Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 76 of 373
Found at i:23431818 original size:20 final size:21
Alignment explanation
Indices: 23431780--23431818 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
23431770 AACAATGAAG
*
23431780 GAGTTCTGTGTTACCAAGGTA
1 GAGTTCTGTATTACCAAGGTA
*
23431801 GAGTT-TGTATTACGAAGG
1 GAGTTCTGTATTACCAAGG
23431819 ACTCTAACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (21 bp):
GAGTTCTGTATTACCAAGGTA
Found at i:23434762 original size:27 final size:26
Alignment explanation
Indices: 23434725--23434780 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
23434715 ATATATAGAC
*
23434725 CTGTTCTGGTGGCCTAGCCACAATAT
1 CTGTTCTGGTGACCTAGCCACAATAT
* * *
23434751 CTGTATCTGGTGACTTCGTCACAATAT
1 CTGT-TCTGGTGACCTAGCCACAATAT
23434778 CTG
1 CTG
23434781 GCAGCCTCGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGTTCTGGTGACCTAGCCACAATAT
Found at i:23437580 original size:17 final size:17
Alignment explanation
Indices: 23437539--23437587 Score: 84
Period size: 15 Copynumber: 3.0 Consensus size: 17
23437529 GTGAGATTGC
23437539 ATGGTGTGCCATTATCT
1 ATGGTGTGCCATTATCT
23437556 AT--TGTGCCATTATCT
1 ATGGTGTGCCATTATCT
23437571 ATGGTGTGCCATTATCT
1 ATGGTGTGCCATTATCT
23437588 TTGGGTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 15 0.50
17 15 0.50
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (17 bp):
ATGGTGTGCCATTATCT
Found at i:23439762 original size:43 final size:43
Alignment explanation
Indices: 23439615--23439771 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
23439605 TGTGTTATCG
*
23439615 TGTAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * * * ***
23439659 TGTAAGGCCACGTTTGGGACATTGGCATC-ATACTTGATTTTG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACA
* *
23439701 TGTAAAACC-CTATTTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCGATATTTGATTACA
23439744 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
23439772 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.30
43 35 0.40
44 26 0.30
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:23442944 original size:30 final size:30
Alignment explanation
Indices: 23442908--23442986 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
23442898 ACACCAGACC
23442908 AACCGTGTGTCACACACGGCCGTGTAACCT
1 AACCGTGTGTCACACACGGCCGTGTAACCT
23442938 AACCGTGTGTCACACACGGCCGTGTAACCT
1 AACCGTGTGTCACACACGGCCGTGTAACCT
23442968 AACCGTGTGTCACACACGG
1 AACCGTGTGTCACACACGG
23442987 TTGAGACACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.19
Consensus pattern (30 bp):
AACCGTGTGTCACACACGGCCGTGTAACCT
Found at i:23444665 original size:8 final size:8
Alignment explanation
Indices: 23444652--23444684 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
23444642 AATGACACAT
23444652 ATAACAAA
1 ATAACAAA
23444660 ATAACAAA
1 ATAACAAA
23444668 ATAACAAA
1 ATAACAAA
23444676 ATAACAAA
1 ATAACAAA
23444684 A
1 A
23444685 GCCTTATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAACAAA
Found at i:23447206 original size:52 final size:52
Alignment explanation
Indices: 23447145--23447248 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
23447135 ATATTAGAGA
** *
23447145 TAGAATTAGATGATGAATAAAATATGGAATTGAAGCTTAATGAATATATTTT
1 TAGAATTAGATGATGAATAAAATATCAAAATGAAGCTTAATGAATATATTTT
*
23447197 TAGAATTAGATGATGAATAAAATATCAAAATGAAGCTTAATGAATCTATTTT
1 TAGAATTAGATGATGAATAAAATATCAAAATGAAGCTTAATGAATATATTTT
23447249 CATGTGGAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.36
Consensus pattern (52 bp):
TAGAATTAGATGATGAATAAAATATCAAAATGAAGCTTAATGAATATATTTT
Found at i:23448140 original size:44 final size:44
Alignment explanation
Indices: 23448089--23448198 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
23448079 CTCAAGGAAC
*
23448089 ACCCGTCCAGGCTAGATCCTTTCTATATTTAAGATCAACGCATT
1 ACCCGTCCGGGCTAGATCCTTTCTATATTTAAGATCAACGCATT
23448133 ACCCGTCCGGGCTAGATCCTTTCTATATTTAAGATCAACGCATT
1 ACCCGTCCGGGCTAGATCCTTTCTATATTTAAGATCAACGCATT
*
23448177 ACCCGTCCGGGCTAAATCCTTT
1 ACCCGTCCGGGCTAGATCCTTT
23448199 TCTGCAGCAC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (44 bp):
ACCCGTCCGGGCTAGATCCTTTCTATATTTAAGATCAACGCATT
Found at i:23455942 original size:40 final size:40
Alignment explanation
Indices: 23455741--23455934 Score: 291
Period size: 40 Copynumber: 4.9 Consensus size: 40
23455731 ATTCAGATTG
*
23455741 ATAACCGGGCTAAG-CCAGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
23455780 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23455820 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23455860 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23455900 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
23455935 AAGCTATATC
Statistics
Matches: 139, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 12 0.09
40 127 0.91
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:23455942 original size:80 final size:80
Alignment explanation
Indices: 23455741--23455963 Score: 299
Period size: 80 Copynumber: 2.8 Consensus size: 80
23455731 ATTCAGATTG
* * *
23455741 ATAACCGGGCTAAG-CCAGAAGGCATTTGTGCGAGTTACTATATTCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
* *
23455805 TTTGTGCTAGTTACT
66 ATTGTGCGAGTTACT
* * *
23455820 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
23455885 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * **
23455900 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAAACCCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGT
23455963 A
65 A
23455964 CTTGGTTTGG
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 30 0.24
80 96 0.76
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
ATTGTGCGAGTTACT
Found at i:23459794 original size:40 final size:40
Alignment explanation
Indices: 23459711--23459973 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
23459701 TTGAATGCTG
* * * * * *
23459711 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
23459751 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23459791 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
23459831 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23459871 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23459911 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23459950 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23459974 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23482055 original size:39 final size:40
Alignment explanation
Indices: 23481912--23482093 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
23481902 AGCTCAAAGT
* *
23481912 CTGCGGAACTTTAACCCCGGATATA-A-TACCAGCACTAAGC
1 CTGCGGGA-TTTAA-CCCGGATATACATTACCAGCACGAAGC
*
23481952 CTGCAGGATTTAACCCGGATATACATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
*
23481992 CTGCGGGATTTGACCCGGATATACATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
* * *
23482032 TTGCGGGA-TTGACCCGGATATACATTACCAGCACAAAGC
1 CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
*
23482071 CTACGGGATTTAACCCGGATATA
1 CTGCGGGATTTAACCCGGATATA
23482094 TATAATATAT
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 10 0.08
39 42 0.33
40 77 0.60
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (40 bp):
CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
Found at i:23482062 original size:79 final size:78
Alignment explanation
Indices: 23481921--23482093 Score: 249
Period size: 79 Copynumber: 2.2 Consensus size: 78
23481911 TCTGCGGAAC
*
23481921 TTTAACCCCGGATATAATACCAGCACTAAGCCTGCAGGATTTAACCCGGATATACATTACCAGCA
1 TTTAA-CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATACATTACCAGCA
* *
23481986 CGAAGCCTGCGGGA
65 CAAAGCCTACGGGA
* * * *
23482000 TTTGACCCGGATATACATTACCAGCACGAAGCTTGCGGGA-TTGACCCGGATATACATTACCAGC
1 TTTAACCCGGATATA-A-TACCAGCACGAAGCCTGCAGGATTTAACCCGGATATACATTACCAGC
23482064 ACAAAGCCTACGGGA
64 ACAAAGCCTACGGGA
23482079 TTTAACCCGGATATA
1 TTTAACCCGGATATA
23482094 TATAATATAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 10 0.12
79 55 0.65
80 19 0.23
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
TTTAACCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATACATTACCAGCAC
AAAGCCTACGGGA
Found at i:23486750 original size:14 final size:15
Alignment explanation
Indices: 23486731--23486761 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23486721 TTATCAAAAA
23486731 ATTAAAAATAT-TAT
1 ATTAAAAATATGTAT
23486745 ATTAAAAATATGTAT
1 ATTAAAAATATGTAT
23486760 AT
1 AT
23486762 GCAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATTAAAAATATGTAT
Found at i:23488768 original size:17 final size:18
Alignment explanation
Indices: 23488748--23488781 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23488738 TTGAAAATAA
23488748 ATAAACAAATAA-AAATC
1 ATAAACAAATAACAAATC
*
23488765 ATAAATAAATAACAAAT
1 ATAAACAAATAACAAAT
23488782 AGAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (18 bp):
ATAAACAAATAACAAATC
Found at i:23488807 original size:21 final size:22
Alignment explanation
Indices: 23488742--23488801 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 22
23488732 AACAATTTGA
* *
23488742 AAATAAATAAACAAATAAAAATCAT
1 AAATAAA-GAACAAATAGAAAT--T
*
23488767 AAATAAATAACAAATAGAAATT
1 AAATAAAGAACAAATAGAAATT
23488789 AAA-AAAGAACAAA
1 AAATAAAGAACAAA
23488802 GTGAAAGATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 9 0.28
22 4 0.12
24 12 0.38
25 7 0.22
ACGTcount: A:0.73, C:0.07, G:0.03, T:0.17
Consensus pattern (22 bp):
AAATAAAGAACAAATAGAAATT
Found at i:23497803 original size:17 final size:17
Alignment explanation
Indices: 23497783--23497816 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
23497773 ATAAAAAAAC
23497783 AAATAA-AAATCATAAAT
1 AAATAATAAAT-ATAAAT
23497800 AAATAATAAATATAAAT
1 AAATAATAAATATAAAT
23497817 TAAAAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAATAAATATAAAT
Found at i:23508476 original size:42 final size:43
Alignment explanation
Indices: 23508430--23508519 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
23508420 CTAGAACATC
*** *
23508430 GGCATC-ATATTTGATTTTTTGTAAGACCCTATCTGGGACAGT
1 GGCATCGATATTTGATTACATGTAAGACCATATCTGGGACAGT
* *
23508472 GGCATCGATATTTGATTACATGTAAGACCATGTCTGGGACATT
1 GGCATCGATATTTGATTACATGTAAGACCATATCTGGGACAGT
23508515 GGCAT
1 GGCAT
23508520 TGTACGAGCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 6 0.15
43 35 0.85
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
GGCATCGATATTTGATTACATGTAAGACCATATCTGGGACAGT
Found at i:23513328 original size:55 final size:55
Alignment explanation
Indices: 23513234--23513374 Score: 156
Period size: 55 Copynumber: 2.6 Consensus size: 55
23513224 TGTGACATGG
* * * * * * *
23513234 CCGTGGGCGAACCTGCCAAAACAACACGAGCGTGCGACACGCCTGTGCATTGAAA
1 CCGTGGCCGAACCTGCCAAAACAACATGGGCATGTGACACGCCCGTGCATAGAAA
* ** * *
23513289 CCGTGGCCGAACCTGTCAAATTAACATGGGCATGTGACACGCCCGTGCCTAGCAA
1 CCGTGGCCGAACCTGCCAAAACAACATGGGCATGTGACACGCCCGTGCATAGAAA
* *
23513344 CCTTGGGCGAACCTGCCAAAACAACATGGGC
1 CCGTGGCCGAACCTGCCAAAACAACATGGGC
23513375 GTAGACCTTC
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.15
Consensus pattern (55 bp):
CCGTGGCCGAACCTGCCAAAACAACATGGGCATGTGACACGCCCGTGCATAGAAA
Found at i:23518906 original size:13 final size:13
Alignment explanation
Indices: 23518890--23518923 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
23518880 TATTTTTTGG
23518890 CATGATTTTGGCT
1 CATGATTTTGGCT
23518903 CATGATTTTGGCT
1 CATGATTTTGGCT
23518916 CATGATTT
1 CATGATTT
23518924 GATCTGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.15, G:0.21, T:0.47
Consensus pattern (13 bp):
CATGATTTTGGCT
Found at i:23532692 original size:41 final size:42
Alignment explanation
Indices: 23532608--23532711 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
23532598 ACGACCTACC
* * * * *
23532608 ACACGGCCTGGCATACAGGCGTGTGTGGCAACTTAGAGTGTT
1 ACACGGCCTGGCACACGGGCATGTGTGGCAACTCAGAGAGTT
*
23532650 ACACGGCCTGGCACACGGGCATGTG-GGCAACTCAGTGAGTT
1 ACACGGCCTGGCACACGGGCATGTGTGGCAACTCAGAGAGTT
* *
23532691 ACATGGGTCTGG-ACACGGGCA
1 ACA-CGGCCTGGCACACGGGCA
23532712 GGGACTGATC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 25 0.47
42 28 0.53
ACGTcount: A:0.22, C:0.24, G:0.35, T:0.19
Consensus pattern (42 bp):
ACACGGCCTGGCACACGGGCATGTGTGGCAACTCAGAGAGTT
Found at i:23539177 original size:43 final size:43
Alignment explanation
Indices: 23539116--23539202 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
23539106 TTCAACGGGT
*
23539116 AAGAAAAAGAAGTGTAATGGTAAGTATGCAAATGGAATGAATC
1 AAGAAAAAGAACTGTAATGGTAAGTATGCAAATGGAATGAATC
23539159 AAGAAAAAGAACTGTAATGGTAAGTATGCAAATGGAATGAATC
1 AAGAAAAAGAACTGTAATGGTAAGTATGCAAATGGAATGAATC
23539202 A
1 A
23539203 TTATCTTATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.49, C:0.06, G:0.24, T:0.21
Consensus pattern (43 bp):
AAGAAAAAGAACTGTAATGGTAAGTATGCAAATGGAATGAATC
Found at i:23541639 original size:61 final size:61
Alignment explanation
Indices: 23541544--23541660 Score: 216
Period size: 61 Copynumber: 1.9 Consensus size: 61
23541534 CCTACAACTA
23541544 AAAGACAAAAAGAAGAGGAACCTGCAGAAGAAGAAAAGACTAAATCAGTCAGTATTTAGTG
1 AAAGACAAAAAGAAGAGGAACCTGCAGAAGAAGAAAAGACTAAATCAGTCAGTATTTAGTG
* *
23541605 AAAGACAAGAAGCAGAGGAACCTGCAGAAGAAGAAAAGACTAAATCAGTCAGTATT
1 AAAGACAAAAAGAAGAGGAACCTGCAGAAGAAGAAAAGACTAAATCAGTCAGTATT
23541661 GAGACTAATA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.14
Consensus pattern (61 bp):
AAAGACAAAAAGAAGAGGAACCTGCAGAAGAAGAAAAGACTAAATCAGTCAGTATTTAGTG
Found at i:23543647 original size:49 final size:49
Alignment explanation
Indices: 23543566--23543693 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
23543556 TAAGATGCCA
* *
23543566 ATGCAATGTCTCAGACATGGTCTTACACTGGCTTTCATATAATGAG-G-CTG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGGCTTTCATATAATG-GTGTC-G
* * *
23543616 ATGCCATGTCCCAGACAGGTCTTACATTGGCTTTCATCTACTGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAATGGTGTCG
* *
23543665 ATGCCATGTCCTAGACAGGTCTTGCACTG
1 ATGCCATGTCCCAGACAGGTCTTACACTG
23543694 ACACACAACA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 51 0.75
50 16 0.24
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAATGGTGTCG
Found at i:23543787 original size:48 final size:47
Alignment explanation
Indices: 23543713--23543927 Score: 222
Period size: 46 Copynumber: 4.6 Consensus size: 47
23543703 AAGCTGACGC
* * *
23543713 CATGTCCCAGACAGGTCTTACTCTAGCTTGTCTATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCTCTATCTCGAGGCCGATG
* * **
23543761 CATGTCCCAAACATGTCTTACACTAGCTCTC-ATCTCAACACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCTATCTCGAGGCCGATG
* * * *
23543807 CATGTCCTAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT--CTATCTCGAGGCCGATG
* * *
23543855 CATGTCCCAGACATGTCTCACACTAGCTCTCATAT-T-GTGGCCGATT
1 CATGTCCCAGACATGTCTTACACTAGCTCTC-TATCTCGAGGCCGATG
* *
23543901 CATGTCTCGGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
23543928 ACACATATCT
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.50
47 4 0.03
48 63 0.46
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTATCTCGAGGCCGATG
Found at i:23543826 original size:94 final size:94
Alignment explanation
Indices: 23543713--23543887 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 94
23543703 AAGCTGACGC
* *** *
23543713 CATGTCCCAGACAGGTCTTACTCTAGCTTGTCTATCTCGAGGCCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACATGTC
*
23543778 TTACACTAGCTCTCATCTCAACACCGATG
66 TCACACTAGCTCTCATCTCAACACCGATG
* * * *
23543807 CATGTCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACATGTC
23543872 TCACACTAGCTCTCAT
66 TCACACTAGCTCTCAT
23543888 ATTGTGGCCG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 71 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACATGTC
TCACACTAGCTCTCATCTCAACACCGATG
Found at i:23543936 original size:94 final size:94
Alignment explanation
Indices: 23543745--23543938 Score: 237
Period size: 94 Copynumber: 2.1 Consensus size: 94
23543735 CTAGCTTGTC
* * *
23543745 TATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAACACCGATGCAT
1 TATCTCGAGGCCAATGCATGTCCCAAACATGTCTCACACTAGCTCTCATATCAACACCGATGCAT
* **
23543810 GTCCTAGACATGTCTTACACTGGCTTAAA
66 GTCCTAGACATGTCTTACACTAGCACAAA
* ***** *
23543839 TATCTCGAGGCCAATGCATGTCCCAGACATGTCTCACACTAGCTCTCATATTGTGGCCGATTCAT
1 TATCTCGAGGCCAATGCATGTCCCAAACATGTCTCACACTAGCTCTCATATCAACACCGATGCAT
* *
23543904 GT-CTCGGACATGTCTTACACTAGCACACA
66 GTCCT-AGACATGTCTTACACTAGCACAAA
23543933 TATCTC
1 TATCTC
23543939 CCAATATCTA
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
93 2 0.02
94 82 0.98
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (94 bp):
TATCTCGAGGCCAATGCATGTCCCAAACATGTCTCACACTAGCTCTCATATCAACACCGATGCAT
GTCCTAGACATGTCTTACACTAGCACAAA
Found at i:23545956 original size:13 final size:13
Alignment explanation
Indices: 23545938--23545964 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23545928 GAAGTAATCA
23545938 CACACGGGCGTGT
1 CACACGGGCGTGT
23545951 CACACGGGCGTGT
1 CACACGGGCGTGT
23545964 C
1 C
23545965 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:23551178 original size:48 final size:48
Alignment explanation
Indices: 23551098--23551276 Score: 200
Period size: 48 Copynumber: 3.8 Consensus size: 48
23551088 TCATATAGTG
* * * *
23551098 AGGCCGATGCCATGTCCCAGATAGGTCTTACACTAGCTTGTCTATCTCG
1 AGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
* * * *
23551147 AGGCCGGTGCATGTCTCAGACATGTCTTACACTAGC-TCTC-GTCTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
* * * * * **
23551193 ACGCCAATGCATGTCCTAGACATGTCTTACATTGGCTTAAATATCTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
23551241 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
23551277 ACACATATCT
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
46 33 0.31
47 4 0.04
48 60 0.57
49 8 0.08
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
Found at i:23555256 original size:22 final size:24
Alignment explanation
Indices: 23555230--23555283 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
23555220 CACGTTAGTG
23555230 AAAAATA-TATAAATAT-AAATAA
1 AAAAATATTATAAATATAAAATAA
*
23555252 AAAAATATTTATATATATAAAATAA
1 AAAAATA-TTATAAATATAAAATAA
23555277 AATAAAT
1 AA-AAAT
23555284 TGAATAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 7 0.26
24 8 0.30
25 8 0.30
26 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAAATATTATAAATATAAAATAA
Found at i:23555259 original size:20 final size:20
Alignment explanation
Indices: 23555230--23555283 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
23555220 CACGTTAGTG
*
23555230 AAAAATATATAAATATAAAT
1 AAAAAAATATAAATATAAAT
** *
23555250 AAAAAAATATTTATATATAT
1 AAAAAAATATAAATATAAAT
23555270 AAAATAAA-ATAAAT
1 AAAA-AAATATAAAT
23555284 TGAATAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 24 0.89
21 3 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAAAATATAAATATAAAT
Found at i:23555735 original size:20 final size:20
Alignment explanation
Indices: 23555710--23555747 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
23555700 TTAAATGAGC
23555710 AATTAAATCAATTTGATTAA
1 AATTAAATCAATTTGATTAA
*
23555730 AATTAAATTAATTTGATT
1 AATTAAATCAATTTGATT
23555748 GGAATCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
AATTAAATCAATTTGATTAA
Found at i:23555757 original size:20 final size:20
Alignment explanation
Indices: 23555714--23555757 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
23555704 ATGAGCAATT
*
23555714 AAATCAATTTGATTAAAATT
1 AAATCAATTTGATTAAAATC
* **
23555734 AAATTAATTTGATTGGAATC
1 AAATCAATTTGATTAAAATC
23555754 AAAT
1 AAAT
23555758 AAAATAAGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.39
Consensus pattern (20 bp):
AAATCAATTTGATTAAAATC
Found at i:23571835 original size:53 final size:53
Alignment explanation
Indices: 23571750--23571955 Score: 223
Period size: 53 Copynumber: 3.8 Consensus size: 53
23571740 ATTAGGGTTT
* * *
23571750 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * * * * *
23571803 AAGGATATCATGTAAGACCTTGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
23571858 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * *
23571911 AAGGATACCACGTAAGACCATGTCAAGAGATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
23571956 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
53 77 0.63
54 7 0.06
55 39 0.32
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:23579611 original size:40 final size:40
Alignment explanation
Indices: 23579556--23579638 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
23579546 ATCAACAAAG
* * *
23579556 GAGAAAGTTTCTTCACGTTGTGAAGTACTATTTCTGGGAA
1 GAGAAAGATTCTTCACGATGTGAAGTACTATTTCTAGGAA
23579596 GAGAAAGATTCTTCACGATGTGAAGTACTATTTCTAGGAA
1 GAGAAAGATTCTTCACGATGTGAAGTACTATTTCTAGGAA
23579636 GAG
1 GAG
23579639 CTATATTTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (40 bp):
GAGAAAGATTCTTCACGATGTGAAGTACTATTTCTAGGAA
Found at i:23582071 original size:25 final size:24
Alignment explanation
Indices: 23582024--23582081 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
23582014 TAGTTTTCTC
*
23582024 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
23582048 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
23582073 TTAATTTTT
1 TTAATTTTT
23582082 TTATTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 19 0.63
26 2 0.07
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.60
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:23582094 original size:11 final size:12
Alignment explanation
Indices: 23582070--23582095 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23582060 ATTCATTGAA
23582070 TTATTAATTTTT
1 TTATTAATTTTT
23582082 TTATTAATTTTT
1 TTATTAATTTTT
23582094 TT
1 TT
23582096 TGAGAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTAATTTTT
Found at i:23584669 original size:56 final size:57
Alignment explanation
Indices: 23584601--23584711 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 57
23584591 CACCTATATA
* * * * *
23584601 TGGCCCACTAGGCTC-AATCTCTTTCATATGGCCCATTAGGCCC-ATTCACATTTATG
1 TGGCCCACTAGGCCCAAATCACATTCATATGG-CCACTAGGCCCAAATCACATTTATG
*
23584657 TGGCCCATTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTA
1 TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTA
23584712 CAGTCATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 23 0.49
57 24 0.51
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTATG
Found at i:23584707 original size:28 final size:28
Alignment explanation
Indices: 23584598--23584709 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
23584588 ACACACCTAT
* * *
23584598 ATATGGCCCACTAGGCTCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACATTC
* * *
23584626 ATATGGCCCATTAGGCCCATTCACATTT
1 ATATGGCCCACTAGGCCCAATCACATTC
* *
23584654 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCACATTC
23584683 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCACTAGGCCC-AATCACATT
23584710 TACAGTCATG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 59 0.82
29 13 0.18
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTC
Found at i:23588829 original size:16 final size:16
Alignment explanation
Indices: 23588794--23588827 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
23588784 AAAACAAAAA
23588794 TTTGAGATTTCGGGAT
1 TTTGAGATTTCGGGAT
23588810 TTTGAG-TTTCGGGAT
1 TTTGAGATTTCGGGAT
23588825 TTT
1 TTT
23588828 TGGGGCGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.15, C:0.06, G:0.29, T:0.50
Consensus pattern (16 bp):
TTTGAGATTTCGGGAT
Found at i:23598077 original size:27 final size:27
Alignment explanation
Indices: 23598046--23598149 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 27
23598036 CAGCGACGGT
* *
23598046 AATATAATCGGCACACAGCCATGGGTA
1 AATATAATCGGCACAAAGCCATAGGTA
* * * * *
23598073 AATATGATCGACACAGAGTCATCA-ATA
1 AATATAATCGGCACAAAGCCAT-AGGTA
* * * *
23598100 AATATGATAGGCACATAGCCACAGGTA
1 AATATAATCGGCACAAAGCCATAGGTA
* *
23598127 AATACAATTGGCACAAAGCCATA
1 AATATAATCGGCACAAAGCCATA
23598150 ATCAAGACAG
Statistics
Matches: 58, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
AATATAATCGGCACAAAGCCATAGGTA
Found at i:23598628 original size:27 final size:27
Alignment explanation
Indices: 23598476--23598614 Score: 190
Period size: 27 Copynumber: 5.1 Consensus size: 27
23598466 CAAAACAGTC
* *
23598476 ATTTTAC-CTTACAGGGGTATTTCGGTA
1 ATTTTACAC-TACAAGGGTATTTCGATA
*
23598503 ATTTTACACTACAAGGGTATTTAGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* * *
23598530 ATTTTACACTACACGGATATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGATA
* *
23598557 ATTTTACACTATAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
23598584 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
23598611 ATTT
1 ATTT
23598615 AACAAACTAG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 96 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:23602601 original size:27 final size:27
Alignment explanation
Indices: 23602563--23602741 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
23602553 TAAATTGTAC
23602563 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *** *
23602590 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGACTATGT
** * *
23602616 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGGTTTGACTATGT
*
23602644 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
* * *
23602672 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *
23602699 AGCACTAAGTGTGCGCG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
*
23602726 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
23602742 GCTCAATATA
Statistics
Matches: 126, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.82
28 22 0.17
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGACTATGT
Found at i:23602677 original size:82 final size:81
Alignment explanation
Indices: 23602564--23602713 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
23602554 AAATTGTACA
* *
23602564 GCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23602628 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23602645 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
23602710 TGCG
65 TGCG
23602714 CGTTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 14 0.23
82 47 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23602731 original size:82 final size:81
Alignment explanation
Indices: 23602560--23602741 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
23602550 GATTAAATTG
* *
23602560 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23602625 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23602641 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
** **
23602705 AAGTGTGCGCGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23602723 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
23602742 GCTCAATATA
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23602751 original size:27 final size:27
Alignment explanation
Indices: 23602698--23602751 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
23602688 TTTGATTACG
* * *
23602698 TAGCACTAAGTGTGCGCGTTGATTATA
1 TAGCACTAAGTGTGCGCGCTCAATATA
* *
23602725 TAGCACTGAGTGTGCGGGCTCAATATA
1 TAGCACTAAGTGTGCGCGCTCAATATA
23602752 CATTCGTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGCGCTCAATATA
Found at i:23610817 original size:27 final size:27
Alignment explanation
Indices: 23610664--23610838 Score: 167
Period size: 27 Copynumber: 6.6 Consensus size: 27
23610654 TAAATTGTAC
*
23610664 AGCACTAAGTGTGC--GTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* ** *
23610689 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* ** *
23610715 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* *
23610743 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* *
23610770 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
23610797 AGCACTAAGTGTGTGCGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
23610824 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23610839 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
25 13 0.11
27 110 0.89
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:23610838 original size:81 final size:80
Alignment explanation
Indices: 23610661--23610809 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 80
23610651 GATTAAATTG
* *
23610661 TACAGCACTAAGTGTGC-GTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
23610725 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
23610740 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 TACAGCACTAAGTGTGCG-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
23610804 AGTGTG
64 AGTGTG
23610810 TGCGTTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 15 0.25
80 1 0.02
81 44 0.73
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:23622571 original size:8 final size:8
Alignment explanation
Indices: 23622558--23622601 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
23622548 GGCAAAAGAT
23622558 GAAATGCC
1 GAAATGCC
23622566 GAAATGCC
1 GAAATGCC
*
23622574 AAAATGCC
1 GAAATGCC
* **
23622582 GAAAAGTA
1 GAAATGCC
23622590 GAAATGCC
1 GAAATGCC
23622598 GAAA
1 GAAA
23622602 AGCCAAAAGT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (8 bp):
GAAATGCC
Found at i:23622580 original size:16 final size:16
Alignment explanation
Indices: 23622559--23622609 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
23622549 GCAAAAGATG
*
23622559 AAATGCCGAAATGCCA
1 AAATGCCGAAAAGCCA
*
23622575 AAATGCCGAAAAG-TA
1 AAATGCCGAAAAGCCA
23622590 GAAATGCCGAAAAGCCA
1 -AAATGCCGAAAAGCCA
23622607 AAA
1 AAA
23622610 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:23622593 original size:24 final size:23
Alignment explanation
Indices: 23622566--23622611 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
23622556 ATGAAATGCC
23622566 GAAATGCC-AAAATGCCGAAAAGTA
1 GAAATGCCGAAAA-GCC-AAAAGTA
23622590 GAAATGCCGAAAAGCCAAAAGT
1 GAAATGCCGAAAAGCCAAAAGT
23622612 TTGGCTACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.29
24 11 0.52
25 4 0.19
ACGTcount: A:0.50, C:0.17, G:0.22, T:0.11
Consensus pattern (23 bp):
GAAATGCCGAAAAGCCAAAAGTA
Found at i:23622900 original size:28 final size:28
Alignment explanation
Indices: 23622820--23622905 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
23622810 GTGAGCATGA
* * *
23622820 ATATGAATGTGACTGGGCCTAACGGTCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
23622848 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
23622877 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
23622905 A
1 A
23622906 AATTCAGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:23631136 original size:14 final size:14
Alignment explanation
Indices: 23631117--23631143 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23631107 GCCATTCTTG
23631117 CCGAAGGGAATATT
1 CCGAAGGGAATATT
23631131 CCGAAGGGAATAT
1 CCGAAGGGAATAT
23631144 CTAAAACCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.30, T:0.19
Consensus pattern (14 bp):
CCGAAGGGAATATT
Found at i:23659213 original size:39 final size:39
Alignment explanation
Indices: 23659159--23659238 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
23659149 TGAAAAGAGT
* * *
23659159 AGAAAGCTTGCAAATTGCTAATATTCATTTATGGATTTA
1 AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
23659198 AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
1 AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
23659237 AG
1 AG
23659239 CAGGTGTCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (39 bp):
AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
Found at i:23660772 original size:68 final size:67
Alignment explanation
Indices: 23660663--23660795 Score: 248
Period size: 68 Copynumber: 2.0 Consensus size: 67
23660653 CAATCGCAGT
*
23660663 AAGTAATAAAGTGACAAGTAAATGTCGAGTTATCATACCCACAGGGACTGTGAAAAGAATTATTT
1 AAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCAC-GGGACTGTGAAAAGAATTATTT
23660728 AGC
65 AGC
23660731 AAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCACGGGACTGTGAAAAGAATTATTTA
1 AAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCACGGGACTGTGAAAAGAATTATTTA
23660796 TGAATGCAAT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
67 23 0.36
68 41 0.64
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.26
Consensus pattern (67 bp):
AAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCACGGGACTGTGAAAAGAATTATTTA
GC
Found at i:23663661 original size:49 final size:49
Alignment explanation
Indices: 23663604--23663770 Score: 186
Period size: 49 Copynumber: 3.5 Consensus size: 49
23663594 CAAAGTCAAG
* * *
23663604 GCCATGTCCTAGACAGGTCTTACAGTGACTTTTATATATCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTATATATATCGAGGCCGAT
* * * *
23663653 GCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-AT--AAGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTATATATATCGAGGCCGAT
* *
23663697 GCCATGTCCCAGACAGGTCTTACACT-AGCTTGTATATCTCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGA-CTTATATATATCGAGGCCGAT
*
23663746 G-CATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
23663771 AGCACACATA
Statistics
Matches: 98, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 33 0.34
46 4 0.04
47 3 0.03
48 23 0.23
49 34 0.35
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTTATATATATCGAGGCCGAT
Found at i:23663717 original size:93 final size:94
Alignment explanation
Indices: 23663550--23663778 Score: 272
Period size: 93 Copynumber: 2.4 Consensus size: 94
23663540 GGAATAAGAT
* * *
23663550 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCAC-ATCAAAGTCAAGGCCATGTCCT
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGAC-A-CACAAT-AAAGTCAAGGCCATGTCCC
* *
23663614 AGACAGGTCTTACAGT-GACTTTTATATATCGAG
62 AGACAGGTCTTACACTAG-CTTGTATATATCGAG
* *
23663647 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAAT-AAG-CTGATGCCATGTCCCAGA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAATAAAGTC-AAGGCCATGTCCCAGA
*
23663710 CAGGTCTTACACTAGCTTGTATATCTCGAG
65 CAGGTCTTACACTAGCTTGTATATATCGAG
*
23663740 GCCGATG-CATGTCCCAGACATGTCTTACACT-AGCACACA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CACACA
23663779 TATCACCCAA
Statistics
Matches: 119, Mismatches: 9, Indels: 13
0.84 0.06 0.09
Matches are distributed among these distances:
91 1 0.01
92 30 0.25
93 48 0.40
94 4 0.03
95 3 0.03
96 13 0.11
97 20 0.17
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAATAAAGTCAAGGCCATGTCCCAGAC
AGGTCTTACACTAGCTTGTATATATCGAG
Found at i:23663782 original size:48 final size:49
Alignment explanation
Indices: 23663637--23663782 Score: 162
Period size: 44 Copynumber: 3.1 Consensus size: 49
23663627 AGTGACTTTT
*
23663637 ATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACT-GACACAC
1 ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CACAC
* * ****
23663686 A-A--T--AAGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGT
1 ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACAC
*
23663730 ATATCTCGAGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCACAC
1 ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACAC
23663778 ATATC
1 ATATC
23663783 ACCCAATGTC
Statistics
Matches: 78, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
44 34 0.44
45 2 0.03
46 1 0.01
47 1 0.01
48 32 0.41
49 8 0.10
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (49 bp):
ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACAC
Found at i:23671524 original size:46 final size:45
Alignment explanation
Indices: 23671474--23671646 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
23671464 TGGTTGAGCA
23671474 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
23671520 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAAG
* * * *
23671567 TCTGAACCCGTTGAGTTGAGTCCGATTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
23671613 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
23671647 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 60 0.59
47 29 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:23695167 original size:92 final size:93
Alignment explanation
Indices: 23695056--23695227 Score: 310
Period size: 92 Copynumber: 1.9 Consensus size: 93
23695046 CGCCCATAAG
* *
23695056 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23695121 ACGAGTT-GGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
23695148 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23695213 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
23695228 CAACATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 69 0.91
93 7 0.09
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:23695223 original size:46 final size:46
Alignment explanation
Indices: 23695049--23695223 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
23695039 TGTAACCCGC
* * *
23695049 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
23695095 CCATAAGTGAACTCGGACTCAACTCAACGAGTT-GGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
23695144 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
23695187 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23695224 TGCCCAACAT
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 85 0.79
47 5 0.05
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23702704 original size:93 final size:93
Alignment explanation
Indices: 23702592--23702764 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
23702582 CGCCCATAAG
* *
23702592 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23702657 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
23702685 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23702750 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
23702765 CAAATATCCT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:23702760 original size:46 final size:46
Alignment explanation
Indices: 23702585--23702760 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
23702575 TGTAACCCGC
* * *
23702585 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
23702631 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
23702681 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
23702724 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23702761 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23702779 original size:46 final size:46
Alignment explanation
Indices: 23702636--23702779 Score: 122
Period size: 46 Copynumber: 3.1 Consensus size: 46
23702626 CGCATCCATA
* *
23702636 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TTC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATATCCT
* * *
23702684 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC----ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATATCC-T
23702728 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
23702775 AGTGA
1 AGTGA
23702780 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
42 2 0.03
44 4 0.05
45 1 0.01
46 33 0.43
47 29 0.38
48 5 0.06
49 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
Found at i:23704135 original size:42 final size:43
Alignment explanation
Indices: 23704050--23704144 Score: 133
Period size: 42 Copynumber: 2.2 Consensus size: 43
23704040 GATATTACAG
*
23704050 GGTCTTACACAAATCACAATTACGATGCCGATGTCCCAGACAT
1 GGTCTTACACAAATCACAATTACGATGCCAATGTCCCAGACAT
*
23704093 GGTCTTACTCGAAATCAC-A-TATCGATG-CAATGTCCCAGACAT
1 GGTCTTACAC-AAATCACAATTA-CGATGCCAATGTCCCAGACAT
23704135 GGTCTTACAC
1 GGTCTTACAC
23704145 GAGAACAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
42 25 0.53
43 15 0.32
44 7 0.15
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
GGTCTTACACAAATCACAATTACGATGCCAATGTCCCAGACAT
Found at i:23707037 original size:8 final size:8
Alignment explanation
Indices: 23707024--23707055 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
23707014 TCATAAATGC
23707024 CGGCTTTT
1 CGGCTTTT
23707032 CGGCTTTT
1 CGGCTTTT
23707040 CGGCTTTT
1 CGGCTTTT
*
23707048 CGACTTTT
1 CGGCTTTT
23707056 ACCGATCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.03, C:0.25, G:0.22, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:23713499 original size:15 final size:16
Alignment explanation
Indices: 23713481--23713510 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23713471 TTATATATAC
23713481 CAAAACCA-AATTAAT
1 CAAAACCACAATTAAT
23713496 CAAAACCACAATTAA
1 CAAAACCACAATTAA
23713511 ACATAACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (16 bp):
CAAAACCACAATTAAT
Found at i:23713518 original size:16 final size:15
Alignment explanation
Indices: 23713481--23713519 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
23713471 TTATATATAC
*
23713481 CAAAACCAAATTAAT
1 CAAAACCAAATTAAA
23713496 CAAAACCACAATTAAA
1 CAAAACCA-AATTAAA
*
23713512 CATAACCA
1 CAAAACCA
23713520 TCAAGCGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (15 bp):
CAAAACCAAATTAAA
Found at i:23714786 original size:43 final size:43
Alignment explanation
Indices: 23714739--23714851 Score: 108
Period size: 43 Copynumber: 2.6 Consensus size: 43
23714729 TGCCAACGTT
* * *
23714739 CCAGACGTGGTCTTGCATGTAATCAC-ATGT-TGATGCC-ACTGTC
1 CCAGACGTGGTCTTACACG-AATCACAAT-TACGATGCCGA-TGTC
23714782 CCAGACAG-GGTCTTACACGAATCACAATTACGATGCCGATGTC
1 CCAGAC-GTGGTCTTACACGAATCACAATTACGATGCCGATGTC
* *
23714825 CCAGACATGGTCTTACTCGAAATCACA
1 CCAGACGTGGTCTTACACG-AATCACA
23714852 TATCGTTGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
42 7 0.12
43 43 0.73
44 9 0.15
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
CCAGACGTGGTCTTACACGAATCACAATTACGATGCCGATGTC
Found at i:23716718 original size:27 final size:27
Alignment explanation
Indices: 23716688--23716840 Score: 186
Period size: 27 Copynumber: 5.7 Consensus size: 27
23716678 TGAAATGCCT
*
23716688 TCGATTTGTAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* *
23716715 TCGATTTATAGAATTACCGTTTCACCC
1 TCGATTTATAGAATTACCATTTTACCC
*
23716742 TCGATTTACAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* *
23716769 TCGATTTAAAAAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* * *
23716796 TC-AGTTTACAAAATTACCGTTTTACCC
1 TCGA-TTTATAGAATTACCATTTTACCC
23716823 TCGATTGT-TA-AATTACCA
1 TCGATT-TATAGAATTACCA
23716841 AAATACCCCT
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
26 8 0.07
27 101 0.91
28 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TCGATTTATAGAATTACCATTTTACCC
Found at i:23716850 original size:27 final size:27
Alignment explanation
Indices: 23716827--23716981 Score: 195
Period size: 27 Copynumber: 5.7 Consensus size: 27
23716817 TTACCCTCGA
*
23716827 TTGTTAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
23716854 TTGTAAAATTAACAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
23716881 TTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
23716908 TTGTGAAATTACCAAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
23716935 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
**
23716962 TTAAAAAATTA-CATAAATAC
1 TTGTAAAATTACCA-AAATAC
23716982 ACTTGACTTT
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.02
27 109 0.98
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:23716980 original size:81 final size:81
Alignment explanation
Indices: 23716827--23716981 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 81
23716817 TTACCCTCGA
* * * **
23716827 TTGTTAAATTACCAAAATACCCCTAGTTTGTAAAATTAACAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACCAAAATACCCCTAATTTGTAAAATTAACAAAATACCCCTAATTTAAAAAATTA
*
23716892 CCGAAATACCACTGGT
66 CAGAAATACCACTGGT
* *
23716908 TTGTGAAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTAAAAAATTA
1 TTGTGAAATTACCAAAATACCCCTAATTTGTAAAATTAACAAAATACCCCTAATTTAAAAAATTA
*
23716973 CATAAATAC
66 CAGAAATAC
23716982 ACTTGACTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (81 bp):
TTGTGAAATTACCAAAATACCCCTAATTTGTAAAATTAACAAAATACCCCTAATTTAAAAAATTA
CAGAAATACCACTGGT
Found at i:23717034 original size:27 final size:26
Alignment explanation
Indices: 23716991--23717044 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
23716981 CACTTGACTT
23716991 TTTAAAAATTATAGAAATACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
23717017 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
23717044 T
1 T
23717045 CTGTAGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 4 0.16
27 20 0.80
28 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:23718173 original size:42 final size:42
Alignment explanation
Indices: 23718114--23718205 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
23718104 TAGTCTCCCA
23718114 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
23718156 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
23718198 AAATGGGC
1 AAATGGGC
23718206 CTAAGGGCCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:23718301 original size:31 final size:30
Alignment explanation
Indices: 23718227--23718306 Score: 124
Period size: 30 Copynumber: 2.6 Consensus size: 30
23718217 ACCATTTACA
*
23718227 GAAAAGTCTTCGGCCCAATGATATGATTTAT
1 GAAAAG-CTTCGGCCCAGTGATATGATTTAT
*
23718258 GAAATGCTTCGGCCCAGTGATATGATTTAT
1 GAAAAGCTTCGGCCCAGTGATATGATTTAT
23718288 GAAAAAGCTTCGGCCCAGT
1 G-AAAAGCTTCGGCCCAGT
23718307 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 24 0.53
31 21 0.47
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (30 bp):
GAAAAGCTTCGGCCCAGTGATATGATTTAT
Found at i:23720265 original size:42 final size:42
Alignment explanation
Indices: 23720205--23720296 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
23720195 TGGCCCATAG
* *
23720205 GCCCATTTTAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
23720247 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
23720289 GCCCATTT
1 GCCCATTT
23720297 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:23720471 original size:25 final size:25
Alignment explanation
Indices: 23720443--23720537 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
23720433 CTCCTTTAAT
* *
23720443 AACTGGGGCAAAGCGCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
23720468 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
23720493 AACTGGGGCAAAACCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
23720518 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23720538 AGCACTTCCT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:23721531 original size:27 final size:27
Alignment explanation
Indices: 23721500--23721557 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
23721490 CATAAGGGTA
23721500 TTACGGTCACTTTACCCTACAAGGGCT
1 TTACGGTCACTTTACCCTACAAGGGCT
*
23721527 TTACGGTCACTTTACCCTACAGGGGCT
1 TTACGGTCACTTTACCCTACAAGGGCT
23721554 TTAC
1 TTAC
23721558 AGTCTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTACAAGGGCT
Found at i:23721653 original size:27 final size:27
Alignment explanation
Indices: 23721623--23721674 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23721613 GTAAATCTAC
*
23721623 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAACGGTATTTCAATAATTTTGT
*
23721650 AAACCAACGGTATTTCTATAATTTT
1 AAACCAACGGTATTTCAATAATTTT
23721675 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (27 bp):
AAACCAACGGTATTTCAATAATTTTGT
Found at i:23721773 original size:54 final size:53
Alignment explanation
Indices: 23721712--23721863 Score: 223
Period size: 54 Copynumber: 2.8 Consensus size: 53
23721702 TTGTAAATCG
* *
23721712 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACT-AGGGTATTTTGGTAATTTCACAAACCA
* * *
23721766 GTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGGTAATTTCACAAACCA
* *
23721820 GGGGTATTTTAGTAATTTTACAGACTAGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTT
23721864 TACTGATCGA
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 17 0.19
54 71 0.81
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (53 bp):
GGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTCACAAACCA
Found at i:23721808 original size:81 final size:80
Alignment explanation
Indices: 23721712--23721866 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 80
23721702 TTGTAAATCG
* ** *
23721712 GGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 GGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTCAGTAATTTCACAAACCAG-GGTATTTT
23721776 GGTAATTTTACAAACTA
64 GGTAATTTTACAAACTA
* * * *
23721793 GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAGACTAGGGTATTTTGG
1 GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCAGTAATTTCACAAACCAGGGTATTTTGG
23721858 TAATTTTAC
66 TAATTTTAC
23721867 TGATCGAGGG
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
80 19 0.29
81 45 0.69
82 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCAGTAATTTCACAAACCAGGGTATTTTGG
TAATTTTACAAACTA
Found at i:23721898 original size:80 final size:81
Alignment explanation
Indices: 23721608--23721918 Score: 229
Period size: 80 Copynumber: 3.8 Consensus size: 81
23721598 TACAAGGGTG
* * * * * * ** *
23721608 TTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTTGTAAACCAACGGTATTTCTA-TAAT
1 TTTTGGTAATTTTACAAACGAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT-TAGTAA-
* * *
23721672 TTTTAGAAAGTCAATGGTA
64 TTTTACAAA-CCAGTGGTA
* * *** **
23721691 TTTCT-GTAACTTTGTA-AATCG-GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTA
1 TTT-TGGTAA-TTT-TACAAACGAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTA
*
23721753 ATTTCACAAACCAGTGGTA
63 ATTTTACAAACCAGTGGTA
* *
23721772 TTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATT
1 TTTTGGTAATTTTACAAACGAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATT
* *
23721837 TTACAGACTAG-GGTA
66 TTACAAACCAGTGGTA
* * * * ** * *
23721852 TTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAGTTTTGTAAACCAATGGTGTTTTAGTAAT
1 TTTTGGTAATTTTAC-AAACGAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAAT
23721916 TTT
65 TTT
23721919 GTAAATCGAG
Statistics
Matches: 178, Mismatches: 42, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
79 2 0.01
80 64 0.36
81 62 0.35
82 7 0.04
83 36 0.20
84 5 0.03
85 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
TTTTGGTAATTTTACAAACGAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATT
TTACAAACCAGTGGTA
Found at i:23722045 original size:27 final size:27
Alignment explanation
Indices: 23721687--23722052 Score: 190
Period size: 27 Copynumber: 13.7 Consensus size: 27
23721677 GAAAGTCAAT
* * *
23721687 GGTATTTCT-GTAACTTTGTAAATCGGG
1 GGTATTT-TGGTAATTTTATAAATCGAG
* *
23721714 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
* * * *
23721741 GGTATTTCGGTAATTTCACAAA-CCAG
1 GGTATTTTGGTAATTTTATAAATCGAG
* *
23721767 TGGTATTTTGGTAATTTTACAAA-CTAGG
1 -GGTATTTTGGTAATTTTATAAATCGA-G
* * *
23721795 GGTATTTTAGTAATTTTACAAA-CCAGG
1 GGTATTTTGGTAATTTTATAAATCGA-G
* * * *
23721822 GGTATTTTAGTAATTTTACAGA-CTAG
1 GGTATTTTGGTAATTTTATAAATCGAG
*
23721848 GGTATTTTGGTAATTTTACT-GATCGAG
1 GGTATTTTGGTAATTTTA-TAAATCGAG
* * * * *
23721875 GGTATTTTGGTAGTTTTGTAAACCAAT
1 GGTATTTTGGTAATTTTATAAATCGAG
* * *
23721902 GGTGTTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
** * * *
23721929 GGTA-AATAGTAA-TTTGTAAATCAAG
1 GGTATTTTGGTAATTTTATAAATCGAG
*** * *
23721954 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
***** * * *
23721981 GGTAAAACAGTAATTCTGTAAATTGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
*** *
23722008 GGTAAAATGGTAATTCTATAAATCGAG
1 GGTATTTTGGTAATTTTATAAATCGAG
23722035 GGTATTTTGGTAATTTTA
1 GGTATTTTGGTAATTTTA
23722053 CAATTTGAGG
Statistics
Matches: 282, Mismatches: 49, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.06
26 38 0.13
27 227 0.80
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAAATCGAG
Found at i:23722888 original size:27 final size:27
Alignment explanation
Indices: 23722850--23723229 Score: 297
Period size: 27 Copynumber: 14.2 Consensus size: 27
23722840 CTCATCCATT
*
23722850 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
** *
23722877 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * *
23722904 TACCCCTAGTTTGTAAAATTACTAGAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * * *
23722931 TACCCTTGGTCTATAAAATCACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
*
23722958 TA-CCTCTGGTTTGTAAAATTAC--CAA
1 TACCCT-TGGTTTGTAAAATTACTAAAA
** *
23722983 -ACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* *
23723009 TACCCCTAGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * *
23723036 TACCTTTTGTTTATAAAATTA-TCAAAA
1 TACCCTTGGTTTGTAAAATTACT-AAAA
*
23723063 TACCAC-TGGTTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTGTAAAATTACTAAAA
* *
23723090 TACCCCTAGTTTGTAAAATTA-TCAAAA
1 TACCCTTGGTTTGTAAAATTACT-AAAA
* * *
23723117 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * * * *
23723144 TACCCCTGATTTGTGAAATTATTGAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* *** * *
23723171 TACCCTCGACCTGTAAAATTATTGAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* ** * *
23723198 TACCCTCGACTTGTAAAATTACGAAAG
1 TACCCTTGGTTTGTAAAATTACTAAAA
23723225 TACCC
1 TACCC
23723230 CTGTTTACAG
Statistics
Matches: 286, Mismatches: 56, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
24 15 0.05
25 5 0.02
26 7 0.02
27 259 0.91
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTGTAAAATTACTAAAA
Found at i:23722960 original size:81 final size:81
Alignment explanation
Indices: 23722850--23723164 Score: 359
Period size: 81 Copynumber: 3.9 Consensus size: 81
23722840 CTCATCCATT
* * * *
23722850 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTT
* *
23722915 TGTAAAATTACTAGAA
66 TGTAAAATTACCAAAA
* * * * * * *
23722931 TACCCTTGGTCTATAAAATCACCAAAATA-CCTCTGGTTTGTAAAATTACC--AA-ACCCTTGGT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCT-TGGTTTATAAAATTACCAAAATACCCCTGGT
**
23722992 TTACAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
* * * * *
23723009 TACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTATCAAAATACCACTGGTT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTT
23723074 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * * * *
23723090 TACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTT
*
23723155 TGTGAAATTA
66 TGTAAAATTA
23723165 TTGAAATACC
Statistics
Matches: 192, Mismatches: 37, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
78 57 0.30
79 4 0.02
80 5 0.03
81 126 0.66
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (81 bp):
TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTT
TGTAAAATTACCAAAA
Found at i:23723107 original size:159 final size:159
Alignment explanation
Indices: 23722850--23723142 Score: 433
Period size: 159 Copynumber: 1.8 Consensus size: 159
23722840 CTCATCCATT
* *
23722850 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTT
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTAGTT
* * * * * *
23722915 TGTAAAATTACTAGAATACCCTTGGTCTATAAAATCACCAAAATACCTCTGGTTTGTAAAATTAC
66 TGTAAAATTACCAAAATACCCCTAGTCTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTAC
23722980 CAAACCCTTGGTTTACAAAATTACCAAAA
131 CAAACCCTTGGTTTACAAAATTACCAAAA
* * * * *
23723009 TACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTATCAAAATACCACTGGTT
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTAGTT
* * * *
23723074 TGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTAC
66 TGTAAAATTACCAAAATACCCCTAGTCTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTAC
23723139 CAAA
131 CAAA
23723143 ATACCCCTGA
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
159 117 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (159 bp):
TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTAGTT
TGTAAAATTACCAAAATACCCCTAGTCTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTAC
CAAACCCTTGGTTTACAAAATTACCAAAA
Found at i:23723175 original size:54 final size:54
Alignment explanation
Indices: 23722850--23723148 Score: 397
Period size: 54 Copynumber: 5.6 Consensus size: 54
23722840 CTCATCCATT
* * *
23722850 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* * * *
23722904 TACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTCTATAAAATCACCAAAA
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* * *
23722958 TACCTCTGGTTTGTAAAATTACC--AA-ACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* * * *
23723009 TACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTATCAAAA
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* * * * * *
23723063 TACCACTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAA
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
23723117 TACCCCTAGTTTGTAAAATTACCAAAATACCC
1 TACCCCTAGTTTGTAAAATTACCAAAATACCC
23723149 CTGATTTGTG
Statistics
Matches: 215, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
51 43 0.20
52 2 0.01
53 2 0.01
54 168 0.78
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
Found at i:23723281 original size:27 final size:27
Alignment explanation
Indices: 23723159--23723283 Score: 94
Period size: 27 Copynumber: 4.7 Consensus size: 27
23723149 CTGATTTGTG
* * **
23723159 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTATCGAAATACCCTCGACTTACA
* **
23723186 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATCGAAATACCCTCGACTTACA
*
23723213 AAATTA-CGAAAGTACCC-CTG-TTTACA
1 AAATTATCGAAA-TACCCTC-GACTTACA
* *** *
23723239 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTATCGAAATACCCTCGACTTACA
23723266 AAATTATCGAAATACCCT
1 AAATTATCGAAATACCCT
23723284 TGTAGGGTAG
Statistics
Matches: 80, Mismatches: 13, Indels: 10
0.78 0.13 0.10
Matches are distributed among these distances:
26 19 0.24
27 61 0.76
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGACTTACA
Found at i:23723303 original size:27 final size:27
Alignment explanation
Indices: 23723273--23723486 Score: 252
Period size: 27 Copynumber: 7.9 Consensus size: 27
23723263 ACAAAATTAT
23723273 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
23723300 CGAAACACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
23723327 CGAAATACCCCTGTAGGGTA-AAATTAC
1 CGAAATACCCTTGTAGGGTAGAAA-TAC
** *
23723354 TAAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
23723381 CGAAATACCCTTGTAGGGTAGAAATAT
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
23723408 CAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
** * * *
23723435 TAAAAATACCCCTGTAGGGTAGAATTGC
1 -CGAAATACCCTTGTAGGGTAGAAATAC
* *
23723463 CGAGATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
23723487 TACCATTTTA
Statistics
Matches: 161, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.04
27 128 0.80
28 27 0.17
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:23723352 original size:81 final size:81
Alignment explanation
Indices: 23723265--23723491 Score: 314
Period size: 81 Copynumber: 2.8 Consensus size: 81
23723255 CTCGATTTAC
* * * *
23723265 AAAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAACACCCTTGTAGGGTAGAAATACCGA
1 AAAATTATCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAA
23723330 AATACCCCTGTAGGGT
66 AATACCCCTGTAGGGT
*
23723346 AAAATTA-CTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCA
1 AAAATTATC-AAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
23723410 AAATACCCCTGTAGGGT
65 AAATACCCCTGTAGGGT
* * * * * *
23723427 AGAATTACTAAAAATACCCCTGTAGGGTAGAATTGCCGAGATACCCTTGTGGGGTA-AAATTACC
1 AAAATTA-TCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACC
23723491 A
64 A
23723492 TTTTACCCCT
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.01
81 83 0.64
82 46 0.35
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAAATTATCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAA
AATACCCCTGTAGGGT
Found at i:23723801 original size:27 final size:26
Alignment explanation
Indices: 23723763--23723820 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
23723753 ATATATATAC
*
23723763 ATCTGTTCTGGTGGCCTAGCCACAAT
1 ATCTGTTCTGGTGACCTAGCCACAAT
* * *
23723789 ATCTGTATCTGGTGACTTCGTCACAAT
1 ATCTGT-TCTGGTGACCTAGCCACAAT
23723816 ATCTG
1 ATCTG
23723821 GCAGCCTCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
ATCTGTTCTGGTGACCTAGCCACAAT
Found at i:23723948 original size:6 final size:6
Alignment explanation
Indices: 23723939--23724044 Score: 92
Period size: 6 Copynumber: 17.3 Consensus size: 6
23723929 TTGCATTCAT
* *
23723939 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
23723989 ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG ATTCTC ATTTTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
23724036 AGTTCTG AT
1 A-TTCTG AT
23724045 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
5 5 0.06
6 68 0.83
7 6 0.07
8 3 0.04
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:23724002 original size:31 final size:25
Alignment explanation
Indices: 23723939--23724023 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
23723929 TTGCATTCAT
23723939 ATTCTGATTCTGATTCTGTTACTTG
1 ATTCTGATTCTGATTCTGTTACTTG
* * *
23723964 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACTTG
*
23723989 ATTCTGATTCTGATTTTGATT--TTG
1 ATTCTGATTCTGATTCTG-TTACTTG
23724013 ATTCTGATTCT
1 ATTCTGATTCT
23724024 CATTTTGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 12 0.23
25 38 0.73
26 2 0.04
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACTTG
Found at i:23726126 original size:27 final size:27
Alignment explanation
Indices: 23726070--23726147 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
23726060 ATACTACTGG
*
23726070 TTTGTGAAATTACCAAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCTCAA
* **
23726097 TTTGTAAAATTACCATAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCCTCAA
**
23726124 TTTACAAAATTA-CAGAAATACCCT
1 TTTGTAAAATTACCA-AAATACCCT
23726148 TAACTTTCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.05
27 41 0.95
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTCAA
Found at i:23726148 original size:27 final size:27
Alignment explanation
Indices: 23726113--23726205 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
23726103 AAATTACCAT
23726113 AATACCCTTGATTTACAAAATTACAGA
1 AATACCCTTGATTTACAAAATTACAGA
* *
23726140 AATACCCTTAACTTT-CTAAAAATTATAGA
1 AATACCCTTGA-TTTAC--AAAATTACAGA
* * * *
23726169 AATACCATTGGTGTACAAAATTACTGA
1 AATACCCTTGATTTACAAAATTACAGA
23726196 AATACCCTTG
1 AATACCCTTG
23726206 GTTTGTAGAT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 29 0.55
28 5 0.09
29 19 0.36
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
AATACCCTTGATTTACAAAATTACAGA
Found at i:23726286 original size:27 final size:27
Alignment explanation
Indices: 23726254--23726305 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
23726244 GACTAAAATA
23726254 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
23726281 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
23726306 TACCTTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:23727167 original size:26 final size:26
Alignment explanation
Indices: 23727138--23727300 Score: 215
Period size: 26 Copynumber: 6.3 Consensus size: 26
23727128 GAGGAAGTGC
23727138 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
23727164 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * *
23727190 GAAAGGGCTTATGCTCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
23727216 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
23727242 AAAAGGGCTTACGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
23727268 -AAAGGGATTTTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
23727291 AAAAGAGGCT
1 AAAAG-GGCT
23727301 AGGCCTCCAG
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
24 7 0.06
25 17 0.14
26 94 0.80
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:23731936 original size:20 final size:20
Alignment explanation
Indices: 23731910--23731956 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
23731900 ATTTTGATAT
23731910 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
23731930 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
23731950 ACATGAT
1 ACATGAT
23731957 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:23732078 original size:25 final size:26
Alignment explanation
Indices: 23732006--23732103 Score: 146
Period size: 25 Copynumber: 3.8 Consensus size: 26
23731996 GAGGAAGTGC
23732006 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
23732032 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* **
23732059 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
23732084 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
23732104 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 31 0.46
26 10 0.15
27 26 0.39
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:23732577 original size:27 final size:27
Alignment explanation
Indices: 23732539--23732593 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
23732529 GCCACGGTGA
23732539 TTGCTTTTAGGCTTTTGAATAAGTGTT
1 TTGCTTTTAGGCTTTTGAATAAGTGTT
23732566 TTGCTTTTAGGCTTTTGAATAAGTGTT
1 TTGCTTTTAGGCTTTTGAATAAGTGTT
23732593 T
1 T
23732594 GGTTTTCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.07, G:0.22, T:0.53
Consensus pattern (27 bp):
TTGCTTTTAGGCTTTTGAATAAGTGTT
Found at i:23738497 original size:54 final size:54
Alignment explanation
Indices: 23738430--23738608 Score: 159
Period size: 54 Copynumber: 3.3 Consensus size: 54
23738420 CCTCGATGTG
* * *
23738430 AAATTACCGAAATACCCCT-GTAGGATAGAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGTTTGTA
* ** * *
23738484 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGTTTGTA
* * * * **
23738538 AAATTACCGAAATAACCTCAATTTA--TAAAATTACCAAAATACCCCT-GATTTACA
1 AAATTACCGAAAT-ACCCCTA-GTAGGTAAAATTACCAAAATACCACTAG-TTTGTA
*
23738592 AAATTACAGAAATACCC
1 AAATTACCGAAATACCC
23738609 TTGACTTTCT
Statistics
Matches: 102, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 4 0.04
54 89 0.87
55 8 0.08
56 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.27
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGTTTGTA
Found at i:23738588 original size:27 final size:27
Alignment explanation
Indices: 23738430--23738622 Score: 144
Period size: 27 Copynumber: 7.1 Consensus size: 27
23738420 CCTCGATGTG
* **
23738430 AAATTACCGAAATACCCCTG-TAGGATA
1 AAATTACCAAAATACCCCTGAT-TTATA
* * *
23738457 GAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTATA
*
23738484 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTATA
* * * *
23738511 AAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGATTTATA
* * *
23738538 AAATTACCGAAATA-ACCTCAATTTATA
1 AAATTACCAAAATACCCCT-GATTTATA
*
23738565 AAATTACCAAAATACCCCTGATTTACA
1 AAATTACCAAAATACCCCTGATTTATA
* *
23738592 AAATTA-CAGAAATACCCTTGACTTTCTA
1 AAATTACCA-AAATACCCCTGA-TTTATA
23738620 AAA
1 AAA
23738623 ATTATAGAAA
Statistics
Matches: 134, Mismatches: 25, Indels: 13
0.78 0.15 0.08
Matches are distributed among these distances:
26 4 0.03
27 119 0.89
28 11 0.08
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTATA
Found at i:23738659 original size:27 final size:27
Alignment explanation
Indices: 23738559--23738671 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
23738549 ATAACCTCAA
* ** * *
23738559 TTTATAAAATTACCAAAATACCCCTGA
1 TTTAAAAAATTACTGAAATACCCTTGG
* * *
23738586 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTAAAAAATTACTGAAATACCCTTG-G
* *
23738614 TTTCTAAAAATTA-TAGAAATACCATTGG
1 TTT-AAAAAATTACT-GAAATACCCTTGG
*
23738642 TTTAAAAAATTACTGAAATACCTTTGG
1 TTTAAAAAATTACTGAAATACCCTTGG
23738669 TTT
1 TTT
23738672 GTAGATTTAC
Statistics
Matches: 70, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 45 0.64
28 7 0.10
29 18 0.26
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTAAAAAATTACTGAAATACCCTTGG
Found at i:23738800 original size:27 final size:28
Alignment explanation
Indices: 23738725--23738801 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
23738715 ACCCCTAATA
*
23738725 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
23738752 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
23738779 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
23738802 ATGTTCCGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.05
27 36 0.84
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:23739637 original size:25 final size:24
Alignment explanation
Indices: 23739599--23739668 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
23739589 AAGAAGTGCT
**
23739599 AAAAGGGCACTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
23739623 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
23739648 AGAAAGGGCTTTACCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
23739669 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:23739681 original size:24 final size:24
Alignment explanation
Indices: 23739611--23739681 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
23739601 AAGGGCACTG
* *
23739611 CCCCAGTTTACCGAAAAGGGCTTTG
1 CCCCAGTTTATC-AAAAGGGCTTTA
23739636 CCCCAGTTTATCAGAAAGGGCTTTA
1 CCCCAGTTTATCA-AAAGGGCTTTA
*
23739661 CCCCAG-TTATTAAAAGAGGCT
1 CCCCAGTTTATCAAAAG-GGCT
23739682 AGGCCTCCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 4 0.10
24 10 0.24
25 27 0.66
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (24 bp):
CCCCAGTTTATCAAAAGGGCTTTA
Found at i:23742249 original size:26 final size:27
Alignment explanation
Indices: 23742187--23742341 Score: 174
Period size: 27 Copynumber: 5.8 Consensus size: 27
23742177 TACTGAAATG
*
23742187 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
23742214 CCCTCGATTTATAGAATTTCC-GTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
*
23742240 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
23742267 CCCTCGATTTATAAAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
23742294 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
23742321 CCCTCGA-TTAT-GAAATTACCA
1 CCCTCGATTTATAG-AATTACCA
23742342 AAATACCCTT
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
26 33 0.31
27 73 0.68
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:23742267 original size:53 final size:54
Alignment explanation
Indices: 23742187--23742338 Score: 193
Period size: 53 Copynumber: 2.9 Consensus size: 54
23742177 TACTGAAATG
** * *
23742187 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATT-TCCGTTCA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTATCAGTTCA
* *
23742240 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTATCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTATCAGTTCA
* * *
23742294 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGA-TTATGAAATTA
1 CCCTCGA-TTTACAGAATTACCATTTTACCCTCGATTTATAAAATTA
23742339 CCAAAATACC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 53 0.60
54 35 0.40
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTATCAGTTCA
Found at i:23742349 original size:80 final size:79
Alignment explanation
Indices: 23742167--23742368 Score: 185
Period size: 80 Copynumber: 2.5 Consensus size: 79
23742157 AATACTTTAG
** * * * * *
23742167 TTTACCAAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATT
1 TTTA-CAAATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATT
*
23742232 TCCGTTCACCCTCGA
65 ACCGTTCACCCTCGA
*** *
23742247 TTTACAGAATTACCATTTTACCCTCGATTTATAAAATTATCATTTTACCCTC-AGTTTACAAAAT
1 TTTACA-AATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTACAAAAT
*
23742311 TACCGTTTTACCCTCGA
64 TACCG-TTCACCCTCGA
* * *
23742328 -TTATGAAATTACCAAAATACCCT-TAGTTTGTAAAATTACCA
1 TTTA-CAAATTACCAAAATACCCTCGA-TTTATAAAATTACCA
23742369 AAATACCCCT
Statistics
Matches: 97, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
79 4 0.04
80 82 0.85
81 11 0.11
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (79 bp):
TTTACAAATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTA
CCGTTCACCCTCGA
Found at i:23742363 original size:53 final size:54
Alignment explanation
Indices: 23742201--23742474 Score: 175
Period size: 54 Copynumber: 5.1 Consensus size: 54
23742191 CGATTTGTAG
* * ** *
23742201 AATTACCATTTTACCCTCGATTTATAGAATTTCC--GTTCACCCTC-GATTTACAG
1 AATTACCATTTTACCCTCGATTTATAAAATTACCAAAAT-ACCCTCAG-TTTACAA
* ***
23742254 AATTACCATTTTACCCTCGATTTATAAAATTATCATTTTACCCTCAGTTTACAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAGTTTACAA
* * * **
23742308 AATTACCGTTTTACCCTCGA-TTATGAAATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAGTTTACAA
*** * * ** * ***
23742361 AATTACCAAAATACCC-CTAGTTTGTAAAATTACTGAAATACCACT-GGTTTGTGA
1 AATTACCATTTTACCCTCGA-TTTATAAAATTACCAAAATACC-CTCAGTTTACAA
*** * * *
23742415 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAG-TTTACAA
23742469 AATTAC
1 AATTAC
23742475 AGAAATACCC
Statistics
Matches: 180, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.01
53 70 0.39
54 101 0.56
55 7 0.04
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAGTTTACAA
Found at i:23742366 original size:27 final size:27
Alignment explanation
Indices: 23742333--23742569 Score: 176
Period size: 27 Copynumber: 8.7 Consensus size: 27
23742323 CTCGATTATG
23742333 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
*
23742360 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
** * *
23742387 AAATTACTGAAATACCAC-TGGTTTGTG
1 AAATTACCAAAATACC-CTTAGTTTGTA
* *
23742414 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* **
23742441 AAATTACCAAAATACCCCT-GATTTACA
1 AAATTACCAAAATACCCTTAG-TTTGTA
* *
23742468 AAATTA-CAGAAATACCCTTGACTTTTTAA
1 AAATTACCA-AAATACCCTT-AGTTTGT-A
* * * * **
23742497 AAACTA-TAGAAATACCATTGGTTTACA
1 AAATTACCA-AAATACCCTTAGTTTGTA
** *
23742524 AAATTACTGAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
23742551 GATTTACCAAAACACCCTT
1 AAATTACCAAAATACCCTT
23742570 GTAGGATGAA
Statistics
Matches: 165, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.02
27 137 0.83
28 8 0.05
29 17 0.10
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAGTTTGTA
Found at i:23742440 original size:81 final size:81
Alignment explanation
Indices: 23742331--23742483 Score: 245
Period size: 81 Copynumber: 1.9 Consensus size: 81
23742321 CCCTCGATTA
* * ** *
23742331 TGAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACT
1 TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACA
23742395 GAAATACCACTGGTTTG
65 GAAATACCACTGGTTTG
23742412 TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAG
1 TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAG
23742477 AAATACC
66 AAATACC
23742484 CTTGACTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAG
AAATACCACTGGTTTG
Found at i:23743512 original size:25 final size:24
Alignment explanation
Indices: 23743474--23743541 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 24
23743464 AGGAAGTGCT
*
23743474 AAAAGGGCTCTGCCCCAGCTTACC
1 AAAAGGGCTTTGCCCCAGCTTACC
* *
23743498 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGCTTACC
*
23743523 AGAAAGGACTTTGCCCCAG
1 A-AAAGGGCTTTGCCCCAG
23743542 TTATTAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGCTTACC
Found at i:23743750 original size:42 final size:42
Alignment explanation
Indices: 23743691--23743782 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
23743681 TAGTCTCCCC
* *
23743691 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
*
23743733 AAATGGGCTTGCGTACATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
23743775 AAATGGGC
1 AAATGGGC
23743783 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
Found at i:23753635 original size:45 final size:45
Alignment explanation
Indices: 23753579--23753665 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
23753569 TATGTAATCT
23753579 GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
* *
23753624 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
23753666 CGTGTTTCGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (45 bp):
GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:23766291 original size:49 final size:49
Alignment explanation
Indices: 23766177--23766364 Score: 232
Period size: 49 Copynumber: 3.8 Consensus size: 49
23766167 TGAGGTCGCA
* ** * * *
23766177 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* *
23766228 TGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
23766277 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
23766326 TGTGTAGTACTATGTGCAGGCTACTATGTGCACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
23766365 GCTTTGGCTA
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
49 86 0.71
50 1 0.01
51 34 0.28
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:23768606 original size:13 final size:14
Alignment explanation
Indices: 23768588--23768629 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
23768578 TTTCATTTTT
23768588 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
23768601 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
23768616 ATTTTAACTAATAT
1 ATTTTAA-TAATAT
23768630 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 10 0.42
16 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:23768620 original size:15 final size:16
Alignment explanation
Indices: 23768593--23768622 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23768583 TTTTTATTTT
23768593 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
23768609 AATAAT-AATTTTAA
1 AATAATAAATTTTAA
23768623 CTAATATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:23768710 original size:15 final size:17
Alignment explanation
Indices: 23768666--23768712 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
23768656 ATATTAATAC
23768666 TTTAATAATAAATATTTA
1 TTTAATAATAAATA-TTA
*
23768684 TTTTAATTATAAATA-TA
1 -TTTAATAATAAATATTA
23768701 -TTAATAATAAAT
1 TTTAATAATAAAT
23768713 GTTTTGTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 11 0.42
17 2 0.08
19 13 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAATAATAAATATTA
Found at i:23769626 original size:20 final size:19
Alignment explanation
Indices: 23769599--23769654 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
23769589 TTTAAATAAA
23769599 AAAATTTAAAATATTTTTT
1 AAAATTTAAAATATTTTTT
*
23769618 AACAATTTAAAATAATTTTT
1 AA-AATTTAAAATATTTTTT
23769638 AAAATTTTAAAATATTT
1 AAAA-TTTAAAATATTT
23769655 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAATTTAAAATATTTTTT
Done.