Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 74 of 373
Found at i:22705170 original size:42 final size:43
Alignment explanation
Indices: 22705092--22705193 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
22705082 ATCGATTTGA
* *
22705092 GATTTACGTGTAAGACCATATCTGGGACATTAGCATCG-TATAT
1 GATTT-CGTGTAAGACCATATCTAGGACAGTAGCATCGATATAT
* * * * *
22705135 GATTTCGTGTAAGACCCTGTCTAGGATAGTGGCATCGATATTT
1 GATTTCGTGTAAGACCATATCTAGGACAGTAGCATCGATATAT
* *
22705178 GATTACATGTAAGACC
1 GATTTCGTGTAAGACC
22705194 TCATCTGGGA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATATCTAGGACAGTAGCATCGATATAT
Found at i:22705211 original size:43 final size:43
Alignment explanation
Indices: 22705068--22705212 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 43
22705058 TAAAACCACG
* *
22705068 TCTGGGACGTTGCCATCGAT-TTGAGATTTACGTGTAAGACCAT-A
1 TCTGGGACGTTGGCATCGATATT-TGA-TTACGTGTAAGACC-TCA
* * * * *
22705112 TCTGGGACATTAGCATCG-TATATGATTTCGTGTAAGACC-CTG
1 TCTGGGACGTTGGCATCGATATTTGATTACGTGTAAGACCTC-A
* * *
22705154 TCTAGGATAG-TGGCATCGATATTTGATTACATGTAAGACCTCA
1 TCTGGGA-CGTTGGCATCGATATTTGATTACGTGTAAGACCTCA
*
22705197 TCTGGGATGTTGGCAT
1 TCTGGGACGTTGGCAT
22705213 TGTATGAGCT
Statistics
Matches: 77, Mismatches: 17, Indels: 15
0.71 0.16 0.14
Matches are distributed among these distances:
42 27 0.35
43 33 0.43
44 17 0.22
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TCTGGGACGTTGGCATCGATATTTGATTACGTGTAAGACCTCA
Found at i:22707508 original size:31 final size:31
Alignment explanation
Indices: 22707466--22707575 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
22707456 TTTAACGGTT
22707466 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * *
22707497 TCTAGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
22707528 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
22707559 ACTGGGCCGAAGCCTTA
1 ACTGGGCCGAAGCCTTA
22707576 CTGTAAACGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:22707850 original size:25 final size:24
Alignment explanation
Indices: 22707780--22707861 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
22707770 CTGGAGGCCT
*
22707780 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
22707804 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* * *
22707828 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
22707853 AGCCCTTTT
1 AGCCCTTTT
22707862 AACACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 7 0.13
24 24 0.46
25 21 0.40
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:22708698 original size:27 final size:27
Alignment explanation
Indices: 22708668--22708732 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
22708658 GGGCATATTC
22708668 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
22708695 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
22708722 GTCTTTTTACC
1 GTCATTTTACC
22708733 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:22708734 original size:26 final size:26
Alignment explanation
Indices: 22708668--22708772 Score: 77
Period size: 27 Copynumber: 3.9 Consensus size: 26
22708658 GGGCATATTC
22708668 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* *
22708695 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAAGGG-TATTACG
* * * ***
22708722 GTCTTTTTACCTATTAGGGGTATTTTA
1 GTCATTTTACCTA-CAAGGGTATTACG
*
22708749 GTCATTTCATCCTACAAGGGTATT
1 GTCATTTTA-CCTACAAGGGTATT
22708773 TTGGTAAATC
Statistics
Matches: 61, Mismatches: 12, Indels: 10
0.73 0.14 0.12
Matches are distributed among these distances:
26 5 0.08
27 49 0.80
28 7 0.11
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:22708834 original size:27 final size:27
Alignment explanation
Indices: 22708763--22708948 Score: 153
Period size: 27 Copynumber: 6.8 Consensus size: 27
22708753 TTTCATCCTA
* * *
22708763 CAAGGGTATTT-TGGTAAATCTACAAAC
1 CAAGGGTATTTCT-GTAATTTTATAAAC
* *
22708790 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCTGTAATTTTATAAAC
* *
22708817 CAAGGGTATTTCTGTAATTTTTAAAAAGT
1 CAAGGGTATTTCTGTAA-TTTTATAAA-C
* *
22708846 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTATAAAC
* *
22708873 CAGGGGTATTT-TGGTAATTTTATAAAT
1 CAAGGGTATTTCT-GTAATTTTATAAAC
** * * *
22708900 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCTGTAATTTTATAAAC
*
22708927 C-AGTGGTATTTCAGTAATTTTA
1 CAAG-GGTATTTCTGTAATTTTA
22708949 CAAATTAGGG
Statistics
Matches: 130, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
26 3 0.02
27 96 0.74
28 14 0.11
29 17 0.13
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTATAAAC
Found at i:22708856 original size:56 final size:55
Alignment explanation
Indices: 22708790--22708964 Score: 169
Period size: 54 Copynumber: 3.2 Consensus size: 55
22708780 ATCTACAAAC
22708790 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTGTAATTTTTAAAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTGTAATTTTTAAAAA-T
* * * *
22708846 CAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTT-TGGTAA-TTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-GTAATTTTTAAAAAT
** * *** * *
22708900 TGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTCAGTAA-TTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAG-GGTATTTCTGTAATTTTTAAAAAT
* *
22708954 TAGGGGTATTT
1 CAAGGGTATTT
22708965 TGGTAATTCT
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 51 0.51
55 9 0.09
56 39 0.39
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTGTAATTTTTAAAAAT
Found at i:22708961 original size:27 final size:27
Alignment explanation
Indices: 22708783--22709005 Score: 144
Period size: 27 Copynumber: 8.2 Consensus size: 27
22708773 TTGGTAAATC
* *
22708783 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
** * * *
22708810 TGTAAACCAAGGGTATTTCTGTAATTTT
1 TACAAATCAGGGGTATTTCAGTAA-TTT
* * *
22708838 TAAAAAGTCAAGGGTATTTCTGTAATTT
1 TACAAA-TCAGGGGTATTTCAGTAATTT
** **
22708866 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
* * *
22708893 TATAAAT-TGAGGGTATTTCGGTAATTT
1 TACAAATCAG-GGGTATTTCAGTAATTT
* * *
22708920 CACAAACCAGTGGTATTTCAGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
* ** *
22708947 TACAAATTAGGGGTATTTTGGTAATTC
1 TACAAATCAGGGGTATTTCAGTAATTT
** *
22708974 TATCCTAT-AGGGGTATTTTAGTAATTT
1 TA-CAAATCAGGGGTATTTCAGTAATTT
*
22709001 CACAA
1 TACAA
22709006 TCGAGGGTAA
Statistics
Matches: 157, Mismatches: 34, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
26 2 0.01
27 120 0.76
28 18 0.11
29 17 0.11
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAGGGGTATTTCAGTAATTT
Found at i:22708988 original size:81 final size:81
Alignment explanation
Indices: 22708850--22709005 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
22708840 AAAAGTCAAG
* ** * * *
22708850 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGT
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTATAAATAGAGGGTATTTCAGT
22708915 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* ** *
22708931 GGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGTAATTCTATCCTATAG-GGGTATTTTAG
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTAT-AAATAGAGGGTATTTCAG
22708995 TAATTTCACAA
65 TAATTTCACAA
22709006 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 61 0.95
82 3 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTATAAATAGAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:22709142 original size:54 final size:54
Alignment explanation
Indices: 22709004--22709133 Score: 210
Period size: 54 Copynumber: 2.4 Consensus size: 54
22708994 GTAATTTCAC
22709004 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC-AAGGGTAAAATGGTAATTTTATA
*
22709058 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTTTATA
*
22709112 AA-CTGAGGGTAAAATGGTAATT
1 AATC-GAGGGTAAAACGGTAATT
22709134 CTACAAATCG
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
53 1 0.01
54 70 0.97
55 1 0.01
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTTTATA
Found at i:22709146 original size:27 final size:27
Alignment explanation
Indices: 22709004--22709147 Score: 184
Period size: 27 Copynumber: 5.3 Consensus size: 27
22708994 GTAATTTCAC
*
22709004 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
22709031 AA-CTAAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
*
22709058 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
22709085 AATCAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
22709112 AA-CTGAGGGTAAAATGGTAATTCTACA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
22709139 AATCGAGGG
1 AATCGAGGG
22709148 CATTTCAGTA
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.02
27 97 0.96
28 2 0.02
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:22709159 original size:81 final size:81
Alignment explanation
Indices: 22709004--22709166 Score: 227
Period size: 81 Copynumber: 2.0 Consensus size: 81
22708994 GTAATTTCAC
* * * *
22709004 AATCGAGGGTAAAACGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTCTACAAATCGAGGGCA
* *
22709069 AAACGGTAATTTTGTA
66 AAACAGTAATTTGGTA
* *
22709085 AATCAAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTACAAATCGAGGGCA
1 AATCAAGGGTAAAACGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTCTACAAATCGAGGGCA
***
22709150 TTTCAGTAATTTGGTA
66 AAACAGTAATTTGGTA
22709166 A
1 A
22709167 GCTAAAGTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTCTACAAATCGAGGGCA
AAACAGTAATTTGGTA
Found at i:22738866 original size:20 final size:20
Alignment explanation
Indices: 22738838--22738877 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22738828 ACCCATGATC
*
22738838 TTTGAATTGACAATCTAGCG
1 TTTGAATTGAAAATCTAGCG
*
22738858 TTTGCATTGAAAATCTAGCG
1 TTTGAATTGAAAATCTAGCG
22738878 GCATTACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (20 bp):
TTTGAATTGAAAATCTAGCG
Found at i:22741008 original size:28 final size:27
Alignment explanation
Indices: 22740930--22741017 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
22740920 CAGCATGGTT
* * *
22740930 ACCAG-AACAGATATAGTGACAGAGTC
1 ACCAGAAACAGATATTGTGGCAGAGCC
*
22740956 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGAAACAGATATTGTGGCAGAGCC
* *
22740983 ACTAGAAACAGATATTTGTGGTAGAGCC
1 ACCAGAAACAGATA-TTGTGGCAGAGCC
22741011 ACCAGAA
1 ACCAGAA
22741018 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.10
27 29 0.56
28 18 0.35
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (27 bp):
ACCAGAAACAGATATTGTGGCAGAGCC
Found at i:22741149 original size:26 final size:27
Alignment explanation
Indices: 22741120--22741183 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
22741110 CAAAATTAAC
*
22741120 CCTAGGGGTATAATTGTAATTTT-ACA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
22741146 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
22741173 CTTAGGGGTAT
1 CCTAGGGGTAT
22741184 TTTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATTTTCACA
Found at i:22742909 original size:15 final size:15
Alignment explanation
Indices: 22742889--22742917 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22742879 CTAAACATAC
22742889 AAAATAATAATAATA
1 AAAATAATAATAATA
22742904 AAAATAATAATAAT
1 AAAATAATAATAAT
22742918 GATAACATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAATAATAATA
Found at i:22744920 original size:27 final size:28
Alignment explanation
Indices: 22744890--22744957 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
22744880 TATTGTGAAT
* *
22744890 AGAGTCACCAGATACAAATA-TTGTGGC
1 AGAGCCACCAGAAACAAATATTTGTGGC
* *
22744917 AGAGCCACCAGAAATAGATATTTGTGGC
1 AGAGCCACCAGAAACAAATATTTGTGGC
22744945 AGAGCCACCAGAA
1 AGAGCCACCAGAA
22744958 CGCTTCCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (28 bp):
AGAGCCACCAGAAACAAATATTTGTGGC
Found at i:22746209 original size:25 final size:22
Alignment explanation
Indices: 22746155--22746209 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
22746145 TTTCAACCAG
22746155 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
22746177 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
22746202 AGGAAGAA
1 A-GAAGAA
22746210 TTCAGCATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:22749129 original size:19 final size:20
Alignment explanation
Indices: 22749085--22749129 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
22749075 GGATTCAACG
22749085 GACAT-AAAACTCTTGATAT
1 GACATGAAAACTCTTGATAT
*
22749104 GGCATGAAAA-TCTTGATAT
1 GACATGAAAACTCTTGATAT
*
22749123 GATATGA
1 GACATGA
22749130 TAATGACTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (20 bp):
GACATGAAAACTCTTGATAT
Found at i:22757847 original size:60 final size:59
Alignment explanation
Indices: 22757720--22757858 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
22757710 TTTAGTGTTA
* *
22757720 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
* *
22757781 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
22757841 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
22757859 TGACACAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 3 0.04
60 51 0.74
61 12 0.17
62 3 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:22757876 original size:20 final size:19
Alignment explanation
Indices: 22757851--22757906 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
22757841 ATTGGGCCTT
*
22757851 GCCCATATTGACACAGTTGG
1 GCCCATATTAACACAGTT-G
* *
22757871 GCCCATTTTAATACAGTTG
1 GCCCATATTAACACAGTTG
* *
22757890 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
22757907 ATCATATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (19 bp):
GCCCATATTAACACAGTTG
Found at i:22760635 original size:27 final size:27
Alignment explanation
Indices: 22760605--22760782 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
22760595 ATATTGAGTC
* *
22760605 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22760632 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
22760659 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22760687 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22760714 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
22760741 CGCACACTTAATGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
22760768 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22760783 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22760744 original size:82 final size:81
Alignment explanation
Indices: 22760626--22760781 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
22760616 TGCTATATAA
* * *
22760626 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAATGCAACATAGTCAAA-TCGCA
22760691 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22760708 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAATGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAATGCAACATAGTCAAATCGCA
22760772 CACTTAGTGC
65 CACTTAGTGC
22760782 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAATGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22768575 original size:27 final size:27
Alignment explanation
Indices: 22768545--22768722 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22768535 ATATTGAGTC
* * * *
22768545 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22768572 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22768599 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22768627 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22768654 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22768681 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22768708 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22768723 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22768684 original size:82 final size:81
Alignment explanation
Indices: 22768566--22768721 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22768556 TGCTATATAA
* *
22768566 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22768631 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22768648 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22768712 CACTTAGTGC
65 CACTTAGTGC
22768722 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22771440 original size:3 final size:3
Alignment explanation
Indices: 22771432--22771467 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
22771422 TAAAAACTAA
* *
22771432 AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22771468 GAAAATTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22776897 original size:27 final size:26
Alignment explanation
Indices: 22776866--22776936 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 26
22776856 AATCTCATAT
*
22776866 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGG-TAGAATTACTGAAATACCC
* *
22776893 TTGTAGAGTAGAATTACTGAAATGCCC
1 CTGTAG-GTAGAATTACTGAAATACCC
22776920 CTGTAGGGTAGAATTAC
1 CTGTA-GGTAGAATTAC
22776937 CAAAACACCC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 36 0.95
28 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (26 bp):
CTGTAGGTAGAATTACTGAAATACCC
Found at i:22777014 original size:27 final size:27
Alignment explanation
Indices: 22776931--22777107 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22776921 TGTAGGGTAG
* * * *
22776931 AATTACCAAAACACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
22776958 AAATACAAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
22776985 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
22777012 AATTACC-AAATACCTCTAAATTT-TGA
1 AATTACCAAAATACCCCT-AGTTTGTAA
** * **
22777038 AATTACTGAAATA-CCCTCGACCTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* * *
22777065 AATTACTAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
22777092 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
22777108 TCAATTTATA
Statistics
Matches: 123, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 21 0.17
27 100 0.81
28 2 0.02
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:22777122 original size:27 final size:27
Alignment explanation
Indices: 22776928--22777151 Score: 107
Period size: 27 Copynumber: 8.3 Consensus size: 27
22776918 CCCTGTAGGG
* * *
22776928 TAGAATTACCAAAACACCCTTGGTTTA
1 TAGAATTACCAAAATACCCTCGATTTA
* * * * *
22776955 TAAAAATACAAAAATACCC-CTAGTTTG
1 TAGAATTACCAAAATACCCTCGA-TTTA
* * *
22776982 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAGAATTACCAAAATACCCTCGA-TTTA
* **
22777009 TAAAATTACC-AAATACCTCTAAATTT-
1 TAGAATTACCAAAATACC-CTCGATTTA
** ** *
22777035 T-GAAATTACTGAAATACCCTCGACCTG
1 TAG-AATTACCAAAATACCCTCGATTTA
* * * *
22777062 TAAAATTACTAAAATACCCTCGACTTG
1 TAGAATTACCAAAATACCCTCGATTTA
* * *
22777089 TAAAATTACCAAAGTACCCTCAATTTA
1 TAGAATTACCAAAATACCCTCGATTTA
****
22777116 TAGAATTACCGTTTTACCCTCGATTTA
1 TAGAATTACCAAAATACCCTCGATTTA
22777143 TAGAATTAC
1 TAGAATTAC
22777152 TGTTTTACCC
Statistics
Matches: 158, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
26 18 0.11
27 139 0.88
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TAGAATTACCAAAATACCCTCGATTTA
Found at i:22777161 original size:81 final size:81
Alignment explanation
Indices: 22777076--22777259 Score: 242
Period size: 81 Copynumber: 2.3 Consensus size: 81
22777066 ATTACTAAAA
* * * *
22777076 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
*
22777141 TATAGAATTACTGTTT
66 TATAGAATTACCGTTT
* ***** ** *
22777157 TACCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
22777222 TATAGAATTACCGTTT
66 TATAGAATTACCGTTT
22777238 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAAAATTAC
22777260 TGTGACACCC
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
TATAGAATTACCGTTT
Found at i:22777269 original size:27 final size:27
Alignment explanation
Indices: 22777103--22777262 Score: 239
Period size: 27 Copynumber: 5.9 Consensus size: 27
22777093 ATTACCAAAG
* * *
22777103 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
22777130 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
22777157 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
22777184 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
22777211 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
22777238 TACCCTCGATTTATAAAATTACTGT
1 TACCCTCGATTTATAAAATTACTGT
22777263 GACACCCCTA
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTGTTT
Found at i:22780716 original size:40 final size:39
Alignment explanation
Indices: 22780685--22780894 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
22780675 GGACTAAGAT
* *
22780685 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
22780725 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
22780765 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
22780805 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
22780845 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
22780884 CCGAAGGCATT
1 CCGAAGGCATT
22780895 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:22780848 original size:120 final size:120
Alignment explanation
Indices: 22780632--22780894 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
22780622 TTGAATGCTG
* *
22780632 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
22780696 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
22780752 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
22780815 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
22780871 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22780895 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:22780914 original size:79 final size:80
Alignment explanation
Indices: 22780633--22780929 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
22780623 TGAATGCTGT
* ** * * * **
22780633 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
22780696 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
22780713 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
22780777 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
22780793 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
22780857 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
22780872 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
22780930 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:22788553 original size:40 final size:39
Alignment explanation
Indices: 22788522--22788731 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
22788512 GGACTAAGAT
* *
22788522 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
22788562 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
22788602 CCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
22788642 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
22788682 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
22788721 CCGAAGGCATT
1 CCGAAGGCATT
22788732 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 34 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:22788751 original size:79 final size:80
Alignment explanation
Indices: 22788470--22788766 Score: 221
Period size: 80 Copynumber: 3.7 Consensus size: 80
22788460 TGAATGCTGT
* ** * * * **
22788470 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
22788533 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * ** *
22788550 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCAAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
22788614 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
22788630 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
22788694 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
22788709 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
22788767 TACGTGATTT
Statistics
Matches: 181, Mismatches: 30, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 108 0.60
81 11 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:22791137 original size:47 final size:47
Alignment explanation
Indices: 22791083--22791320 Score: 316
Period size: 47 Copynumber: 5.1 Consensus size: 47
22791073 TTAGGATTTT
** *
22791083 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
22791130 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
22791177 ATGTGATGAACGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
22791224 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * * *
22791271 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGT-GAACATGTATATATGTGATAAGGCCGAATGGCCA
22791318 ATG
1 ATG
22791321 CGAAATGTGT
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 167 0.98
48 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:22791205 original size:25 final size:25
Alignment explanation
Indices: 22791177--22791255 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
22791167 CGAATGACCA
22791177 ATGTGATGAACGTGAATATGCATAT
1 ATGTGATGAACGTGAATATGCATAT
* * * *
22791202 ATGTGAT-AAGGCCGAAT-GGC-CA-
1 ATGTGATGAACG-TGAATATGCATAT
* *
22791224 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAACGTGAATATGCATAT
22791249 ATGTGAT
1 ATGTGAT
22791256 AAGGCAGAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 10 0.25
23 6 0.15
24 6 0.15
25 18 0.45
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAACGTGAATATGCATAT
Found at i:22791230 original size:22 final size:22
Alignment explanation
Indices: 22791156--22791230 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
22791146 CATGTATATG
*
22791156 TGTGATAAGGCCGAATGACCAA
1 TGTGATAAGGCCGAATGGCCAA
* * * *
22791178 TGTGATGAACG-TGAATATGCATATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
22791203 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
22791225 TGTGAT
1 TGTGAT
22791231 GAATGTGAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 17 0.44
23 5 0.13
24 6 0.15
25 11 0.28
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:22791277 original size:22 final size:22
Alignment explanation
Indices: 22791202--22791277 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
22791192 ATATGCATAT
*
22791202 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
22791224 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
22791248 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
22791271 ATGTGAT
1 ATGTGAT
22791278 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:22791299 original size:94 final size:94
Alignment explanation
Indices: 22791083--22791320 Score: 352
Period size: 94 Copynumber: 2.5 Consensus size: 94
22791073 TTAGGATTTT
* *
22791083 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAACGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
22791148 TGTATATGTGTGATAAGGCCGAATGACCA
66 TGCATATATGTGATAAGGCAGAATGACCA
* *
22791177 ATGTGATGAACGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAACGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
22791242 TGCATATATGTGATAAGGCAGAATGGCCA
66 TGCATATATGTGATAAGGCAGAATGACCA
* * * *
22791271 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCTGAATGGCTAATG
1 ATGTGATGAACGT-GAATGTGTATATATGTGATAAGGCCGAATGGCCAATG
22791321 CGAAATGTGT
Statistics
Matches: 129, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 126 0.98
95 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAACGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCAGAATGACCA
Found at i:22791350 original size:46 final size:46
Alignment explanation
Indices: 22791294--22791430 Score: 195
Period size: 46 Copynumber: 3.0 Consensus size: 46
22791284 GGAAGTGTAT
* *
22791294 ATATGTGGTAAAGCTGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
22791340 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
22791386 ATAT-ATGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGA-GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
22791431 TGTATATGTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 81 0.99
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:22793209 original size:40 final size:40
Alignment explanation
Indices: 22792934--22793198 Score: 404
Period size: 40 Copynumber: 6.6 Consensus size: 40
22792924 GTTATATATG
*
22792934 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
22792974 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTTGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
22793014 ATCTGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* *
22793054 ATCCGGGCTAAGTCCCGAAGAGCATACATGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * *
22793094 ATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * * *
22793134 ATCAGGGTTAAGTCCCAAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
22793174 ATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCAT
22793199 TCACGCTGGT
Statistics
Matches: 205, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 205 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
Found at i:22797198 original size:47 final size:47
Alignment explanation
Indices: 22797144--22797380 Score: 316
Period size: 47 Copynumber: 5.1 Consensus size: 47
22797134 TTAGGATTTT
** *
22797144 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
22797191 ATGTGATGAATGTGAACATGTA-ATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
22797237 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
22797284 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * ** *
22797331 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAACCGAATGGCTA
1 ATGTGATGAATGT-GAACATGTATATATGTGATAAGGCCGAATGGCCA
22797378 ATG
1 ATG
22797381 CGAAATGTGT
Statistics
Matches: 169, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
46 41 0.24
47 125 0.74
48 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:22797252 original size:93 final size:93
Alignment explanation
Indices: 22797144--22797358 Score: 324
Period size: 93 Copynumber: 2.3 Consensus size: 93
22797134 TTAGGATTTT
*
22797144 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAACGTGAA-GTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
22797209 TGTA-ATGTGTGATAAGGCCGAATGACCA
65 TGCATATATGTGATAAGGCAGAATGACCA
* * *
22797237 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAACGTGAA-GTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
22797302 TGCATATATGTGATAAGGCAGAATGGCCA
65 TGCATATATGTGATAAGGCAGAATGACCA
22797331 ATGTGATGAACGTGGAAGTGTATATATG
1 ATGTGATGAACGT-GAAGTGTATATATG
22797359 TGGTAAAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
93 63 0.58
94 43 0.39
95 3 0.03
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (93 bp):
ATGTGATGAACGTGAAGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
GCATATATGTGATAAGGCAGAATGACCA
Found at i:22797337 original size:22 final size:22
Alignment explanation
Indices: 22797262--22797337 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
22797252 ACATGCATAT
*
22797262 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
22797284 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
22797308 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
22797331 ATGTGAT
1 ATGTGAT
22797338 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:22797421 original size:46 final size:46
Alignment explanation
Indices: 22797354--22797499 Score: 211
Period size: 46 Copynumber: 3.1 Consensus size: 46
22797344 GGAAGTGTAT
*
22797354 ATATGTGGTAAAACCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
22797400 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
22797446 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATGTG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG-G
22797493 TATATGT
1 -ATATGT
22797500 ATATATTGTG
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 82 0.92
47 1 0.01
48 6 0.07
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:22799075 original size:6 final size:6
Alignment explanation
Indices: 22799044--22799112 Score: 79
Period size: 6 Copynumber: 11.3 Consensus size: 6
22799034 TTGCATTCAC
* *
22799044 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
22799093 ATTCTG ATTCT- ATTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
22799113 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 46 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:22808467 original size:46 final size:46
Alignment explanation
Indices: 22808414--22808587 Score: 187
Period size: 45 Copynumber: 3.8 Consensus size: 46
22808404 ATTTGGGCAC
22808414 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* * *
22808460 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--T
* * **
22808507 CCGAGCTCGTTGAGTTGAGTCCGAGTCCACTTATGGATGCGAA-CA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* *
22808552 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22808588 TGGGTTACAT
Statistics
Matches: 107, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 37 0.35
46 28 0.26
47 27 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
Found at i:22810964 original size:23 final size:23
Alignment explanation
Indices: 22810920--22810964 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22810910 ACTCAAACGG
* *
22810920 CCAAAATGATCATCAACTTATAA
1 CCAAAATGACCATCAACCTATAA
22810943 CCAAAATGACCAT-AATCCTATA
1 CCAAAATGACCATCAA-CCTATA
22810965 CATGCCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.24
Consensus pattern (23 bp):
CCAAAATGACCATCAACCTATAA
Found at i:22822549 original size:39 final size:40
Alignment explanation
Indices: 22822488--22822572 Score: 145
Period size: 39 Copynumber: 2.1 Consensus size: 40
22822478 NNNNNNNNNN
*
22822488 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 GCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTA
*
22822528 GCCCGGA-ATAGTCACTAGCACAAATGCCTTCGGGACTTA
1 GCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTA
22822567 GCCCGG
1 GCCCGG
22822573 TTATCATCCG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 36 0.84
40 7 0.16
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (40 bp):
GCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTA
Found at i:22828340 original size:15 final size:16
Alignment explanation
Indices: 22828314--22828343 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22828304 TTCTATTAAT
22828314 TTATTAAAATAAAATC
1 TTATTAAAATAAAATC
22828330 TTATT-AAATAAAAT
1 TTATTAAAATAAAAT
22828344 ATGATCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
TTATTAAAATAAAATC
Found at i:22828526 original size:29 final size:30
Alignment explanation
Indices: 22828470--22828528 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
22828460 GCCTTTCAAA
* *
22828470 AATATTTACAAAAAAGAGACATCTAATTTT
1 AATATTTACAAAAAAGAGACACCAAATTTT
22828500 AATATTTAC-AAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAAGAGAC-ACCAAATTTT
22828529 GAAAATAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 16 0.62
30 9 0.35
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAAGAGACACCAAATTTT
Found at i:22834585 original size:42 final size:42
Alignment explanation
Indices: 22834538--22834621 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
22834528 TTGATGAAGA
* *
22834538 AAAATATATTGATTTGACAAGGTGGTTAAAAACTAAGATTTT
1 AAAATATATTGATTTGACAAGGAGATTAAAAACTAAGATTTT
* *
22834580 AAAATATTTTGATTTGACTAGGAGATTAAAAACTAAGATTTT
1 AAAATATATTGATTTGACAAGGAGATTAAAAACTAAGATTTT
22834622 TAGCTAAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.37
Consensus pattern (42 bp):
AAAATATATTGATTTGACAAGGAGATTAAAAACTAAGATTTT
Found at i:22836173 original size:10 final size:10
Alignment explanation
Indices: 22836149--22836196 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
22836139 CAAATCTGTC
* *
22836149 AAAAATAATC
1 AAAATTAATT
22836159 AAAATTAATT
1 AAAATTAATT
*
22836169 AAAATTTTATAT
1 AAAA-TTAAT-T
22836181 AAAATTAATT
1 AAAATTAATT
22836191 AAAATT
1 AAAATT
22836197 CAAAATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 19 0.59
11 8 0.25
12 5 0.16
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:22839506 original size:9 final size:10
Alignment explanation
Indices: 22839468--22839536 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 10
22839458 GAAGTACTAG
22839468 TTTTATA-AA
1 TTTTATATAA
22839477 TTTT-TA-ATA
1 TTTTATATA-A
*
22839486 TTTT-TATCA
1 TTTTATATAA
22839495 TTTTAT-TAA
1 TTTTATATAA
22839504 TTTTATATAA
1 TTTTATATAA
*
22839514 TTTTCTATAA
1 TTTTATATAA
22839524 CTCTTT-TATAA
1 -T-TTTATATAA
22839535 TT
1 TT
22839537 ATTTATGATC
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
8 3 0.06
9 25 0.49
10 14 0.27
11 6 0.12
12 3 0.06
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTATATAA
Found at i:22839516 original size:10 final size:9
Alignment explanation
Indices: 22839468--22839557 Score: 58
Period size: 10 Copynumber: 9.2 Consensus size: 9
22839458 GAAGTACTAG
22839468 TTTTATAAAT
1 TTTTAT-AAT
22839478 TTTTA-ATAT
1 TTTTATA-AT
*
22839487 TTTTATCA-
1 TTTTATAAT
22839495 TTTTATTAAT
1 TTTTA-TAAT
22839505 TTTATATAAT
1 TTT-TATAAT
22839515 TTTCTATAACT
1 TTT-TATAA-T
22839526 CTTTTATAAT
1 -TTTTATAAT
*
22839536 TATTTATGAT
1 T-TTTATAAT
*
22839546 CTTTTATGAT
1 -TTTTATAAT
22839556 TT
1 TT
22839558 CTAAAAAAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 19
0.74 0.04 0.21
Matches are distributed among these distances:
8 6 0.09
9 13 0.19
10 36 0.54
11 9 0.13
12 3 0.04
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:22854426 original size:43 final size:42
Alignment explanation
Indices: 22854368--22854530 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 42
22854358 CAATGCCAAC
* * *
22854368 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCA-T
* *
22854411 GTCCCAGACAAGGTCTTACATGAAATCAAATA-CGATGTCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATG-CCAT
* * *
22854453 GTCCAAGACATGATCTTACATGTAAATCTCAA-ATCGATGCCAAT
1 GTCCCAGACATGGTCTTACATG-AAATC-AAATATCGATGCC-AT
* * *
22854497 GTCCCAGACGTGGTCTTACACGAAATCACATATC
1 GTCCCAGACATGGTCTTACATGAAATCAAATATC
22854531 AAAATCCTAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
42 26 0.27
43 45 0.46
44 27 0.28
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCAT
Found at i:22856300 original size:11 final size:10
Alignment explanation
Indices: 22856272--22856296 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22856262 TTTATAATAA
22856272 ATTTTGATTT
1 ATTTTGATTT
22856282 ATTTTGATTT
1 ATTTTGATTT
22856292 ATTTT
1 ATTTT
22856297 TGATAGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:22889604 original size:7 final size:7
Alignment explanation
Indices: 22889592--22889625 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
22889582 AAGACATTAG
22889592 TAAATGT
1 TAAATGT
22889599 TAAATGT
1 TAAATGT
22889606 TAAATGT
1 TAAATGT
*
22889613 TAAGTGT
1 TAAATGT
*
22889620 TCAATG
1 TAAATG
22889626 AATTTCTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (7 bp):
TAAATGT
Found at i:22890895 original size:15 final size:15
Alignment explanation
Indices: 22890875--22890904 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22890865 CCACGCATGA
22890875 TTAAAATAATTCATT
1 TTAAAATAATTCATT
*
22890890 TTAAAATATTTCATT
1 TTAAAATAATTCATT
22890905 AATAATTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAAATAATTCATT
Found at i:22924248 original size:15 final size:17
Alignment explanation
Indices: 22924218--22924249 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
22924208 TTGATACTTG
22924218 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
22924235 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
22924250 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:22927640 original size:2 final size:2
Alignment explanation
Indices: 22927633--22927657 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22927623 TCATTTGTTT
22927633 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22927658 CTTCTACCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22929368 original size:28 final size:28
Alignment explanation
Indices: 22929302--22929429 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
22929292 CATGAGATTG
* * **
22929302 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22929331 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
22929359 GCACTAAGTGTGTGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22929388 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22929416 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22929430 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22944556 original size:29 final size:28
Alignment explanation
Indices: 22944520--22944597 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
22944510 TCATGAGATT
22944520 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
22944550 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
22944577 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
22944598 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:22944860 original size:173 final size:174
Alignment explanation
Indices: 22944551--22944876 Score: 555
Period size: 173 Copynumber: 1.9 Consensus size: 174
22944541 AATTGTACAG
* * *
22944551 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
* *
22944616 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
22944681 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGA
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGA
* * * *
22944725 CACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATGC
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
*
22944790 GTGC-AACCCTATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
22944854 TTTGGACAGCGGAAAAGGTAAGT
131 TTTGGACAGCGGAAAAGGTAAGT
22944877 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
173 80 0.56
174 62 0.44
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGA
Found at i:22950250 original size:29 final size:29
Alignment explanation
Indices: 22950215--22950291 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
22950205 CATGAGATTG
* *
22950215 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGGGTTTAAAGTATACA
* **
22950244 GCACTAAGTGTGCGAGTTTAAAGTATATG
1 GCACTAAGTGTGCGGGTTTAAAGTATACA
22950273 GCACTAAGTGTGCGCGGTT
1 GCACTAAGTGTGCG-GGTT
22950292 GATTATTAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTTAAAGTATACA
Found at i:22950553 original size:173 final size:174
Alignment explanation
Indices: 22950245--22950570 Score: 546
Period size: 173 Copynumber: 1.9 Consensus size: 174
22950235 AATTGTACAG
* * * *
22950245 CACTAAGTGTGCGAGTTTAAAGTATATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
* *
22950310 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
22950375 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATGA
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATGA
* * * *
22950419 CACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATGC
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
*
22950484 GTGC-AACCCTATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
22950548 TTTGGACAGCGGAAAAGGTAAGT
131 TTTGGACAGCGGAAAAGGTAAGT
22950571 ACCTTGAGTT
Statistics
Matches: 141, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
173 80 0.57
174 61 0.43
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (174 bp):
CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATGA
Found at i:22962243 original size:28 final size:28
Alignment explanation
Indices: 22962202--22962265 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
22962192 TTCCTCGCTA
*
22962202 TGCAAAATTCTTAAAAGAATTGTACATT
1 TGCAAAATTATTAAAAGAATTGTACATT
*
22962230 TGCAAAATTATTAAAAGAATTGTGCATT
1 TGCAAAATTATTAAAAGAATTGTACATT
22962258 TGCAAAAT
1 TGCAAAAT
22962266 AAAGCTCTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (28 bp):
TGCAAAATTATTAAAAGAATTGTACATT
Found at i:22967183 original size:15 final size:16
Alignment explanation
Indices: 22967163--22967196 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
22967153 GTTTTAATTT
22967163 TATTAT-TTTAACATA
1 TATTATATTTAACATA
22967178 TATTATAATTTAACATA
1 TATTAT-ATTTAACATA
22967195 TA
1 TA
22967197 AAATACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
17 11 0.65
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTATATTTAACATA
Found at i:22968160 original size:29 final size:31
Alignment explanation
Indices: 22968115--22968172 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
22968105 ACAAACTTGA
*
22968115 AATTTAGTGCTTGTATTTTT-AT-TTTTAGG
1 AATTTAGTGCTTCTATTTTTCATATTTTAGG
22968144 AATTTAGT-CTCTCTATTTTTCATATTTTA
1 AATTTAGTGCT-TCTATTTTTCATATTTTA
22968173 AAATTTAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 2 0.08
29 16 0.64
30 2 0.08
31 5 0.20
ACGTcount: A:0.22, C:0.09, G:0.10, T:0.59
Consensus pattern (31 bp):
AATTTAGTGCTTCTATTTTTCATATTTTAGG
Found at i:22970294 original size:25 final size:23
Alignment explanation
Indices: 22970258--22970313 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
22970248 TTTACCCTAC
22970258 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
22970283 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
22970306 -TTTATTAT
1 TTTTATTAT
22970314 CTATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:22970583 original size:32 final size:27
Alignment explanation
Indices: 22970558--22970609 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
22970548 TATGTATATC
22970558 ATATATTA-TCTATTATATTATTTATGT
1 ATATATTATTC-ATTATATTATTTATGT
*
22970585 TTATATTATTCATTATATTATTTAT
1 ATATATTATTCATTATATTATTTAT
22970610 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (27 bp):
ATATATTATTCATTATATTATTTATGT
Found at i:22977503 original size:39 final size:40
Alignment explanation
Indices: 22977459--22977625 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
22977449 CCTTCGGAGT
*
22977459 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
22977498 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
22977538 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
22977577 TTAGCCCAGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
22977617 TTAGCCCGG
1 TTAGCCCGG
22977626 TTATCAATCC
Statistics
Matches: 115, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 39 0.34
40 75 0.65
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:22977602 original size:79 final size:80
Alignment explanation
Indices: 22977459--22977625 Score: 234
Period size: 79 Copynumber: 2.1 Consensus size: 80
22977449 CCTTCGGAGT
* ** *
22977459 TTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCAC
22977523 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
* *
22977538 TTAGCCCGGATATAG-TAACTTGCACAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTCACTAGC
1 TTAGCCCGGATATAGCT-ACTAGCACAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTAGC
22977600 ACAAATGCCTTCGGGAC
64 ACAAATGCCTTCGGGAC
22977617 TTAGCCCGG
1 TTAGCCCGG
22977626 TTATCAATCC
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
79 48 0.61
80 31 0.39
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:22978832 original size:51 final size:51
Alignment explanation
Indices: 22978754--22978881 Score: 220
Period size: 51 Copynumber: 2.5 Consensus size: 51
22978744 ATTTCCTCAA
* *
22978754 AGCTCTTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
22978805 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
22978856 AGCTTTTTTTTCCTTTCTTTTTCTTT
1 AGC-TTTTTTT-CTTTCTTTTTCTTT
22978882 TTTCATCATC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
51 52 0.71
52 7 0.10
53 14 0.19
ACGTcount: A:0.16, C:0.23, G:0.10, T:0.51
Consensus pattern (51 bp):
AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
Found at i:22985009 original size:20 final size:20
Alignment explanation
Indices: 22984984--22985032 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
22984974 AGATTTTTTT
*
22984984 TAAAAAAATAACAATAAT-AA
1 TAAAAAAATAA-AAAAATAAA
22985004 TAAAAAAATAAAAAAATAAAA
1 TAAAAAAATAAAAAAAT-AAA
22985025 TAAAAAAA
1 TAAAAAAA
22985033 ATAGAGAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 11 0.42
21 10 0.38
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (20 bp):
TAAAAAAATAAAAAAATAAA
Found at i:22986202 original size:210 final size:210
Alignment explanation
Indices: 22985890--22986693 Score: 1038
Period size: 210 Copynumber: 3.8 Consensus size: 210
22985880 TAAGCCGCAG
** *
22985890 CATAGCAGATCTCATATTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * * *
22985955 TGTATTCGGCGGGGAGCATATTAAAGATATAGCTGATTTGGCTTTCACGTGTTTACAATGAAGCA
66 TATATTCGGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
* * *
22986020 CATCTAAGATTATTTGTTGCCTTTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
131 AATCTAAGATGATTTGTTGCCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
22986085 AATGGAAGGCAGACA
196 AATGGAAGGCAGACA
*
22986100 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGATAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
*
22986165 TATATTCGGCAGGGAACAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
66 TATATTCGGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
*
22986230 AATCTAAGATGATTTGTTGCCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
131 AATCTAAGATGATTTGTTGCCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
22986295 AATGGAAGGCAGACA
196 AATGGAAGGCAGACA
*
22986310 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCTAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
*
22986375 TATATTCGGCAGGGAGTAGATCGAAA-ATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 TATATTCGGCAGGGAGCAGATC-AAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
* * * * * *
22986439 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTAGCATCTCTACTT
130 AAATCTAAGATGATTTGTTGCCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT
* * *
22986504 CAATAG-AGTGCAGATA
195 TAATGGAAG-GCAGACA
* * * * * **
22986520 CATAGCAGATCTGACCATCAGACGATTA-GACTGAAACAAGATCCAAGA-G---GAT-TTGGCAT
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTGAAGC-AGATCCAAGATGACAGATCTTATC-T
* * ** * * * * * * *
22986579 C-CT-TGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTAGCTTTCACGTGCTTATGATGA
63 CTCTATATTC-GGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGA
* * *
22986642 AGAAAATCTAAGGTGATTTG-T-CATACCTGTATTGTCAGAGAACAAATCGAAG
127 AGCAAATCTAAGATGATTTGTTGCCT--CTGTATTGTCAGAGAACAAATCGAAG
22986694 AAGCAAATTT
Statistics
Matches: 531, Mismatches: 54, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
204 1 0.00
205 5 0.01
206 89 0.17
207 5 0.01
209 3 0.01
210 416 0.78
211 12 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (210 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
TATATTCGGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
AATCTAAGATGATTTGTTGCCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
AATGGAAGGCAGACA
Found at i:22988319 original size:22 final size:22
Alignment explanation
Indices: 22988293--22988348 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
22988283 CCTACTTTTA
22988293 TATTATATATTGAAAAATTATT
1 TATTATATATTGAAAAATTATT
* *
22988315 TATTATATATAT-TAATATTATT
1 TATTATATAT-TGAAAAATTATT
*
22988337 TATTATCTATTG
1 TATTATATATTG
22988349 TTTTTCACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.93
23 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (22 bp):
TATTATATATTGAAAAATTATT
Found at i:22988488 original size:22 final size:23
Alignment explanation
Indices: 22988433--22988492 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 23
22988423 ATTAACTATT
*
22988433 TATATA-TATTGT-TTTTACATA
1 TATATACTATTATATTTTACATA
* *
22988454 TATATACTCTTATTATTTTATAT-
1 TATATACTATTA-TATTTTACATA
22988477 TATAT-CTATTATATTT
1 TATATACTATTATATTT
22988493 CTTATTTCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 11 0.34
22 8 0.25
23 6 0.19
24 7 0.22
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATACTATTATATTTTACATA
Found at i:22988607 original size:12 final size:12
Alignment explanation
Indices: 22988590--22988639 Score: 73
Period size: 12 Copynumber: 4.0 Consensus size: 12
22988580 ATGTATATCA
*
22988590 TATATTATCTAT
1 TATATTATTTAT
22988602 TATATTATTTATGT
1 TATATTATTTA--T
22988616 TATATTATTTAT
1 TATATTATTTAT
22988628 TATATTATTTAT
1 TATATTATTTAT
22988640 AATTTTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
12 23 0.66
14 12 0.34
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:22988620 original size:26 final size:26
Alignment explanation
Indices: 22988590--22988639 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22988580 ATGTATATCA
22988590 TATATTATCTATTATATTATTTATGT
1 TATATTATCTATTATATTATTTATGT
*
22988616 TATATTATTTATTATATTATTTAT
1 TATATTATCTATTATATTATTTAT
22988640 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
TATATTATCTATTATATTATTTATGT
Found at i:22994700 original size:48 final size:48
Alignment explanation
Indices: 22994629--22994725 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
22994619 ATCATATAAG
22994629 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
1 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
22994677 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
1 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
22994725 T
1 T
22994726 CGGGGGAAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.34
Consensus pattern (48 bp):
TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
Found at i:22995047 original size:43 final size:42
Alignment explanation
Indices: 22994986--22995124 Score: 147
Period size: 43 Copynumber: 3.3 Consensus size: 42
22994976 ACTTTTGAGG
* * *
22994986 TGTGATTTCATGCAAGACCATGTCTAGGACATTGGCATCGATA
1 TGTGATTACATGTAAGACCATGTCTAGGATA-TGGCATCGATA
* * * * *
22995029 TGAGATTACATGTAAGACCCTGTCTGGGATAGAGGCATCAATA
1 TGTGATTACATGTAAGACCATGTCTAGGATA-TGGCATCGATA
* * *
22995072 TGTGATAACATGTAAGACCATATCTAGGATATGGCATTG-TA
1 TGTGATTACATGTAAGACCATGTCTAGGATATGGCATCGATA
22995113 TGTGA-TACATGT
1 TGTGATTACATGT
22995125 GTTTCTGAGT
Statistics
Matches: 78, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
40 6 0.08
41 7 0.09
42 5 0.06
43 60 0.77
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTAGGATATGGCATCGATA
Found at i:23002237 original size:25 final size:25
Alignment explanation
Indices: 23002203--23002259 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
23002193 TATGTCTAGG
*
23002203 CCAACCAGCTTCTTCTTACTAAGCT
1 CCAACCAGCTTCTTCTCACTAAGCT
*
23002228 CCAACCAGCTTCTTCTCACTATGCT
1 CCAACCAGCTTCTTCTCACTAAGCT
23002253 CCAACCA
1 CCAACCA
23002260 ACAAACAGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.40, G:0.07, T:0.28
Consensus pattern (25 bp):
CCAACCAGCTTCTTCTCACTAAGCT
Found at i:23018100 original size:577 final size:576
Alignment explanation
Indices: 23017007--23018133 Score: 2092
Period size: 577 Copynumber: 2.0 Consensus size: 576
23016997 ACTATGCGAC
* *
23017007 AATGTATATTAAATTCGTTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTG
1 AATGTATATTAAATTCATTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTC
* * *
23017072 GTAAATGTTTATATCTAATGTTAAAGCATTGGATGAATGGACTTAGTAGTTAACTCACCTGAAGG
66 GCAAATGTTTATATCTAATGGTAAAGCATTGGATGAATGAACTTAGTAGTTAACTCACCTGAAGG
* *
23017137 TATATGTATAGTAGATGGATTATATGTAAGAGTAATTCCATTTTTAGGCAAATTTAGATGACCGA
131 TATATGTATAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAATTTAGATGACCGA
*
23017202 GTGGGTGATAAATAGATTTGTGGTAACTGAAATTTTGGCATGTGAAATGTGTATATTTTAAATCT
196 GTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATCT
23017267 TTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAAG
261 TTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAAG
23017332 TTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAACA
326 TTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAACA
23017397 TTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTGAATAA
391 TTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTGAATAA
* *
23017462 TAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTTGTAATATATCTTAAAAT
456 TAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTCGTAATACATCTTAAAAT
*
23017527 GCTTGATGTCTGTTAGATATCCAAATTTTATACATATTCGAAATATACTGTGCAAT
521 GCTTGATGTATGTTAGATATCCAAATTTTATACATATTCGAAATATACTGTGCAAT
*
23017583 AATGTATATTAAATTCATTGGTAAGATAAAGATATGAAAGTTGATGGTGACTAAATTATGATTTC
1 AATGTATATTAAATTCATTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTC
*
23017648 GCAAATGTTTATATCTAATGGTAATGCATTGGATGAATGAACTTAGTAGTTAACTCACCTGAAGG
66 GCAAATGTTTATATCTAATGGTAAAGCATTGGATGAATGAACTTAGTAGTTAACTCACCTGAAGG
*
23017713 TATATGTGTAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAAGTTTAGATGACCG
131 TATATGTATAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAA-TTTAGATGACCG
*
23017778 AGTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCTTGTGAAATGTGTATATTTTAAATC
195 AGTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATC
*
23017843 TTTACTCGTGAGTTAAATGTTTAATCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAA
260 TTTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAA
*
23017908 GTTTAGTAAATTTATTATTGACGGTCTGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAAC
325 GTTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAAC
23017973 ATTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTGAATA
390 ATTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTGAATA
23018038 ATAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTCGTAATACATCTTAAAA
455 ATAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTCGTAATACATCTTAAAA
23018103 TGCTTGATGTATGTTAGATATCCAAATTTTA
520 TGCTTGATGTATGTTAGATATCCAAATTTTA
23018134 ATTCGTATTT
Statistics
Matches: 533, Mismatches: 17, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
576 172 0.32
577 361 0.68
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (576 bp):
AATGTATATTAAATTCATTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTC
GCAAATGTTTATATCTAATGGTAAAGCATTGGATGAATGAACTTAGTAGTTAACTCACCTGAAGG
TATATGTATAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAATTTAGATGACCGA
GTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATCT
TTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAAG
TTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAACA
TTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTGAATAA
TAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTCGTAATACATCTTAAAAT
GCTTGATGTATGTTAGATATCCAAATTTTATACATATTCGAAATATACTGTGCAAT
Found at i:23027984 original size:25 final size:25
Alignment explanation
Indices: 23027956--23028025 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
23027946 CTCTTTTAAT
*
23027956 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
23027981 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
23028006 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23028026 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:23031278 original size:26 final size:26
Alignment explanation
Indices: 23031249--23031303 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
23031239 TCTAGCACAT
* *
23031249 ATACTGATACTAGCAGCTTTGCTGCA
1 ATACTGATACCAGCAGCCTTGCTGCA
* * *
23031275 ATACTGTTACCGGTAGCCTTGCTGCA
1 ATACTGATACCAGCAGCCTTGCTGCA
23031301 ATA
1 ATA
23031304 TTGGTGTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACTGATACCAGCAGCCTTGCTGCA
Found at i:23033483 original size:50 final size:50
Alignment explanation
Indices: 23033410--23033645 Score: 242
Period size: 50 Copynumber: 4.7 Consensus size: 50
23033400 TAAGATGGTT
* * *
23033410 TTAGGTCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
** * * * *
23033460 TTAGATTGCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGACA-AC
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AAATAG
* * * * *
23033511 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
* * * *
23033561 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
* ** *
23033611 TT-GGTTGCATGTGTAGTACTAAGTGTAGGCTACTA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTA
23033646 TGCATACCAG
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
49 31 0.20
50 82 0.53
51 39 0.25
52 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
Found at i:23033545 original size:101 final size:101
Alignment explanation
Indices: 23033415--23033604 Score: 290
Period size: 101 Copynumber: 1.9 Consensus size: 101
23033405 TGGTTTTAGG
**
23033415 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTAC
1 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATCACATGTGTAGTAC
* *
23033480 TAAGTGTAGGCTACTATGTGTACCCGACAACTTCGA
66 TAAGTGCAGGCTACTACGTGTACCCGACAACTTCGA
* * * * * *
23033516 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATCACATGTGTAGTAC
23033581 TAAGTGCAGGCTACTACGTGTACC
66 TAAGTGCAGGCTACTACGTGTACC
23033605 GAATTGTTGG
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCCGACAACTTCGA
Found at i:23033549 original size:28 final size:28
Alignment explanation
Indices: 23033518--23033601 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
23033508 AACTTCGATC
23033518 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
23033546 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
23033568 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
23033596 ACGTGT
1 ACGTGT
23033602 ACCGAATTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:23033688 original size:150 final size:152
Alignment explanation
Indices: 23033371--23033691 Score: 421
Period size: 150 Copynumber: 2.1 Consensus size: 152
23033361 GAGAACACGT
* * * *
23033371 GTAGTACTATGTGCGGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAATACTAAGTG
1 GTAGTAATATGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTGTAATACTAAGTG
**
23033436 CAGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGTAGGCTACTATGTGT
65 CAGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGTAGGCTACTATGCAT
* ** *
23033501 ACCCGACAACTTCGATCACGTGT
130 ACCAGACAACTTCGATCACAAGG
* * * *
23033524 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAGTGC
1 GTAGTAATATGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAATACTAAGTGC
* * *
23033588 AGGCTACTACGTGTACCGAATTGTT-GGTTGCATGTGTAGTACTAAGTGTAGGCTACTATGCATA
66 AGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGTAGGCTACTATGCATA
* * * *
23033652 CCAGATAGCTTCGGTTACAAGG
131 CCAGACAACTTCGATCACAAGG
*
23033674 GTGGTAATATGTGCAGGC
1 GTAGTAATATGTGCAGGC
23033692 AACCGTGTAT
Statistics
Matches: 146, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
150 65 0.45
151 49 0.34
153 32 0.22
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (152 bp):
GTAGTAATATGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAATACTAAGTGC
AGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGTAGGCTACTATGCATA
CCAGACAACTTCGATCACAAGG
Found at i:23037405 original size:21 final size:21
Alignment explanation
Indices: 23037381--23037426 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
23037371 AATTAACTAT
23037381 CGAAACGTTAAAATTTTTCAA
1 CGAAACGTTAAAATTTTTCAA
* *
23037402 CGAACCTTTAAAATTTTTCAA
1 CGAAACGTTAAAATTTTTCAA
23037423 CGAA
1 CGAA
23037427 CCTTTAATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (21 bp):
CGAAACGTTAAAATTTTTCAA
Found at i:23037427 original size:21 final size:21
Alignment explanation
Indices: 23037388--23037433 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
23037378 TATCGAAACG
23037388 TTAAAATTTTTCAACGAACCT
1 TTAAAATTTTTCAACGAACCT
23037409 TTAAAATTTTTCAACGAACCT
1 TTAAAATTTTTCAACGAACCT
23037430 TTAA
1 TTAA
23037434 TACCATCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.39
Consensus pattern (21 bp):
TTAAAATTTTTCAACGAACCT
Found at i:23039076 original size:42 final size:42
Alignment explanation
Indices: 23039029--23039173 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 42
23039019 TACCACACCA
* * *
23039029 ATGCCATATCCTAGATACGGTCTTATAT-AGGATCT-AGTTTCG
1 ATGCCATATCCTAGATATGGTCTTATATGA-AATCTCA-TATCG
* * * *
23039071 ATGCCAATAGCCTAGCTATAGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTATATGAAATCTCATATCG
* **
23039114 ATGCCATATCCCAGATATGGTCTTATACAAAATCTCATAAT-G
1 ATGCCATATCCTAGATATGGTCTTATATGAAATCTCAT-ATCG
*
23039156 ATGTCATATCCTAGATAT
1 ATGCCATATCCTAGATAT
23039174 TGTCATACAG
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 48 0.58
43 33 0.40
44 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTATATGAAATCTCATATCG
Found at i:23043330 original size:28 final size:28
Alignment explanation
Indices: 23043265--23043443 Score: 270
Period size: 28 Copynumber: 6.4 Consensus size: 28
23043255 GAGATTGGCG
* * * *
23043265 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
23043294 CTAAGTGTGCGAGTTTGATTATCTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
23043322 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
23043350 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
23043378 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
23043406 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
23043433 CTGAGTGTGCG
1 CTAAGTGTGCG
23043444 GACTTAATAT
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
27 24 0.17
28 103 0.73
29 15 0.11
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:23051295 original size:42 final size:42
Alignment explanation
Indices: 23051184--23051333 Score: 162
Period size: 42 Copynumber: 3.5 Consensus size: 42
23051174 ACACCAATGT
* * * * *
23051184 CATATCCTAGATATGGTCTTATAT-AGGATCTCGTTTCGATGC
1 CATATCCCAGATATGGTCTTACATGAAG-TCTCATATCGATGC
* *
23051226 CAATAGCCCA-ACTATGGTCTTAAATGAAGTCTCATATCGATGC
1 C-ATATCCCAGA-TATGGTCTTACATGAAGTCTCATATCGATGC
* *
23051269 CATATCCCAGATATGGTCTTACATGAAATCTCATAAT-GATGT
1 CATATCCCAGATATGGTCTTACATGAAGTCTCAT-ATCGATGC
23051311 CATATCCCAGATATGGTCTTACA
1 CATATCCCAGATATGGTCTTACA
23051334 CATAGTCTTG
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
42 57 0.61
43 34 0.37
44 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGC
Found at i:23052650 original size:18 final size:18
Alignment explanation
Indices: 23052627--23052661 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
23052617 TTATCAGTAC
23052627 CATTAGAGAA-TTCTTTAT
1 CATTAGA-AATTTCTTTAT
23052645 CATTAGAAATTTCTTTA
1 CATTAGAAATTTCTTTA
23052662 CCAACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (18 bp):
CATTAGAAATTTCTTTAT
Found at i:23054068 original size:3 final size:3
Alignment explanation
Indices: 23054060--23054104 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
23054050 CGGTTGGCTT
23054060 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23054105 AAAAAGAGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23059099 original size:23 final size:21
Alignment explanation
Indices: 23059047--23059100 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
23059037 ACACTTTTTA
* *
23059047 TAAAATCCTGAAACTAAGTTT
1 TAAAATCCTAAAACTAAATTT
*
23059068 T-AGATCCTAAAACTGAAAATTT
1 TAAAATCCTAAAACT--AAATTT
23059090 TAAAATCCTAA
1 TAAAATCCTAA
23059101 CCTTTTCTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 11 0.42
21 1 0.04
22 6 0.23
23 8 0.31
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.31
Consensus pattern (21 bp):
TAAAATCCTAAAACTAAATTT
Found at i:23063598 original size:66 final size:66
Alignment explanation
Indices: 23063528--23063663 Score: 263
Period size: 66 Copynumber: 2.1 Consensus size: 66
23063518 TAAAAGACAC
*
23063528 TTTTATTATACTGTCATTTAGATGGAATTTAGTTTTTGTTTCTTTATGGACAAATTTGGATATTA
1 TTTTATTATACTATCATTTAGATGGAATTTAGTTTTTGTTTCTTTATGGACAAATTTGGATATTA
23063593 T
66 T
23063594 TTTTATTATACTATCATTTAGATGGAATTTAGTTTTTGTTTCTTTATGGACAAATTTGGATATTA
1 TTTTATTATACTATCATTTAGATGGAATTTAGTTTTTGTTTCTTTATGGACAAATTTGGATATTA
23063659 T
66 T
23063660 TTTT
1 TTTT
23063664 CATTCGGAAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (66 bp):
TTTTATTATACTATCATTTAGATGGAATTTAGTTTTTGTTTCTTTATGGACAAATTTGGATATTA
T
Found at i:23068225 original size:24 final size:24
Alignment explanation
Indices: 23068198--23068243 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
23068188 CTAATTTTAA
*
23068198 ATTAGAACTTAAACACTAAAAAAT
1 ATTAGAACTCAAACACTAAAAAAT
* *
23068222 ATTAGGACTCAAACATTAAAAA
1 ATTAGAACTCAAACACTAAAAA
23068244 GTGATTCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.24
Consensus pattern (24 bp):
ATTAGAACTCAAACACTAAAAAAT
Found at i:23072380 original size:26 final size:27
Alignment explanation
Indices: 23072323--23072414 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
23072313 AATGAACTAT
* * *
23072323 CTTTGTGGCATAAACGTAAAGGAACGT
1 CTTTGTGGCATAATCGTAAAGGAATGC
*
23072350 ATTTGTGGCATAATCGT-AAGGAATGC
1 CTTTGTGGCATAATCGTAAAGGAATGC
*
23072376 CTTTGTGGCATAATTGTAAAGGAATGC
1 CTTTGTGGCATAATCGTAAAGGAATGC
23072403 CTTTGTGGCATA
1 CTTTGTGGCATA
23072415 TTATGAATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 22 0.38
27 36 0.62
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (27 bp):
CTTTGTGGCATAATCGTAAAGGAATGC
Found at i:23072430 original size:27 final size:26
Alignment explanation
Indices: 23072367--23072447 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
23072357 GCATAATCGT
*
23072367 AAGGAATGCCTTTGTGGCATAATTGTA
1 AAGGAATGCCTTTGTGGCAT-ATTATA
*
23072394 AAGGAATGCCTTTGTGGCATATTATG
1 AAGGAATGCCTTTGTGGCATATTATA
* * *
23072420 AATGAACTGCCTTCGTGGCATATCATA
1 AAGGAA-TGCCTTTGTGGCATATTATA
23072447 A
1 A
23072448 CAATAACCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 9 0.19
27 38 0.81
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
AAGGAATGCCTTTGTGGCATATTATA
Found at i:23077394 original size:21 final size:22
Alignment explanation
Indices: 23077355--23077398 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
23077345 ATAAATTTTG
* *
23077355 ATTTTTAATAATTTAAATAAAT
1 ATTTTTAAAAAATTAAATAAAT
23077377 ATTTTTAAAAAATT-AATAAAT
1 ATTTTTAAAAAATTAAATAAAT
23077398 A
1 A
23077399 AAATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTTTTAAAAAATTAAATAAAT
Found at i:23083495 original size:33 final size:32
Alignment explanation
Indices: 23083457--23083570 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 32
23083447 GGTGTACATT
**
23083457 CCTTTTCAAGTGATACACACAAAGTATACCTTT
1 CCTTTTCAAGTG-TACACACAAAGTATACCTAA
*
23083490 CCTTTTCACA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGT-GTACACACAAAGTATACCTAA
* * *
23083523 CCTTTCCAAGTGTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGTACACACAAAGTATACCTAA
23083555 CCTTTTCAAGTTGTAC
1 CCTTTTCAAG-TGTAC
23083571 CACTTGGGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
32 28 0.41
33 39 0.57
34 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTATACCTAA
Found at i:23088682 original size:18 final size:17
Alignment explanation
Indices: 23088658--23088718 Score: 72
Period size: 18 Copynumber: 3.6 Consensus size: 17
23088648 TTCAGGAAAT
23088658 TTTATAATTTTTTATTA
1 TTTATAATTTTTTATTA
*
23088675 TTTCATAATTTTTTAATA
1 TTT-ATAATTTTTTATTA
*
23088693 TGTT-TAAATTTTTATT-
1 T-TTATAATTTTTTATTA
23088709 TTTATAATTT
1 TTTATAATTT
23088719 GTATGAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 2 0.05
16 6 0.16
17 13 0.35
18 14 0.38
19 2 0.05
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATAATTTTTTATTA
Found at i:23088727 original size:25 final size:24
Alignment explanation
Indices: 23088682--23088729 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
23088672 TTATTTCATA
*
23088682 ATTTTTTAATATGTTTAAATTTTT
1 ATTTTTTAATATGTATAAATTTTT
* *
23088706 ATTTTTATAATTTGTATGAATTTT
1 ATTTTT-TAATATGTATAAATTTT
23088730 CAGATTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
ATTTTTTAATATGTATAAATTTTT
Found at i:23107531 original size:39 final size:39
Alignment explanation
Indices: 23107487--23107579 Score: 141
Period size: 39 Copynumber: 2.4 Consensus size: 39
23107477 CATATTCACT
* *
23107487 TTTAAGCATATATCATAATACTCATATAATCACATAATA
1 TTTAAGCATATATCATAATACTCAAATAATCACATAACA
* *
23107526 TTTAAGCATATATCGTAATTCTCAAATAATCACATAACA
1 TTTAAGCATATATCATAATACTCAAATAATCACATAACA
*
23107565 TTCAAGCATATATCA
1 TTTAAGCATATATCA
23107580 CAATCCTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.34
Consensus pattern (39 bp):
TTTAAGCATATATCATAATACTCAAATAATCACATAACA
Found at i:23109580 original size:78 final size:78
Alignment explanation
Indices: 23109474--23109658 Score: 208
Period size: 78 Copynumber: 2.4 Consensus size: 78
23109464 TTTTACTTTT
* * * ** * * *
23109474 AAGCATATATTACATTACACATTTAATCACATAACATTTAAGCATATATCATAGCACTCACATAA
1 AAGCATATATCACAATACTCAAATAATCACATAAAATTTAAGCATATATCACAACACTCACATAA
* *
23109539 TCACATAACATTC
66 CCACAGAACATTC
* * * * * *
23109552 AAGTATATATCACAATACTTATATAATCACATAAAATTTAAGCATGTATCACAATACTCATATAA
1 AAGCATATATCACAATACTCAAATAATCACATAAAATTTAAGCATATATCACAACACTCACATAA
*
23109617 CCATAGAACATTC
66 CCACAGAACATTC
*
23109630 TAGCATATATCACAATACTCAAATAATCA
1 AAGCATATATCACAATACTCAAATAATCA
23109659 TGTAACACCC
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
78 88 1.00
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.30
Consensus pattern (78 bp):
AAGCATATATCACAATACTCAAATAATCACATAAAATTTAAGCATATATCACAACACTCACATAA
CCACAGAACATTC
Found at i:23109648 original size:39 final size:40
Alignment explanation
Indices: 23109475--23109658 Score: 175
Period size: 39 Copynumber: 4.7 Consensus size: 40
23109465 TTTACTTTTA
* * * *
23109475 AGCATATATTACATTACACATTTAATCACAT-AACATT-T
1 AGCATATATCACAATACTCATATAATCACATAAACATTCT
* ** * *
23109513 AAGCATATATCATAGCACTCACATAATCACAT-AACATTCA
1 -AGCATATATCACAATACTCATATAATCACATAAACATTCT
* *
23109553 AGTATATATCACAATACTTATATAATCACATAAA-ATT-T
1 AGCATATATCACAATACTCATATAATCACATAAACATTCT
*
23109591 AAGCATGTATCACAATACTCATATAA-C-CATAGAACATTCT
1 -AGCATATATCACAATACTCATATAATCACATA-AACATTCT
*
23109631 AGCATATATCACAATACTCAAATAATCA
1 AGCATATATCACAATACTCATATAATCA
23109659 TGTAACACCC
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
37 4 0.03
38 3 0.03
39 106 0.91
40 4 0.03
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.30
Consensus pattern (40 bp):
AGCATATATCACAATACTCATATAATCACATAAACATTCT
Found at i:23111354 original size:27 final size:26
Alignment explanation
Indices: 23111317--23111377 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
23111307 GAAGCTTCGG
*
23111317 AGAGCCATTAATT-AGGAAGCTCATGAA
1 AGAGCCATTAATTGA-GAAGCTCA-CAA
*
23111344 AGAGCCTTTAATTGAGAAGCTCACAA
1 AGAGCCATTAATTGAGAAGCTCACAA
23111370 AGAGCCAT
1 AGAGCCAT
23111378 ATAACGGGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 9 0.30
27 20 0.67
28 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (26 bp):
AGAGCCATTAATTGAGAAGCTCACAA
Found at i:23111443 original size:24 final size:25
Alignment explanation
Indices: 23111422--23111469 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
23111412 GGATGCTCTG
* *
23111422 AAGAGCTAT-TAACGTGAAGCTCGC
1 AAGAACTATGTAACGGGAAGCTCGC
23111446 AAGAACTATGTAACGGGAAGCTCG
1 AAGAACTATGTAACGGGAAGCTCG
23111470 AGAGGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (25 bp):
AAGAACTATGTAACGGGAAGCTCGC
Found at i:23115580 original size:46 final size:48
Alignment explanation
Indices: 23115461--23115629 Score: 200
Period size: 48 Copynumber: 3.6 Consensus size: 48
23115451 TGATATGTGT
* * *
23115461 GCTAGTGTAAGGCATGTCTGGGACATGCATAGGCC-TCGAGATATACCA
1 GCTAGTGTAAGACATGTCTGGGACATGCAT-CGCCTTCGAGATATACAA
* * * ** *
23115509 GCCAGTGGAAGACATGTCTGGGACATGCATCGCCTTTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCTTCGAGATATACAA
* *
23115555 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCTTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCTTCGAGATATACAA
*
23115603 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
23115630 ACGTCAGCTT
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 37 0.37
47 5 0.05
48 59 0.58
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCTTCGAGATATACAA
Found at i:23118284 original size:23 final size:23
Alignment explanation
Indices: 23118257--23118302 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
23118247 TAAAACAAGG
* *
23118257 GAAAAATTAACAAAGTAAGCTAT
1 GAAAAATAAACAAAGTAACCTAT
23118280 GAAAAATAAACAAAGTAACCTAT
1 GAAAAATAAACAAAGTAACCTAT
23118303 AAAGCTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.59, C:0.11, G:0.11, T:0.20
Consensus pattern (23 bp):
GAAAAATAAACAAAGTAACCTAT
Found at i:23122539 original size:40 final size:40
Alignment explanation
Indices: 23122342--23122525 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
23122332 CGAATGATGT
* * * *
23122342 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
23122382 CCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAATTA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAA
*
23122423 -CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23122460 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23122501 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23122526 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 30 0.25
40 77 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:23122547 original size:79 final size:79
Alignment explanation
Indices: 23122397--23122558 Score: 204
Period size: 79 Copynumber: 2.1 Consensus size: 79
23122387 CTAAGATCCA
* **
23122397 AAGGCATTTGTGCGAGTTACTAATTACGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
*
23122462 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * *
23122476 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAATAA-CGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
*
23122539 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
23122555 AAGG
1 AAGG
23122559 TACGTGATTC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 24 0.33
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:23126505 original size:17 final size:17
Alignment explanation
Indices: 23126480--23126513 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23126470 GATAAAAATG
* *
23126480 TATTTCATATGTTTTGA
1 TATTGCATATATTTTGA
23126497 TATTGCATATATTTTGA
1 TATTGCATATATTTTGA
23126514 ATACGAGACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (17 bp):
TATTGCATATATTTTGA
Found at i:23137658 original size:29 final size:28
Alignment explanation
Indices: 23137604--23137658 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
23137594 CCTATTTAGT
* * *
23137604 AACAGTACAATCTGGGCCTTAGCCCTTA
1 AACAGTACAATATGGGCCTAAACCCTTA
23137632 AACAGTAGCAATATGGGCCTAAACCCT
1 AACAGTA-CAATATGGGCCTAAACCCT
23137659 AATTCAGTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (28 bp):
AACAGTACAATATGGGCCTAAACCCTTA
Done.