Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 73 of 373
Found at i:22287411 original size:45 final size:46
Alignment explanation
Indices: 22287307--22287509 Score: 184
Period size: 46 Copynumber: 4.4 Consensus size: 46
22287297 GGGTCATTAT
*
22287307 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAG
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATGGAGAG
* * *
22287355 GAGGGCTAGTGTAAGACATGTCT-GGACATGCATCGGCCTGGAG-G
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATGGAGAG
* * *
22287399 CGTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCCGC-TACGAGAT
1 -G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-GGAGAG
* * * *
22287446 GATAGTCAGTGTAAGATCATGTCTGGGACATGGCATCGAC-TTGAGA-
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATGGAGAG
*
22287492 TATGAGCCAGTGTAAGAC
1 GA-GAGCCAGTGTAAGAC
22287510 CGTGTCTAGG
Statistics
Matches: 130, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
44 1 0.01
45 33 0.25
46 38 0.29
47 37 0.28
48 21 0.16
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.22
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATGGAGAG
Found at i:22287492 original size:47 final size:47
Alignment explanation
Indices: 22287310--22287532 Score: 201
Period size: 47 Copynumber: 4.8 Consensus size: 47
22287300 TCATTATGAG
*
22287310 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGGA-G
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TTGAGAGGATA
* * * *
22287358 GGCTAGTGTAAGACATGTCT-GGACAT-GCATCGGCCTG-GAGGCGTA
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTTGAGAGG-ATA
* * *
22287403 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCCGCTACGAGATGAT-
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCT-TGAGAGGATA
* * * *
22287449 AGTCAGTGTAAGATCATGTCTGGGACATGGCATCGACTTGAGA-TATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCTTGAGAGGATA
* *
22287496 AGCCAGTGTAAGACCGTGTCTAGG-CAATGGCATCGGC
1 AGCCAGTGTAAGA-CATGTCTGGGAC-ATGGCATCGGC
22287533 ACCTTACCCT
Statistics
Matches: 144, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.03
44 2 0.01
45 26 0.18
46 34 0.24
47 57 0.40
48 21 0.15
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTTGAGAGGATA
Found at i:22287500 original size:93 final size:92
Alignment explanation
Indices: 22287309--22287509 Score: 221
Period size: 93 Copynumber: 2.2 Consensus size: 92
22287299 GTCATTATGA
* * *
22287309 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGGAGGGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCCGCATCGAGAGGAAGGCTAGTGTAAGACAT
* * *
22287374 GTCTGGACATGCATCGGCCTGGAGGCGT
65 GTCTGGACATGCATCGGACTGGAGACAT
* * *
22287402 AAGCCAGTGTAAGACATGTCTGGGACAT-GCATCCGC-TACGAGATGATAGTC-AGTGTAAGATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCCGCAT-CGAGAGGA-AGGCTAGTGTAAGA-C
* *
22287464 ATGTCTGGGACATGGCATC-GACTTGAGATAT
63 ATGTCT-GGACAT-GCATCGGACTGGAGACAT
22287495 GAGCCAGTGTAAGAC
1 GAGCCAGTGTAAGAC
22287510 CGTGTCTAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
90 1 0.01
91 22 0.24
92 23 0.25
93 40 0.44
94 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (92 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCCGCATCGAGAGGAAGGCTAGTGTAAGACATG
TCTGGACATGCATCGGACTGGAGACAT
Found at i:22289363 original size:39 final size:39
Alignment explanation
Indices: 22289313--22289441 Score: 163
Period size: 39 Copynumber: 3.3 Consensus size: 39
22289303 AGCTACTCGT
* *
22289313 CAAATGCCTTCGGGACATAGCCCG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCA
* * *
22289352 CAAATACCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
* *
22289391 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCA
22289430 CAAATGCCTTCG
1 CAAATGCCTTCG
22289442 ATCTTAGTCT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
38 7 0.09
39 70 0.90
40 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
Found at i:22305012 original size:42 final size:42
Alignment explanation
Indices: 22304960--22305447 Score: 780
Period size: 42 Copynumber: 11.6 Consensus size: 42
22304950 TCAATACCTC
* *
22304960 TGTCCTAGACAGGGTCTTACACAG-AATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACAC-GTAATCAGATACGATGCCGA
* *
22305002 TGTCCCAGACATGGTCTTACACGAAATCAGATATGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
* * * **
22305044 TATCCTAAACATGGTCTTACACAAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
* *
22305086 TGTCCCAGACATGTTCTTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
* *
22305128 TGTCCTAGACATGGTCTTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
*
22305170 TGTCCTAGACATGGTCTTACACGTAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
*
22305212 TGTCCCAAACATGGTCTTACACGTAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
*
22305254 TGTCCTAGACATGGTCTTACACGTAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
22305296 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
* *
22305338 TGTCCCAAACATGGTCTTACACGTAATTAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
* *
22305380 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
22305422 TGTCCCAGACATGGTCTTACACGTAA
1 TGTCCCAGACATGGTCTTACACGTAA
22305448 ATCTCAAATC
Statistics
Matches: 417, Mismatches: 28, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
41 1 0.00
42 416 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
Found at i:22318073 original size:48 final size:48
Alignment explanation
Indices: 22318008--22318498 Score: 759
Period size: 48 Copynumber: 10.1 Consensus size: 48
22317998 GCTGAAATTG
* * *
22318008 ATGTATAAGATATGTATATGTGGTAAACCCGAATGGATAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
22318056 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
22318104 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
22318152 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
22318200 ATGTATGAGATACGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* ** *
22318250 ATATATGAGATATGTATATGTGGTAAAGCTAAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* *
22318300 ATATATGAGATATCTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
22318348 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
22318398 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
22318446 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
22318494 ATGTA
1 ATGTA
22318499 GGCGATGTGT
Statistics
Matches: 413, Mismatches: 24, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 1 0.00
48 276 0.67
49 8 0.02
50 127 0.31
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:22318124 original size:96 final size:96
Alignment explanation
Indices: 22318008--22318498 Score: 759
Period size: 98 Copynumber: 5.1 Consensus size: 96
22317998 GCTGAAATTG
* * *
22318008 ATGTATAAGATATGTATATGTGGTAAACCCGAATGGATAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
22318073 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
22318104 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
22318169 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
22318200 ATGTATGAGATACGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGT
** *
22318265 ATATGTGGTAAAGCTAAATGGTTAATGTGAAATAT
64 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
22318300 ATATATGAGATATCTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
22318365 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
66 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
22318398 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
22318463 ATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
22318494 ATGTA
1 ATGTA
22318499 GGCGATGTGT
Statistics
Matches: 363, Mismatches: 26, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
96 138 0.38
97 5 0.01
98 173 0.48
99 5 0.01
100 42 0.12
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:22318753 original size:37 final size:37
Alignment explanation
Indices: 22318645--22318753 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
22318635 GGAAATATAT
* *
22318645 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
22318682 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
22318719 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
22318754 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:22326719 original size:21 final size:21
Alignment explanation
Indices: 22326681--22326720 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22326671 ATTACTCCAA
*
22326681 AGAAGCCGATTGATCCATCTC
1 AGAAGCCGATTCATCCATCTC
22326702 AGAAGCCGGATTCA-CCATC
1 AGAAGCC-GATTCATCCATC
22326721 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAAGCCGATTCATCCATCTC
Found at i:22329030 original size:19 final size:19
Alignment explanation
Indices: 22329006--22329043 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22328996 TGGACCACGT
22329006 TGGGCCTAGATGGGC-CGTG
1 TGGGCC-AGATGGGCTCGTG
*
22329025 TGGGCCCGATGGGCTCGTG
1 TGGGCCAGATGGGCTCGTG
22329044 GGCCCCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.08, C:0.24, G:0.47, T:0.21
Consensus pattern (19 bp):
TGGGCCAGATGGGCTCGTG
Found at i:22329302 original size:27 final size:27
Alignment explanation
Indices: 22329272--22329324 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
22329262 CAGTTTGTAA
22329272 AATTATCGTAATACCCCTATAGGGTAT
1 AATTATCGTAATACCCCTATAGGGTAT
*
22329299 AATTATCGTAATACCCCTATATGGTA
1 AATTATCGTAATACCCCTATAGGGTA
22329325 GAATGACGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (27 bp):
AATTATCGTAATACCCCTATAGGGTAT
Found at i:22329777 original size:27 final size:27
Alignment explanation
Indices: 22329747--22329811 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
22329737 ACATCTGATA
*
22329747 CTGATTCTATATTGGGCTTAA-GCCCAC
1 CTGATTCTATAATGGGC-TAAGGCCCAC
*
22329774 CTGATTCTGTTAATGGGCTAAGGCCCAC
1 CTGATTCT-ATAATGGGCTAAGGCCCAC
*
22329802 CTGATACTAT
1 CTGATTCTAT
22329812 TTCTGTGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (27 bp):
CTGATTCTATAATGGGCTAAGGCCCAC
Found at i:22331420 original size:27 final size:27
Alignment explanation
Indices: 22331390--22331442 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
22331380 CAGTTTGTAA
22331390 AATTATCGTAATACCCCTATAGGGTAT
1 AATTATCGTAATACCCCTATAGGGTAT
*
22331417 AATTATCGTAATACCCCTATATGGTA
1 AATTATCGTAATACCCCTATAGGGTA
22331443 GAATGACGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (27 bp):
AATTATCGTAATACCCCTATAGGGTAT
Found at i:22331895 original size:27 final size:27
Alignment explanation
Indices: 22331865--22331929 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
22331855 ACATCTGATA
*
22331865 CTGATTCTATATTGGGCTTAA-GCCCAC
1 CTGATTCTATAATGGGC-TAAGGCCCAC
*
22331892 CTGATTCTGTTAATGGGCTAAGGCCCAC
1 CTGATTCT-ATAATGGGCTAAGGCCCAC
*
22331920 CTGATACTAT
1 CTGATTCTAT
22331930 TTCTGTGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (27 bp):
CTGATTCTATAATGGGCTAAGGCCCAC
Found at i:22345004 original size:37 final size:37
Alignment explanation
Indices: 22344945--22345090 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
22344935 AGCTCAGACG
* *
22344945 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
22344982 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
22345019 TACTCTCCGCACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
22345056 TAATCTCCACAAGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
22345091 ATATATTCCA
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:22345433 original size:47 final size:47
Alignment explanation
Indices: 22345292--22345580 Score: 402
Period size: 47 Copynumber: 6.1 Consensus size: 47
22345282 ATATATATAT
* * * *
22345292 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
22345339 CCACATTGGCCATTTTCGGCCTTATCA-ACATATGCATGCTCACATTCA
1 TCACATTGGCCA--TTCGGCCTTATCACATATATGCATGTTCACATTCA
22345387 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
22345434 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
22345481 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
22345528 ACACATTGGCCATTCGGCCTTATCACATATATACACAG-TCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCA
22345575 TCACAT
1 TCACAT
22345581 AAAATCCTAA
Statistics
Matches: 216, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
46 13 0.06
47 162 0.75
48 30 0.14
49 11 0.05
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:22345570 original size:141 final size:141
Alignment explanation
Indices: 22345292--22345581 Score: 476
Period size: 141 Copynumber: 2.0 Consensus size: 141
22345282 ATATATATAT
* *
22345292 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTTCG
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCA-TTTCG
* *
22345357 GCCTTATCAACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCA
65 GCCTTATCAACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACA
*
22345422 TGTTCACATTCA
130 AGTTCACATTCA
* *
22345434 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCA-TTCGG
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTCGG
22345498 CCTTATCACACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACA
66 CCTTATCA-ACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACA
22345563 CAG-TCACATTCA
130 -AGTTCACATTCA
22345575 TCACATA
1 TCACATA
22345582 AAATCCTAAA
Statistics
Matches: 139, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
140 13 0.09
141 70 0.50
142 56 0.40
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTCGG
CCTTATCAACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACAA
GTTCACATTCA
Found at i:22362061 original size:27 final size:27
Alignment explanation
Indices: 22362031--22362127 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
22362021 ATATTGAGTC
* *
22362031 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22362058 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
22362085 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
22362113 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22362128 GTACAATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 44 0.71
28 18 0.29
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22370004 original size:27 final size:27
Alignment explanation
Indices: 22369787--22369991 Score: 211
Period size: 27 Copynumber: 7.6 Consensus size: 27
22369777 ATATTGAGCC
* * *
22369787 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCGAA-T
* * *
22369814 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCGAAT
*
22369841 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCGAA-T
** *
22369869 CGCACACTTAGTGCCGCATGGTC-AATT
1 CGCACACTTAGTGCTACATAGTCGAA-T
* *
22369896 CGCACACTTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTA-CATAGTCGA-AT
* *
22369923 CGCACACTTAGTACAACATAGTCGAAT
1 CGCACACTTAGTGCTACATAGTCGAAT
22369950 CGCACACTTAGTGCTACATAGTCGAAT
1 CGCACACTTAGTGCTACATAGTCGAAT
22369977 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22369992 GTACAATTTA
Statistics
Matches: 154, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
27 129 0.84
28 25 0.16
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCGAAT
Found at i:22373301 original size:27 final size:27
Alignment explanation
Indices: 22373271--22373448 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22373261 ATATTGAGTC
* * * *
22373271 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22373298 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22373325 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22373353 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22373380 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22373407 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22373434 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22373449 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22373410 original size:82 final size:81
Alignment explanation
Indices: 22373292--22373447 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22373282 TGCTATATAA
* *
22373292 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22373357 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22373374 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22373438 CACTTAGTGC
65 CACTTAGTGC
22373448 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22385876 original size:43 final size:43
Alignment explanation
Indices: 22385813--22385930 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 43
22385803 TTCAACGAAC
*
22385813 TCGCACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
* * *
22385856 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAGTTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
22385899 TCGCACACTTAGTGCC-ATTATATTAAACCGAA
1 TCGCACACTTAGTGCCAATTA-ATT-AACCGAA
22385931 CTTATATCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 4 0.06
43 58 0.87
44 5 0.07
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
Found at i:22394826 original size:40 final size:40
Alignment explanation
Indices: 22394771--22394961 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
22394761 GGATATAACT
* *
22394771 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-GAGTA
* *
22394811 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGAGTA
* * *
22394851 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGAGTA
* *
22394891 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGATT-AGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGAGTA
* ** *
22394930 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
22394962 TTTTCATCCA
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 32 0.24
40 102 0.75
41 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGAGTA
Found at i:22397628 original size:27 final size:27
Alignment explanation
Indices: 22397598--22397753 Score: 213
Period size: 27 Copynumber: 5.8 Consensus size: 27
22397588 TACTGAAATG
* *
22397598 CCCTCGATTTGTAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACTGTTTTA
*
22397625 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACTGTTTTA
* *
22397652 CCCTCGAATTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACTGTTTTA
*
22397679 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACTGTTTTA
* * * *
22397706 CCCTTGATTTACAGAATTATTATTTTA
1 CCCTCGATTTATAGAATTACTGTTTTA
*
22397733 CCCTCGATTTATAAAATTACT
1 CCCTCGATTTATAGAATTACT
22397754 AAAATACCCT
Statistics
Matches: 115, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACTGTTTTA
Found at i:22397753 original size:54 final size:54
Alignment explanation
Indices: 22397610--22397779 Score: 214
Period size: 54 Copynumber: 3.1 Consensus size: 54
22397600 CTCGATTTGT
** ** * *
22397610 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAATTAC
1 AGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
*
22397664 AGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
1 AGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
* * *** *
22397718 AGAATTATTATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTAC
1 AGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
*
22397772 AAAATTAC
1 AGAATTAC
22397780 CAAAATACCC
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (54 bp):
AGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
Found at i:22397761 original size:27 final size:27
Alignment explanation
Indices: 22397731--22398000 Score: 183
Period size: 27 Copynumber: 10.0 Consensus size: 27
22397721 ATTATTATTT
* *
22397731 TACCCTCGATTTATAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
22397758 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
22397785 TACCCTAG-TTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
22397811 TACCAC-TGGTTTGTAAAATTACCAAAA
1 TACC-CTTGATTTATAAAATTACCAAAA
* * * *
22397838 TACCATTGGTTTGA-GAAATTACCGAAA
1 TACCCTTGATTT-ATAAAATTACCAAAA
* ** *
22397865 TATCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
22397892 TACCAC-TGATTTACAAAATTA-CATAAA
1 TACC-CTTGATTTATAAAATTACCA-AAA
* *
22397919 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAT-AAAATTACCA-AAA
* * * **
22397948 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * * *
22397975 TACCCTTGGTTTGTAGATTTACCAAA
1 TACCCTTGATTTATAAAATTACCAAA
22398001 GCGCCCTTGT
Statistics
Matches: 191, Mismatches: 41, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
26 24 0.13
27 141 0.74
28 8 0.04
29 18 0.09
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:22397762 original size:81 final size:81
Alignment explanation
Indices: 22397579--22397781 Score: 217
Period size: 81 Copynumber: 2.5 Consensus size: 81
22397569 ATACTTTAGT
* * * * *
22397579 TTACCAAATTACTGAAATGCCCTCGATTTGTAGAATTACCGTTTTACCCTCGATTTATAGAATTA
1 TTACAAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTA
*
22397644 CCGTTTTACCCTCGAA
66 CCATTTTACCCTCGAA
* *** * *
22397660 TTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTA
1 TTACAAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTA
** *
22397725 TTATTTTACCCTCGAT
66 CCATTTTACCCTCGAA
* * * * * *
22397741 TTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TTACAAAATTACTGAAATACCCTCGATTTATAGAATTACCA
22397782 AAATACCCTA
Statistics
Matches: 96, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (81 bp):
TTACAAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTA
CCATTTTACCCTCGAA
Found at i:22397789 original size:54 final size:54
Alignment explanation
Indices: 22397677--22397986 Score: 175
Period size: 54 Copynumber: 5.7 Consensus size: 54
22397667 ATTACTGTTT
* *** * * ** ***
22397677 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
22397731 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * **
22397785 TACCCTAG-TTTGTAAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAA
* * * * ** * *** **
22397838 TACCATTGGTTTGA-GAAATTACCGAAATATCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTT-ATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *
22397892 TACCACT-GATTTACAAAATTAC-ATAAATACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACC-CTCGATTTATAAAATTACTA-AAATACCCTTG-GTTTAC--AAAATTACCA-AAA
* * * * *
22397948 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTT
22397987 GTAGATTTAC
Statistics
Matches: 204, Mismatches: 39, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
53 47 0.23
54 109 0.53
55 9 0.04
56 39 0.19
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:22397912 original size:81 final size:80
Alignment explanation
Indices: 22397738--22397922 Score: 248
Period size: 80 Copynumber: 2.3 Consensus size: 80
22397728 TTTTACCCTC
* * *
22397738 GATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAGTTTGTAAAAT
1 GATTTATAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAAT
22397803 TACCAAAATACCACT
66 TACCAAAATACCACT
* * * * *
22397818 GGTTTGTAAAATTACCAAAATACCATTGGTTTGA-GAAATTACCGAAATATCCTCAATTTGTAAA
1 GATTTATAAAATTACCAAAATACCATTGGTTT-ACAAAATTACCAAAATACCCT-AATTTGTAAA
22397882 ATTACCAAAATACCACT
64 ATTACCAAAATACCACT
*
22397899 GATTTACAAAATTA-CATAAATACC
1 GATTTATAAAATTACCA-AAATACC
22397923 CTTGACTTTC
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 46 0.51
81 45 0.49
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (80 bp):
GATTTATAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAAT
TACCAAAATACCACT
Found at i:22398104 original size:27 final size:27
Alignment explanation
Indices: 22398027--22398104 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
22398017 AAATGACAAA
* *
22398027 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
22398054 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
22398081 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
22398105 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:22399297 original size:25 final size:25
Alignment explanation
Indices: 22399265--22399312 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
22399255 TTATAATATG
* *
22399265 AAAATGACCGTTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
22399290 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
22399313 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:22399363 original size:9 final size:9
Alignment explanation
Indices: 22399351--22399407 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
22399341 TTTGATAAAC
22399351 ATGATATGT
1 ATGATATGT
*
22399360 ATGATATGCAC
1 ATGATATG--T
*
22399371 ATGACATGT
1 ATGATATGT
*
22399380 ATGATATGCAC
1 ATGATATG--T
22399391 ATGATATGT
1 ATGATATGT
22399400 ATGATATG
1 ATGATATG
22399408 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:22399374 original size:20 final size:20
Alignment explanation
Indices: 22399349--22399419 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
22399339 ATTTTGATAA
22399349 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22399369 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
22399389 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22399409 ACATGAGATGT
1 ACATGATATGT
22399420 TCGTAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22399396 original size:11 final size:11
Alignment explanation
Indices: 22399360--22399414 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
22399350 CATGATATGT
22399360 ATGATATGCAC
1 ATGATATGCAC
* *
22399371 ATGACATG--T
1 ATGATATGCAC
22399380 ATGATATGCAC
1 ATGATATGCAC
*
22399391 ATGATATG--T
1 ATGATATGCAC
22399400 ATGATATGCAC
1 ATGATATGCAC
22399411 ATGA
1 ATGA
22399415 GATGTTCGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22399496 original size:23 final size:24
Alignment explanation
Indices: 22399466--22399684 Score: 284
Period size: 25 Copynumber: 9.0 Consensus size: 24
22399456 AGGAAGTGCA
22399466 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
22399489 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
22399512 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
22399537 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
22399562 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
22399587 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
22399612 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
* *
22399636 AAAGGGCTTTTGCCCTAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
22399660 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
22399685 GATAAAGCAG
Statistics
Matches: 182, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
23 45 0.25
24 30 0.16
25 107 0.59
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:22399547 original size:25 final size:25
Alignment explanation
Indices: 22399466--22399656 Score: 293
Period size: 25 Copynumber: 7.8 Consensus size: 25
22399456 AGGAAGTGCA
22399466 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
22399489 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
22399512 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
22399537 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
22399562 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
22399587 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
22399612 AAAGGGCTTATGCCCCAGTTAT-AA
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
22399636 AAAGGGCTTTTGCCCTAGTTA
1 AAAGGGCTTATGCCCCAGTTA
22399657 CTAAAAGAGG
Statistics
Matches: 161, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
23 45 0.28
24 20 0.12
25 96 0.60
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:22403516 original size:6 final size:6
Alignment explanation
Indices: 22403495--22403566 Score: 83
Period size: 6 Copynumber: 11.8 Consensus size: 6
22403485 TCCCAGAACT
* * * *
22403495 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
22403544 AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT
22403567 TAGGTGACAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
5 1 0.02
6 50 0.91
7 3 0.05
8 1 0.02
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:22403588 original size:43 final size:43
Alignment explanation
Indices: 22403494--22403600 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
22403484 TTCCCAGAAC
* * * *
22403494 TAGAATCAAAATGAGAATCAGAATCAGAATCAGGTGACAGAAT
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAA
*
22403537 TAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAAAAA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAA
* *
22403580 TAGAATCAGAATTAGTATCAG
1 TAGAATCAGAATCAGAATCAG
22403601 GTAACAGAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.21
Consensus pattern (43 bp):
TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAA
Found at i:22403618 original size:31 final size:31
Alignment explanation
Indices: 22403543--22403618 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
22403533 GAATTAGAAT
* *
22403543 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* * *
22403574 CAAAAAT-AGAATCAGAATTAGTATCAGGTAA
1 C-AGAATCAGAATCAGAATCAGAATCAGGTAA
*
22403605 CAGAATCAAAATCA
1 CAGAATCAGAATCA
22403619 AAATGTGAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
30 4 0.11
31 28 0.78
32 4 0.11
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:22403842 original size:69 final size:67
Alignment explanation
Indices: 22403767--22403906 Score: 190
Period size: 67 Copynumber: 2.1 Consensus size: 67
22403757 TCACCAGATA
* * * * *
22403767 CAGATATTGTGGCTAGGCCACCAGAACATATATATATGTGGCGAAGCCACCAAATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAAC--AGATATATGTGGCGAAGCCACCAAATTGCAACGAGG
22403832 CTGC
64 CTGC
* * *
22403836 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAACGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAAATTGCAACGAGGCT
22403901 GC
66 GC
22403903 CAGA
1 CAGA
22403907 ACGATTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 40 0.63
69 23 0.37
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAAATTGCAACGAGGCT
GC
Found at i:22403884 original size:27 final size:26
Alignment explanation
Indices: 22403836--22403887 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
22403826 GCGAGGCTGC
*
22403836 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
22403862 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
22403888 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:22404191 original size:54 final size:54
Alignment explanation
Indices: 22404123--22404505 Score: 516
Period size: 54 Copynumber: 7.1 Consensus size: 54
22404113 AACACCATAG
* * * *
22404123 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
22404177 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * * *
22404231 GGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * **
22404285 GGGTAAAA-CGATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAG-TAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
22404339 GGGTAAAACAATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
22404393 GGGTAAAACAGTAATTCTATAAATCGAGGTTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
22404447 GGGTAAAATAGTGATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
22404501 GGGTA
1 GGGTA
22404506 CTTTGGTAAT
Statistics
Matches: 297, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.00
54 296 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:22404516 original size:27 final size:27
Alignment explanation
Indices: 22404123--22404505 Score: 469
Period size: 27 Copynumber: 14.2 Consensus size: 27
22404113 AACACCATAG
* *
22404123 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
22404150 GGGTAAAACGATAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
22404177 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
22404204 GGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
22404231 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
22404258 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
22404285 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
22404312 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*** *
22404339 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
22404366 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
** *
22404393 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
22404420 GGTTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
22404447 GGGTAAAATAGTGATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
22404474 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
22404501 GGGTA
1 GGGTA
22404506 CTTTGGTAAT
Statistics
Matches: 309, Mismatches: 47, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 309 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTGTAAATCGA
Found at i:22404516 original size:81 final size:81
Alignment explanation
Indices: 22404123--22404505 Score: 516
Period size: 81 Copynumber: 4.7 Consensus size: 81
22404113 AACACCATAG
* * *
22404123 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAAGGGTAAAATA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAATG
22404187 GTAATTCTATAAATCGA
65 GTAATTCTATAAATCGA
* * * * * * *
22404204 GGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAACGA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGG
* *
22404269 TAATTTTGTAAATCGA
66 TAATTCTATAAATCGA
* * * ***
22404285 GGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGG
22404350 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * *
22404366 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGTTAAAATGG
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGG
22404431 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * * *
22404447 GGGTAAAATAGTGATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
22404506 CTTTGGTAAT
Statistics
Matches: 269, Mismatches: 32, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
81 268 1.00
82 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGG
TAATTCTATAAATCGA
Found at i:22411810 original size:47 final size:47
Alignment explanation
Indices: 22411753--22412116 Score: 311
Period size: 47 Copynumber: 7.3 Consensus size: 47
22411743 TGATGAATGA
22411753 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTT
22411800 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-T-T
* ** * ** *
22411849 GTGATGAATGTGA-AAGTGTATATATGATAGGCCTAATG-GCCGATGTGATGAATGTGAAGTGTA
1 AT-AT--ATGTGATAAG-G--CCTA--AT-GGCC-GATGTGATGA-ATG-TG-A----AAGT-T-
22411912 T
47 T
*
22411913 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTT
* * *
22411960 ATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAACTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTT
*
22412007 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-T-T
* * * * * * *
22412056 ATATATGTGACAGGGCCGAGTGGCCAACGTGATTG-ATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGA-TGAATGTGAAAGTTT
*
22412103 ATAAATGTGATAAG
1 ATATATGTGATAAG
22412117 TCCCGAAGGG
Statistics
Matches: 261, Mismatches: 32, Indels: 48
0.77 0.09 0.14
Matches are distributed among these distances:
47 145 0.56
48 1 0.00
49 42 0.16
50 4 0.02
51 3 0.01
52 7 0.03
53 1 0.00
54 4 0.02
55 5 0.02
56 9 0.03
57 9 0.03
58 5 0.02
59 4 0.02
60 1 0.00
61 7 0.03
62 3 0.01
63 2 0.01
64 9 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTT
Found at i:22411852 original size:21 final size:21
Alignment explanation
Indices: 22411826--22411869 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22411816 CTAATGGCCG
22411826 ATGTGATGAATGTGAAAGTGT
1 ATGTGATGAATGTGAAAGTGT
22411847 ATGTGATGAATGTGAAAGTGT
1 ATGTGATGAATGTGAAAGTGT
22411868 AT
1 AT
22411870 ATATGATAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (21 bp):
ATGTGATGAATGTGAAAGTGT
Found at i:22411903 original size:65 final size:66
Alignment explanation
Indices: 22411779--22411912 Score: 227
Period size: 65 Copynumber: 2.0 Consensus size: 66
22411769 CTAATGGCCG
*
22411779 ATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG
22411844 TGT
64 TGT
22411847 ATGTGATGAATGTGAAAGTGTATATA-TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAGTG
1 ATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTG
22411910 T
66 T
22411911 AT
1 AT
22411913 ATATATGTGA
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
64 8 0.12
65 28 0.43
66 4 0.06
68 25 0.38
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (66 bp):
ATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTG
T
Found at i:22411932 original size:113 final size:113
Alignment explanation
Indices: 22411754--22411961 Score: 375
Period size: 113 Copynumber: 1.8 Consensus size: 113
22411744 GATGAATGAA
*
22411754 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTA
1 TATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTA
22411819 ATGGCCGATGTGATGAATGTGAAAGTGTATGTGATGAATGTGAAAGTG
66 ATGGCCGATGTGATGAATGTGAAAGTGTATGTGATGAATGTGAAAGTG
22411867 TATATATGAT-AGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGATAAGGCC
1 TATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-T-TATATATGTGATAAGGCC
22411930 TAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 TAATGGCCGATGTGATGAATGTGAAAGTGTAT
22411962 ATATGTGATA
Statistics
Matches: 92, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
111 4 0.04
112 29 0.32
113 59 0.64
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (113 bp):
TATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATGTGATGAATGTGAAAGTG
Found at i:22411959 original size:92 final size:92
Alignment explanation
Indices: 22411847--22412059 Score: 358
Period size: 94 Copynumber: 2.3 Consensus size: 92
22411837 GTGAAAGTGT
*
22411847 ATGTGATGAATGTGAAAGTGTATATATGATA-GGCCTAATGGCCGATGTGATGAATGTG-AAGTG
1 ATGTGATGAATGTGAAAGTGTATATATGATAGGGCCTAATGGCCGATGTGATGAATGTGAAACTG
22411910 TATATATATGTGATAAGGCCTAATGGCCG
66 --TATATATGTGATAAGGCCTAATGGCCG
22411939 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAC
1 ATGTGATGAATGTGAAAGTGTATATA--TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAC
22412004 TGTATATATGTGATAAGGCCTAATGGCCG
64 TGTATATATGTGATAAGGCCTAATGGCCG
*
22412033 ATGTGATGAATGTGGAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
22412060 ATGTGACAGG
Statistics
Matches: 115, Mismatches: 2, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
92 27 0.23
94 57 0.50
95 27 0.23
96 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (92 bp):
ATGTGATGAATGTGAAAGTGTATATATGATAGGGCCTAATGGCCGATGTGATGAATGTGAAACTG
TATATATGTGATAAGGCCTAATGGCCG
Found at i:22412026 original size:94 final size:94
Alignment explanation
Indices: 22411847--22412116 Score: 388
Period size: 96 Copynumber: 2.9 Consensus size: 94
22411837 GTGAAAGTGT
22411847 ATGTGATGAATGTGAAAGTGTATATA--TGATA-GGCCTAATGGCCGATGTGATGAATGTG-AAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
22411908 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
*
22411939 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAC
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
22412004 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
22412033 ATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATTG-ATGTGA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGA-TGAATGTGA
*
22412097 AAGTGTATAAATGTGATAAG
63 AAGTGTATATATGTGATAAG
22412117 TCCCGAAGGG
Statistics
Matches: 162, Mismatches: 9, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
92 26 0.16
94 51 0.31
95 27 0.17
96 56 0.35
97 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:22412291 original size:37 final size:37
Alignment explanation
Indices: 22412235--22412313 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
22412225 CCGAGCTCTA
* * * *
22412235 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22412272 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22412309 AAGAC
1 AAGAC
22412314 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22414379 original size:29 final size:29
Alignment explanation
Indices: 22414337--22414408 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
22414327 TTCGAGATTG
* *
22414337 GCACTAAGTGTGCGGGCTTGAAA-TGCATA
1 GCACTAAGTGTGCGAG-TTGAAAGTACATA
* *
22414366 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTGAAAGTACATA
22414395 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22414409 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAGTACATA
Found at i:22414801 original size:40 final size:40
Alignment explanation
Indices: 22414757--22414860 Score: 131
Period size: 39 Copynumber: 2.6 Consensus size: 40
22414747 AGTGACCATA
* *
22414757 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT-AAT
1 TCCGGGCTAAG-TCCGAAGGCATTGGTGCGAGATACTAAAT
* *
22414797 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAAAT
22414837 T-CGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGT-CCGAAG-GCATT
22414861 CATGCTAGTG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
39 31 0.55
40 20 0.36
41 5 0.09
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAAAT
Found at i:22414818 original size:39 final size:40
Alignment explanation
Indices: 22414770--22414860 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 40
22414760 GGACTAAGAT
*
22414770 CCGAAGGCATTTGTGCGAGATACT-AATTCCGGGCTAAG-C
1 CCGAAGGCATTGGTGCGAGATACTAAATT-CGGGCTAAGTC
*
22414809 CCGAAGGCATTGGTGCGAGTTACTAAATTCGGGCTAAGTC
1 CCGAAGGCATTGGTGCGAGATACTAAATTCGGGCTAAGTC
22414849 CCGAAGAGCATT
1 CCGAAG-GCATT
22414861 CATGCTAGTG
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
39 31 0.66
40 11 0.23
41 5 0.11
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGAAGGCATTGGTGCGAGATACTAAATTCGGGCTAAGTC
Found at i:22414882 original size:40 final size:40
Alignment explanation
Indices: 22414797--22415031 Score: 258
Period size: 40 Copynumber: 5.9 Consensus size: 40
22414787 AGATACTAAT
** * * *
22414797 TCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
22414836 TTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
22414876 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
22414916 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
22414956 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
22414996 TCCGGGCTAGGTCCCAAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
22415032 CGTGTATTCG
Statistics
Matches: 169, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
39 10 0.06
40 147 0.87
41 12 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:22418620 original size:49 final size:49
Alignment explanation
Indices: 22418506--22418850 Score: 535
Period size: 47 Copynumber: 7.2 Consensus size: 49
22418496 CGAATATGAA
22418506 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22418553 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22418602 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22418651 ATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
22418698 ATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAATG--TATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22418745 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
22418794 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22418841 ATGTGATAAG
1 ATGTGATAAG
22418851 TCCCGAAGGG
Statistics
Matches: 279, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 140 0.50
48 1 0.00
49 138 0.49
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
Found at i:22418697 original size:96 final size:95
Alignment explanation
Indices: 22418506--22418850 Score: 539
Period size: 96 Copynumber: 3.6 Consensus size: 95
22418496 CGAATATGAA
22418506 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
22418571 GCCGATGTGATGAATGTGAAAGTGTATATAT
66 GCCGATGTGATGAATGTGAAAGTG-ATATAT
*
22418602 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
22418667 TGGCCGATGTGATGAATGTGAAAGTG-TATAT
64 TGGCCGATGTGATGAATGTGAAAGTGATATAT
* *
22418698 ATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
22418763 GCCGATGTGATGAATGTGGAAGTGTATATAT
66 GCCGATGTGATGAATGTGAAAGTG-ATATAT
* * * * * * * *
22418794 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
22418851 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 45 0.19
96 141 0.61
98 46 0.20
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (95 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGATATAT
Found at i:22419025 original size:37 final size:37
Alignment explanation
Indices: 22418969--22419044 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 37
22418959 CCGAGCTCTA
* * ** *
22418969 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
22419006 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
22419043 AA
1 AA
22419045 AACTTCGTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:22421860 original size:14 final size:14
Alignment explanation
Indices: 22421828--22421866 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
22421818 TTTTTTTTCA
22421828 TTTTCTCTTCTTCT
1 TTTTCTCTTCTTCT
* *
22421842 ATTTCTCTTCTTGT
1 TTTTCTCTTCTTCT
*
22421856 TTTTCTTTTCT
1 TTTTCTCTTCT
22421867 CCCCTATAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.03, T:0.72
Consensus pattern (14 bp):
TTTTCTCTTCTTCT
Found at i:22423400 original size:60 final size:60
Alignment explanation
Indices: 22423300--22423436 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 60
22423290 AACTATGTTA
* * *
22423300 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTGCGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
* * * *
22423360 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCTAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGGCCCAGATTAATACTG
*
22423420 ATACGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
22423437 GTTAACACTG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.06
60 49 0.75
61 12 0.18
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:22424567 original size:42 final size:42
Alignment explanation
Indices: 22424467--22424572 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 42
22424457 CTGAGATATC
* *
22424467 GTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGATATTTAT
1 GTGTAAGACCATGTCTGGGACACAGGCATCGATTGA-ATTTAT
*
22424510 GTATAAGACCATGTCTGGGACATCA-GCATCGTATCTG-ATTT-T
1 GTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAATTTAT
*
22424552 GTGTAAGACCCTGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
22424573 TAAAACATCG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
42 20 0.36
43 29 0.53
44 4 0.07
45 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGATTGAATTTAT
Found at i:22432941 original size:44 final size:42
Alignment explanation
Indices: 22432879--22433035 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 42
22432869 TGTGTTTTTG
* *
22432879 TGTAAGACCATGTTTGGGACGTTGGCATCGACTTGTGATTTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGA-TT-TGATTTACA
* *
22432923 TGTAAGACCATGTCTGGGACATTGACATCGTATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACGTTGGCATCG-ATTTGATTTACA
* *
22432965 TGTAAGACCCTGTCTGGGACAG-TGGCGTCGATATTCGA-TTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGAT-TT-GATTTACA
*
22433008 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
22433036 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 2 0.02
42 31 0.32
43 33 0.34
44 29 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATTTGATTTACA
Found at i:22433016 original size:43 final size:42
Alignment explanation
Indices: 22432918--22433027 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
22432908 GACTTGTGAT
* * * *
22432918 TTACGTGTAAGACCATGTCTGGGACATTGACATCGTATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGACATCGTATTCGA
* * *
22432960 TTTCATGTAAGACCCTGTCTGGGACAGTGGCGTCGATATTCGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGACATCG-TATTCGA
22433003 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
22433028 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 29 0.50
43 28 0.48
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCCTGTCTGGGACAGTGACATCGTATTCGA
Found at i:22433408 original size:64 final size:64
Alignment explanation
Indices: 22433329--22433458 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
22433319 CTTATATGTG
22433329 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
22433393 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
22433457 TT
1 TT
22433459 CAACTGTTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (64 bp):
TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
Found at i:22447472 original size:127 final size:125
Alignment explanation
Indices: 22447246--22447473 Score: 302
Period size: 127 Copynumber: 1.8 Consensus size: 125
22447236 AAAAAACAAA
*
22447246 AAGATGATAATTATGAATATATAATTATATCCATTATAATATATATTAATTATTATCAACTTTAT
1 AAGATGATAATTATGAATATATAATTATATCCATTATAATATATATTAATTATTATCAACTTTAC
* *
22447311 ATAGAGTTAGGATTAGTGTTAATTTCATCACATTTTATTTTATAAGTTTTTAATAATAAT
66 ATAGAATTAGGATTAGTGTTAATATCATCACATTTTATTTTATAAGTTTTTAATAATAAT
* * *
22447371 AAGATGATAATCT-TTAATATATAATTATATCTATTATAAATTATATATTAATTTTTATCAA-TT
1 AAGATGATAAT-TATGAATATATAATTATATCCATTAT-AA-TATATATTAATTATTATCAACTT
* *
22447434 TAGCATAGAATT-GCGATTAGTTTTAATCAT-ATCTCATTTT
63 TA-CATAGAATTAG-GATTAGTGTTAAT-ATCATCACATTTT
22447474 TGTTGAAATA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
125 33 0.37
126 8 0.09
127 47 0.53
128 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (125 bp):
AAGATGATAATTATGAATATATAATTATATCCATTATAATATATATTAATTATTATCAACTTTAC
ATAGAATTAGGATTAGTGTTAATATCATCACATTTTATTTTATAAGTTTTTAATAATAAT
Found at i:22473548 original size:20 final size:20
Alignment explanation
Indices: 22473500--22473551 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
22473490 AAATAGGGTC
22473500 ACACGCCCATGTGGCTCGGG
1 ACACGCCCATGTGGCTCGGG
*
22473520 ACATGCCCATGTGGCTCGGG
1 ACACGCCCATGTGGCTCGGG
*
22473540 ACACACCCATGT
1 ACACGCCCATGT
22473552 CCTCAGCTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.17
Consensus pattern (20 bp):
ACACGCCCATGTGGCTCGGG
Found at i:22483387 original size:37 final size:37
Alignment explanation
Indices: 22483328--22483473 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
22483318 AGCTCAGACG
* *
22483328 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
22483365 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
22483402 TACTCTCCGCACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
22483439 TAATCTCCACAAGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
22483474 ATATATTTCC
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:22483808 original size:47 final size:47
Alignment explanation
Indices: 22483678--22483967 Score: 411
Period size: 47 Copynumber: 6.1 Consensus size: 47
22483668 TATATATATT
* * * *
22483678 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
22483725 CCACATTGGCCATTTTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCA--TTCGGCCTTATCACATATATGCATGTTCACATTCA
22483774 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
22483821 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
22483868 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
22483915 ACACATTGGCCATTCGGCCTTATCACATATATACACAG-TCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCA
22483962 TCACAT
1 TCACAT
22483968 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
47 176 0.81
48 1 0.00
49 41 0.19
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:22483933 original size:141 final size:142
Alignment explanation
Indices: 22483678--22483968 Score: 487
Period size: 141 Copynumber: 2.0 Consensus size: 142
22483668 TATATATATT
* *
22483678 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTTCG
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCA-TTTCG
* *
22483743 GCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGC
65 GCCTTATCACACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATAC
*
22483808 A-TGTTCACATTCA
130 ACAG-TCACATTCA
* *
22483821 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCA-TTCGG
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTCGG
22483885 CCTTATCACACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACA
66 CCTTATCACACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACA
22483950 CAGTCACATTCA
131 CAGTCACATTCA
22483962 TCACATA
1 TCACATA
22483969 AAATCCTAAA
Statistics
Matches: 140, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
141 84 0.60
142 1 0.01
143 55 0.39
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (142 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTCGG
CCTTATCACACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACA
CAGTCACATTCA
Found at i:22508243 original size:12 final size:12
Alignment explanation
Indices: 22508226--22508250 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22508216 CTAGACATAC
22508226 AAAATAATAATA
1 AAAATAATAATA
22508238 AAAATAATAATA
1 AAAATAATAATA
22508250 A
1 A
22508251 CATCCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATAATAATA
Found at i:22509657 original size:25 final size:26
Alignment explanation
Indices: 22509620--22509670 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
22509610 GTTGTAAATC
22509620 AGAAAAATATCTTCAA-A-AATTTTCT
1 AGAAAAATATCTT-AAGAGAATTTTCT
* *
22509645 AGAATAATCTCTTAAGAGAATTTTCT
1 AGAAAAATATCTTAAGAGAATTTTCT
22509671 CTCTGCAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 12 0.55
26 8 0.36
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (26 bp):
AGAAAAATATCTTAAGAGAATTTTCT
Found at i:22509848 original size:64 final size:63
Alignment explanation
Indices: 22509767--22509891 Score: 171
Period size: 64 Copynumber: 2.0 Consensus size: 63
22509757 TGACTAAACT
* * *
22509767 TAATCACTTTTAATATTAAATTAATATAATATTTATCAAGAAAAATATTACATTAAATATTAAGA
1 TAATCACTTTTAATATTAAATTAATACAATA-CTATCAAGAAAAATATTAAATTAAAT-TTAAGA
* * *
22509832 TAATCAC-TTTAATATTAAATTAATACAATACTATTAAGATAAGTATTAAATTAAATTTAA
1 TAATCACTTTTAATATTAAATTAATACAATACTATCAAGAAAAATATTAAATTAAATTTAA
22509892 TATTAAACCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
62 4 0.07
63 21 0.39
64 22 0.41
65 7 0.13
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.40
Consensus pattern (63 bp):
TAATCACTTTTAATATTAAATTAATACAATACTATCAAGAAAAATATTAAATTAAATTTAAGA
Found at i:22510337 original size:19 final size:19
Alignment explanation
Indices: 22510313--22510352 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
22510303 AAAATATCAA
22510313 ATTAATTTTAATT-TACTTG
1 ATTAA-TTTAATTGTACTTG
22510332 ATTAATTTAATTGTACTTG
1 ATTAATTTAATTGTACTTG
22510351 AT
1 AT
22510353 CAAAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (19 bp):
ATTAATTTAATTGTACTTG
Found at i:22511802 original size:15 final size:15
Alignment explanation
Indices: 22511782--22511812 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22511772 TCTTGTTCAT
22511782 GCAATAGGCAATGTA
1 GCAATAGGCAATGTA
22511797 GCAATAGGCAATGTA
1 GCAATAGGCAATGTA
22511812 G
1 G
22511813 AATGATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.19
Consensus pattern (15 bp):
GCAATAGGCAATGTA
Found at i:22515965 original size:23 final size:23
Alignment explanation
Indices: 22515939--22515991 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
22515929 GGTATTTCGA
*
22515939 TGCAAATGATAGTGGCACTTAAG
1 TGCAAATGAAAGTGGCACTTAAG
* *
22515962 TGCAAGTGAAAGTGGCACTTTAG
1 TGCAAATGAAAGTGGCACTTAAG
22515985 TGCAAAT
1 TGCAAAT
22515992 TAGTGATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (23 bp):
TGCAAATGAAAGTGGCACTTAAG
Found at i:22518264 original size:29 final size:29
Alignment explanation
Indices: 22518200--22518293 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
22518190 AATACCAATT
* * *
22518200 TCTA-TAAAAGTGAGCCTTTGTGGTTATT
1 TCTATTAAAAGTGAGCCTTTGTTGCTATC
* * *
22518228 TTTGTTAAAAGTGAGCTTTTGTTGCTATC
1 TCTATTAAAAGTGAGCCTTTGTTGCTATC
22518257 TCTATT-AAAG-GAAGCCTTTG-TGTCTATC
1 TCTATTAAAAGTG-AGCCTTTGTTG-CTATC
22518285 TCTATTAAA
1 TCTATTAAA
22518294 TGGATGTCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.06
28 24 0.45
29 26 0.49
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.44
Consensus pattern (29 bp):
TCTATTAAAAGTGAGCCTTTGTTGCTATC
Found at i:22518321 original size:29 final size:29
Alignment explanation
Indices: 22518251--22518357 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
22518241 AGCTTTTGTT
* * * *
22518251 GCTATCTCTATTAAAGGAA-GCCTTTGTG
1 GCTATCTCTGTTAAATGAATGTCTTTATG
* * *
22518279 TCTATCTCTATTAAATGGATGTCTTTATG
1 GCTATCTCTGTTAAATGAATGTCTTTATG
* ** *
22518308 GCTATTTCTGTTAAAAAAATGTCTTTGTG
1 GCTATCTCTGTTAAATGAATGTCTTTATG
*
22518337 GCTATCTCAGTTAAATGAATG
1 GCTATCTCTGTTAAATGAATG
22518358 CATTGTAGCA
Statistics
Matches: 62, Mismatches: 16, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (29 bp):
GCTATCTCTGTTAAATGAATGTCTTTATG
Found at i:22520302 original size:9 final size:9
Alignment explanation
Indices: 22520288--22520319 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
22520278 GTGAAAGGAA
22520288 ATTTTGTGT
1 ATTTTGTGT
22520297 ATTTTGTGT
1 ATTTTGTGT
22520306 ATTTTGTGT
1 ATTTTGTGT
22520315 ATTTT
1 ATTTT
22520320 ATGAATTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.19, T:0.69
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:22539232 original size:39 final size:39
Alignment explanation
Indices: 22539115--22539377 Score: 338
Period size: 39 Copynumber: 6.6 Consensus size: 39
22539105 GCTCCTCGTT
*
22539115 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
22539155 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
22539195 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
22539234 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
22539273 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * * *
22539312 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGT-ATC-TCGCA
22539353 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
22539378 CAACATTCAA
Statistics
Matches: 204, Mismatches: 11, Indels: 15
0.89 0.05 0.07
Matches are distributed among these distances:
39 116 0.57
40 77 0.38
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:22547564 original size:49 final size:49
Alignment explanation
Indices: 22547508--22547613 Score: 203
Period size: 49 Copynumber: 2.2 Consensus size: 49
22547498 AGGCCATTTT
*
22547508 TGGGCTATGTGGGCCATACAAGAGTGTGGACCCACATGGGCCTACAATA
1 TGGGCTATGTGGGCCATACAAGAGTGTGGACCCACATGGGCCCACAATA
22547557 TGGGCTATGTGGGCCATACAAGAGTGTGGACCCACATGGGCCCACAATA
1 TGGGCTATGTGGGCCATACAAGAGTGTGGACCCACATGGGCCCACAATA
22547606 TGGGCTAT
1 TGGGCTAT
22547614 AGGCCCATTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (49 bp):
TGGGCTATGTGGGCCATACAAGAGTGTGGACCCACATGGGCCCACAATA
Found at i:22556685 original size:21 final size:21
Alignment explanation
Indices: 22556659--22556698 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22556649 CCTACTTTTC
*
22556659 TAGCCAAATATCCTTCTCTTG
1 TAGCCAAATATCCTCCTCTTG
*
22556680 TAGCCAAATCTCCTCCTCT
1 TAGCCAAATATCCTCCTCT
22556699 ACTAACTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.35, G:0.07, T:0.35
Consensus pattern (21 bp):
TAGCCAAATATCCTCCTCTTG
Found at i:22558568 original size:64 final size:64
Alignment explanation
Indices: 22558488--22558671 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
22558478 AGACATTATG
* * *
22558488 ATGTAGCTAGTTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
22558552 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAAACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
22558617 AA
63 AA
* * * * *
22558619 ACTG--GTTAGGTCACATGGGTGCTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
22558672 CGAACTATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 11
0.75 0.17 0.09
Matches are distributed among these distances:
63 19 0.20
64 20 0.21
65 8 0.09
66 15 0.16
67 30 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:22574379 original size:5 final size:5
Alignment explanation
Indices: 22574369--22574394 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22574359 AAAATTTGTT
22574369 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
22574395 AAATCTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:22577933 original size:43 final size:41
Alignment explanation
Indices: 22577813--22577969 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 41
22577803 AGCTCGTATA
* *
22577813 ATGCCGACGTACCAGACATGGTCTTACATATAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATA-AATCAAATAT-G
* * *
22577856 ATG-CGACTGTCCCAAACAGGGTCTTACATAAAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACAT-AAATCAAATATG
* *
22577898 ATGCCAACGTCCTAGACATGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACA--TAAATCA-AA-TATG
*
22577942 ATGCCAACGTCCCAGGCATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
22577970 CGATAACACA
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
42 25 0.26
43 40 0.41
44 31 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACATAAATCAAATATG
Found at i:22579782 original size:39 final size:39
Alignment explanation
Indices: 22579739--22579885 Score: 158
Period size: 39 Copynumber: 3.7 Consensus size: 39
22579729 TTGAATGCTG
* *
22579739 TCCGGGCTAAGTCCCGAAGGC-TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAA-A
* * *
22579778 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
22579818 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
*
22579857 TCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGC
22579886 AATCCGGGTT
Statistics
Matches: 93, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
39 53 0.57
40 32 0.34
41 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:22579828 original size:40 final size:40
Alignment explanation
Indices: 22579739--22579993 Score: 247
Period size: 40 Copynumber: 6.7 Consensus size: 40
22579729 TTGAATGCTG
*
22579739 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
22579778 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
22579818 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
22579857 TCCGGGTTAAGTCCCGAAGGCATTTGT----G---C--AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
22579888 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
22579928 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
22579969 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22579994 AACGAGGAGC
Statistics
Matches: 186, Mismatches: 12, Indels: 35
0.80 0.05 0.15
Matches are distributed among these distances:
31 28 0.15
33 1 0.01
35 1 0.01
36 1 0.01
38 1 0.01
39 53 0.28
40 88 0.47
41 12 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:22579893 original size:31 final size:31
Alignment explanation
Indices: 22579855--22579916 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
22579845 CGAGTTACTA
22579855 AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
*
22579886 AATCCGGGTTATGTCCCGAAGGCATTTGTGC
1 AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
22579917 GAGTTACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (31 bp):
AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
Found at i:22579984 original size:111 final size:110
Alignment explanation
Indices: 22579791--22579993 Score: 327
Period size: 111 Copynumber: 1.8 Consensus size: 110
22579781 GGACTAAGAT
* *
22579791 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
*
22579856 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAATCCGGGTTATGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAATCCGGGTTATGTC
* *
22579901 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA
*
22579966 TAA-CCGGGCTATGTCCCGAAGGCATTTG
65 -AATCCGGGCTAAGTCCCGAAGGCATTTG
22579994 AACGAGGAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
110 35 0.41
111 48 0.56
112 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (110 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAATCCGGGTTATGTC
Found at i:22585312 original size:79 final size:79
Alignment explanation
Indices: 22585117--22585336 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 79
22585107 TTGAATGCTG
* * * * *
22585117 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGT-ATGAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATT
* *
22585181 TGTGAGAGTTATTAAT
64 CGTGAGAGTTATTAAA
* ** * *
22585197 TCCGGGTTAAGTCCCGAAGCCTTTGTGCGAGATACTA-ATTCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTC
22585261 GT-ACGAGTT-TTAAAA
65 GTGA-GAGTTATT-AAA
* * *
22585276 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
22585337 CTTGAACGAG
Statistics
Matches: 116, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
78 5 0.04
79 86 0.74
80 25 0.22
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
TGAGAGTTATTAAA
Found at i:22585320 original size:39 final size:39
Alignment explanation
Indices: 22585118--22585346 Score: 155
Period size: 40 Copynumber: 5.8 Consensus size: 39
22585108 TGAATGCTGT
* * * * *
22585118 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTAC-GAGTTACTATAA
*
22585158 CCGGACTAAGAT-CCGAAGGCATTTGTGA-GAGTTA-T-TAA
1 CCGGGCTAAG-TCCCGAAGGCA-TTGT-ACGAGTTACTATAA
* * * * * *
22585196 TTCCGGGTTAAGTCCCGAAGCCTTTGTGCGAGATACTA-ATT
1 --CCGGGCTAAGTCCCGAAGGCATTGTACGAGTTACTATA-A
* * *
22585237 CCGGGTTAAGTCCCGAAGGCATTCGTACGAGTT-TTAAAA
1 CCGGGCTAAGTCCCGAAGGCATT-GTACGAGTTACTATAA
* *
22585276 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGTACGAGTTACTATAA
* *
22585316 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGCTAAGTCCCGAAGGCA-TTGTACGAG
22585347 GAGCTATATC
Statistics
Matches: 148, Mismatches: 26, Indels: 30
0.73 0.13 0.15
Matches are distributed among these distances:
38 2 0.01
39 61 0.41
40 80 0.54
41 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTACGAGTTACTATAA
Found at i:22593026 original size:40 final size:40
Alignment explanation
Indices: 22592942--22593123 Score: 192
Period size: 40 Copynumber: 4.5 Consensus size: 40
22592932 TTGAATGCTG
* * * *
22592942 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
22592981 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
22593022 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
22593062 TCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
22593102 TCCGGGTTAAGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
22593124 ATGTATGAGT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 110 0.90
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:22593079 original size:80 final size:81
Alignment explanation
Indices: 22592942--22593122 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
22592932 TTGAATGCTG
* *
22592942 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* * *
22593006 TGTGCGAGTTATT-AAT
66 CGTACGAGTT-TTAAAA
**
22593022 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
22593083 ATTCGTACGAGTTTTAAAA
63 ATTCGTACGAGTTTTAAAA
22593102 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
22593123 AATGTATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTACGAGTTTTAAAA
Found at i:22593146 original size:39 final size:38
Alignment explanation
Indices: 22592995--22593172 Score: 151
Period size: 40 Copynumber: 4.5 Consensus size: 38
22592985 GGACTAAGAT
* * *
22592995 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCA-TTGTACGAGTTACTAA-ACCGGGTTAAGTC
* * * *
22593035 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGG-CATTGTACGAGTTACTAA-ACCGGGTTAAGTC
*
22593075 CCGAAGGCATTCGTACGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTACGAGTTACT-AAA-CCGGGTTAAGTC
* * * *
22593115 CCGAAGGCAATGTATGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTGTACGAGTTACTA-AACCGGGTTAAGTC
*
22593154 CCGAAGGCACTTGAACGAG
1 CCGAAGGCA-TTGTACGAG
22593173 GAGCTATATC
Statistics
Matches: 115, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
39 32 0.28
40 82 0.71
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (38 bp):
CCGAAGGCATTGTACGAGTTACTAAACCGGGTTAAGTC
Found at i:22598735 original size:39 final size:39
Alignment explanation
Indices: 22598692--22598838 Score: 158
Period size: 39 Copynumber: 3.7 Consensus size: 39
22598682 TTGAATGCTG
* *
22598692 TCCGGGCTAAGTCCCGAAGGC-TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAA-A
* * *
22598731 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
22598771 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
*
22598810 TCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGC
22598839 AATCCGGGTT
Statistics
Matches: 93, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
39 53 0.57
40 32 0.34
41 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:22598781 original size:40 final size:40
Alignment explanation
Indices: 22598692--22598946 Score: 247
Period size: 40 Copynumber: 6.7 Consensus size: 40
22598682 TTGAATGCTG
*
22598692 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
22598731 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
22598771 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
22598810 TCCGGGTTAAGTCCCGAAGGCATTTGT----G---C--AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
22598841 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
22598881 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
22598922 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22598947 AACGAGGAGC
Statistics
Matches: 186, Mismatches: 12, Indels: 35
0.80 0.05 0.15
Matches are distributed among these distances:
31 28 0.15
33 1 0.01
35 1 0.01
36 1 0.01
38 1 0.01
39 53 0.28
40 88 0.47
41 12 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:22598846 original size:31 final size:31
Alignment explanation
Indices: 22598808--22598869 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
22598798 CGAGTTACTA
22598808 AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
*
22598839 AATCCGGGTTATGTCCCGAAGGCATTTGTGC
1 AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
22598870 GAGTTACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (31 bp):
AATCCGGGTTAAGTCCCGAAGGCATTTGTGC
Found at i:22598937 original size:111 final size:110
Alignment explanation
Indices: 22598744--22598946 Score: 327
Period size: 111 Copynumber: 1.8 Consensus size: 110
22598734 GGACTAAGAT
* *
22598744 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
*
22598809 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCAATCCGGGTTATGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAATCCGGGTTATGTC
* *
22598854 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA
*
22598919 TAA-CCGGGCTATGTCCCGAAGGCATTTG
65 -AATCCGGGCTAAGTCCCGAAGGCATTTG
22598947 AACGAGGAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
110 35 0.41
111 48 0.56
112 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (110 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAATCCGGGTTATGTC
Found at i:22607553 original size:5 final size:6
Alignment explanation
Indices: 22607535--22607563 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
22607525 AACCCTAATG
22607535 TTCTTT TTCTTT TTCTTT TTCTTT TTCTT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTT
22607564 GTATTTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTCTTT
Found at i:22609793 original size:40 final size:40
Alignment explanation
Indices: 22609695--22609957 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
22609685 TCCTCGTTCA
* * * * *
22609695 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22609734 AATGCCTTCGGGACATAACCCGGAGTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22609774 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22609814 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22609854 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
22609894 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22609934 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22609958 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22609966 original size:41 final size:41
Alignment explanation
Indices: 22609889--22609966 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
22609879 TTAGTATCTC
* * *
22609889 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
22609930 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
22609967 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:22617108 original size:40 final size:40
Alignment explanation
Indices: 22617010--22617312 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
22617000 TCCTCGTTCA
* * * * *
22617010 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
22617049 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22617089 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22617129 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22617169 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22617209 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
22617249 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22617289 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22617313 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22617321 original size:41 final size:41
Alignment explanation
Indices: 22617244--22617321 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
22617234 TTAGTATCTC
* * *
22617244 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
22617285 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
22617322 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:22626908 original size:55 final size:54
Alignment explanation
Indices: 22626821--22627072 Score: 241
Period size: 55 Copynumber: 4.7 Consensus size: 54
22626811 ATTAGGGTTT
* *
22626821 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTGAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTGA-GTTTCATAAGGC
* * * * * *
22626876 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACCATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTT-TCATAAGG-C
* *
22626932 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTTCATAAGGC
* * * *
22626984 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTTCATAAGGC
* * * * *
22627033 AAGGATACCACGTAAAACCATGACAAGTCATGGCAATGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGT
22627073 AAGGTACCTG
Statistics
Matches: 165, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 35 0.21
52 6 0.04
53 42 0.25
54 11 0.07
55 67 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTTCATAAGGC
Found at i:22627027 original size:108 final size:110
Alignment explanation
Indices: 22626828--22627028 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
22626818 TTTAAGGATA
*
22626828 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTGAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTGAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
22626893 CCATGTCAAGACATGGCATTGATAAGTTACCATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGAAAAGGTC
*
22626938 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTGAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
22627000 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
22627029 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 8 0.09
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTGAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGAAAAGGTC
Found at i:22635192 original size:39 final size:39
Alignment explanation
Indices: 22635081--22635210 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
22635071 GGACTAAGAT
* * *
22635081 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
22635121 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
22635161 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
22635200 CCGAAGGCATT
1 CCGAAGGCATT
22635211 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:22635230 original size:79 final size:79
Alignment explanation
Indices: 22635081--22635245 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
22635071 GGACTAAGAT
* * * ** ** *
22635081 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
22635146 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
22635161 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
22635225 TATCCGGTTAAATC
66 AATCCGGTTAAATC
22635239 CCGAAGG
1 CCGAAGG
22635246 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:22643041 original size:39 final size:39
Alignment explanation
Indices: 22642930--22643059 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
22642920 GGACTAAGAT
* * *
22642930 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
22642970 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
22643010 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
22643049 CCGAAGGCATT
1 CCGAAGGCATT
22643060 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:22643079 original size:79 final size:79
Alignment explanation
Indices: 22642930--22643094 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
22642920 GGACTAAGAT
* * * ** ** *
22642930 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
22642995 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
22643010 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
22643074 TATCCGGTTAAATC
66 AATCCGGTTAAATC
22643088 CCGAAGG
1 CCGAAGG
22643095 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:22649245 original size:40 final size:40
Alignment explanation
Indices: 22649176--22649381 Score: 315
Period size: 40 Copynumber: 5.2 Consensus size: 40
22649166 AACCCAAGTA
* * *
22649176 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22649215 CCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
22649255 CCTTCAGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22649295 CCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22649335 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22649375 CCTTCGG
1 CCTTCGG
22649382 ATCTTAGTTC
Statistics
Matches: 151, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.08
40 139 0.92
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22657291 original size:40 final size:40
Alignment explanation
Indices: 22657169--22657368 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
22657159 CAAACCAATA
* * *
22657169 CTTCGGGATTTAG-CCGGATATAGCAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
22657208 CTTCGGGACTTAGCCCGGATATAGTAAC-CGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
22657247 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
22657287 CTTCGGGACTTCGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
22657327 CTTCGAGAC--AGCCCGGATATAGTCACTAGCACAAAT-C
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
22657364 CTTCG
1 CTTCG
22657369 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
37 6 0.04
38 24 0.16
39 50 0.33
40 71 0.47
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:22657303 original size:79 final size:80
Alignment explanation
Indices: 22657169--22657368 Score: 302
Period size: 79 Copynumber: 2.6 Consensus size: 80
22657159 CAAACCAATA
* * *
22657169 CTTCGGGATTTAG-CCGGATATAGCAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
22657233 AAC-CGCACAAATGC
66 AACTCGCACAAATGC
*
22657247 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
22657312 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * *
22657327 CTTCGAGAC--AGCCCGGATATAGTCACTAGCACAAAT-CCTTCG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCG
22657369 ATCTTAGTCC
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 6 0.05
78 37 0.33
79 51 0.45
80 19 0.17
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATGC
Found at i:22672196 original size:13 final size:13
Alignment explanation
Indices: 22672178--22672206 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22672168 TCCGGAATCG
22672178 AACACGAGGTGCT
1 AACACGAGGTGCT
22672191 AACACGAGGTGCT
1 AACACGAGGTGCT
22672204 AAC
1 AAC
22672207 CAATAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.24, G:0.28, T:0.14
Consensus pattern (13 bp):
AACACGAGGTGCT
Found at i:22673571 original size:40 final size:40
Alignment explanation
Indices: 22673551--22673770 Score: 352
Period size: 40 Copynumber: 5.5 Consensus size: 40
22673541 GGTCGCTAGA
*
22673551 ACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTTACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGC
22673591 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
* *
22673631 ACAAATGCCTTCAGGACTTAGCCCGAAATTAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
22673671 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
* * * *
22673711 ACAAATGCCTTCGGGACTTAGCCCAGAATTAATCACTAGC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
*
22673751 ACAAATGTCTTCGGGACTTA
1 ACAAATGCCTTCGGGACTTA
22673771 ACCCCGTTAG
Statistics
Matches: 169, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 167 0.99
41 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGC
Found at i:22680231 original size:39 final size:39
Alignment explanation
Indices: 22680187--22680343 Score: 269
Period size: 39 Copynumber: 4.0 Consensus size: 39
22680177 AATTATATTA
*
22680187 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
22680226 CCAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
22680265 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
22680304 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
22680343 C
1 C
22680344 TAGTGTCTTG
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:22682169 original size:19 final size:19
Alignment explanation
Indices: 22682134--22682171 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22682124 TGCAATTTTA
*
22682134 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
22682153 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
22682172 TCCGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:22684462 original size:40 final size:40
Alignment explanation
Indices: 22684402--22684584 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
22684392 TATTCGAATG
* * *
22684402 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGACTAAGAT-CCGAAGGCATTTATGCTAGCGACT
* * *
22684442 ATATCCGGACTAAGATCCGAAGGCATTTGTG-AAGTTG-CT
1 ATATCCGGACTAAGATCCGAAGGCATTTATGCTAG-CGACT
* *
22684481 ATATCCAGG-CTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCC-GGACTAAGATCCGAAGGCATTTATGCTAGCGACT
* * *
22684521 ATATCCGGGCTAAG-TCCCAAAGGCATTTATGCTAGCGACC
1 ATATCCGGACTAAGAT-CCGAAGGCATTTATGCTAGCGACT
*
22684561 ATATCC-GAGCTAAGACCCGAAGGC
1 ATATCCGGA-CTAAGATCCGAAGGC
22684585 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
39 35 0.29
40 84 0.70
41 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTATGCTAGCGACT
Found at i:22684534 original size:79 final size:79
Alignment explanation
Indices: 22684402--22684548 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 79
22684392 TATTCGAATG
* * * * *
22684402 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCAAAGGC
22684466 ATTTGTGAAGTTGCT
65 ATTTGTGAAGTTGCT
* *
22684481 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCAAAGGCA
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCAAAGGCA
22684546 TTT
66 TTT
22684549 ATGCTAGCGA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.02
79 59 0.98
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (79 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCAAAGGCA
TTTGTGAAGTTGCT
Found at i:22684591 original size:79 final size:79
Alignment explanation
Indices: 22684402--22684584 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
22684392 TATTCGAATG
* * * * * *
22684402 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGACTAAGATCCAAAGGCA
* * *
22684467 TTTGTGAAGTTGCT
66 TTTATGAAGTCGCC
*
22684481 ATATCC-AGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAG-TCCCAAAGG
1 ATATCCGA-GCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGACTAAGAT-CCAAAGG
*
22684544 CATTTATGCTAG-CGACC
64 CATTTATG-AAGTCG-CC
22684561 ATATCCGAGCTAAGACCCGAAGGC
1 ATATCCGAGCTAAGACCCGAAGGC
22684585 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 61 0.69
80 25 0.28
81 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (79 bp):
ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGACTAAGATCCAAAGGCA
TTTATGAAGTCGCC
Found at i:22691706 original size:40 final size:40
Alignment explanation
Indices: 22691646--22691829 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
22691636 TATTCGAATG
* * *
22691646 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCCAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGCGACT
* * * *
22691686 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-CGACT
* *
22691726 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGCGACT
*
22691766 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGCGACT
*
22691806 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
22691830 CTTGTGCGAG
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 123 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGCGACT
Found at i:22691779 original size:80 final size:80
Alignment explanation
Indices: 22691646--22691829 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
22691636 TATTCGAATG
* * *
22691646 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCCAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* * *
22691710 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-CGACC
* * *
22691726 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
22691791 TTTATGCTAGCGACC
66 TTTATGCGAGCGACC
22691806 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22691830 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.02
80 90 0.98
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGCGACC
Done.