTTACACT
1 AGACATGGTCTTACACT
21243765 AGCCCTCGTC
Statistics
Matches: 90, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 45 0.50
47 37 0.41
48 7 0.08
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
AGACATGGTCTTACACTGACTAATATCTCGAAGCCGATGCATGCCCC
Found at i:21243731 original size:46 final size:46
Alignment explanation
Indices: 21243642--21243862 Score: 159
Period size: 46 Copynumber: 4.7 Consensus size: 46
21243632 TATCTCAAGT
* * *
21243642 CGATGTCATGCCCCAGACATGGTCTTACACT-GACAATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-C-TTCGTCTCGTAGGC
*
21243690 CGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGTAGGC
* * * * *
21243736 TGATGCATGTTCCAGACATGTCTTACACTAGCCCTCGTCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAG-CTTCGTCTCGTAGGC
* * * * * *
21243782 CAATGTCATGTCCTAAACATGGTCTTACACTGGCTCTCATAAT-GTCA--C
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGT-AGGC
21243830 CGATGCATGTCCCAGACATGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
21243863 CACACACGAA
Statistics
Matches: 139, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
45 2 0.01
46 71 0.51
47 40 0.29
48 24 0.17
49 1 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGTAGGC
Found at i:21248620 original size:23 final size:22
Alignment explanation
Indices: 21248578--21248621 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
21248568 TAAAAATTAT
*
21248578 TTTATATTAATATTTTATAAAC
1 TTTATATTAATATTTCATAAAC
21248600 TTTATAATTAA-ATTTACATAAA
1 TTTAT-ATTAATATTT-CATAAA
21248622 AATATTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTATATTAATATTTCATAAAC
Found at i:21249890 original size:19 final size:20
Alignment explanation
Indices: 21249844--21249895 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
21249834 TAATTTTAGA
*
21249844 TATTTTATAAAAAAATTATTT
1 TATTTT-TAATAAAATTATTT
21249865 T-TATTTTAATAAAA-TATTT
1 TAT-TTTTAATAAAATTATTT
*
21249884 TATTTTTTATAA
1 TATTTTTAATAA
21249896 TTAATTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 14 0.52
20 9 0.33
21 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTTTTAATAAAATTATTT
Found at i:21249891 original size:20 final size:21
Alignment explanation
Indices: 21249844--21249892 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
21249834 TAATTTTAGA
*
21249844 TATTTTATAAAAAAATTATTT
1 TATTTTTTAAAAAAATTATTT
* *
21249865 T-TATTTTAATAAAA-TATTT
1 TATTTTTTAAAAAAATTATTT
21249884 TATTTTTTA
1 TATTTTTTA
21249893 TAATTAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.26
20 16 0.70
21 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTTTTAAAAAAATTATTT
Found at i:21249896 original size:22 final size:21
Alignment explanation
Indices: 21249846--21249896 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
21249836 ATTTTAGATA
21249846 TTTTATAA-AAAAATTATTTT
1 TTTTATAATAAAAATTATTTT
21249866 TATTT-TAATAAAATATT-TTATT
1 T-TTTATAATAAAA-ATTATT-TT
21249888 TTTTATAAT
1 TTTTATAAT
21249897 TAATTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.15
21 12 0.46
22 10 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTATAATAAAAATTATTTT
Found at i:21250935 original size:13 final size:14
Alignment explanation
Indices: 21250903--21250935 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
21250893 ATTAGGAAAC
21250903 TTACATAAAAAATA
1 TTACATAAAAAATA
21250917 TATACATAAAAAAT-
1 T-TACATAAAAAATA
21250931 TTACA
1 TTACA
21250936 ACAATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 2 0.11
15 12 0.67
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
TTACATAAAAAATA
Found at i:21251083 original size:27 final size:28
Alignment explanation
Indices: 21251053--21251112 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
21251043 TGTAATAATA
*
21251053 ATATATACACAAT-ATGGTATTTAA-AAT
1 ATATATACA-AATAATAGTATTTAAGAAT
* *
21251080 ATATATATATATAATAGTATTTAAGAAT
1 ATATATACAAATAATAGTATTTAAGAAT
21251108 ATATA
1 ATATA
21251113 CATAAGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.07
27 18 0.64
28 8 0.29
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (28 bp):
ATATATACAAATAATAGTATTTAAGAAT
Found at i:21251164 original size:39 final size:39
Alignment explanation
Indices: 21251077--21251164 Score: 106
Period size: 39 Copynumber: 2.3 Consensus size: 39
21251067 TGGTATTTAA
* * *
21251077 AATATATATATATATAATAGTATTTAAGAATATATACAT
1 AATATATATATATATAATAGCATTAAAAAATATATACAT
* * *
21251116 AAGAAATATATA-ACTAATGGCATTAAAAAATATATACAT
1 AATATATATATATA-TAATAGCATTAAAAAATATATACAT
21251155 AATATATATA
1 AATATATATA
21251165 ATACATAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.03
39 39 0.98
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.35
Consensus pattern (39 bp):
AATATATATATATATAATAGCATTAAAAAATATATACAT
Found at i:21252702 original size:91 final size:91
Alignment explanation
Indices: 21252599--21252765 Score: 246
Period size: 91 Copynumber: 1.8 Consensus size: 91
21252589 AATAGACAAT
* *
21252599 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCGCAATACGA
21252663 GTCGATTTTTTTGAAAGGCAAAAATTG
65 GTCGATTTTTTTGAAAGGCAAAAATTG
* * * **
21252690 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
*
21252755 TTGATTTTTTT
66 TCGATTTTTTT
21252766 TGACAACAGA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
90 2 0.03
91 65 0.97
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (91 bp):
AAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
TCGATTTTTTTGAAAGGCAAAAATTG
Found at i:21252973 original size:164 final size:164
Alignment explanation
Indices: 21252636--21254035 Score: 771
Period size: 164 Copynumber: 8.8 Consensus size: 164
21252626 GCGTGAGCCA
* *** * *
21252636 AGGCTCAACTCACCTCTCGCAATATGAGTCG-ATTTTTTTGAAAGGCAAAAATTGAAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * ** **
21252700 ATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTGATTTTTT
66 ATTGAAATTAACTCAAC--GTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTTT
* * *
21252765 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTG
128 TTGAAAACAAAAATTGAAAATACCTCAGCATGTCCTG
* *
21252802 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATGTTTTTGAAAAATATAAATTTAAAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * *
21252867 ATTGAAATTAACTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTTT
66 ATTGAAATTAACTCAACGTGACC-TGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTT
*
21252930 GAAAGACAAAAATTGAAAATACCTCAGCATGTCTTG
130 GAAA-ACAAAAATTGAAAATACCTCAGCATGTCCTG
** *
21252966 AGGCTCAACTCATTTCTCGCAATATGAGTTG-A--TTTTT------T-T---TTGACAA-CAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * **
21253017 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTGATTTTTTTT
66 ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA---TTTTT
* * *
21253082 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTG
128 TTGAAAACAAAAATTGAAAATACCTCAGCATGTCCTG
* * *
21253119 AGGCTCAATTCACCTCTCGTAATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * *
21253184 ATTGAAATTAACTCAATGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTTT
66 ATTGAAATTAACTCAACGTGACC-TGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTT
* * *
21253247 GAAAGACAAAAATGGAAAATACTTCAGCATGTCTTG
130 GAAA-ACAAAAATTGAAAATACCTCAGCATGTCCTG
** *
21253283 AGGCTCAACTCATTTCTCGCAATATGAGTTG-A---TTTT------T-T---TT-ACAA-CAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * *
21253332 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTT
66 ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG-ATTTTTTT
* *
21253397 GAAAA-ATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTG
130 GAAAACA-A-AAATT--------G--A---AAA-TACCTCAGCATGTCC-TG
* *
21253447 AGGCTCAACTCACCTTTCGCAATATGAGTTG-A--TTTTTG----------A---CAAA-CAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * ** * *
21253495 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAA
66 ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTT---
* * * *
21253560 AAATAGATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCG
127 ---T---TTGAAA-ACAAAAATTGAAAATACCTCAGCATGTCCTG
21253605 AGGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTG----A-A-AAA-T-------AGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * * *
21253653 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
66 ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT---
* * * * * * *
21253718 AAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTG
128 ----TTGAA---AACAAAAATTGAAAATACCTCAGCATGTCCTG
** * *
21253762 AGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTTT------TTTAAA--G---A-CAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * * * * ** *
21253814 ATTGAAAATATCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTG
66 ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTG
* *
21253879 AAAGAAAAAAATTGAAAATACCTCAGCATGTCTTG
131 AAA-ACAAAAATTGAAAATACCTCAGCATGTCCTG
** *
21253914 AGGCTCAACTCATTTCTCGCAATATGAGTTG-A-TTTTTT------T-T---TTGACAA-CAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
* * * * *
21253966 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGAATTTTTTT
66 ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG-ATTTTTTT
21254031 GAAAA
130 GAAAA
21254036 ATATAAATTT
Statistics
Matches: 1026, Mismatches: 122, Indels: 186
0.77 0.09 0.14
Matches are distributed among these distances:
148 54 0.05
149 9 0.01
150 69 0.07
151 16 0.02
152 113 0.11
153 68 0.07
154 15 0.01
155 5 0.00
156 5 0.00
157 58 0.06
158 108 0.11
159 12 0.01
160 5 0.00
161 65 0.06
162 4 0.00
163 89 0.09
164 153 0.15
165 36 0.04
166 37 0.04
167 90 0.09
169 1 0.00
172 11 0.01
173 2 0.00
174 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (164 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAA
ATTGAAATTAACTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTG
AAAACAAAAATTGAAAATACCTCAGCATGTCCTG
Found at i:21253116 original size:77 final size:76
Alignment explanation
Indices: 21252857--21254035 Score: 522
Period size: 77 Copynumber: 15.1 Consensus size: 76
21252847 ATATAAATTT
* * * * *
21252857 AAAAGCAGAAATTGAAATTAACTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGT
1 AAAA-CAGAAATTGAAATTACCTCAGCATGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
21252921 TGA---TTTTTTG
64 TGATTTTTTTTTG
* * * **
21252931 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
21252996 GATTTTTTTTTG
65 GATTTTTTTTTG
* * ** *
21253008 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
21253073 ATTTTTTTTTTG
66 A-TTTTTTTTTG
* * *
21253085 ACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAATTCACCTCTCGTAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
21253150 A-ATTTTTTTG
66 ATTTTTTTTTG
* * * * * * * * * *
21253160 AAAAATATAAATTTAAA--A--GCAGAAATTGAAATTAACTCAATGTGCCTTGAGGCTCAACT-T
1 -AAAACAGAAATTGAAATTACCTCAG-CA-TG----T--C-C--TGAGGC-TCA-ACTCACCTCT
* *
21253220 AC-C--TCTCGCAGTATGAGTTGATTTTTTG
52 -CGCAATAT-G-AGT-TGA-TT-TTTTTTTG
* * * * * **
21253248 AAAGACAAAAATGGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
21253313 GA-TTTTTTTT-
65 GATTTTTTTTTG
* *
21253323 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
21253388 A-ATTTTTTTG
66 ATTTTTTTTTG
* * * * * * * * *
21253398 AAAAATATAAATTGAAA--A--GCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCA
1 -AAAACAGAAATTGAAATTACCTCAG-CA-TG----T-CCT-GA-G-G-C-TCA-ACTCACCTCT
* * * **
21253459 C-C--TTTCGCAATATGAGTTGATTTTTG
52 CGCAATAT-G-AGT-TGATTTTTTTTT-G
* ** *
21253485 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
21253550 GA----TTTTTG
65 GATTTTTTTTTG
* * * *** * * * * * *
21253558 AAAA-ATAGATTGAAA-CACAAAAATTGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCAC-C
1 AAAACAGAAATTGAAATTAC-CTCA--G-C-ATGTCCT--GAG-G-CTC-A-ACTCACCTCTCGC
* * **
21253619 --TCTCGCAATATGAGTTGATTTTTG
55 AATAT-G-AGT-TGA-TTTTTTTTTG
* * *
21253643 AAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*** *
21253708 GATTTTTGAAAAACATA
65 GATTTTT-----TTTTG
* * * * **
21253725 AATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 AA---AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
21253790 TTGATTTTTTTTTT
63 TTGATTTTTTTTTG
* * * * **
21253804 AAAGACAAAAATTGAAAATATCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
21253869 GA--TTTTTTTG
65 GATTTTTTTTTG
* * * * **
21253879 AAAGAAAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
21253944 GATTTTTTTTTTG
65 GA-TTTTTTTTTG
* * *
21253957 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
21254022 A-ATTTTTTTG
66 ATTTTTTTTTG
21254032 AAAA
1 AAAA
21254036 ATATAAATTT
Statistics
Matches: 839, Mismatches: 164, Indels: 203
0.70 0.14 0.17
Matches are distributed among these distances:
70 2 0.00
71 10 0.01
72 9 0.01
73 4 0.00
74 129 0.15
75 96 0.11
76 90 0.11
77 199 0.24
78 36 0.04
79 26 0.03
80 24 0.03
81 15 0.02
82 11 0.01
83 9 0.01
84 82 0.10
85 28 0.03
86 11 0.01
87 27 0.03
88 18 0.02
89 3 0.00
90 3 0.00
91 4 0.00
92 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTTG
Found at i:21253362 original size:238 final size:238
Alignment explanation
Indices: 21252939--21254193 Score: 1026
Period size: 238 Copynumber: 5.3 Consensus size: 238
21252929 TGAAAGACAA
* * * * **
21252939 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TT
* * * * * * *
21253004 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGTCTCTCGCAATACGA
62 TTTGAAAACAAAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGA
* * *
21253069 GTTGATTTTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAATTCACC
127 GTTGA-TTTTTTTTTGAAACACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACC
*
21253133 TCTCGTAATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAG
191 TCTCGCAATATGAGTTG-ATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * * *
21253182 AAATTGAAATTAACTCAATGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
21253247 GAAAGACAAAAATGGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
65 GAAA-ACAAAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGT
* * *
21253312 TGA-TTTTTTTT-ACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
129 TGATTTTTTTTTGAAACACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
*
21253374 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAG
194 CGCAATATGAGTTG-ATTTTTTTGAAAAATATAAATTTAAAAGCAG
*
21253420 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * * *
21253485 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTT
66 A-AAACAAAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
* * * *
21253550 GATTTTTGAAAAATAGATTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAAC
130 GATTTTT------T--TTTGAAACACAAAAATTGA-AATTACCTCAGCATGTCCTGAGGCTCAAC
21253614 TCACCTCTCGCAATATGAGTTGA--TTTTTG----A-A-AAA--T------AG
186 TCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
* *
21253651 AAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
21253715 GAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
65 G-AAAACA-AAAATG----G--A---AAA-TACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
* * * * *
21253780 GCAATATGAGTTGATTTTTTTTTTAAAGACAAAAATTGAAAATATCTCAGCATGTCTTGAGGCTC
118 GCAATATGAGTTGATTTTTTTTTGAAACACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTC
** *
21253845 AACTCATTTCTCGCAATATGAGTTGATTTTTTTG--------AAA---GAAA--A-
183 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * * * **
21253887 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----T
* * * * * **
21253952 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATG
61 TTTTGAAAACAAAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
* * * * *
21254017 AGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTG
126 AGTTG-ATTTTTTT------T-T-GA---AACA-CAAAAATTGAAATTACCTCAGCATGTCC-TG
* * * *
21254081 AGGCTCAACTTACCTCTCACAGTATGAGTTGA---TTTT------T-T---TTGAAAAGCAG
177 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * *
21254130 AAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
21254194 TTGAAACAGA
Statistics
Matches: 855, Mismatches: 95, Indels: 129
0.79 0.09 0.12
Matches are distributed among these distances:
229 43 0.05
230 10 0.01
231 66 0.08
232 6 0.01
233 3 0.00
234 61 0.07
235 2 0.00
236 62 0.07
237 65 0.08
238 160 0.19
239 18 0.02
240 18 0.02
241 67 0.08
242 101 0.12
243 103 0.12
244 1 0.00
245 6 0.01
246 2 0.00
247 3 0.00
248 56 0.07
249 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (238 bp):
AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAAAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
ATTTTTTTTTGAAACACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
Found at i:21253376 original size:315 final size:307
Alignment explanation
Indices: 21252693--21254199 Score: 1547
Period size: 317 Copynumber: 4.8 Consensus size: 307
21252683 AAAATTGAAA
* * ** *
21252693 AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTG
1 AACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
21252758 A--TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
64 ATTTTTTTTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCG
21252821 CAATATGAGTTGAATGTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGT
129 CAATATGAGTTG-A--TTTTTG-----T-T--ATTTAAAAGCAGAAATTGAAATTAACTCAACGT
* *
21252886 GCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAAAT
183 GCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAAT
21252950 ACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGAC
248 ACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGAC
** *
21253010 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
21253075 TTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAATTCACCTCTCGTA
66 TTTTTTTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCA
*
21253140 ATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAATGTGC
131 ATATGAGTTG-A--TTTTTG-----T-T--ATTTAAAAGCAGAAATTGAAATTAACTCAACGTGC
* * *
21253205 CTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTTTGAAAGACAAAAATGGAAAATAC
185 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATAC
*
21253269 TTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTT-AC
250 CTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGAC
21253325 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A
* *
21253390 TTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCA
65 -TTTTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAACATGTCC-TGAGGCTCA
* * * *
21253454 ACTCACCTTTCGCAATATGAGTTGATTTTTG--A---CAAA-CAGAAATTGAAATTACCTCAGCG
117 ACTCACCTCTCGCAATATGAGTTGATTTTTGTTATTTAAAAGCAGAAATTGAAATTAACTCAACG
** * *
21253513 TGTCC-TGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAATAGATTGAAACACA
182 TG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT------T---TTGAAAGACA
* * * ** **
21253577 AAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----T
236 AAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
*
21253638 TTTTGAAA
301 TTTTG-AC
* *
21253646 AATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** * * *
21253711 TTTTGAAAAACATAAATTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCA
66 TTTT--------T-TTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCA
** * * * * * *
21253774 TTTCTCGCAATATGAGTTGATTTTT-TT-TTT-AAAGACAAAAATTGAAAATATCTCAGCATGTC
122 CCTCTCGCAATATGAGTTGATTTTTGTTATTTAAAAG-CAGAAATTGAAATTAACTCAACGTGCC
** *
21253836 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGAAAAAAATTGAAAATACC
186 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
21253901 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGAC
251 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTTTGAC
*
21253959 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A
* * *
21254024 TTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCA
65 -TTTTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAACATGTCC-TGAGGCTCA
* * * * * * *
21254088 ACTTACCTCTCACAGTATGAGTTGA-TTTT-TT-TTGAAAAGCAGAAATTGAAAATACCTCAAAG
117 ACTCACCTCTCGCAATATGAGTTGATTTTTGTTATTTAAAAGCAGAAATTGAAATTAACTCAACG
*
21254150 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
182 TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
21254200 CAGAAATAAA
Statistics
Matches: 1039, Mismatches: 83, Indels: 135
0.83 0.07 0.11
Matches are distributed among these distances:
307 1 0.00
309 61 0.06
311 51 0.05
312 7 0.01
313 64 0.06
314 7 0.01
315 164 0.16
316 14 0.01
317 268 0.26
318 85 0.08
319 122 0.12
320 1 0.00
321 62 0.06
322 61 0.06
323 1 0.00
324 1 0.00
325 6 0.01
327 10 0.01
328 53 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (307 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTGTTATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCTTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTC
TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGAC
Found at i:21253633 original size:158 final size:160
Alignment explanation
Indices: 21253245--21254193 Score: 1062
Period size: 158 Copynumber: 5.9 Consensus size: 160
21253235 AGTTGATTTT
* * * * * * **
21253245 TTGAAAGACAAAAATGGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
21253310 GTTGATTTTTTTTAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
65 GTTGA-TTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
21253374 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
129 CGCAATATGAGTTG-A--TTTTTGAAAAATATAAA
* *
21253409 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* **
21253474 GTTGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
65 GTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
21253538 GTAATATGAGTTGATTTTTG-AAAA-ATAGA
130 GCAATATGAGTTGATTTTTGAAAAATATAAA
* **
21253567 TTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATG
* *
21253631 AGTTGA-TTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 AGTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
21253695 CGCAATATGAGTTGATTTTTGAAAAACATAAA
129 CGCAATATGAGTTGATTTTTGAAAAATATAAA
* * * **
21253727 TTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * **
21253790 TTGATTTTTTTTTTA-AAGACAAAAATTGAAAATATCTCAGCATGTCTTGAGGCTCAACTCATTT
66 TTGA---TTTTTTGACAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
21253854 CTCGCAATATGAGTTGATTTTT------T-TGAAA
127 CTCGCAATATGAGTTGATTTTTGAAAAATAT-AAA
* * * * **
21253882 --G--AA-AAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
21253942 TTGATTTTTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCT
66 TTGA----TTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
21254006 CTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
127 CTCGCAATATGAGTTG-A--TTTTTGAAAAATATAAA
* * * * *
21254043 TTTAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
** *
21254108 GTTGATTTTTTTTGA-AAAGCAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCT
65 GTTGA--TTTTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
21254172 CTCGCAATATGAGTTGATTTTT
127 CTCGCAATATGAGTTGATTTTT
21254194 TTGAAACAGA
Statistics
Matches: 680, Mismatches: 72, Indels: 67
0.83 0.09 0.08
Matches are distributed among these distances:
152 111 0.16
153 15 0.02
154 1 0.00
155 8 0.01
156 2 0.00
157 53 0.08
158 138 0.20
159 11 0.02
160 15 0.02
161 71 0.10
162 9 0.01
163 66 0.10
164 58 0.09
165 15 0.02
166 56 0.08
167 51 0.08
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (160 bp):
TTGAAAACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAATATAAA
Found at i:21253636 original size:85 final size:85
Alignment explanation
Indices: 21253493--21253651 Score: 257
Period size: 85 Copynumber: 1.9 Consensus size: 85
21253483 TGACAAACAG
* * ** *
21253493 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
21253558 AAAAATAGATTGAAACACAA
66 AAAAATAGATTGAAACACAA
21253578 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGA-AATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
21253642 GAAAAATAGA
65 GAAAAATAGA
21253652 AATTGAAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
85 66 0.97
86 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (85 bp):
AAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAATAGATTGAAACACAA
Found at i:21254118 original size:90 final size:90
Alignment explanation
Indices: 21253961--21254125 Score: 262
Period size: 90 Copynumber: 1.8 Consensus size: 90
21253951 TTTTTGACAA
* *
21253961 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCACAATATGAGTTGAATT
21254026 TTTTTGAAAAATATAAATTTAAAAG
66 TTTTTGAAAAATATAAATTTAAAAG
* *
21254051 CAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTT-ACCTCTCACAGTATGAGTTGAT
1 CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAA-TTCACCTCTCACAATATGAGTTGAA
21254114 TTTTTTTGAAAA
64 TTTTTTTGAAAA
21254126 GCAGAAATTG
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
89 2 0.03
90 65 0.94
91 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (90 bp):
CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCACAATATGAGTTGAATT
TTTTTGAAAAATATAAATTTAAAAG
Found at i:21254137 original size:76 final size:75
Alignment explanation
Indices: 21254046--21254206 Score: 245
Period size: 76 Copynumber: 2.2 Consensus size: 75
21254036 ATATAAATTT
* * * *
21254046 AAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAAAGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
21254111 GATTTTTTTTG
66 GA-TTTTTTTG
* *
21254122 AAAAGCAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAAAGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
21254187 GATTTTTTTG
66 GATTTTTTTG
21254197 -AAA-CAGAAAT
1 AAAAGCAGAAAT
21254207 AAAAACATCA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
73 7 0.09
74 3 0.04
75 8 0.10
76 61 0.77
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (75 bp):
AAAAGCAGAAATTGAAAATACCTCAAAGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTTTTTTG
Found at i:21254176 original size:166 final size:165
Alignment explanation
Indices: 21253887--21254199 Score: 457
Period size: 166 Copynumber: 1.9 Consensus size: 165
21253877 TGAAAGAAAA
* * ** *
21253887 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTT
* * ** *
21253952 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATG
65 TTTTGAAAACAGAAATTGAAAATACCTCAAAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
21254017 AGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAG
130 AGTTG-ATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * * *
21254054 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
*
21254118 TTTGAAAAGCAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTGAAAA-CAGAAATTGAAAATACCTCAAAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
21254183 AGTTGATTTTTTTGAAA
130 AGTTGATTTTTTTGAAA
21254200 CAGAAATAAA
Statistics
Matches: 130, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
165 24 0.18
166 56 0.43
167 50 0.38
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (165 bp):
AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
TTTGAAAACAGAAATTGAAAATACCTCAAAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
Found at i:21255075 original size:10 final size:10
Alignment explanation
Indices: 21255060--21255089 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
21255050 GATCCCTCTC
21255060 TCTTTTTTTT
1 TCTTTTTTTT
*
21255070 TCTTTTCTTT
1 TCTTTTTTTT
21255080 TCTTTTTTTT
1 TCTTTTTTTT
21255090 AAGATGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:21262558 original size:12 final size:12
Alignment explanation
Indices: 21262536--21262571 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
21262526 TGGGATATGC
*
21262536 AATGAATGAATG
1 AATGCATGAATG
*
21262548 GATGCATGAATG
1 AATGCATGAATG
21262560 AATGCATGAATG
1 AATGCATGAATG
21262572 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:21262558 original size:16 final size:17
Alignment explanation
Indices: 21262532--21262563 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
21262522 AGTATGGGAT
21262532 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
21262549 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
21262564 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:21264062 original size:16 final size:17
Alignment explanation
Indices: 21264037--21264099 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 17
21264027 ATTTTTATTG
21264037 AAATAATTAAA-AGAAA
1 AAATAATTAAATAGAAA
*
21264053 AAATATTTAAATAGAAATTA
1 AAATAATTAAATAG-AA--A
21264073 AAATAA-TAAA-ACGAAA
1 AAATAATTAAATA-GAAA
21264089 AAATATATTAA
1 AAATA-ATTAA
21264100 TAAAAATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
16 16 0.42
17 3 0.08
18 8 0.21
19 5 0.13
20 6 0.16
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (17 bp):
AAATAATTAAATAGAAA
Found at i:21264078 original size:36 final size:37
Alignment explanation
Indices: 21264037--21264115 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 37
21264027 ATTTTTATTG
*
21264037 AAATAATTAAAA-GAAAAAATAT-TTAAATAGAAATTA
1 AAATAATTAAAACGAAAAAATATATT-AATAAAAATTA
21264073 AAATAA-TAAAACGAAAAAATATATTAATAAAAATTA
1 AAATAATTAAAACGAAAAAATATATTAATAAAAATTA
*
21264109 ACATAAT
1 AAATAAT
21264116 ATAGAATAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
35 5 0.13
36 31 0.82
37 2 0.05
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.27
Consensus pattern (37 bp):
AAATAATTAAAACGAAAAAATATATTAATAAAAATTA
Found at i:21283699 original size:40 final size:40
Alignment explanation
Indices: 21283591--21283979 Score: 570
Period size: 40 Copynumber: 9.8 Consensus size: 40
21283581 ATTTGAATTT
* * * *
21283591 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21283630 TATTCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21283669 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21283709 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21283749 TAT-CGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21283788 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
21283828 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
21283870 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
21283910 TATCCGGGCTAAGACCC-AAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * *
21283949 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
21283980 TTGTGGTAAT
Statistics
Matches: 323, Mismatches: 21, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
38 17 0.05
39 99 0.31
40 170 0.53
42 37 0.11
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:21283803 original size:119 final size:119
Alignment explanation
Indices: 21283591--21283979 Score: 577
Period size: 119 Copynumber: 3.3 Consensus size: 119
21283581 ATTTGAATTT
* * *
21283591 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTATTCGGGCTAAGA-CCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA-TCGGGCTAAGACCCGAAGGCAT
21283654 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
65 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
21283709 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCGGGCTAAGACCCGTAGGCATT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATCGGGCTAAGACCCGAAGGCATT
21283774 TGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 TGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* *
21283828 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG--ATATAT-CGGGCTAAGACCCGAAGGC
* * * * *
21283893 AATTGTGCAAGTTGATATATCCGGGCTAAGACCC-AAGGCATTCGTGCGAGTTGCTA
63 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** *
21283949 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
21283980 TTGTGGTAAT
Statistics
Matches: 249, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
118 41 0.16
119 107 0.43
121 51 0.20
122 50 0.20
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (119 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:21283995 original size:79 final size:80
Alignment explanation
Indices: 21283591--21283979 Score: 570
Period size: 79 Copynumber: 4.9 Consensus size: 80
21283581 ATTTGAATTT
* * * * * *
21283591 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTATTCGGGCTAAGA-CCGAAGGCAT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21283654 TTGTGCGAGTTGATA
66 TTGTGCGAGTTGATA
*
21283669 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21283734 TTGTGCGAGTTGATA
66 TTGTGCGAGTTGATA
* *
21283749 TAT-CGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21283813 TTGTGCGAGTTGATA
66 TTGTGCGAGTTGATA
21283828 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATATATCCGGGCTAAGACCCGAAGGC
* *
21283893 AATTGTGCAAGTTGATA
64 ATTTGTGCGAGTTGATA
* * * ** * *
21283910 TATCCGGGCTAAGACCC-AAGGCATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
21283974 TTGTGC
66 TTGTGC
21283980 TTGTGGTAAT
Statistics
Matches: 288, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
78 30 0.10
79 125 0.43
80 59 0.20
81 17 0.06
82 57 0.20
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATA
Found at i:21294088 original size:15 final size:15
Alignment explanation
Indices: 21294068--21294097 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21294058 ATTCATATGG
*
21294068 ATCATAACTTATCAT
1 ATCATAACATATCAT
21294083 ATCATAACATATCAT
1 ATCATAACATATCAT
21294098 GCTGGATCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (15 bp):
ATCATAACATATCAT
Found at i:21299674 original size:12 final size:12
Alignment explanation
Indices: 21299657--21299683 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
21299647 ACGAGTAATG
21299657 AGTATTACATTA
1 AGTATTACATTA
21299669 AGTATTACATTA
1 AGTATTACATTA
21299681 AGT
1 AGT
21299684 GGTAACAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (12 bp):
AGTATTACATTA
Found at i:21304290 original size:28 final size:28
Alignment explanation
Indices: 21304247--21304346 Score: 148
Period size: 28 Copynumber: 3.6 Consensus size: 28
21304237 TATCTAGGAT
* *
21304247 ATGGCATTGTGCTAAGTGAAATAAGACC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
*
21304275 ATGGCAATGTGTTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
21304303 ATGGCAATGTGCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
*
21304331 ATGAC-ATGGTGCTAAG
1 ATGGCAAT-GTGCTAAG
21304347 CGAGAAATTT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 2 0.03
28 64 0.97
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (28 bp):
ATGGCAATGTGCTAAGTGAAATAAGTCC
Found at i:21304453 original size:51 final size:51
Alignment explanation
Indices: 21304373--21304672 Score: 458
Period size: 51 Copynumber: 5.9 Consensus size: 51
21304363 TGAACCTTAG
* *
21304373 GAATAAAATAACTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTCT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * * *
21304424 GAATATAATAGATTTGGACACAAGCGTGGTACTATGTGATGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
21304475 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * *
21304526 GAATATAATAGCTTTGGACACAAGCGTGGTACTATGTGATGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
21304577 GAATAAAATAGTTTTGGAAACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
21304628 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCA
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCA
21304673 TCGTATATCC
Statistics
Matches: 223, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
51 223 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:21307405 original size:44 final size:41
Alignment explanation
Indices: 21307357--21307454 Score: 117
Period size: 40 Copynumber: 2.3 Consensus size: 41
21307347 AACGATTCCA
* * *
21307357 CACACTTAGTGCCATTTGAATTAACCGAAGCTATCTCGGTATCG
1 CACACTTAGTGCCATTAG-A-TAACCCAAGCTAT-TCGGAATCG
**
21307401 CACACTTAGTGCC-TTAGATAACCCAAGCTATTTTGAATCG
1 CACACTTAGTGCCATTAGATAACCCAAGCTATTCGGAATCG
21307441 CACACTTAGTGCCA
1 CACACTTAGTGCCA
21307455 AATACCATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
40 19 0.40
41 12 0.25
42 1 0.02
43 3 0.06
44 13 0.27
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (41 bp):
CACACTTAGTGCCATTAGATAACCCAAGCTATTCGGAATCG
Found at i:21310795 original size:39 final size:39
Alignment explanation
Indices: 21310740--21310866 Score: 157
Period size: 39 Copynumber: 3.2 Consensus size: 39
21310730 GTATGAGATT
21310740 GAAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
1 GAAAA-ATATCCGGACATGAAGTCCGCAGGCTATATGCTG
* *
21310780 GAAAAATATCCGGACATG-AGATCCACAGGCTATATGCTA
1 GAAAAATATCCGGACATGAAG-TCCGCAGGCTATATGCTG
* * * * **
21310819 GAAATATATCCGGACTTGAGGTCCGTAGGCTACGTGCTG
1 GAAAAATATCCGGACATGAAGTCCGCAGGCTATATGCTG
21310858 GAAAAATAT
1 GAAAAATAT
21310867 TCGGGTTAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
38 2 0.03
39 66 0.89
40 6 0.08
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAAGTCCGCAGGCTATATGCTG
Found at i:21310887 original size:78 final size:77
Alignment explanation
Indices: 21310742--21310896 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 77
21310732 ATGAGATTGA
* * *
21310742 AAATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCACA
1 AAATATATCCGGACATGAAGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAATCCACA
21310807 GGCTATATGCTAG
66 GGCT-TATGCTAG
* * * * * ** *
21310820 AAATATATCCGGACTTGAGGTCCGTAGGCTACGTGCTGGAAAAATATTCGG-GTTAAAAATCCGC
1 AAATATATCCGGACATGAAGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAAATCCAC
21310884 AGGCTTATGCTAG
65 AGGCTTATGCTAG
21310897 TAATGTATTC
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
77 9 0.14
78 56 0.86
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (77 bp):
AAATATATCCGGACATGAAGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAATCCACA
GGCTTATGCTAG
Found at i:21315802 original size:141 final size:141
Alignment explanation
Indices: 21315605--21315891 Score: 538
Period size: 141 Copynumber: 2.0 Consensus size: 141
21315595 TCATTTAATC
* *
21315605 AATTTCCTAGTTGAACGCTTCGGAATAATAACAGATATGCAATGGTATCGCACACAGCCCACCTT
1 AATTTCCCAGTTGAACGCTTCGGAATAATAACAGATACGCAATGGTATCGCACACAGCCCACCTT
*
21315670 TAAAATCAAAGCTCTCTTGTACACACAGTGGCCTTCACTTAGCACCACTCATGTGACCTAGCTCG
66 TAAAATCAAAGCTCTCTTGTACAAACAGTGGCCTTCACTTAGCACCACTCATGTGACCTAGCTCG
21315735 ATTGTACACAT
131 ATTGTACACAT
21315746 AATTTCCCAGTTGAACGCTTCGGAATAATAACAGATACGCAATGGTATCGCACACAGCCCACCTT
1 AATTTCCCAGTTGAACGCTTCGGAATAATAACAGATACGCAATGGTATCGCACACAGCCCACCTT
*
21315811 TAAAATCAAAGCTCTCTTGTACAAATAGTGGCCTTCACTTAGCACCACTCATGTGACCTAGCTCG
66 TAAAATCAAAGCTCTCTTGTACAAACAGTGGCCTTCACTTAGCACCACTCATGTGACCTAGCTCG
21315876 ATTGTACACAT
131 ATTGTACACAT
21315887 AATTT
1 AATTT
21315892 TGGCTCTCTT
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 142 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (141 bp):
AATTTCCCAGTTGAACGCTTCGGAATAATAACAGATACGCAATGGTATCGCACACAGCCCACCTT
TAAAATCAAAGCTCTCTTGTACAAACAGTGGCCTTCACTTAGCACCACTCATGTGACCTAGCTCG
ATTGTACACAT
Found at i:21319700 original size:49 final size:49
Alignment explanation
Indices: 21319600--21319728 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 49
21319590 ATCAAAGTCG
* *
21319600 ATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGGCCA
1 ATGCCATGTCCCAGACAAGTCTTACAATGACTCTCATATATCGAGGCCA
* * * * *
21319649 ATGTCGTGTCCCAGACAAGTCTTATAAT-AGCTCTCATCTATCG-GTGTCA
1 ATGCCATGTCCCAGACAAGTCTTACAATGA-CTCTCATATATCGAG-GCCA
* * *
21319698 ATGCCATGTCCCAGATAGGTCTTACACTGAC
1 ATGCCATGTCCCAGACAAGTCTTACAATGAC
21319729 ATACAACAAG
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
48 2 0.03
49 61 0.95
50 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAAGTCTTACAATGACTCTCATATATCGAGGCCA
Found at i:21321660 original size:43 final size:43
Alignment explanation
Indices: 21321507--21321664 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 43
21321497 CAATATCATA
* * * *
21321507 TCCCAGATATTGTCTTACATGTTATCAC-ATATCGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATA-CGATGCCAATG
* * ** *
21321550 CCCCAGAAATGGTCTTACACAAAATCA-TATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAAT-ACGATGCCAATG
*
21321593 TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATACGATGCCAATG
*
21321636 TCCCAGACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACGTAATCACA
21321665 TCTCGAAAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
43 95 0.97
44 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACAATACGATGCCAATG
Found at i:21324089 original size:49 final size:49
Alignment explanation
Indices: 21324027--21324154 Score: 143
Period size: 50 Copynumber: 2.6 Consensus size: 49
21324017 CAAGTCGATG
*
21324027 CCATGTCCCAGACATGGTCTTACACTAACTATTGTC-AT-CGAGGCCGACA
1 CCATGTCCCAGACATGGTCTTACACTAACTATTG-CAATCCG-GGCCAACA
* * * * * **
21324076 CCATGTCCTAGACATGGTCTAACACTAGCTCTTGCATATCCGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTAACTATTGCA-ATCCGGGCCAACA
21324126 CCATGTCCCAGACATGGTCTTACACTAAC
1 CCATGTCCCAGACATGGTCTTACACTAAC
21324155 ACATCTCATA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 1 0.02
49 30 0.46
50 32 0.49
51 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTAACTATTGCAATCCGGGCCAACA
Found at i:21324143 original size:50 final size:49
Alignment explanation
Indices: 21323977--21324290 Score: 169
Period size: 47 Copynumber: 6.6 Consensus size: 49
21323967 TATGATGACG
* * * * * *
21323977 ATGCCATGTCCCAAACATAGTCTTACACTAGCTCA-TGTC-TC-AAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACT-ATTGTCATCGAGGCCA
*
21324024 ATGCCATGTCCCAGACATGGTCTTACACTAACTATTGTCATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATTGTCATCGAGGCCA
** * * * * *
21324073 ACACCATGTCCTAGACATGGTCTAACACTAGCTCTTG-CATATCCG-TGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATTGTC--AT-CGAGGCCA
* * * *
21324123 ATGCCATGTCCCAGACATGGTCTTACACTAAC-ACATCTCAT--A-GTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTA-TTGTCATCGAGGCCA
* ** *
21324169 ATG-CATGTCCCTA-ACAT-GTCTTATACTGGCTTACCT-T-A-CGAGGCCA
1 ATGCCATGTCCC-AGACATGGTCTTACACTAAC-TA-TTGTCATCGAGGCCA
* * * * * * *
21324215 ATG-CATGTCCTAGACA-CGTCTTACACTAGCTCTTGTC-TCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATTGTCATCGAGGCCA
21324261 ATGCCATGTCCCAGACATGGTCTTACACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
21324291 GCTCACAATA
Statistics
Matches: 206, Mismatches: 39, Indels: 43
0.72 0.14 0.15
Matches are distributed among these distances:
44 12 0.06
45 17 0.08
46 44 0.21
47 46 0.22
48 14 0.07
49 37 0.18
50 33 0.16
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATTGTCATCGAGGCCA
Found at i:21328538 original size:204 final size:204
Alignment explanation
Indices: 21328187--21328593 Score: 534
Period size: 204 Copynumber: 2.0 Consensus size: 204
21328177 TTAACAATCA
** *
21328187 TGTAACACCCCTTACCCATATTCAATGCCAGAACAGGGTACGAGGCATTACCCGAACTTACAACA
1 TGTAACACCCCTTACCCATATTCAACACCAGAACAGGGTACGAGGCATTACCAGAACTTACAACA
*
21328252 CAAACAATCATACAATTTCGAGCCATAAATTTGCGTCCAAATTAAAATCATTTTCATCCAACCAT
66 CAAACAAACATACAATTTCGAGCCATAAATTTGCGTCCAAATTAAAATCATTTTCATCCAACCAT
* * * *
21328317 AAAGTCCCTAATATGAGCCTACGAGGCCCTAAACATGCTTTGGGAGTGG-TCTGGGACTAAACTG
131 AAAGTCCATAATATGAGCCTACGAGGCCCAAAACATGCTTTGGAAGTGGTTC-AGGACTAAAC-G
*
21328381 AGGACTTTAGT
194 AGAACTTTAGT
* ** * *
21328392 TGTAACACCCCTTACCCGTATTCAACACTGGAATAGGGTACGAGGCATTACTAG-ACTTATC-AC
1 TGTAACACCCCTTACCCATATTCAACACCAGAACAGGGTACGAGGCATTACCAGAACTTA-CAAC
* ** * ** * ** *
21328455 ACAAACAAACATACAATTTCGGGTTATAGATTTGTTTCCAAATTAAAA-CTTTTTGCATTTAATC
65 ACAAACAAACATACAATTTCGAGCCATAAATTTGCGTCCAAATTAAAATCATTTT-CATCCAACC
21328519 ATAAAGTCCATAATATGAGCCTACGAGGCCCAAAACATGCTTTGGAAGTGGTTCAGGACTAAACG
129 ATAAAGTCCATAATATGAGCCTACGAGGCCCAAAACATGCTTTGGAAGTGGTTCAGGACTAAACG
21328584 AGAACTTTAG
194 AGAACTTTAG
21328594 AAAATTTTAC
Statistics
Matches: 175, Mismatches: 24, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
203 15 0.09
204 111 0.63
205 49 0.28
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (204 bp):
TGTAACACCCCTTACCCATATTCAACACCAGAACAGGGTACGAGGCATTACCAGAACTTACAACA
CAAACAAACATACAATTTCGAGCCATAAATTTGCGTCCAAATTAAAATCATTTTCATCCAACCAT
AAAGTCCATAATATGAGCCTACGAGGCCCAAAACATGCTTTGGAAGTGGTTCAGGACTAAACGAG
AACTTTAGT
Found at i:21329037 original size:42 final size:42
Alignment explanation
Indices: 21328957--21329037 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
21328947 GTGCAAGGGA
* * *
21328957 CACACGGCCTAAACACATGCTCGTGGGGCAAGCTGTGTGTCG
1 CACACGGCCTAAACACACGCTCGTGGGGCAACCCGTGTGTCG
* * * *
21328999 CACACGGCCTAGACACACGCTCGTGTGTCTACCCGTGTG
1 CACACGGCCTAAACACACGCTCGTGGGGCAACCCGTGTG
21329038 GACAAAAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (42 bp):
CACACGGCCTAAACACACGCTCGTGGGGCAACCCGTGTGTCG
Found at i:21330416 original size:46 final size:47
Alignment explanation
Indices: 21330358--21330488 Score: 146
Period size: 47 Copynumber: 2.8 Consensus size: 47
21330348 ATTTGTTTGT
21330358 GAGCTAGTGTAAGACATGACTGGGACATGCATCGGCCACATT-AT-GA
1 GAGCTAGTGTAAGACATGACTGGGACATGCATCGGCC-CATTGATAGA
* * * *
21330404 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAG--CATTGATACGA
1 GAGCTAGTGTAAGA-CATGACTGGGACAT-GCATCGGCCCATTGATA-GA
21330452 GAGCTAGTGTAAGACATGTA-TGGGACATGCATCGGCC
1 GAGCTAGTGTAAGACATG-ACTGGGACATGCATCGGCC
21330489 TCAAGACATA
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
45 4 0.06
46 21 0.30
47 23 0.33
48 21 0.30
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGACTGGGACATGCATCGGCCCATTGATAGA
Found at i:21342565 original size:43 final size:42
Alignment explanation
Indices: 21342518--21342638 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 42
21342508 ATTAATGATG
* **
21342518 CCAATGTCTCTGACATGGTCTTACACATAATCACAATACAACA
1 CCAATGTCCCT-ACATGGTCTTACATGTAATCACAATACAACA
* * *
21342561 CCAATGTCCCAAACATGGTCTTACATGTAATCAAAATATAACA
1 CCAATGTCCC-TACATGGTCTTACATGTAATCACAATACAACA
21342604 CCAATGTCCCATACATGGTCTTACATGTAATCACA
1 CCAATGTCCC-TACATGGTCTTACATGTAATCACA
21342639 TCTCGGTAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.26
Consensus pattern (42 bp):
CCAATGTCCCTACATGGTCTTACATGTAATCACAATACAACA
Found at i:21348190 original size:23 final size:23
Alignment explanation
Indices: 21348147--21348190 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
21348137 TTATTAAAAT
* *
21348147 ATTAAATAAATGATAATTATCTA
1 ATTAAATAAATAATAAATATCTA
21348170 ATTAAAT-AATAATAAAATATC
1 ATTAAATAAATAAT-AAATATC
21348191 ACCAACATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (23 bp):
ATTAAATAAATAATAAATATCTA
Found at i:21348454 original size:30 final size:31
Alignment explanation
Indices: 21348387--21348456 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
21348377 CCACCCTTAA
* * * * *
21348387 AATATTTGCACTATTAGTCCTTCAACTTTTT
1 AATATTTACACTATTAATCCCTCAAATTTTG
*
21348418 CATATTTACACT-TTAATCCCTCAAATTTTG
1 AATATTTACACTATTAATCCCTCAAATTTTG
21348448 AATATTTAC
1 AATATTTAC
21348457 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (31 bp):
AATATTTACACTATTAATCCCTCAAATTTTG
Found at i:21350908 original size:46 final size:46
Alignment explanation
Indices: 21350846--21351070 Score: 308
Period size: 46 Copynumber: 4.9 Consensus size: 46
21350836 TTATCTTCGA
* * * * *
21350846 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** *
21350892 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
**
21350938 CACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
21350984 CATGTTACCATGGTATCTTTCAACCATGGTCTTACACATTTCACAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
21351030 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
21351071 GAATCGCGAC
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 158 0.98
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:21351025 original size:21 final size:21
Alignment explanation
Indices: 21351001--21351070 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 21
21350991 CCATGGTATC
21351001 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* * * *
21351022 TTTCACATCATGTTGCCATAGTATC-
1 TTTCA-ACCATG--GTCTTA-CA-CA
21351047 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
21351068 TTT
1 TTT
21351071 GAATCGCGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 1 0.03
21 9 0.26
22 9 0.26
24 9 0.26
25 6 0.17
26 1 0.03
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:21356196 original size:39 final size:39
Alignment explanation
Indices: 21356169--21356327 Score: 264
Period size: 39 Copynumber: 4.1 Consensus size: 39
21356159 TGTCCAGCAC
21356169 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
*
21356208 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
* * *
21356247 ATAGCCTGCGGACTTGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
* *
21356286 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
21356325 ATA
1 ATA
21356328 TATATTCACA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (39 bp):
ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
Found at i:21358163 original size:47 final size:47
Alignment explanation
Indices: 21358089--21358410 Score: 229
Period size: 47 Copynumber: 6.9 Consensus size: 47
21358079 GTCACATTAT
* *
21358089 GAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA
* * *
21358136 CGAGGGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCACATT-A-T
1 -GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG---CATTGAGA
* * * * *
21358183 GATAGCCATTGTAAGACCATGTTTGGGACATGGCATTAGCATTGAGA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA
* * * *
21358230 TGAGGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
1 -GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA
* * * *
21358276 CGTA-AGCCAGTGCT-AGA-CATGTCTGGGACAT-GCCTCGGC-TACGAGA
1 -G-AGAGCTAGTG-TAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGA
* * * * *
21358322 TGATAGTTAGTGTAAGACCATGTTTGGGAAATGGCATCA--ATATGATA
1 -GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGA
*
21358369 TATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
1 GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
21358411 CCTTACCCAT
Statistics
Matches: 217, Mismatches: 38, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
45 7 0.03
46 78 0.36
47 91 0.42
48 36 0.17
49 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA
Found at i:21358242 original size:94 final size:94
Alignment explanation
Indices: 21358081--21358265 Score: 325
Period size: 94 Copynumber: 2.0 Consensus size: 94
21358071 TTAGGGCTGT
21358081 CACATTATGAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAG
1 CACATTATGAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAG
*
21358146 TGTAAGACATGTTTGGGACATGCATCAGC
66 TGTAAGACATGTCTGGGACATGCATCAGC
* * * *
21358175 CACATTATGATAGCCATTGTAAGACCATGTTTGGGACATGGCATTAGCATTGAGATGAGGGCTAG
1 CACATTATGAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAG
21358240 TGTAAGACATGTCTGGGACATGCATC
66 TGTAAGACATGTCTGGGACATGCATC
21358266 GGCCTCGAGA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
CACATTATGAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAG
TGTAAGACATGTCTGGGACATGCATCAGC
Found at i:21358284 original size:94 final size:94
Alignment explanation
Indices: 21358092--21358410 Score: 296
Period size: 94 Copynumber: 3.4 Consensus size: 94
21358082 ACATTATGAG
21358092 AGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACATG
1 AGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACATG
* * *
21358157 TTTGGGACATGCATCAGCCACATTATGAT
66 TCTGGGACATGCATCAGCCACATGACGAT
* * *
21358186 AGCCATTGTAAGACCATGTTTGGGACATGGCATTAGCATTGAGATGAGGGCTAGTGTAAGACATG
1 AGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACATG
* *
21358251 TCTGGGACATGCATCGGCCTCGA-GACG-T
66 TCTGGGACATGCATCAGCCAC-ATGACGAT
* * * * * ** *
21358279 AAGCCAGTGCT-AGA-CATGTCTGGGACAT-GCCTCGGC-TACGAGATGATAGTTAGTGTAAGAC
1 -AGCCATTG-TAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGACGAGGGCTAGTGTAAGA-
* * * **
21358340 CATGTTTGGGAAATGGCATCA---ATATGATATAT
62 CATGTCTGGGACAT-GCATCAGCCACATGA-CGAT
* *
21358372 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
1 -AGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCA
21358411 CCTTACCCAT
Statistics
Matches: 184, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
90 1 0.01
91 3 0.02
92 24 0.13
93 37 0.20
94 111 0.60
95 8 0.04
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
AGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACATG
TCTGGGACATGCATCAGCCACATGACGAT
Found at i:21358391 original size:140 final size:141
Alignment explanation
Indices: 21358087--21358410 Score: 374
Period size: 140 Copynumber: 2.3 Consensus size: 141
21358077 CTGTCACATT
* * * * *
21358087 ATGAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGACGAGAGCCAGTGTAAG
* * * *
21358152 ACATGTTTGGGACATGCATCAGCCACATTATGATAGCCATTGTAAGACCATGTTTGGGACATGGC
66 ACATGTCTGGGACATGCATCAGCCACATGATGATAGCCAGTGTAAGACCATGTTTGGGAAATGGC
*
21358217 ATTAGCATTGAG
131 ATCA-CATTGAG
* * *
21358229 ATGAGGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCCAGTGCT-
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGACG-AGAGCCAGTG-TA
* * * **
21358290 AGACATGTCTGGGACATGCCTCGGCTACGA-GATGATAGTTAGTGTAAGACCATGTTTGGGAAAT
64 AGACATGTCTGGGACATGCATCAGCCAC-ATGATGATAGCCAGTGTAAGACCATGTTTGGGAAAT
*
21358354 GGCATCA-ATATGAT
128 GGCATCACAT-TGAG
21358368 AT-ATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
1 ATGA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
21358411 CCTTACCCAT
Statistics
Matches: 153, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
138 3 0.02
139 18 0.12
140 93 0.61
141 24 0.16
142 15 0.10
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (141 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGACGAGAGCCAGTGTAAG
ACATGTCTGGGACATGCATCAGCCACATGATGATAGCCAGTGTAAGACCATGTTTGGGAAATGGC
ATCACATTGAG
Found at i:21359604 original size:30 final size:30
Alignment explanation
Indices: 21359525--21359636 Score: 124
Period size: 31 Copynumber: 3.8 Consensus size: 30
21359515 TTAGTCTTGA
* *
21359525 CATAT-ACTGGGCCGAAGCCTTTCGTTTAA-
1 CATATCACTGGGCCGAAGCCTTTC-ATAAAT
*
21359554 CGAT-T-ACTAGGCCGAAGCCTTTCATAAAT
1 C-ATATCACTGGGCCGAAGCCTTTCATAAAT
*
21359583 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCC-TTTCATAAAT
*
21359614 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
21359637 ACTGTAAACG
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
28 5 0.07
29 21 0.30
30 17 0.24
31 28 0.39
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (30 bp):
CATATCACTGGGCCGAAGCCTTTCATAAAT
Found at i:21359707 original size:42 final size:44
Alignment explanation
Indices: 21359660--21359753 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
21359650 TGGCCCATAG
* ** *
21359660 GCCCATTTCAATATCACATG-TA-ATGGCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATACCAATGAATGTATGCAA
21359702 GCCCATTTCAATATCACATGAAATATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATACCAATGAATGTATGCAA
21359746 GCCCATTT
1 GCCCATTT
21359754 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 20 0.43
43 1 0.02
44 25 0.54
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (44 bp):
GCCCATTTCAATATCACATGAAATATACCAATGAATGTATGCAA
Done.