Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 70 of 373
Found at i:21359941 original size:26 final size:26
Alignment explanation
Indices: 21359898--21359995 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
21359888 CCTCTTTAAT
*
21359898 AACTGGGGTA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
21359923 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* **
21359949 AACTGGGGCATAAGCCATTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
21359975 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
21359996 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 9 0.14
26 56 0.86
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:21360946 original size:27 final size:27
Alignment explanation
Indices: 21360916--21361129 Score: 101
Period size: 27 Copynumber: 7.9 Consensus size: 27
21360906 GTAAATCTAC
*
21360916 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
21360943 AAACCAATGGTATATCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * *
21360971 AAAGTCAAGGGTATTTCTA-TAACTTTGT
1 AAA-CCAAGGGTATTTC-AGTAATTTTAT
** ** * *
21360999 AAA-TTAGGAGTATTTTGGTAAATTTAC
1 AAACCAAGG-GTATTTCAGTAATTTTAT
*** * * *
21361026 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
21361053 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
21361080 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
21361107 AAACTAAGGGTATTTTAGTAATT
1 AAACCAAGGGTATTTCAGTAATT
21361130 GTGTAAATCG
Statistics
Matches: 151, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 115 0.76
28 18 0.12
29 15 0.10
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:21361128 original size:54 final size:54
Alignment explanation
Indices: 21361008--21361129 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 54
21360998 TAAATTAGGA
* *
21361008 GTATTTTGGTAAATTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGG
1 GTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAAGG
* * *
21361062 GTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAAGG
1 GTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAAGG
*
21361116 GTATTTTAGTAATT
1 GTATTTTGGTAATT
21361130 GTGTAAATCG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAAGG
Found at i:21361145 original size:54 final size:52
Alignment explanation
Indices: 21361008--21361145 Score: 141
Period size: 54 Copynumber: 2.5 Consensus size: 52
21360998 TAAATTAGGA
* * *
21361008 GTATTTTGGTAAATTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGG
1 GTATTTTAGT-AATTT-TAAATCGAGGGTATTTCGGTAATTTCACAAACCAAGG
* * * * * *
21361062 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGG
1 GTATTTTAGTAATTTTA-AATCGA-GGGTATTTCGGTAATTTCACAAACCAAGG
21361116 GTATTTTAGTAATTGTGTAAATCGAGGGTA
1 GTATTTTAGTAATT-T-TAAATCGAGGGTA
21361146 AAACAGTAAT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
53 8 0.11
54 54 0.77
55 5 0.07
56 2 0.03
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (52 bp):
GTATTTTAGTAATTTTAAATCGAGGGTATTTCGGTAATTTCACAAACCAAGG
Found at i:21361307 original size:27 final size:27
Alignment explanation
Indices: 21361124--21361304 Score: 238
Period size: 27 Copynumber: 6.7 Consensus size: 27
21361114 GGGTATTTTA
* *
21361124 GTAATTGTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
21361151 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
21361178 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
21361205 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
21361232 ATAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
21361259 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
21361286 GTAATTCTATAAATC-AGGG
1 GTAATTCTGTAAATCGAGGG
21361305 GTACTTTGGA
Statistics
Matches: 135, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 3 0.02
27 132 0.98
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:21361334 original size:27 final size:27
Alignment explanation
Indices: 21361313--21361402 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
21361303 GGGTACTTTG
*
21361313 GAAATTTTACAAGTCGAAGGTATTTCA
1 GAAATTTTACAAATCGAAGGTATTTCA
* * *
21361340 GTAATTTTACAAATCGAGGGAATTTCA
1 GAAATTTTACAAATCGAAGGTATTTCA
* * * *
21361367 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GAAATTTTACAAATCGAA-GGTATTTCA
*
21361394 GTAATTTTA
1 GAAATTTTA
21361403 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.04
27 50 0.96
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
GAAATTTTACAAATCGAAGGTATTTCA
Found at i:21363710 original size:31 final size:31
Alignment explanation
Indices: 21363633--21363710 Score: 113
Period size: 30 Copynumber: 2.5 Consensus size: 31
21363623 TTTAACGATT
*
21363633 ACTAGGCCGAAGCCTTTTCATAAATTATATC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
* * *
21363664 ACT-GGGCAAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAATCATATC
21363694 ACTAGGCCGAAGCCTTT
1 ACTAGGCCGAAGCCTTT
21363711 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
30 26 0.65
31 14 0.35
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCATAAATCATATC
Found at i:21363781 original size:42 final size:43
Alignment explanation
Indices: 21363734--21363827 Score: 136
Period size: 42 Copynumber: 2.2 Consensus size: 43
21363724 TGGCCCATAG
* * *
21363734 GCCCATTTCAATATCACATGTAATGT-CAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATACAATGAATGTATGCAA
*
21363776 GCCCATTTCAGTATCACATGAAATATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATA-CAATGAATGTATGCAA
21363820 GCCCATTT
1 GCCCATTT
21363828 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 23 0.50
44 23 0.50
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (43 bp):
GCCCATTTCAATATCACATGAAATATACAATGAATGTATGCAA
Found at i:21364017 original size:26 final size:26
Alignment explanation
Indices: 21363972--21364173 Score: 289
Period size: 26 Copynumber: 7.8 Consensus size: 26
21363962 CCTCTTTAAT
21363972 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
21363997 AACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
21364023 AACTGGGGCGTAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
21364049 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
21364075 AACTGGGGCATAAGCCTTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
21364101 AACTGGGGCATAAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
21364127 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
21364153 AACTAGGGCATAAGTCCTTTT
1 AACTGGGGCATAAGCCCTTTT
21364174 GCACTTCCTC
Statistics
Matches: 160, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 10 0.06
26 150 0.94
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:21364051 original size:52 final size:52
Alignment explanation
Indices: 21363972--21364173 Score: 325
Period size: 52 Copynumber: 3.9 Consensus size: 52
21363962 CCTCTTTAAT
*
21363972 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
21364023 AACTGGGGCGTAAGCCCTTTTCGATAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
21364075 AACTGGGGCATAAGCCTTTTTCGGTAAACTGGGGCATAAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* * *
21364127 AACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGTCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
21364174 GCACTTCCTC
Statistics
Matches: 138, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
51 9 0.07
52 129 0.93
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:21365049 original size:27 final size:27
Alignment explanation
Indices: 21364976--21365032 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
21364966 GGGCATATTC
21364976 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
21365003 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
21365030 GTC
1 GTC
21365033 TTTTTACCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.30, G:0.23, T:0.30
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:21365124 original size:27 final size:27
Alignment explanation
Indices: 21365071--21365307 Score: 201
Period size: 27 Copynumber: 8.8 Consensus size: 27
21365061 TTTCATCCTA
* * *
21365071 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
21365098 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * * *
21365125 CAATGGTAGTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTA-TTTTGGTAA-TTTTACAAA-C
* * ** *
21365154 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
21365181 CAGGGGTA-TTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
21365207 TGA-GGTATTTCGGTAATTTAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
21365233 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
21365260 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
21365287 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
21365308 GTAAATCGAG
Statistics
Matches: 166, Mismatches: 38, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
25 4 0.02
26 30 0.18
27 103 0.62
28 19 0.11
29 10 0.06
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:21365331 original size:54 final size:54
Alignment explanation
Indices: 21365217--21365386 Score: 162
Period size: 54 Copynumber: 3.1 Consensus size: 54
21365207 TGAGGTATTT
* * * * ***
21365217 CGGTAATTTAACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTT
1 CGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGA-GGGTAAAA
* *
21365271 TGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAA
* * * * **** *
21365325 CAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAA
21365379 CGGTAATT
1 CGGTAATT
21365387 CTGTAAATCG
Statistics
Matches: 94, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 92 0.98
55 2 0.02
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.32
Consensus pattern (54 bp):
CGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAA
Found at i:21365358 original size:81 final size:80
Alignment explanation
Indices: 21365273--21365432 Score: 194
Period size: 81 Copynumber: 2.0 Consensus size: 80
21365263 GGGTATTTTG
* **** * *
21365273 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAATAATTCT-TA
21365338 AATCAAGGGTAAAACA
65 AATCAAGGGTAAAACA
* * * *
21365354 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTTAA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTTAA
* *
21365419 GTCGAGGGTAAAAC
66 ATCAAGGGTAAAAC
21365433 GATAATTATG
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
80 15 0.23
81 51 0.77
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (80 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTTAA
ATCAAGGGTAAAACA
Found at i:21365482 original size:27 final size:27
Alignment explanation
Indices: 21365299--21365479 Score: 233
Period size: 27 Copynumber: 6.8 Consensus size: 27
21365289 AGGGTATTTT
* *
21365299 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
21365326 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
21365353 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
21365380 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
21365407 AATAATTCT-TAAGTCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
21365433 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAAC
*
21365460 GGTAATTCTATAAATC-AGGG
1 AGTAATTCTATAAATCGAGGG
21365480 GTACTTTGGT
Statistics
Matches: 135, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
26 25 0.19
27 109 0.81
28 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:21365482 original size:80 final size:81
Alignment explanation
Indices: 21365300--21365479 Score: 258
Period size: 80 Copynumber: 2.2 Consensus size: 81
21365290 GGGTATTTTA
* * *
21365300 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACAGTAATTATATA
21365365 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * *
21365381 GTAATTCTGTAAATCGAGGGTAAAACAATAATTCT-TAAGTCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACAG-TAATTATAT
*
21365444 AAATCGGGGGTAAAACG
65 AAATCGAGGGTAAAACG
*
21365461 GTAATTCTATAAATC-AGGG
1 GTAATTCTGTAAATCGAGGG
21365480 GTACTTTGGT
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 5 0.06
80 52 0.58
81 33 0.37
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACAGTAATTATATA
AATCGAGGGTAAAACG
Found at i:21365509 original size:27 final size:27
Alignment explanation
Indices: 21365488--21365577 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
21365478 GGGTACTTTG
*
21365488 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
21365515 GTAATTTTACAAATCGAGGGAATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * **
21365542 GTATTTTTACAAA-CTAAGGGTATTTTG
1 GTAATTTTACAAATCGAA-GGTATTTCA
21365569 GTAATTTTA
1 GTAATTTTA
21365578 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.04
27 50 0.96
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:21365520 original size:107 final size:107
Alignment explanation
Indices: 21365261--21365534 Score: 259
Period size: 107 Copynumber: 2.5 Consensus size: 107
21365251 TTTACAAACT
* * * * *
21365261 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 AGGGGTAATTTGGTAATTTTACAATCGAA-GGTATTTCAGTAATTCTGTAAATCGAGGGTAAAAC
*
21365326 AGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAATC
65 AGTAATTATATAAATCAAGGGTAAAACAGTAATTCTATAAATC
*** * *** * *
21365369 -GAGGGTAAAACGGTAATTCTGTA-AATCGAGGGTAAAACAATAATTCT-TAAGTCGAGGGTAAA
1 AG-GGGTAATTTGGTAATT-T-TACAATCGAAGGTATTTCAGTAATTCTGTAAATCGAGGGTAAA
* ** *
21365431 AC-GATAATTATGTAAATCGGGGGTAAAACGGTAATTCTATAAATC
63 ACAG-TAATTATATAAATCAAGGGTAAAACAGTAATTCTATAAATC
* * **
21365476 AGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGG
1 AGGGGTAATTTGGTAATTTTACAA-TCGAAGGTATTTCAGTAATTCTGTAAATCGAGGG
21365535 AATTTCAGTA
Statistics
Matches: 127, Mismatches: 31, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
105 2 0.02
106 4 0.03
107 81 0.64
108 33 0.26
109 5 0.04
110 2 0.02
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.31
Consensus pattern (107 bp):
AGGGGTAATTTGGTAATTTTACAATCGAAGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACA
GTAATTATATAAATCAAGGGTAAAACAGTAATTCTATAAATC
Found at i:21367314 original size:21 final size:21
Alignment explanation
Indices: 21367289--21367328 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
21367279 TTGAATTGGC
*
21367289 CACACGGGCGTGTACCCCTTT
1 CACACGGGCATGTACCCCTTT
*
21367310 CACACGGGCATGTGCCCCT
1 CACACGGGCATGTACCCCT
21367329 ATGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CACACGGGCATGTACCCCTTT
Found at i:21367395 original size:11 final size:11
Alignment explanation
Indices: 21367381--21367405 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21367371 GAGTTGGTTT
21367381 TGAGTGATTTA
1 TGAGTGATTTA
21367392 TGAGTGATTTA
1 TGAGTGATTTA
21367403 TGA
1 TGA
21367406 TGTGTGTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (11 bp):
TGAGTGATTTA
Found at i:21384853 original size:42 final size:42
Alignment explanation
Indices: 21384770--21384854 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
21384760 CCATAGTATC
* * * **
21384770 ATAATTCATTTTATCACAGAGCTTACCACATTTTCCTCATTT
1 ATAATTCATTTCATCACAAAACTTACCACATTTTCAGCATTT
*
21384812 ATAATTCATTTCATCACAAAACTTACCTCA-TTTCAAGCATTT
1 ATAATTCATTTCATCACAAAACTTACCACATTTTC-AGCATTT
21384854 A
1 A
21384855 ATAAACATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
41 4 0.11
42 32 0.89
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.40
Consensus pattern (42 bp):
ATAATTCATTTCATCACAAAACTTACCACATTTTCAGCATTT
Found at i:21389953 original size:23 final size:23
Alignment explanation
Indices: 21389926--21389973 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
21389916 GAAAATTATC
21389926 CTTTTCAGCCATTTCAAGGCAAT
1 CTTTTCAGCCATTTCAAGGCAAT
21389949 CTTTTCAGCCATTTCAAGGCAAT
1 CTTTTCAGCCATTTCAAGGCAAT
21389972 CT
1 CT
21389974 CAAATAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (23 bp):
CTTTTCAGCCATTTCAAGGCAAT
Found at i:21391327 original size:25 final size:25
Alignment explanation
Indices: 21391293--21391345 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
21391283 AAATTTGCGT
21391293 CCAAAATAAAATCTTTCGCATTCAA
1 CCAAAATAAAATCTTTCGCATTCAA
*
21391318 CCAAAATAAAATCTTTTGCATTCAA
1 CCAAAATAAAATCTTTCGCATTCAA
21391343 CCA
1 CCA
21391346 TAAAGTCCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.43, C:0.25, G:0.04, T:0.28
Consensus pattern (25 bp):
CCAAAATAAAATCTTTCGCATTCAA
Found at i:21395782 original size:48 final size:48
Alignment explanation
Indices: 21395200--21395783 Score: 976
Period size: 48 Copynumber: 12.2 Consensus size: 48
21395190 ATATACACAC
* * * *
21395200 ATCTCCTACATATTTCACACTAGCCATTCGACTTT---ACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
21395245 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
21395293 ATCTCATATCTATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
21395341 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
21395389 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
21395437 ATCTCATACATATTTTACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
21395485 ATCTCATATATATTTTACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
21395533 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
21395581 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
21395629 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
21395677 ATCTCATACATATTTCACACTAGCCATTCTGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
21395725 ATCTCATATATATTTTACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
21395773 ATCTCATATAT
1 ATCTCATATAT
21395784 CAATTTCAGC
Statistics
Matches: 512, Mismatches: 24, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
45 33 0.06
48 479 0.94
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:21400056 original size:49 final size:49
Alignment explanation
Indices: 21399996--21400122 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 49
21399986 TGTTAAAGTC
* *
21399996 GATGCCGTGTCCTAGATAGGTCTTACACTGACTTTCATATATCGAG-GCT
1 GATGCCATGTCCTAGATAGGTCTTACACTGACTCTCATATATCG-GTGCT
* * * * *
21400045 GATGCCATGTCCCAAATAGGTCTTACACTGGCTCTCATCTATCGGTGTT
1 GATGCCATGTCCTAGATAGGTCTTACACTGACTCTCATATATCGGTGCT
*
21400094 GATGCCATGTCCTAGACAGGTCTTACACT
1 GATGCCATGTCCTAGATAGGTCTTACACT
21400123 AACACGCAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
48 1 0.01
49 66 0.99
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.31
Consensus pattern (49 bp):
GATGCCATGTCCTAGATAGGTCTTACACTGACTCTCATATATCGGTGCT
Found at i:21418420 original size:40 final size:40
Alignment explanation
Indices: 21418365--21418631 Score: 489
Period size: 40 Copynumber: 6.7 Consensus size: 40
21418355 AGCATTGGAT
*
21418365 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
21418405 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
21418445 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
21418485 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
21418525 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
21418565 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
21418605 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
21418632 ATGTGTTTGC
Statistics
Matches: 220, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:21428280 original size:47 final size:47
Alignment explanation
Indices: 21428219--21428519 Score: 496
Period size: 47 Copynumber: 6.4 Consensus size: 47
21428209 CAGCCAAGAC
21428219 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
21428266 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
21428313 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
21428360 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
21428407 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
21428454 AGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAA
* *
21428501 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
21428520 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
46 5 0.02
47 232 0.97
48 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:21428707 original size:37 final size:37
Alignment explanation
Indices: 21428642--21428716 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
21428632 GCTCTAAAGG
* *
21428642 CCCGATGACTACGTGTGGGAATTTTGT-CCGAGTAAGA
1 CCCGATAACTACGTGTGGGAATTATGTCCCG-GTAAGA
*
21428679 CCCGATAACTTCGTGT-GGAGATTATGTCCCGGTAAGA
1 CCCGATAACTACGTGTGGGA-ATTATGTCCCGGTAAGA
21428716 C
1 C
21428717 TTCGTAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 3 0.09
37 27 0.82
38 3 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGGAATTATGTCCCGGTAAGA
Found at i:21447337 original size:49 final size:49
Alignment explanation
Indices: 21447277--21447399 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 49
21447267 GTCGATGTCG
* * * *
21447277 TGTCCCGGACAGGTCTTACATTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGCCAATGCCA
* * * * *
21447326 TTTCCCAGACAGGCCTTACACTGGCTCTCATCTATCAGTGTCAATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCAATGCCA
21447375 TGTCCCAGACAGGTCTTACACTGAC
1 TGTCCCAGACAGGTCTTACACTGAC
21447400 ACATAAAAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 2 0.03
49 59 0.97
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCAATGCCA
Found at i:21456162 original size:14 final size:15
Alignment explanation
Indices: 21456136--21456165 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
21456126 CATCATAAAC
21456136 ATTGAATTTAACATA
1 ATTGAATTTAACATA
21456151 ATTGAA-TTAACATA
1 ATTGAATTTAACATA
21456165 A
1 A
21456166 CAATTTAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (15 bp):
ATTGAATTTAACATA
Found at i:21457183 original size:14 final size:13
Alignment explanation
Indices: 21457163--21457199 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
21457153 AATATTTGAC
21457163 TTGTTCTTAATTA
1 TTGTTCTTAATTA
21457176 TATGTTCTTAATTA
1 T-TGTTCTTAATTA
21457190 TTGTT-TTAAT
1 TTGTTCTTAAT
21457200 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:21469207 original size:63 final size:63
Alignment explanation
Indices: 21469102--21469223 Score: 154
Period size: 63 Copynumber: 1.9 Consensus size: 63
21469092 CTTAATACCA
* * * * * *
21469102 TGTAACACCCCTTACCTGAGACCATCGCCGGAGTTGAGCACGAGGCGTTACCTGACTTAGCTT
1 TGTAACACCCCGTACCTAAGACCATCGCCGGAGTCGAACACGAGGCGTTAACGGACTTAGCTT
* ** *
21469165 TGTAACGCCCCGTACCTAAGACCATTTCCGGAGTCGAACACGAGGTGTTAACGGACTTA
1 TGTAACACCCCGTACCTAAGACCATCGCCGGAGTCGAACACGAGGCGTTAACGGACTTA
21469224 ATTCATTACT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (63 bp):
TGTAACACCCCGTACCTAAGACCATCGCCGGAGTCGAACACGAGGCGTTAACGGACTTAGCTT
Found at i:21470586 original size:93 final size:93
Alignment explanation
Indices: 21470474--21470645 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
21470464 GCCCATAAGT
* *
21470474 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCAGACTCAACTCAA
21470539 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
21470567 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
21470632 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
21470646 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:21470641 original size:46 final size:46
Alignment explanation
Indices: 21470466--21470641 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
21470456 TGTAACCCGC
* * *
21470466 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
21470512 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* * *
21470562 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
21470605 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
21470642 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.62
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:21473076 original size:30 final size:30
Alignment explanation
Indices: 21473031--21473119 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
21473021 CAAAGATAAC
*
21473031 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
* *
21473060 GAGAAACCCGGAATAAAGAAATCCAAAATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
* * *
21473090 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
21473120 CGATACTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 7 0.14
30 38 0.76
31 5 0.10
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:21473119 original size:15 final size:15
Alignment explanation
Indices: 21473042--21473119 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
21473032 AGAAAACCGA
21473042 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
21473057 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
*
21473071 AATAAAGAAATCCAAA
1 -ATAAAGAAATCCAAG
* *
21473087 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
21473102 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
21473117 ATA
1 ATA
21473120 CGATACTATG
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
14 3 0.06
15 43 0.90
16 2 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:21476168 original size:93 final size:93
Alignment explanation
Indices: 21476056--21476228 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
21476046 CGCCCATAAC
* * *
21476056 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC
21476120 AAAGAGCTCGGATGCCTAGTTACATCTCA
65 AAAGAGCTCGGATGCCTAGTTACATCTCA
21476149 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
21476214 ACGAGTTCGGATGCC
66 AAGAGCTCGGATGCC
21476229 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
AAGAGCTCGGATGCCTAGTTACATCTCA
Found at i:21476219 original size:46 final size:46
Alignment explanation
Indices: 21476057--21476224 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
21476047 GCCCATAACC
* *
21476057 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGT
* * * * * * *
21476103 GAACTTGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCATAAGT
21476150 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGT
21476196 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
21476225 TGCCCAAATA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 56 0.57
47 29 0.30
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGT
Found at i:21476243 original size:46 final size:45
Alignment explanation
Indices: 21476100--21476243 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
21476090 CGCATCCATA
* * * * *
21476100 AGTGAACTTGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
21476148 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
21476193 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
21476239 AGTGA
1 AGTGA
21476244 CATGTCACTT
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.49
47 28 0.37
48 5 0.07
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:21478851 original size:23 final size:24
Alignment explanation
Indices: 21478813--21478857 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
21478803 TTTGCTCTTC
*
21478813 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
21478837 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
21478858 ACTTACCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:21479054 original size:53 final size:53
Alignment explanation
Indices: 21478928--21479177 Score: 180
Period size: 55 Copynumber: 4.7 Consensus size: 53
21478918 CGGGTACCTT
* * * * *
21478928 ACCATTGCCATGACTTGTCATGGTCTTACGTAGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTATGAAACTC
* *
21478977 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
1 ACCAATGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTATGAAACTC
* * *
21479030 ACCAATGCCATGCCTTAGCATGGTCTTACATAGG--GCCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGCCTT-GCATGGTCTTACAT-GGTATCC-TTGCCTTAT-GAAACTC
* * * *
21479085 ATCAATGCCATGTCTTG-ATGTGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTC
1 ACCAATGCCATGCCTTGCA--TGGTCTTACATGGTATCCTTGCCTTATGAAA-C-TC
*
21479140 -CCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCC
1 ACCAA-TGCCATGCCTT-GCATGGTCTTACATGGTATCC
21479178 CTAAACCCTA
Statistics
Matches: 162, Mismatches: 20, Indels: 32
0.76 0.09 0.15
Matches are distributed among these distances:
49 34 0.21
50 1 0.01
52 2 0.01
53 46 0.28
54 12 0.07
55 63 0.39
56 3 0.02
57 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGCCTTGCATGGTCTTACATGGTATCCTTGCCTTATGAAACTC
Found at i:21479116 original size:108 final size:110
Alignment explanation
Indices: 21478972--21479170 Score: 280
Period size: 108 Copynumber: 1.8 Consensus size: 110
21478962 ATCCTTTTGA
* *
21478972 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-C-TCACCA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTTC-CCA
21479034 A-TGCCATGCCTTAGCATGGTCTTACATAGGGCCTTTGCCTTATAGT
64 ATTGCCATGCCTTAGCATGGTCTTACATAGGGCCTTTGCCTTATAGT
* ** *
21479080 AACTTATCAATGCCATGTCTTGATGTGGTCTTACATGATTTCCTTGCCTTAGAAACCTTCCCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTCCCAAT
* *
21479145 TTCCATGCCTTGGCATGGTCTTACAT
66 TGCCATGCCTTAGCATGGTCTTACAT
21479171 GGTATCCCTA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 5 0.06
110 26 0.33
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTCCCAAT
TGCCATGCCTTAGCATGGTCTTACATAGGGCCTTTGCCTTATAGT
Found at i:21479127 original size:55 final size:52
Alignment explanation
Indices: 21478972--21479130 Score: 151
Period size: 53 Copynumber: 3.0 Consensus size: 52
21478962 ATCCTTTTGA
* * *
21478972 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGA-GTGGTCTTACATGATATCCTTGCCTTATG
* * ***
21479025 AACTCACCAATGCCATGCCTT-AGCATGGTCTTACAT-AGGGCCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGAG--TGGTCTTACATGATATCC-TTGCCTTAT-G
* *
21479079 TAACTTATCAATGCCATGTCTTGATGTGGTCTTACATGATTTCCTTGCCTTA
1 -AACTTACCAATGCCATGTCTTGA-GTGGTCTTACATGATATCCTTGCCTTA
21479131 GAAACCTTCC
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
52 3 0.04
53 38 0.45
54 1 0.01
55 37 0.44
56 4 0.05
57 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (52 bp):
AACTTACCAATGCCATGTCTTGAGTGGTCTTACATGATATCCTTGCCTTATG
Found at i:21483657 original size:6 final size:6
Alignment explanation
Indices: 21483627--21483863 Score: 148
Period size: 6 Copynumber: 38.3 Consensus size: 6
21483617 AAGAAACATT
* *
21483627 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
21483674 GTGACAGA ATTAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA
1 AT--CAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
21483721 AT-AGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
21483769 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAAA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
21483820 A-CATA ATTAGA ATCAGT ATCAGGTA AT-AGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
21483864 GTGAATGCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 46
0.71 0.11 0.18
Matches are distributed among these distances:
5 16 0.09
6 136 0.76
7 16 0.09
8 12 0.07
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:21483683 original size:19 final size:19
Alignment explanation
Indices: 21483659--21483835 Score: 119
Period size: 19 Copynumber: 8.8 Consensus size: 19
21483649 GAATCAGAAT
*
21483659 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
21483678 CAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGGTAA
21483697 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
*
21483722 TAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
21483739 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
21483759 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
21483784 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
21483801 CCAGAATCAAAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
* *
21483821 CATAATTAGAATCAG
1 CAGAATCAGAATCAG
21483836 TATCAGGTAA
Statistics
Matches: 125, Mismatches: 15, Indels: 36
0.71 0.09 0.20
Matches are distributed among these distances:
17 4 0.03
18 26 0.21
19 54 0.43
20 4 0.03
21 2 0.02
23 2 0.02
25 33 0.26
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:21483688 original size:25 final size:25
Alignment explanation
Indices: 21483653--21483863 Score: 135
Period size: 25 Copynumber: 8.7 Consensus size: 25
21483643 AAATGAGAAT
21483653 CAGAATCAGAATCAGAATCAGGT--
1 CAGAATCAGAATCAGAATCAGGTAA
* *
21483676 --G-A-CAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
21483697 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
21483722 TAGAATCAGAATCAGAACCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
*
21483745 TCAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
*
21483770 TCAGTATCAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* * *
21483795 TCAGAACCAGAATCAAAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
* * *
21483821 CATAATTAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
21483846 TAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
21483864 GTGAATGCAA
Statistics
Matches: 149, Mismatches: 27, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
19 15 0.10
20 1 0.01
21 1 0.01
23 5 0.03
24 15 0.10
25 108 0.72
26 4 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:21483744 original size:62 final size:62
Alignment explanation
Indices: 21483660--21483862 Score: 327
Period size: 62 Copynumber: 3.3 Consensus size: 62
21483650 AATCAGAATC
* *
21483660 AGAATCAGAATCAGGTGA-CAGAATTAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCA-G-AACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAAT
*
21483723 AGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAAT
* * *
21483785 AGAATCAGAATCAGAACCAGAATCAAAATTAGGTAACATAATTAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAAT
21483847 AGAATCAGAATCAGAA
1 AGAATCAGAATCAGAA
21483863 TGTGAATGCA
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
61 1 0.01
62 118 0.89
63 13 0.10
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (62 bp):
AGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAAT
Found at i:21483806 original size:37 final size:37
Alignment explanation
Indices: 21483759--21483835 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
21483749 AATTAGGTAA
* **
21483759 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAAAATCAGGTAACAGAATCAGAAT
* * *
21483796 CAGAACCAGAATCAAAATTAGGTAACATAATTAGAAT
1 CAGAACCAGAATCAAAATCAGGTAACAGAATCAGAAT
21483833 CAG
1 CAG
21483836 TATCAGGTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (37 bp):
CAGAACCAGAATCAAAATCAGGTAACAGAATCAGAAT
Found at i:21484128 original size:27 final size:26
Alignment explanation
Indices: 21484080--21484160 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
21484070 GCGAGGCTGC
*
21484080 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
21484107 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
21484133 CAAATATATATGTGGCGAAGCCACCAGA
1 C--AGATAT-TGTGACGAAGCCACCAGA
21484161 TTGCAGCGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 21 0.48
28 5 0.11
29 16 0.36
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:21484140 original size:98 final size:96
Alignment explanation
Indices: 21483967--21484179 Score: 374
Period size: 98 Copynumber: 2.2 Consensus size: 96
21483957 ACCACAGAAT
* *
21483967 TTGCAGCGAGACTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACCA
1 TTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCACCA
21484032 GAACATATATATATATGTGGTC-AAGCCACCAGA
66 GAACA-A-ATATATATGTGG-CGAAGCCACCAGA
21484065 TTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCACCA
1 TTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCACCA
21484130 GAACAAATATATATGTGGCGAAGCCACCAGA
66 GAACAAATATATATGTGGCGAAGCCACCAGA
21484161 TTGCAGCGAGGCTGCCAGA
1 TTGCAGCGAGGCTGCCAGA
21484180 ATGCTTCCTC
Statistics
Matches: 112, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
95 1 0.01
96 42 0.38
97 1 0.01
98 68 0.61
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (96 bp):
TTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCACCA
GAACAAATATATATGTGGCGAAGCCACCAGA
Found at i:21484435 original size:27 final size:27
Alignment explanation
Indices: 21484405--21484762 Score: 437
Period size: 27 Copynumber: 13.3 Consensus size: 27
21484395 GGGGTAAAAT
* * * *
21484405 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484432 GGTAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484459 AGCAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484486 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
21484513 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
21484540 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484567 GGTATTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484594 GGTAATCCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
21484621 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * ** *
21484648 AGTAATTTTACCCTGTAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484675 GGTATTTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
21484702 GATATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
21484729 GGTATTTCTACCCTACAAGCGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
21484756 GGTAATT
1 GGTAATT
21484763 TTGTAAATCG
Statistics
Matches: 290, Mismatches: 41, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 290 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:21484792 original size:81 final size:81
Alignment explanation
Indices: 21484409--21484762 Score: 482
Period size: 81 Copynumber: 4.4 Consensus size: 81
21484399 TAAAATGGTA
* * * * *
21484409 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGCAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
21484473 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
21484489 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
21484554 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * *
21484570 ATTTCTACCCTACAGGGGTATTTTGGTAATCCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* **
21484635 ATAGGGGTATTTTAGT
66 ACAGGGGTATTTCGGT
** * * *
21484651 AATTT-TACCCT-GTAGAGGTATTTCGGTATTTCTACCCTACAGAGGTATTTC-GATATTTCTAC
1 -ATTTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTAC
21484713 CCTACAGGGGTATTTCGGT
63 CCTACAGGGGTATTTCGGT
* *
21484732 ATTTCTACCCTACAAGCGTATTTTGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATT
21484763 TTGTAAATCG
Statistics
Matches: 239, Mismatches: 29, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
80 10 0.04
81 223 0.93
82 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:21484832 original size:27 final size:27
Alignment explanation
Indices: 21484749--21485114 Score: 256
Period size: 27 Copynumber: 13.6 Consensus size: 27
21484739 CCCTACAAGC
**
21484749 GTATTTTGGTAATTTTGTAAATCGAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
**** * * * *
21484776 GTAAAACGGTAATTCTATAAATCAATG
1 GTATTTTGGTAATTTTACAAATCGAGG
* *
21484803 GTACTTTGGTAATTTTACAAGTCGAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
*** * **
21484830 GTATTTCAATAATTTTATAGGTCGAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
** *
21484857 GTATTTCAGTAATTTCACAAATC-ATGG
1 GTATTTTGGTAATTTTACAAATCGA-GG
*
21484884 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTGGTAATTTTACAAATCGA-GG
* * *
21484911 GTATTTTGATAATTTTACAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
*
21484938 GTATTTTGGTAATTTTACAAA-CCAGGG
1 GTATTTTGGTAATTTTACAAATCGA-GG
* * * * *
21484965 GCATTTTGATAATTTTATAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
* *
21484992 GTATTTTAGTAATTTTACAAA-CCAGGG
1 GTATTTTGGTAATTTTACAAATCGA-GG
** * *
21485019 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGG
* *
21485046 GTATTTTAGTAATTTTACAAA-CCAGGG
1 GTATTTTGGTAATTTTACAAATCGA-GG
** * * *
21485073 GTATTTTGGTAATTTTGTAAACCAATG
1 GTATTTTGGTAATTTTACAAATCGAGG
21485100 GTATTTTGGTAATTT
1 GTATTTTGGTAATTT
21485115 GGTAAACTAA
Statistics
Matches: 272, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
26 8 0.03
27 256 0.94
28 8 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCGAGG
Found at i:21484913 original size:81 final size:80
Alignment explanation
Indices: 21484802--21485114 Score: 304
Period size: 81 Copynumber: 3.9 Consensus size: 80
21484792 ATAAATCAAT
* ** * * ** * **
21484802 GGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTATAGGTCGAGGGTATTTCAG
1 GGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAATAATTTTACA-AACAAGGGTATTTTGG
* *
21484866 TAATTTCACAAATCATG
64 TAATTTTACAAACCATG
* *
21484883 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAA-CAAGGGTATTTTGGT
*
21484948 AATTTTACAAACCAGG
65 AATTTTACAAACCATG
* * * * * *
21484964 GGCATTTTGATAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAA-CAAGGGTATTTTGGT
** *
21485029 AATTTTGTAAACCAAG
65 AATTTTACAAACCATG
* ** ** *
21485045 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAA-CAAGGGTATTTTGGT
21485110 AATTT
65 AATTT
21485115 GGTAAACTAA
Statistics
Matches: 194, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
81 193 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAACAAGGGTATTTTGGTA
ATTTTACAAACCATG
Found at i:21485121 original size:27 final size:27
Alignment explanation
Indices: 21484854--21485114 Score: 333
Period size: 27 Copynumber: 9.7 Consensus size: 27
21484844 TTATAGGTCG
** * *
21484854 AGGGTATTTCAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
21484881 TGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
21484908 GGGGTATTTTGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
21484935 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * * *
21484962 GGGGCATTTTGATAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
21484989 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
21485016 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
21485043 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
21485070 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
21485097 ATGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
21485115 GGTAAACTAA
Statistics
Matches: 200, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:21487269 original size:34 final size:34
Alignment explanation
Indices: 21487224--21487293 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
21487214 CAATGTCAAA
*
21487224 TATGCGGTAGGGCCTTAGCCCATCACTGTATCAG
1 TATGCGGTAGGGCATTAGCCCATCACTGTATCAG
* *
21487258 TATGCGTTAGGGCATTAGCCCATCACTGTATTAG
1 TATGCGGTAGGGCATTAGCCCATCACTGTATCAG
21487292 TA
1 TA
21487294 ATAGTCATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (34 bp):
TATGCGGTAGGGCATTAGCCCATCACTGTATCAG
Found at i:21487871 original size:20 final size:20
Alignment explanation
Indices: 21487843--21487887 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
21487833 CCATGTGTCG
*
21487843 CACATGGCCTACCTGGCCAT
1 CACACGGCCTACCTGGCCAT
* *
21487863 CACACGGCCTGCTTGGCCAT
1 CACACGGCCTACCTGGCCAT
21487883 CACAC
1 CACAC
21487888 AACCGTGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.42, G:0.20, T:0.18
Consensus pattern (20 bp):
CACACGGCCTACCTGGCCAT
Found at i:21489401 original size:9 final size:9
Alignment explanation
Indices: 21489387--21489418 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
21489377 TAAGTATAAA
21489387 AATTAACTG
1 AATTAACTG
21489396 AATTAACTG
1 AATTAACTG
*
21489405 AATTAACCG
1 AATTAACTG
21489414 AATTA
1 AATTA
21489419 CCAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (9 bp):
AATTAACTG
Found at i:21494297 original size:25 final size:25
Alignment explanation
Indices: 21494254--21494301 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
21494244 TTATAACGTG
* * *
21494254 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
21494279 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
21494302 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:21494385 original size:11 final size:11
Alignment explanation
Indices: 21494349--21494404 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
21494339 CATGTTATGT
21494349 ATGATATGCAC
1 ATGATATGCAC
* *
21494360 ATGACATG--T
1 ATGATATGCAC
21494369 ATGATATGCAC
1 ATGATATGCAC
*
21494380 ATGATATG--T
1 ATGATATGCAC
21494389 ATGATATGCAC
1 ATGATATGCAC
21494400 ATGAT
1 ATGAT
21494405 GTATTAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:21494404 original size:20 final size:20
Alignment explanation
Indices: 21494338--21494404 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
21494328 ATTTTGATAA
*
21494338 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
21494358 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
21494378 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
21494398 ACATGAT
1 ACATGAT
21494405 GTATTAATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:21494508 original size:24 final size:24
Alignment explanation
Indices: 21494454--21494558 Score: 140
Period size: 24 Copynumber: 4.4 Consensus size: 24
21494444 GAGGAAGTGA
21494454 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
21494478 -AAAGGGCTTATGCCCAAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
21494501 TAAAGGGCTTGTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
21494525 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
21494549 AAAAGAGGCT
1 AAAAG-GGCT
21494559 AGCCCTCCAG
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
23 21 0.30
24 46 0.65
25 4 0.06
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:21494801 original size:31 final size:31
Alignment explanation
Indices: 21494766--21494829 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
21494756 CGTTTACAGT
*
21494766 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
21494797 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
21494828 AA
1 AA
21494830 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:21501259 original size:13 final size:13
Alignment explanation
Indices: 21501241--21501272 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
21501231 TCTTCCATTT
21501241 TTTCTTCCTTCTC
1 TTTCTTCCTTCTC
21501254 TTTCTTCCTTCTC
1 TTTCTTCCTTCTC
21501267 TTTCTT
1 TTTCTT
21501273 TCAAACTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTCTTCCTTCTC
Found at i:21502467 original size:11 final size:11
Alignment explanation
Indices: 21502431--21502486 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
21502421 CATGGTATGT
21502431 ATGATATGCAC
1 ATGATATGCAC
* *
21502442 ATGACATG--T
1 ATGATATGCAC
21502451 ATGATATGCAC
1 ATGATATGCAC
*
21502462 ATGATATG--T
1 ATGATATGCAC
21502471 ATGATATGCAC
1 ATGATATGCAC
21502482 ATGAT
1 ATGAT
21502487 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:21502486 original size:20 final size:20
Alignment explanation
Indices: 21502420--21502486 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
21502410 ATTTTGATAA
*
21502420 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
21502440 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
21502460 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
21502480 ACATGAT
1 ACATGAT
21502487 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:21502567 original size:23 final size:23
Alignment explanation
Indices: 21502537--21502656 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
21502527 AGGAAGTGAA
21502537 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
21502560 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
21502583 AAAAGGGTTTATGCCTCAGTTATG
1 -AAAGGGCTTATGCCCCAGTTATT
21502607 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
21502630 AAAAGGGCTTTTGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
21502654 AAA
1 AAA
21502657 AGAGGCTAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 46 0.53
24 41 0.47
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:21502594 original size:24 final size:24
Alignment explanation
Indices: 21502536--21502677 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
21502526 GAGGAAGTGA
21502536 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
21502560 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
21502583 AAAAGGGTTTATGCCTCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
21502606 GAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
21502630 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
21502654 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
21502678 ATGATAAAAC
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
23 43 0.42
24 50 0.49
25 10 0.10
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:21502605 original size:47 final size:46
Alignment explanation
Indices: 21502536--21502656 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 46
21502526 GAGGAAGTGA
*
21502536 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGTTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
21502583 AAAAGGGTTTATGCCTCAGTTATGAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGTTTATGCC-CAGTTATTAAAGGGCTTATGCCCCAGTTATT
21502630 AAAAGGGCTTT-TGCCCTAGTTATTAAA
1 AAAAGGG-TTTATGCCC-AGTTATTAAA
21502657 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 3 0.04
47 62 0.91
48 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (46 bp):
AAAAGGGTTTATGCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:21502812 original size:24 final size:24
Alignment explanation
Indices: 21502770--21502881 Score: 156
Period size: 24 Copynumber: 4.7 Consensus size: 24
21502760 GTTGGAGAGT
*
21502770 CAGTTATT-AGAGGGCTTATGCCC
1 CAGTTATTAAAAGGGCTTATGCCC
**
21502793 CAGTTATTAAAAGGGCTTATGCTT
1 CAGTTATTAAAAGGGCTTATGCCC
21502817 CAGTTATT-AAAGGGCTTATGCCC
1 CAGTTATTAAAAGGGCTTATGCCC
*
21502840 CAGTTATTAAAAGGGCTTTTGCCC
1 CAGTTATTAAAAGGGCTTATGCCC
*
21502864 TAGTTATTAAAAGAGGCT
1 CAGTTATTAAAAG-GGCT
21502882 AGGCCTCTAG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 29 0.37
24 46 0.58
25 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (24 bp):
CAGTTATTAAAAGGGCTTATGCCC
Found at i:21502838 original size:47 final size:46
Alignment explanation
Indices: 21502769--21502874 Score: 167
Period size: 47 Copynumber: 2.3 Consensus size: 46
21502759 GGTTGGAGAG
*
21502769 TCAGTTATTAGAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGC
1 TCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGC
*
21502815 TTCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGC
1 -TCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGC
*
21502862 CCTAGTTATTAAA
1 TC-AGTTATTAAA
21502875 AGAGGCTAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.02
47 54 0.98
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (46 bp):
TCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGC
Found at i:21502930 original size:218 final size:218
Alignment explanation
Indices: 21502552--21502975 Score: 794
Period size: 218 Copynumber: 1.9 Consensus size: 218
21502542 GCTTATGCCC
*
21502552 CAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGTTTATGCCTCAGTTATGAAAGGGCTTA
1 CAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTCAGTTATGAAAGGGCTTA
21502617 TGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTATTAAAAGAGGCTAGGCCTCCAGTTATATGA
66 TGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTATTAAAAGAGGCTAGGCCTCCAGTTATATGA
*
21502682 TAAAACAGCTATGCTGCCAGTGGAGAGTTATGGCGGGGTGGGTTGAGTTAATCTCCACATGGTGT
131 TAAAACAACTATGCTGCCAGTGGAGAGTTATGGCGGGGTGGGTTGAGTTAATCTCCACATGGTGT
21502747 GTTGGTTGGTATGGTTGGAGAGT
196 GTTGGTTGGTATGGTTGGAGAGT
* * *
21502770 CAGTTATTAGAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCTTCAGTTATTAAAGGGCTTA
1 CAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTCAGTTATGAAAGGGCTTA
*
21502835 TGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTATTAAAAGAGGCTAGGCCTCTAGTTATATGA
66 TGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTATTAAAAGAGGCTAGGCCTCCAGTTATATGA
21502900 TAAAACAACTATGCTGCCAGTGGAGAGTTATGGCGGGGTGGGTTGAGTTAATCTCCACATGGTGT
131 TAAAACAACTATGCTGCCAGTGGAGAGTTATGGCGGGGTGGGTTGAGTTAATCTCCACATGGTGT
21502965 GTTGGTTGGTA
196 GTTGGTTGGTA
21502976 CGAGTGGAGA
Statistics
Matches: 200, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
218 200 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (218 bp):
CAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTCAGTTATGAAAGGGCTTA
TGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTATTAAAAGAGGCTAGGCCTCCAGTTATATGA
TAAAACAACTATGCTGCCAGTGGAGAGTTATGGCGGGGTGGGTTGAGTTAATCTCCACATGGTGT
GTTGGTTGGTATGGTTGGAGAGT
Found at i:21503124 original size:31 final size:31
Alignment explanation
Indices: 21503089--21503152 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
21503079 CGTTTACAGT
21503089 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
21503120 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
21503151 AA
1 AA
21503153 TATGGAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:21506450 original size:49 final size:51
Alignment explanation
Indices: 21506320--21506452 Score: 171
Period size: 51 Copynumber: 2.6 Consensus size: 51
21506310 TCTATTCTGA
* * *
21506320 GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCTGATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAACTTC
* * * * *
21506371 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAACTTC
*
21506420 GGTCGCATATGTAGTACTAAGTGCAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
21506453 TGCAAACCAG
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
49 28 0.41
50 2 0.03
51 39 0.57
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAACTTC
Found at i:21512773 original size:15 final size:15
Alignment explanation
Indices: 21512755--21512793 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
21512745 TGGATTCTCA
21512755 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
21512770 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
21512785 TATTCATGG
1 TA-TCATGG
21512794 CTTCTCTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.18, C:0.13, G:0.15, T:0.54
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:21515685 original size:49 final size:51
Alignment explanation
Indices: 21515557--21515691 Score: 202
Period size: 51 Copynumber: 2.7 Consensus size: 51
21515547 TCTATTGTGA
*
21515557 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTC
* * * * *
21515608 GATCACGTGTGTAGTACTAAGTGGAGGCTACTATGTTTACCGGATAA-TT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTC
21515657 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
21515692 CGAACCAGAT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
49 32 0.43
50 2 0.03
51 41 0.55
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTC
Found at i:21516589 original size:18 final size:18
Alignment explanation
Indices: 21516566--21516602 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
21516556 CCATTTCTTT
*
21516566 TAGTGTTGCTAGGTTAGC
1 TAGTGTTGCCAGGTTAGC
21516584 TAGTGTTGCCAGGTTAGC
1 TAGTGTTGCCAGGTTAGC
21516602 T
1 T
21516603 CAGGGTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.14, G:0.32, T:0.38
Consensus pattern (18 bp):
TAGTGTTGCCAGGTTAGC
Found at i:21526000 original size:9 final size:9
Alignment explanation
Indices: 21525986--21526037 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
21525976 GCTATGATAC
21525986 TTTTGAAGG
1 TTTTGAAGG
21525995 TTTTGAAGG
1 TTTTGAAGG
* *
21526004 TTTTGGGAGA
1 TTTT-GAAGG
21526014 TTTTGAAGG
1 TTTTGAAGG
*
21526023 TTTTGAAGA
1 TTTTGAAGG
21526032 TTTTGA
1 TTTTGA
21526038 GAGATTTCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 30 0.81
10 7 0.19
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (9 bp):
TTTTGAAGG
Found at i:21526019 original size:19 final size:18
Alignment explanation
Indices: 21525986--21526037 Score: 77
Period size: 19 Copynumber: 2.8 Consensus size: 18
21525976 GCTATGATAC
*
21525986 TTTTGAAGGTTTTGAAGG
1 TTTTGAAGATTTTGAAGG
*
21526004 TTTTGGGAGATTTTGAAGG
1 TTTT-GAAGATTTTGAAGG
21526023 TTTTGAAGATTTTGA
1 TTTTGAAGATTTTGA
21526038 GAGATTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (18 bp):
TTTTGAAGATTTTGAAGG
Found at i:21526026 original size:28 final size:28
Alignment explanation
Indices: 21525986--21526044 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
21525976 GCTATGATAC
* *
21525986 TTTTGAAGGTTTTGAAGGTTTTGGGAGA
1 TTTTGAAGGTTTTGAAGATTTTGAGAGA
21526014 TTTTGAAGGTTTTGAAGATTTTGAGAGA
1 TTTTGAAGGTTTTGAAGATTTTGAGAGA
21526042 TTT
1 TTT
21526045 CAAAATTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.46
Consensus pattern (28 bp):
TTTTGAAGGTTTTGAAGATTTTGAGAGA
Found at i:21526219 original size:13 final size:13
Alignment explanation
Indices: 21526201--21526246 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
21526191 TTATGATTGC
21526201 GTTGGGTAATTAG
1 GTTGGGTAATTAG
21526214 GTTGGGTAATTAG
1 GTTGGGTAATTAG
*
21526227 TTTGGGTAATT-G
1 GTTGGGTAATTAG
21526239 GATTGGGT
1 G-TTGGGT
21526247 TGGGTTGGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 1 0.03
13 29 0.97
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (13 bp):
GTTGGGTAATTAG
Found at i:21526262 original size:13 final size:13
Alignment explanation
Indices: 21526196--21526265 Score: 65
Period size: 13 Copynumber: 5.6 Consensus size: 13
21526186 AATTTTTATG
*
21526196 ATTGCGTTGGGTA
1 ATTGGGTTGGGTA
*
21526209 ATTAGGTTGGGTA
1 ATTGGGTTGGGTA
* *
21526222 ATTAGTTTGGGTA
1 ATTGGGTTGGGTA
*
21526235 ATTGGATTGGG--
1 ATTGGGTTGGGTA
21526246 -TTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
21526258 CTTGGGTT
1 ATTGGGTT
21526266 TAAATTTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
10 9 0.19
13 39 0.81
ACGTcount: A:0.16, C:0.03, G:0.40, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:21531082 original size:45 final size:45
Alignment explanation
Indices: 21531028--21531146 Score: 166
Period size: 45 Copynumber: 2.6 Consensus size: 45
21531018 TTCGTAAGGT
* * * **
21531028 CATAGCATCTTTTAGCTATGGTCTTACTCGTTAGAATCATGATGC
1 CATAACATCTTTCAGCTATGGTCTTACTCGATAGAATCATGATAA
*
21531073 CATAACATCTTTCAGCTATGGTCTTACTCGATAGAATCGTGATAA
1 CATAACATCTTTCAGCTATGGTCTTACTCGATAGAATCATGATAA
* *
21531118 CATAACGTCTTTCAGTTATGGTCTTACTC
1 CATAACATCTTTCAGCTATGGTCTTACTC
21531147 ATTTCTAGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (45 bp):
CATAACATCTTTCAGCTATGGTCTTACTCGATAGAATCATGATAA
Found at i:21531173 original size:45 final size:46
Alignment explanation
Indices: 21531124--21531241 Score: 141
Period size: 45 Copynumber: 2.6 Consensus size: 46
21531114 ATAACATAAC
** * *
21531124 GTCTTTCAGTTATGGTCTTACTCATTTCTAG-TATGGTGCCATAGT
1 GTCTTTCAACTATGGTCTTAATCATTTCTAGATATAGTGCCATAGT
* * * *
21531169 GTCTTTCAACTATGGTCTTATTTATTT-TTGATATAGTGTCATAGT
1 GTCTTTCAACTATGGTCTTAATCATTTCTAGATATAGTGCCATAGT
*
21531214 GTCTTTCAACTATGGTTTTAATCATTTC
1 GTCTTTCAACTATGGTCTTAATCATTTC
21531242 CTTCAAGCCA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.03
45 59 0.97
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.48
Consensus pattern (46 bp):
GTCTTTCAACTATGGTCTTAATCATTTCTAGATATAGTGCCATAGT
Found at i:21531320 original size:13 final size:13
Alignment explanation
Indices: 21531302--21531328 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21531292 CCAAAACAGC
21531302 AACTAATTGATTT
1 AACTAATTGATTT
21531315 AACTAATTGATTT
1 AACTAATTGATTT
21531328 A
1 A
21531329 TATATGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (13 bp):
AACTAATTGATTT
Found at i:21540836 original size:13 final size:13
Alignment explanation
Indices: 21540818--21540844 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21540808 AGATAGGTCT
21540818 AGGAACAAAAATA
1 AGGAACAAAAATA
21540831 AGGAACAAAAATA
1 AGGAACAAAAATA
21540844 A
1 A
21540845 TTGAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.15, T:0.07
Consensus pattern (13 bp):
AGGAACAAAAATA
Found at i:21541558 original size:18 final size:18
Alignment explanation
Indices: 21541535--21541570 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
21541525 TCATTCCCTA
21541535 AATATTTAATAAAAATAT
1 AATATTTAATAAAAATAT
21541553 AATATTTAATAAAAATAT
1 AATATTTAATAAAAATAT
21541571 TTACGTGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AATATTTAATAAAAATAT
Found at i:21544049 original size:30 final size:30
Alignment explanation
Indices: 21544015--21544075 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
21544005 TTCGCGAGCC
*
21544015 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
21544045 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
21544075 T
1 T
21544076 GAGTCCAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:21544858 original size:641 final size:641
Alignment explanation
Indices: 21543519--21547999 Score: 8259
Period size: 641 Copynumber: 7.0 Consensus size: 641
21543509 GGATGGAATT
* *
21543519 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTTGGCAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
*
21543584 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGAAAGCCATGGCTAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
* * *
21543649 GGTTTTCAAGCTTTCCAAGCTCAATAGTAAGTCCGTTCTAACCCCGTTTTTCAAGTTCTTTACGT
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
* **
21543714 TTTTTGAATCCTAGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
* * *
21543779 GAAAAATACCCATAGTTGAAATATGTTTATTTTGATGTTTTATGATAGAATATGAAGTTTTAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
* *
21543844 TATGTTAGGCAACTTGTGCTACTCGGTTTTGAGTGAAAAC-----G-A--G--TAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
*
21543899 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTTCCATAGAAGAGAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
* * *
21543964 TCAGCATGTCATAAAACATAAGAATAATGGATGAAGTTTAATTCGCGAGCCTAGGGGCAAAAGTG
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
* ** *
21544029 TAAATATGCAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTCCAGGACTGTTTTG
521 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
*
21544094 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGACCCCAGAAAACGAGA
586 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
*
21544150 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTTGGTAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
*
21544215 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGATAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
* *
21544280 GGTTTTCAAGCTTTCCAAGCTCAATAGTAAGTCTGTTCTAACCCCGTTTTTCAAGTTCTTTACGT
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
*
21544345 TTCTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
21544410 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
*
21544475 TATGTTAGACAACTTGTGCTACTCAATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
*
21544540 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGGTGCCATAGAAGAGAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
* * *
21544605 TCAACATGTCATAAAACATACGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGTAAAAGTG
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
*
21544670 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTACCAAAGTTTGAGTTAAGGACTGTCTTG
521 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
21544735 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
586 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
21544791 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
21544856 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
21544921 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACG-
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
21544985 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
*
21545050 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGTTAGAATATGAGGTTTTAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
21545115 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
21545180 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
21545245 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
21545310 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
521 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
*
21545375 AATAGTACATTAATTAAATAAGTAAAATACGATGTTTTAGATCCCAGAAAACGAGA
586 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
21545431 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
21545496 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
21545561 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACG-
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
21545625 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
*
21545690 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGTTAGAATATGAGGTTTTAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
21545755 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
21545820 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
21545885 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
21545950 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
521 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
21546015 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
586 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
21546071 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
21546136 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
21546201 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
*
21546266 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGAAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
*
21546331 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTGAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
21546396 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
21546461 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
*
21546526 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAATGTG
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
*
21546591 TAAATATGTAAAAGTTTAGGGACAAAATTATAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
521 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
21546656 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
586 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
21546712 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
21546777 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
21546842 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
*
21546907 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGAAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
*
21546972 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTGAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
21547037 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
21547102 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
* *
21547167 CCAACATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
21547232 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
521 TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
* *
21547297 AATAGTAAATTAATTAAATAAGTAAAATATGTTGTTTTAGATCCCAGAAAACGAGA
586 AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
21547353 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
1 TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
21547418 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
66 TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
* * *
21547483 GGTTTTCAAGCTTTCCAAGCTCAATTGTAAGTTTGTTCTAACCCCATTTTTCAAGTTCTTTACAT
131 GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
*
21547548 TTTTAGAATCCTGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
196 TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
* *
21547613 GAAAAATACCCATAGGTGAAATATGTTTATTTTGATGTTTTATGATAGAATATAAGGTTTTAAAT
261 GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
* * * *
21547678 TATGTTAGAAAACTTGTGCTACTCGGTTTTTAGTGAAAACGAGTAAAAGGGCTTAATCGGTAAAA
326 TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
* *
21547743 ATAGCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGACAAAAGTGA
391 ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
* **
21547808 TCAGCATGTCATAAAACATAAGAATAAGGGATGAAGTTTAATTCCCGAGCCTAAAGG-AAACAGT
456 TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAA-AGT
* *
21547872 GTAAATATGCAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTTTT
520 GTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTT
* * *
21547937 GAATAGTACATTAATTAAATAAGTAAAATATAATGTTTTAGATCCCAGAAAATGGGA
585 GAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
21547994 TTTGAA
1 TTTGAA
21548000 CCTAGAATGA
Statistics
Matches: 3759, Mismatches: 79, Indels: 14
0.98 0.02 0.00
Matches are distributed among these distances:
631 351 0.09
636 1 0.00
637 1 0.00
639 1 0.00
640 1273 0.34
641 2132 0.57
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (641 bp):
TTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTCGGTAATTAAAAGAAATAAAAAGGGAAAA
TAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCGAAATTAGCATGGGGGAAGCCATGGCTAG
GGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTTCTAACCCCATTTTTCAAGTTCTTTACGT
TTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGCAATAATTTAAGCTAGGGTTCATATTTG
GAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATGATAGAATATGAGGTTTTAAAT
TATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAAACGAGTAGAAGGGCTTAATCGGTAAAA
ATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTGA
TCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTTTAATTCCCGAGCCTAGGGGCAAAAGTG
TAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTGCCAAAGTTTGAGTTAAGGACTGTCTTG
AATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCAGAAAACGAGA
Found at i:21545354 original size:30 final size:30
Alignment explanation
Indices: 21545296--21545356 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21545286 TTCCCGAGCC
* *
21545296 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
21545326 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
21545356 T
1 T
21545357 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:21545994 original size:30 final size:30
Alignment explanation
Indices: 21545936--21545996 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21545926 TTCCCGAGCC
* *
21545936 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
21545966 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
21545996 T
1 T
21545997 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:21547276 original size:30 final size:30
Alignment explanation
Indices: 21547218--21547278 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21547208 TTCCCGAGCC
* *
21547218 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
21547248 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
21547278 T
1 T
21547279 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:21548734 original size:64 final size:66
Alignment explanation
Indices: 21548578--21548750 Score: 165
Period size: 68 Copynumber: 2.6 Consensus size: 66
21548568 TGGATGATAT
* * * * * *
21548578 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGCATACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGCAGACAAGAGAGCTACA
21548643 AG
65 AG
* * * * * *
21548645 ACATTATGATGTAGATAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGCAGACAAGAGAGCTAC
21548710 -AG
64 AAG
21548712 -GATATATGTAGCTAGGTCGCAT-G-TGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGGATG-A-TACTAAGTGCA
21548751 GGCTACTATG
Statistics
Matches: 86, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 25 0.29
65 3 0.03
66 1 0.01
67 5 0.06
68 48 0.56
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (66 bp):
AGATATATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGCAGACAAGAGAGCTACAA
G
Found at i:21555341 original size:43 final size:43
Alignment explanation
Indices: 21555293--21555414 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 43
21555283 ATCGAGATAT
* *
21555293 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-A
* * *
21555336 GATTACTTGTAAGACCATGTCTGGGACATAGGCATCGTTAATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATA
* * * *
21555379 GATTACGTGTAATACCTTGTCTGGGACAGTGGCATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATC
21555415 TATATGTGTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATA
Found at i:21557452 original size:118 final size:118
Alignment explanation
Indices: 21557244--21557482 Score: 451
Period size: 118 Copynumber: 2.0 Consensus size: 118
21557234 ATTATGCCTT
21557244 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
1 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
21557309 GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
66 GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
21557362 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
1 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
* * *
21557427 GAAGAGGATTTAATATGAGAGTTCTATGCCAATTTAACCACGCCGGATGCTTC
66 GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
21557480 TGT
1 TGT
21557483 AGTTCTTGTT
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 118 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (118 bp):
TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
Found at i:21565897 original size:79 final size:80
Alignment explanation
Indices: 21565766--21566008 Score: 336
Period size: 79 Copynumber: 3.1 Consensus size: 80
21565756 CGGATGATAA
* *
21565766 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTGACT
21565829 A-ATCCGGGCTAAGTCC
64 ATATCCGGGCTAAGTCC
*
21565845 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTGACTAT
21565910 ATCCGGGCTAAGTCC
66 ATCCGGGCTAAGTCC
* * * *
21565925 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCA-TTGAGCGAGT-AGCTA
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTGA-CTA
* *
21565988 TATCC-GGTTAAATCC
65 TATCCGGGCTAAGTCC
21566003 CGAAGG
1 CGAAGG
21566009 TACTTGGTTT
Statistics
Matches: 151, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
78 16 0.11
79 73 0.48
80 62 0.41
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTGACTAT
ATCCGGGCTAAGTCC
Found at i:21565981 original size:119 final size:118
Alignment explanation
Indices: 21565766--21566008 Score: 343
Period size: 119 Copynumber: 2.1 Consensus size: 118
21565756 CGGATGATAA
* *
21565766 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAA
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAA
* *
21565831 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
66 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCC
*
21565885 CGAAGGCATTTGTG-TGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCT-AC
1 CGAAGGCATTTGTGCT-AGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAG-TGAC
*
21565947 TATATCCGGGCTAAGTCCCGAAGGCA-TTGAGCGAGTAGCTATATCCGGTTAAATCC
63 TA-ATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGCTAAATCC
21566003 CGAAGG
1 CGAAGG
21566009 TACTTGGTTT
Statistics
Matches: 113, Mismatches: 6, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
118 19 0.17
119 70 0.62
120 24 0.21
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (118 bp):
CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAA
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGCTAAATCC
Found at i:21565992 original size:39 final size:40
Alignment explanation
Indices: 21565766--21566008 Score: 343
Period size: 40 Copynumber: 6.2 Consensus size: 40
21565756 CGGATGATAA
* *
21565766 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
21565806 CGAAGGCATTTGTGCTAGTGACTA-ATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
21565845 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21565885 CGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
21565925 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
21565965 CGAAGGCA-TTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
21566003 CGAAGG
1 CGAAGG
21566009 TACTTGGTTT
Statistics
Matches: 191, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 16 0.08
39 51 0.27
40 124 0.65
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:21583834 original size:27 final size:28
Alignment explanation
Indices: 21583804--21583863 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
21583794 TGTAATAATA
*
21583804 ATATATACACAAT-ATCGTATTTAA-AAT
1 ATATATACA-AATAATAGTATTTAAGAAT
* *
21583831 ATATATATATATAATAGTATTTAAGAAT
1 ATATATACAAATAATAGTATTTAAGAAT
21583859 ATATA
1 ATATA
21583864 CATAAGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.07
27 18 0.64
28 8 0.29
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (28 bp):
ATATATACAAATAATAGTATTTAAGAAT
Found at i:21584741 original size:15 final size:15
Alignment explanation
Indices: 21584721--21584759 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
21584711 TCTTGGTTTG
*
21584721 TTTTTGGGGTTAGTT
1 TTTTTGGGGTTAGGT
21584736 TTTTTGGGGTTAGGT
1 TTTTTGGGGTTAGGT
21584751 TTTTTGGGG
1 TTTTTGGGG
21584760 GGGCTTAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.00, G:0.38, T:0.56
Consensus pattern (15 bp):
TTTTTGGGGTTAGGT
Found at i:21585696 original size:77 final size:79
Alignment explanation
Indices: 21585523--21585739 Score: 257
Period size: 77 Copynumber: 2.8 Consensus size: 79
21585513 CGATATGTGA
* * *
21585523 CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTG---TTTTTTGAAAAATATAAATTGAAAAAT
1 CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTG-AAAAT
* * * *
21585585 ACCTCCGTGTGTAAT
65 ACCTCAGCGCGTAAG
*
21585600 CTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTG-AAGACAGAAATTGAAAATA
1 CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAATA
* *
21585663 GCTCAGCGCGTGAG
66 CCTCAGCGCGTAAG
** *
21585677 C-CAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAGACAGAAATTGAAAA
21585740 ACGAAAATTG
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
76 31 0.26
77 47 0.39
78 19 0.16
79 23 0.19
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (79 bp):
CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAATA
CCTCAGCGCGTAAG
Found at i:21585866 original size:74 final size:75
Alignment explanation
Indices: 21585743--21586047 Score: 326
Period size: 74 Copynumber: 3.9 Consensus size: 75
21585733 TTGAAAAACG
* *
21585743 AAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 AAAATTGAAATTACCTCGGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
21585808 TTTTGACAACA
65 TTTTGACAACA
* * *
21585819 AAAATTGAAATTACCTCTGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
1 AAAATTGAAATTACCTCGGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
* **
21585883 TTTAAAAGGTAGAATTG
66 TTT-----G-ACAA-CA
** * *
21585900 AAAACGGAAATTGAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTT
1 AAAATTGAAA-T----TACCTCGGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
21585965 GATTTTTTTGACAACA
60 GATTTTTTTGACAACA
* * * *
21585981 GAAATTGAAATTACCTCAGTGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAAATTGAAATTACCTCGGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
21586045 TTT
66 TTT
21586048 TTGAAAGGCA
Statistics
Matches: 189, Mismatches: 26, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
74 80 0.42
76 33 0.17
79 1 0.01
80 4 0.02
81 15 0.08
82 4 0.02
83 1 0.01
86 12 0.06
88 39 0.21
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (75 bp):
AAAATTGAAATTACCTCGGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:21585956 original size:162 final size:164
Alignment explanation
Indices: 21585581--21586137 Score: 791
Period size: 162 Copynumber: 3.4 Consensus size: 164
21585571 ATAAATTGAA
* * * * * * *
21585581 AAATACCTCCGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-
1 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGAC
* * * *
21585645 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
65 A-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
21585709 CAATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
126 CGA-TTTTTTTTGAAAGGCAG-AATTGAAAAACGGAAATTG
21585750 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 -AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
21585815 AACAAAAATTGAAATTACCTCTGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-
65 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
* *
21585879 TTTTTTTAAAAGGTAGAATTG-AAAACGGAAATTG
130 TTTTTTTGAAAGGCAGAATTGAAAAACGGAAATTG
*
21585913 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACA
1 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACA
* *
21585978 ACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
66 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-T
21586043 TTTTTTTGAAAGGCAGAATTGAAAAAC-GAAATTG
130 TTTTTTTGAAAGGCAGAATTGAAAAACGGAAATTG
* * *
21586077 AAATACCTCGGCGTGTGACCTGAGACTCAACTTGCCTCTCGCAATACGGGTTGATTTTTTT
1 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
21586138 TGAAAATACC
Statistics
Matches: 354, Mismatches: 28, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
162 123 0.35
163 12 0.03
164 88 0.25
165 19 0.05
166 2 0.01
167 36 0.10
169 26 0.07
170 48 0.14
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (164 bp):
AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACA
ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATT
TTTTTTGAAAGGCAGAATTGAAAAACGGAAATTG
Found at i:21586266 original size:70 final size:67
Alignment explanation
Indices: 21586141--21586665 Score: 384
Period size: 61 Copynumber: 7.9 Consensus size: 67
21586131 TTTTTTTTGA
* ** **
21586141 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC-ATATGAGTTGAATTTTGAAACAGA
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT--AACA-A
21586205 AATTG
63 AATTG
* * **
21586210 AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACATCTCGTAATATGAGTTG-ATTTT-----TT
1 AAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTAACAAAA
*
21586269 TTT
65 TTG
* * **
21586272 AAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-CAT-ACAAAAA
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTAAC-AAAA
21586335 TTG
65 TTG
*
21586338 ACAATACCTCA-CGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT------T
1 A-AATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTAACAAAA
21586395 TTG
65 TTG
* *
21586398 AAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAA-AA
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA--TTTT-AACAA
21586462 CGAAGTTG
63 --AA-TTG
* * *
21586470 AAAAACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAA
1 AAATACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTT----AA
21586535 CAGAAATTG
60 CA-AAATTG
* * *
21586544 AAAATACCTCAGCGTGT----AAGC-CAACTCATCTCTCGCAATAT-AGTTGATTTTTGAAAAAC
1 -AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT----AAC
21586603 AGAAATTG
61 A-AAATTG
* * * *
21586611 AAAACACCTCAGCATGT---GAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTT
1 -AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
21586666 GAAAAACATA
Statistics
Matches: 383, Mismatches: 39, Indels: 67
0.78 0.08 0.14
Matches are distributed among these distances:
59 9 0.02
60 8 0.02
61 80 0.21
62 6 0.02
63 4 0.01
65 35 0.09
66 8 0.02
67 43 0.11
68 9 0.02
69 40 0.10
70 50 0.13
71 10 0.03
72 21 0.05
73 36 0.09
74 3 0.01
75 19 0.05
76 1 0.00
77 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (67 bp):
AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTAACAAAAT
TG
Found at i:21586310 original size:61 final size:61
Alignment explanation
Indices: 21586074--21586528 Score: 385
Period size: 61 Copynumber: 7.0 Consensus size: 61
21586064 AAAAACGAAA
* * ** * *
21586074 TTGAAATACCTCGGCGTGTGACCTGAGACTCAACTTGCCTCTCGCAATACGGGTTGATTTTTT
1 TTGAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * **
21586137 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC-ATATGAGTTGAATTTTGAAA
1 TTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTT----
**
21586201 CAGAAA
60 ----TT
* * *
21586207 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACATCTCGTAATATGAGTTGATTTTTT
1 TTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * ****
21586269 TTTAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAACATACAAAA
1 TTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG---AT--TTTT
*
21586334 A
61 T
*
21586335 TTGACAATACCTCA-CGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 TTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
21586395 TTGAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTT
1 TTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTT
*
21586457 GAAAACGAAGTTGAAAAACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 ----------TTGAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
21586522 ATTTTTT
55 ATTTTTT
21586529 GACAAACAGA
Statistics
Matches: 318, Mismatches: 42, Indels: 55
0.77 0.10 0.13
Matches are distributed among these distances:
59 9 0.03
60 10 0.03
61 84 0.26
62 35 0.11
63 3 0.01
64 16 0.05
65 32 0.10
66 9 0.03
67 9 0.03
69 3 0.01
70 39 0.12
71 10 0.03
72 24 0.08
73 35 0.11
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (61 bp):
TTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
Found at i:21586320 original size:132 final size:132
Alignment explanation
Indices: 21586066--21586528 Score: 579
Period size: 126 Copynumber: 3.5 Consensus size: 132
21586056 CAGAATTGAA
* * * ** * *
21586066 AAAC-GAAATTGAAATACCTCGGCGTGTGACCTGAGACTCAACTTGCCTCTCGCAATACGGGTTG
1 AAACAGAAATTGAAATACCTCAGCGTGT-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * **
21586130 ATTTTTTTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC-ATATGAGTTGAAT
65 ATTTTTTTT-AAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
21586194 TTTG
129 TTTG
* *
21586198 AAACAGAAATTGAAATTACCTCAGCGTGT-CCCGAGGCTCAACTCACATCTCGTAATATGAGTTG
1 AAACAGAAATTGAAA-TACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
21586262 ATTTTTTTTTAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA--
65 ATTTTTTTTAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
*
21586325 --C
130 TTG
* *
21586326 ATACAAAAATTGACAATACCTCA-CGTGT--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGAAATTGA-AATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
21586388 AATTTTTTTGAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
65 ATTTTTTTTAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA--
21586453 TTTTG
128 TTTTG
* * *
21586458 AAA-ACGAAGTTGAAAAACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACA-GAAATTGAAATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
21586522 ATTTTTT
65 ATTTTTT
21586529 GACAAACAGA
Statistics
Matches: 288, Mismatches: 29, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
126 93 0.32
127 5 0.02
128 18 0.06
129 2 0.01
131 44 0.15
132 65 0.23
133 10 0.03
134 51 0.18
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
AAACAGAAATTGAAATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
TG
Found at i:21586638 original size:69 final size:70
Alignment explanation
Indices: 21586416--21586883 Score: 417
Period size: 67 Copynumber: 6.6 Consensus size: 70
21586406 CAGCGCGTCC
*
21586416 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTG-AAAAC-GAAGTTGAAAAACCTC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTGAAAAACAGAAATTGAAAAACCTC
21586479 AGCGTG
65 AGCGTG
*
21586485 TACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAAATA
1 ----TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA-A
21586550 CCTCAGCGTG
61 CCTCAGCGTG
* *
21586560 T-AAGC-CAACTCATCTCTCGCAATAT-AGTTGA-TTTTTGAAAAACAGAAATTGAAAACACCTC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA-ACCTC
*
21586621 AGCATG
65 AGCGTG
* *
21586627 TGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAGCAGAAATT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATT-----G-AA--
* ** *
21586691 GAAATACTCAATGTCT
58 -AAA-CCTCAGCGT-G
* * *
21586707 TGAGGCTCAACT-ACCTCTCGCAATATGAGTTGA-TTTTTG----A-TGAAAATGAAAATGCCTC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA-ACCTC
** *
21586765 AATGTACT
65 AGCGT--G
* ** *
21586773 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAATTGAAATTACCTC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA-AACCTC
*
21586838 AGCGTCT
65 AGCGT-G
*
21586845 TGAGG-TCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
21586884 TAAACAAAAT
Statistics
Matches: 338, Mismatches: 30, Indels: 56
0.80 0.07 0.13
Matches are distributed among these distances:
65 10 0.03
66 13 0.04
67 55 0.16
68 16 0.05
69 38 0.11
70 27 0.08
71 34 0.10
72 16 0.05
73 53 0.16
74 14 0.04
75 13 0.04
76 2 0.01
78 1 0.00
79 34 0.10
80 12 0.04
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (70 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAACCTCA
GCGTG
Found at i:21586656 original size:138 final size:138
Alignment explanation
Indices: 21586423--21586897 Score: 404
Period size: 138 Copynumber: 3.4 Consensus size: 138
21586413 TCCTGAGGCT
* *
21586423 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAACGAAGTTGAAAAACCTCAGCGTGTAC
1 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAACGAAATTGAAAAACCTCAGCATG---
*
21586488 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAAATACCT
63 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCT
21586553 CAGCGTGTAAGC
127 CAGCGTGTAAGC
*
21586565 CAACTCATCTCTCGCAATAT-AGTTG-A-TTTTTGAAAAACAGAAATTGAAAACACCTCAGCATG
1 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTG-AAAAC-GAAATTGAAAA-ACCTCAGCATG
* *
21586627 -TGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATT
63 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--G-A-AAA-T
* * *
21586691 GAAATACTCAATGTCTTG-AGGC
123 ---A-CCTC-A-G-CGTGTAAGC
* * *
21586713 TCAACT-ACCTCTCGCAATATGAGTTG-A-TTTTTG---ATGAAAATGAAAATGCCTCA--ATGT
1 -CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAACGAAATTGAAAA-ACCTCAGCATG-
* ** *
21586770 ACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAATTGAAATTAC
63 -C-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATAC
* * *
21586835 CTCAGCGTCTTGAGGT
125 CTCAGCGT-GT-AAGC
* * *
21586851 CAACTCACCTCTCGCAATATGAGCTG-ATTTTTT-TAAACAAAATTGAA
1 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAACGAAATTGAA
21586898 TTAAAAACAG
Statistics
Matches: 275, Mismatches: 28, Indels: 61
0.76 0.08 0.17
Matches are distributed among these distances:
135 2 0.01
136 1 0.00
137 23 0.08
138 59 0.21
139 13 0.05
140 7 0.03
141 26 0.09
142 34 0.12
143 2 0.01
144 16 0.06
145 3 0.01
146 35 0.13
147 17 0.06
148 17 0.06
149 20 0.07
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (138 bp):
CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAACGAAATTGAAAAACCTCAGCATGCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
GTGTAAGC
Found at i:21586828 original size:217 final size:232
Alignment explanation
Indices: 21586494--21587143 Score: 677
Period size: 217 Copynumber: 2.8 Consensus size: 232
21586484 GTACCTGAGG
* *
21586494 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGACAAACAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGA-AAGCAGAAATTGAAAATACCTCA-CA
* * * *
21586558 TGT----AAGC-CAACTCATCTCTCGCAATAT-AGTTGA-TTTTTGAAAAACAGAAATTGAAAAC
64 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAAT
* * *
21586616 ACCTCAGCATGTGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAA-AACA-TAAAT
129 ACCTCAGCGTGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTAAAT
* * * ** *
21586679 T-GAGCAGAAATTGAAA-TA-CTC-A-ATGT-CTTGAGG
194 TAAAACAGAAATTGAAAGGACCTCGACATGTGCCCGAGA
* *
21586712 CTCAACT-ACCTCTCGCAATATGAGTTGA-T-TTTTG-ATG-A-AAA-TGAAAATGCCTCA-ATG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAGCAGAAATTGAAAATACCTCACATG
** * * *
21586769 TACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAATTGAAATTA
66 T-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATA
* * * *
21586834 CCTCAGCGTCTTGAGG-TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAACAAAATTGAA
130 CCTCAGCGT-GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACAAAATTAAA
* *
21586898 TTAAAAACAGAATTTGAAAGGACCTCGACGTGTGGCCCGAGA
193 TT-AAAACAGAAATTGAAAGGACCTCGACATGT-GCCCGAGA
*
21586940 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTG-AAAGCAGAAATTGAAAATACCTCA-CA
* *
21587005 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAATAGAATTTGAAA
64 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT--TAAAAACAGAAATTGAAA
*
21587070 ATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAACAAAA
127 ATACCTCAGCGTG---TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAC-AAA
21587134 ATTGAAATTA
187 ATT-AAATTA
21587144 CCTCAGCATC
Statistics
Matches: 352, Mismatches: 41, Indels: 54
0.79 0.09 0.12
Matches are distributed among these distances:
209 3 0.01
211 12 0.03
212 3 0.01
213 1 0.00
214 3 0.01
215 19 0.05
216 12 0.03
217 77 0.22
218 20 0.06
219 3 0.01
220 5 0.01
222 12 0.03
223 1 0.00
224 3 0.01
225 1 0.00
226 3 0.01
228 11 0.03
229 21 0.06
230 1 0.00
231 5 0.01
233 2 0.01
234 1 0.00
235 3 0.01
236 12 0.03
237 39 0.11
238 3 0.01
239 25 0.07
240 5 0.01
241 8 0.02
242 34 0.10
243 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (232 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAGCAGAAATTGAAAATACCTCACATG
TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATAC
CTCAGCGTGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTAAATTA
AAACAGAAATTGAAAGGACCTCGACATGTGCCCGAGA
Found at i:21586883 original size:71 final size:69
Alignment explanation
Indices: 21586683--21586897 Score: 257
Period size: 71 Copynumber: 3.2 Consensus size: 69
21586673 ATAAATTGAG
21586683 CAGAAATTGAAATA-CTCAATGTCTTGAGGCTCAACT-ACCTCTCGCAATATGAGTTGA--TTTT
1 CAGAAATTGAAATACCTCAATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
21586744 T-GA
66 TAAA
* * * *
21586747 -TGAAAATGAAAATGCCTCAATGTACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CAGAAATTG-AAATACCTCAATGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
21586811 TTTTAAAA
63 TTTT-AAA
** *
21586819 CAGAAATTGAAATTACCTCAGCGTCTTGAGG-TCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 CAGAAATTGAAA-TACCTCAATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
21586883 TTAAA
65 TTAAA
21586888 CA-AAATTGAA
1 CAGAAATTGAA
21586898 TTAAAAACAG
Statistics
Matches: 129, Mismatches: 11, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
63 6 0.05
64 4 0.03
65 8 0.06
66 13 0.10
67 21 0.16
68 8 0.06
69 5 0.04
70 12 0.09
71 27 0.21
72 11 0.09
73 14 0.11
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (69 bp):
CAGAAATTGAAATACCTCAATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TAAA
Found at i:21587030 original size:75 final size:73
Alignment explanation
Indices: 21586901--21587212 Score: 339
Period size: 76 Copynumber: 4.2 Consensus size: 73
21586891 AATTGAATTA
* ** *
21586901 AAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAG
21586965 TTGATTCTTTTG
63 TTGATT-TTTTG
21586977 AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
21587042 GATTTTTTG
65 GATTTTTTG
* * * *
21587051 ATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 ---AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
21587116 TTGA--TTTTG
63 TTGATTTTTTG
* * * * ** * *
21587125 ACAACAAAAATTGAAATTACCTCAGC--ATCTTGAGGCTCAACTCGCTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
21587188 ATTTTTTTG
66 A-TTTTTTG
* *
21587197 -AAACATAAATTAAAAA
1 AAAACAGAAATTGAAAA
21587213 AATAAAAATT
Statistics
Matches: 206, Mismatches: 22, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
69 34 0.17
71 32 0.16
72 5 0.02
74 10 0.05
75 37 0.18
76 62 0.30
77 25 0.12
78 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:21587096 original size:76 final size:76
Alignment explanation
Indices: 21586940--21587443 Score: 440
Period size: 76 Copynumber: 6.4 Consensus size: 76
21586930 TGGCCCGAGA
**
21586940 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTG--AAAAGCAGAAATTGAAAATACCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGATAAAAATAGAAATTGAAAATACCTCAG
*
21587003 CGTGTCCCGAGG
65 CGTGTCCTGAGG
* *
21587015 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAATAGAATTTGAAAATATCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAATAGAAATTGAAAATACCTCAGC
21587080 GTGTCCTGAGG
66 GTGTCCTGAGG
* * *
21587091 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGA-CAACA-A-AAATTGAAATTACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAATAGAAATTGAAAATACCTCAGC
* *
21587151 --ATCTTGAGG
66 GTGTCCTGAGG
* * *
21587160 CTCAACTCGCTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAATAAAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG--------A-T--AAAAATAGAAATTGA
21587225 AAATACCTCAGCGTGTCCTGAGG
54 AAATACCTCAGCGTGTCCTGAGG
*
21587248 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGATTAAAAGTAGAAATTGAAAACA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----T-GA-TAAAAATAGAAATTG-----A
* * *
21587313 GAAATTAAAATCCTCGGCGTGCCCCGAGG
54 -AAA-T---A-CCTCAGCGTGTCCTGAGG
* * *
21587342 CTCAGCTCACCTCTCGCAATATGAGTTGA-TTTTTGA-AAAGCAT--AAATTGAAATTACCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAA-AATAGAAATTGAAAATACCTCAG
21587403 CGTGTCCTGAGG
65 CGTGTCCTGAGG
*
21587415 CTCAACTCACCTCTCACAATATGAGTTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGA
21587444 GGATTTTTCT
Statistics
Matches: 355, Mismatches: 35, Indels: 80
0.76 0.07 0.17
Matches are distributed among these distances:
69 34 0.10
71 16 0.05
72 6 0.02
73 45 0.13
74 12 0.03
75 31 0.09
76 62 0.17
77 1 0.00
78 2 0.01
79 1 0.00
80 1 0.00
83 12 0.03
84 9 0.03
85 7 0.02
86 19 0.05
87 7 0.02
88 36 0.10
89 3 0.01
90 1 0.00
92 1 0.00
93 6 0.02
94 43 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAATAGAAATTGAAAATACCTCAGC
GTGTCCTGAGG
Found at i:21587258 original size:233 final size:244
Alignment explanation
Indices: 21586985--21587443 Score: 616
Period size: 233 Copynumber: 1.9 Consensus size: 244
21586975 TGAAAAGCAG
21586985 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
* * *
21587049 T-GA-TAAAAATAGAATTTG-A-AAA-T-AT-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 TAGATTAAAAATAGAAATTGAAGAAATTAATCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
* * *
21587107 CAATATGAGTTGA-TTTTGACAA-CAAAAATTGAAATTACCTCAGC-ATCTTGAGGCTCAACTCG
131 CAATATGAGTTGATTTTTGAAAAGCAAAAATTGAAATTACCTCAGCGATCCTGAGGCTCAACTCA
* *
21587169 CTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAATAA
196 CCTCTCACAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAATAA
*
21587218 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
* * *
21587283 AAAATAGATTAAAAGTAGAAATTGAAAACAGAAATTAAAATCCTCGGCGTGCCCCGAGGCTCAGC
65 ---ATAGATTAAAAATAGAAATTG---A-AGAAATT--AATCCTCAGCGTGCCCCGAGGCTCAAC
* *
21587348 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGA
121 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAAAAATTGAAATTACCTCAGCG-ATCCTGA
21587413 GGCTCAACTCACCTCTCACAATATGAGTTGA
185 GGCTCAACTCACCTCTCACAATATGAGTTGA
21587444 GGATTTTTCT
Statistics
Matches: 190, Mismatches: 14, Indels: 22
0.84 0.06 0.10
Matches are distributed among these distances:
233 63 0.33
238 1 0.01
239 2 0.01
240 13 0.07
245 1 0.01
246 3 0.02
247 1 0.01
250 2 0.01
251 42 0.22
252 8 0.04
253 21 0.11
255 33 0.17
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (244 bp):
AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
TAGATTAAAAATAGAAATTGAAGAAATTAATCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAGCAAAAATTGAAATTACCTCAGCGATCCTGAGGCTCAACTCA
CCTCTCACAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAATAA
Found at i:21587277 original size:88 final size:92
Alignment explanation
Indices: 21587130--21587375 Score: 262
Period size: 94 Copynumber: 2.7 Consensus size: 92
21587120 TTTTGACAAC
* * * * *
21587130 AAAAATTGAAATTACCTCAGC--ATCTTGAGGCTCAACTCGCTTCTCGCAATATGAGTTGATTTT
1 AAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
21587193 TTTGAAACATAAATT-AAA-A-AAA-T-
66 TTTGAAA-ATAAATTAAAAGAGAAATTA
21587216 AAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
1 AAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
21587279 TTTGAAAATAGATTAAAAGTAGAAATTGAAA
66 TTTGAAAATAAATTAAAAG-AGAAATT---A
* * * *
21587310 ACAGAAATT-AAAAT-CCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATT
1 A-A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
21587373 TTT
64 TTT
21587376 GAAAAGCATA
Statistics
Matches: 135, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
85 6 0.04
86 32 0.24
88 35 0.26
89 3 0.02
90 1 0.01
94 44 0.33
95 6 0.04
96 8 0.06
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (92 bp):
AAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAAATAAATTAAAAGAGAAATTA
Found at i:21587424 original size:73 final size:70
Alignment explanation
Indices: 21587304--21587443 Score: 190
Period size: 73 Copynumber: 2.0 Consensus size: 70
21587294 AAAGTAGAAA
* * *
21587304 TTGAAAACAGAAATTAAAATCCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 TTGAAAACAGAAATTAAAATCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
21587369 GATTT
66 GATTT
* * * *
21587374 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAA-CAGAAATT-AAAAT-CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
21587439 GTTGA
63 GTTGA
21587444 GGATTTTTCT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
70 7 0.12
71 7 0.12
72 4 0.07
73 42 0.70
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (70 bp):
TTGAAAACAGAAATTAAAATCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTT
Found at i:21595703 original size:12 final size:12
Alignment explanation
Indices: 21595681--21595716 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
21595671 TGGGATATGC
*
21595681 AATGAATGAATG
1 AATGCATGAATG
*
21595693 GATGCATGAATG
1 AATGCATGAATG
21595705 AATGCATGAATG
1 AATGCATGAATG
21595717 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:21595703 original size:16 final size:17
Alignment explanation
Indices: 21595677--21595708 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
21595667 AGTATGGGAT
21595677 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
21595694 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
21595709 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:21598081 original size:16 final size:18
Alignment explanation
Indices: 21598057--21598097 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
21598047 AAATCATTTT
*
21598057 GAAGAGAGAAA-AA-AAA
1 GAAGGGAGAAAGAAGAAA
*
21598073 GAAGGGAGAAAGAAGAGA
1 GAAGGGAGAAAGAAGAAA
21598091 GAAGGGA
1 GAAGGGA
21598098 TGGGGGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 10 0.48
17 2 0.10
18 9 0.43
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (18 bp):
GAAGGGAGAAAGAAGAAA
Found at i:21601452 original size:23 final size:23
Alignment explanation
Indices: 21601409--21601455 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
21601399 TAAACACATG
* *
21601409 ATTCTGTTTGGCCCTTTTGGCAT
1 ATTCTGTTTGGCCATTGTGGCAT
*
21601432 ATTCTGTTTGGCGATTGTGGCAT
1 ATTCTGTTTGGCCATTGTGGCAT
21601455 A
1 A
21601456 CTCTATTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.45
Consensus pattern (23 bp):
ATTCTGTTTGGCCATTGTGGCAT
Found at i:21603828 original size:454 final size:452
Alignment explanation
Indices: 21602979--21603887 Score: 1615
Period size: 454 Copynumber: 2.0 Consensus size: 452
21602969 TCCTTAGATG
21602979 GTAATTAGACCATTTTTTAAGCTAGTGGACAAAAATGGACATGAAGTAAGAGAAAATTTATGTTT
1 GTAATTAGACCATTTTTTAAGCTAGTGGACAAAAATGGACATGAAGTAAGAGAAAATTTATGTTT
*
21603044 TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAATCAAGTCAAAAAC
66 TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAATCAAGCCAAAAAC
* * *
21603109 CTTGTCCATCTTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGTCCAACT
131 CTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGGCCAACT
* *
21603174 TTCAAGCTCGATTGTAAGTCTATTCTTGTCCCGTTTTTAATGCTCTTTACATTTTTGAAGTCGTT
196 TTCAAGCTCGATTGTAAGTCTATTCTCGTCCCGTTTGTAATGCTCTTTACATTTTTGAAGTCGTT
* *
21603239 GACACTCGATCTATCTATTTCTACCACTATTTTGAGATATGATTAAGGTCTAAGGTTTGACCCAT
261 GACACTCGATCTATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAAGGTTTGACCCAT
21603304 GTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACAAG
326 GTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACAAG
21603369 TTTTGCTAAGTGATTTTTGATGAAACA-AAAAGGGACCTATTTGTAAAAAGTTATAAAATGA
391 TTTTGCTAAGTGATTTTTGATGAAACACAAAAGGGACCTATTTGTAAAAAGTTATAAAATGA
* * *
21603430 GTAATTAGACCATTTTTTAAGTTAGTGGACAAAAATGGACATGAGGT-AGTAGAAATTTTATGTT
1 GTAATTAGACCATTTTTTAAGCTAGTGGACAAAAATGGACATGAAGTAAG-AGAAAATTTATGTT
*
21603494 TTAAGTTAGGAGCATTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAAATCAAGCCAAAA
65 TTAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGC-AAAATCAAGCCAAAA
*
21603559 ACCTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGGCATAGCTAGGGTTTGGCCAA
129 ACCTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGGCCAA
*
21603624 CTTTCAAGCTCGATTGTAAGTCTGTTCTCGTCCCGTTTGTAATGCTCTTTACATTTTTTGAAGTC
194 CTTTCAAGCTCGATTGTAAGTCTATTCTCGTCCCGTTTGTAATGCTCTTTACA-TTTTTGAAGTC
*
21603689 GTTGACACTCGATCTAATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAGGGTTTGAC
258 GTTGACACTCGATCT-ATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAAGGTTTGAC
21603754 CCATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAA
322 CCATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAA
*
21603819 CAAGTTTTGCTAAGTGATTTTTGATGAAACACCTAAAGGGACCTATTTGTAAAAAGTTATAAAAT
387 CAAGTTTTGCTAAGTGATTTTTGATGAAACA-CAAAAGGGACCTATTTGTAAAAAGTTATAAAAT
21603884 GA
451 GA
21603886 GT
1 GT
21603888 GGTAAAAAAT
Statistics
Matches: 436, Mismatches: 16, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
450 2 0.00
451 106 0.24
452 125 0.29
453 26 0.06
454 142 0.33
456 35 0.08
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (452 bp):
GTAATTAGACCATTTTTTAAGCTAGTGGACAAAAATGGACATGAAGTAAGAGAAAATTTATGTTT
TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAATCAAGCCAAAAAC
CTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGGCCAACT
TTCAAGCTCGATTGTAAGTCTATTCTCGTCCCGTTTGTAATGCTCTTTACATTTTTGAAGTCGTT
GACACTCGATCTATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAAGGTTTGACCCAT
GTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACAAG
TTTTGCTAAGTGATTTTTGATGAAACACAAAAGGGACCTATTTGTAAAAAGTTATAAAATGA
Done.