Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 77 of 373
Found at i:23769661 original size:20 final size:19
Alignment explanation
Indices: 23769597--23769681 Score: 64
Period size: 20 Copynumber: 4.3 Consensus size: 19
23769587 TCTTTAAATA
*
23769597 AAAAAATTTAAAATATTTTTT
1 AAAAATTTTAAAATA--TTTT
*
23769618 AACAA-TTTAAAATAATTTT
1 AAAAATTTTAAAAT-ATTTT
*
23769637 TAAAATTTTAAAATATTTAT
1 AAAAATTTTAAAATATTT-T
***
23769657 AAAAATAAAAAAATAATTTT
1 AAAAATTTTAAAAT-ATTTT
23769677 AAAAA
1 AAAAA
23769682 ATTATAAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
19 11 0.21
20 33 0.62
21 9 0.17
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATTTTAAAATATTTT
Found at i:23769682 original size:22 final size:22
Alignment explanation
Indices: 23769652--23769694 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
23769642 TTTTAAAATA
*
23769652 TTTATAAAAATAAAAAAATAAT
1 TTTAAAAAAATAAAAAAATAAT
* *
23769674 TTTAAAAAATTATAAAAATAA
1 TTTAAAAAAATAAAAAAATAA
23769695 AAAAATCTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAAAAATAAAAAAATAAT
Found at i:23769689 original size:30 final size:31
Alignment explanation
Indices: 23769640--23769700 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
23769630 TAATTTTTAA
*
23769640 AATTTTAAAATATTTATAAAAATAAAAAAAT
1 AATTTTAAAATAATTATAAAAATAAAAAAAT
23769671 AATTTTAAAA-AATTATAAAAATAAAAAAAT
1 AATTTTAAAATAATTATAAAAATAAAAAAAT
23769701 CTGAAGAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 19 0.66
31 10 0.34
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AATTTTAAAATAATTATAAAAATAAAAAAAT
Found at i:23778261 original size:19 final size:19
Alignment explanation
Indices: 23778234--23778275 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
23778224 TTGACTAATC
*
23778234 AATATAATTATAAA-ATTA
1 AATAAAATTATAAAGATTA
23778252 TAATAAAATTATAAAGATTA
1 -AATAAAATTATAAAGATTA
23778272 AATA
1 AATA
23778276 TGAATTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
AATAAAATTATAAAGATTA
Found at i:23778329 original size:36 final size:36
Alignment explanation
Indices: 23778285--23778356 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
23778275 ATGAATTTTA
23778285 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
1 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
23778321 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
1 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
23778357 TTTTCTTATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (36 bp):
GACCTAATAAAATGACCAAAACTTAAACATCATCTT
Found at i:23779137 original size:60 final size:59
Alignment explanation
Indices: 23779034--23779206 Score: 197
Period size: 60 Copynumber: 2.9 Consensus size: 59
23779024 TTAATATAAC
* * * * *
23779034 ATTTAGTACTTGAACTTGACACTTTTTTCTAGTTTGATGCCTAAACTTCTTTTTGGCCCA
1 ATTTAGTAATTGAACTTGACACTTTTTTTTAATTTGGTACCTAAACTT-TTTTTGGCCCA
* *
23779094 ATTTGGTATTTGAACTTGACACTTTTTTTTAATTTGGTACCTAAACTTTTTTTTGGCCCA
1 ATTTAGTAATTGAACTTGACACTTTTTTTTAATTTGGTACCTAAAC-TTTTTTTGGCCCA
* * * *
23779154 ATTTAGTAACTGAACTTG--ATTTTTTTTCCTAATTTGGTACTTAAGCTTTTTTT
1 ATTTAGTAATTGAACTTGACACTTTTTTT--TAATTTGGTACCTAAACTTTTTTT
23779207 AAGTTCAATT
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
58 8 0.08
59 7 0.07
60 81 0.83
61 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.50
Consensus pattern (59 bp):
ATTTAGTAATTGAACTTGACACTTTTTTTTAATTTGGTACCTAAACTTTTTTTGGCCCA
Found at i:23785362 original size:14 final size:14
Alignment explanation
Indices: 23785343--23785381 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
23785333 TTGTTTTAGT
*
23785343 GAAAATGATTTTTA
1 GAAAATAATTTTTA
*
23785357 GAAAATAATTTTTG
1 GAAAATAATTTTTA
23785371 GAAAATAATTT
1 GAAAATAATTT
23785382 ATTTTTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (14 bp):
GAAAATAATTTTTA
Found at i:23785405 original size:17 final size:17
Alignment explanation
Indices: 23785358--23785405 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
23785348 TGATTTTTAG
23785358 AAAA-TAATTTTTGGAA
1 AAAATTAATTTTTGGAA
* *
23785374 AATAATTTATTTTTTGAA
1 AA-AATTAATTTTTGGAA
23785392 AAAATTAATATTTT
1 AAAATTAAT-TTTT
23785406 CTGATATTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 8 0.31
18 16 0.62
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
AAAATTAATTTTTGGAA
Found at i:23785405 original size:18 final size:20
Alignment explanation
Indices: 23785364--23785405 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
23785354 TTAGAAAATA
23785364 ATTTTTGGAAAATAATT--T
1 ATTTTTGGAAAATAATTAAT
*
23785382 ATTTTTTGAAAA-AATTAAT
1 ATTTTTGGAAAATAATTAAT
23785401 ATTTT
1 ATTTT
23785406 CTGATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 11 0.52
19 6 0.29
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTTTGGAAAATAATTAAT
Found at i:23785864 original size:15 final size:15
Alignment explanation
Indices: 23785844--23785895 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
23785834 ACTACAAAAC
23785844 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
23785859 ATTTATAATTGTAATACAT
1 ATTTATTA-T-TAAT--AT
*
23785878 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
23785893 ATT
1 ATT
23785896 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:23785919 original size:19 final size:19
Alignment explanation
Indices: 23785895--23785938 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
23785885 ATTAAAATAT
23785895 TAATATTGAATA-TTTTCAA
1 TAATATTGAATAGTTTT-AA
23785914 TAATATTGAATAGTTTTAA
1 TAATATTGAATAGTTTTAA
23785933 TAATAT
1 TAATAT
23785939 GTGAGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
TAATATTGAATAGTTTTAA
Found at i:23785978 original size:16 final size:16
Alignment explanation
Indices: 23785947--23785983 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
23785937 ATGTGAGTAA
23785947 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
23785963 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
23785979 TATTA
1 TATTA
23785984 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:23786050 original size:16 final size:16
Alignment explanation
Indices: 23786029--23786061 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23786019 AATAACTTAT
*
23786029 ATTTATTATATTAATA
1 ATTTATTATATGAATA
23786045 ATTTATTATATGAATA
1 ATTTATTATATGAATA
23786061 A
1 A
23786062 ATATAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
ATTTATTATATGAATA
Found at i:23795424 original size:24 final size:24
Alignment explanation
Indices: 23795396--23795456 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
23795386 AACCGAATTT
* * *
23795396 GCACACATAGTGCTA-ATTATACTC
1 GCACACATAGTGCCATAGTAAAC-C
23795420 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
23795444 GCACACATAGTGC
1 GCACACATAGTGC
23795457 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:23798734 original size:42 final size:43
Alignment explanation
Indices: 23798688--23798871 Score: 167
Period size: 42 Copynumber: 4.2 Consensus size: 43
23798678 CCCCAACATA
*
23798688 GTCTTACATGGGTCTC-CATATCGATGCCATATCCCAAATATG
1 GTCTTACATGGGTCTCTCATATCGATGCCATATCCCAGATATG
* * * * * *
23798730 GTCTTATATGAAGTCTCATGTCGGTGTCGATGCCATGTCCCAGACATG
1 GTCTTACATG-GGTCTC---TC-ATATCGATGCCATATCCCAGATATG
* * *
23798778 GTCTTACATGGGAC-CTCATATCGATGCCATGTCCTAGATATG
1 GTCTTACATGGGTCTCTCATATCGATGCCATATCCCAGATATG
** * * *
23798820 GTCTTACAT-GGAATCTCATATCAACGACATATCCCAGATATG
1 GTCTTACATGGGTCTCTCATATCGATGCCATATCCCAGATATG
23798862 GTCTTACATG
1 GTCTTACATG
23798872 AAATCACATA
Statistics
Matches: 114, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
41 3 0.03
42 71 0.62
43 7 0.06
46 1 0.01
47 3 0.03
48 29 0.25
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (43 bp):
GTCTTACATGGGTCTCTCATATCGATGCCATATCCCAGATATG
Found at i:23798824 original size:90 final size:90
Alignment explanation
Indices: 23798671--23798838 Score: 234
Period size: 90 Copynumber: 1.9 Consensus size: 90
23798661 GAATGCTAAA
*
23798671 GCCATGTCCCCAACATAGTCTTACATGGGTCTCCATATCGATGCCATATCCCAAATATGGTCTTA
1 GCCATGTCCCCAACATAGTCTTACATGGGCCTCCATATCGATGCCATATCCCAAATATGGTCTTA
*
23798736 TAT-GAAGTCTCATGTCGGTGTCGAT
66 CATGGAA-TCTCATGTCGGTGTCGAT
* * * *
23798761 GCCATGT-CCCAGACATGGTCTTACATGGGACCT-CATATCGATGCCATGTCCTAGATATGGTCT
1 GCCATGTCCCCA-ACATAGTCTTACATGGG-CCTCCATATCGATGCCATATCCCAAATATGGTCT
23798824 TACATGGAATCTCAT
64 TACATGGAATCTCAT
23798839 ATCAACGACA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
89 4 0.06
90 60 0.87
91 5 0.07
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (90 bp):
GCCATGTCCCCAACATAGTCTTACATGGGCCTCCATATCGATGCCATATCCCAAATATGGTCTTA
CATGGAATCTCATGTCGGTGTCGAT
Found at i:23798996 original size:49 final size:48
Alignment explanation
Indices: 23798851--23799063 Score: 223
Period size: 48 Copynumber: 4.4 Consensus size: 48
23798841 CAACGACATA
* ** * * *
23798851 TCCCAGATATGGTCTTACA-TGAAATCACATACCGATGCCGATGCCATA
1 TCCCAGACATGGTCTTACACT-AGCTCACATATCAATGCCGATGCCATG
* * * *
23798899 TCCTAGATATGGTCTTACACTGGCAT-ACATATCAATACCGATGCCATG
1 TCCCAGACATGGTCTTACACTAGC-TCACATATCAATGCCGATGCCATG
* * *
23798947 TCCCAGACATGGTTTTACACTAGCTCTCATCTCAGATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTAGCTCACATATCA-ATGCCGATGCCATG
* * * * *
23798996 TCCCAGGCATGGTCTTATACTAGCACACATATTAACGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATG
23799044 TCCCAGACATGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
23799064 GGGATCTCAT
Statistics
Matches: 136, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
47 1 0.01
48 93 0.68
49 42 0.31
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (48 bp):
TCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATG
Found at i:23799072 original size:97 final size:97
Alignment explanation
Indices: 23798851--23799073 Score: 261
Period size: 97 Copynumber: 2.3 Consensus size: 97
23798841 CAACGACATA
* * * * * *
23798851 TCCCAGATATGGTCTTACATGAAATCACATAC-C-GATGCCGATGCCATATCCTAGATATGGTCT
1 TCCCAGACATGGTCTTACACGAGATCTCAT-CTCAGATGCCGATGCCATATCCCAGACATGGTCT
* * *
23798914 TACACTGGCATACATATCAATACCGATGCCATG
65 TACACTAGCACACATATCAACACCGATGCCATG
* * * * *
23798947 TCCCAGACATGGTTTTACACTAGCTCTCATCTCAGATGCCGATGCCATGTCCCAGGCATGGTCTT
1 TCCCAGACATGGTCTTACACGAGATCTCATCTCAGATGCCGATGCCATATCCCAGACATGGTCTT
* * *
23799012 ATACTAGCACACATATTAACGCCGATGCCATG
66 ACACTAGCACACATATCAACACCGATGCCATG
*
23799044 TCCCAGACATGGTCTTACACGGGATCTCAT
1 TCCCAGACATGGTCTTACACGAGATCTCAT
23799074 TAATTGTGGT
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
95 1 0.01
96 24 0.23
97 79 0.76
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (97 bp):
TCCCAGACATGGTCTTACACGAGATCTCATCTCAGATGCCGATGCCATATCCCAGACATGGTCTT
ACACTAGCACACATATCAACACCGATGCCATG
Found at i:23801606 original size:21 final size:20
Alignment explanation
Indices: 23801582--23801621 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
23801572 CATGTATTTT
23801582 AATGATTGATGATAGGTTATG
1 AATGATTGATGATA-GTTATG
*
23801603 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
23801622 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:23801629 original size:20 final size:21
Alignment explanation
Indices: 23801587--23801629 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
23801577 ATTTTAATGA
*
23801587 TTGATGATAGGTTATGAATGT
1 TTGATGATAGGTTATGAAAGT
23801608 TTGATGATA-GTTAT-ACAAGT
1 TTGATGATAGGTTATGA-AAGT
23801628 TT
1 TT
23801630 TGTTAAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 10 0.50
21 9 0.45
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.44
Consensus pattern (21 bp):
TTGATGATAGGTTATGAAAGT
Found at i:23806251 original size:131 final size:131
Alignment explanation
Indices: 23806092--23806486 Score: 490
Period size: 131 Copynumber: 3.0 Consensus size: 131
23806082 GGATTTGGAG
* * *
23806092 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAA-CAGGAGATCGCAACCCAAC
1 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGA-GAAATCGCAACCCAGC
* * * *
23806156 ACGATAGGGCATGATTCCCCGAATTGCCAAACATCAAACATTACCTTCGTTTTAGAGAATTTTTA
65 ACGATAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTA
23806221 AA
130 AA
* * * * * *
23806223 GACATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACGAATGAGAAATCACAACCTAGCA
1 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCA
* * ** *
23806288 CGATAGGGCACGATTCTGCGAATTACCAAACATCGAGTATCACCTTTGTTTT-GAAGAATTTTTA
66 CGATAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAG-AGAATTTTTA
23806352 GAA
130 -AA
* * * *
23806355 AACATG-GATGAAATTCTAAAGGGACATTCGATTATTTTGAGCAAATGAGAAATTGCAACCCAGC
1 AACATGAG-TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGC
* * ** *
23806419 ACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGTCTTCGTTTTAAAGAATTTTTA
65 ACGATAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTA
23806484 AA
130 AA
23806486 A
1 A
23806487 GAATGATTAT
Statistics
Matches: 221, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
130 1 0.00
131 111 0.50
132 109 0.49
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (131 bp):
AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCA
CGATAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTAA
A
Found at i:23807877 original size:19 final size:20
Alignment explanation
Indices: 23807835--23807878 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
23807825 GTGCACATAC
*
23807835 AAATAAATATATATTTATAG
1 AAATAAATATATATTTACAG
23807855 AAATAAATA-ATATTGTACA-
1 AAATAAATATATATT-TACAG
23807874 AAATA
1 AAATA
23807879 TTAAAACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (20 bp):
AAATAAATATATATTTACAG
Found at i:23809095 original size:22 final size:23
Alignment explanation
Indices: 23809043--23809095 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
23809033 GTAAAGGGAC
23809043 ATTTAATATCATTTATTTATTTTT
1 ATTT-ATATCATTTATTTATTTTT
* *
23809067 TTATTATAT-ATTTTTTTATTTTT
1 AT-TTATATCATTTATTTATTTTT
23809090 ATTTAT
1 ATTTAT
23809096 TTTGTATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 4 0.16
23 14 0.56
24 5 0.20
25 2 0.08
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (23 bp):
ATTTATATCATTTATTTATTTTT
Found at i:23809098 original size:15 final size:15
Alignment explanation
Indices: 23809055--23809098 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
23809045 TTAATATCAT
23809055 TTATTTATTTTTTTA
1 TTATTTATTTTTTTA
*
23809070 TTATATATTTTTTTA
1 TTATTTATTTTTTTA
23809085 TT-TTTATTTATTTT
1 TTATTTATTT-TTTT
23809099 GTATTTGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 6 0.23
15 20 0.77
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (15 bp):
TTATTTATTTTTTTA
Found at i:23809956 original size:50 final size:47
Alignment explanation
Indices: 23809876--23809981 Score: 124
Period size: 50 Copynumber: 2.2 Consensus size: 47
23809866 TTCCGCTTGT
* *
23809876 TGATTTTTTGTAAAATAATTATGTATTTTTAAATATTTTATGTCTTTTTC
1 TGATTTTTTGAAAAATAATTATGTATTTTTAAAT-TTTT-TGT-ATTTTC
* * *
23809926 TGATTTTTT-AAAAATAATATTTGTTTTTTTAGATTTTTTGTATTTTC
1 TGATTTTTTGAAAAATAAT-TATGTATTTTTAAATTTTTTGTATTTTC
23809973 TGATTTTTT
1 TGATTTTTT
23809982 TAATTAAATG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
47 14 0.28
48 3 0.06
49 12 0.24
50 21 0.42
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.63
Consensus pattern (47 bp):
TGATTTTTTGAAAAATAATTATGTATTTTTAAATTTTTTGTATTTTC
Found at i:23809982 original size:48 final size:50
Alignment explanation
Indices: 23809876--23809984 Score: 129
Period size: 49 Copynumber: 2.2 Consensus size: 50
23809866 TTCCGCTTGT
*
23809876 TGATTTTTTGT-AAAATAATTATGTATTTTTAAATATTTTATGTCTTTTTC
1 TGATTTTTT-TAAAAATAATTATGTATTTTTAAATATTTTATGTCATTTTC
* * *
23809926 TGA-TTTTTTAAAAATAATATTTGTTTTTTTAGAT-TTTT-TGT-ATTTTC
1 TGATTTTTTTAAAAATAAT-TATGTATTTTTAAATATTTTATGTCATTTTC
23809973 TGATTTTTTTAA
1 TGATTTTTTTAA
23809985 TTAAATGTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
47 8 0.15
48 12 0.23
49 17 0.33
50 15 0.29
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (50 bp):
TGATTTTTTTAAAAATAATTATGTATTTTTAAATATTTTATGTCATTTTC
Found at i:23811712 original size:29 final size:29
Alignment explanation
Indices: 23811645--23811713 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 29
23811635 TGAACCTCAA
23811645 GGTTCAAGG-TTTGGGGTTACAAGTTTTG
1 GGTTCAAGGTTTTGGGGTTACAAGTTTTG
* *** **
23811673 TGTTTGGGGTTTTGGGGTTTTAAGTTTTG
1 GGTTCAAGGTTTTGGGGTTACAAGTTTTG
*
23811702 GGTTCATGGTTT
1 GGTTCAAGGTTT
23811714 GAGATTCTAG
Statistics
Matches: 30, Mismatches: 10, Indels: 1
0.73 0.24 0.02
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.12, C:0.04, G:0.36, T:0.48
Consensus pattern (29 bp):
GGTTCAAGGTTTTGGGGTTACAAGTTTTG
Found at i:23812391 original size:21 final size:20
Alignment explanation
Indices: 23812365--23812406 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
23812355 GTTAGCGAAC
23812365 AAATATATAAATATAAATAAA
1 AAATATATAAATA-AAATAAA
* *
23812386 AAATATTTATATAAAATAAA
1 AAATATATAAATAAAATAAA
23812406 A
1 A
23812407 TAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATATATAAATAAAATAAA
Found at i:23812463 original size:29 final size:29
Alignment explanation
Indices: 23812427--23812485 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
23812417 TATTTAAATT
23812427 ATTAGATACGAAAAACCAATAAGATTATG
1 ATTAGATACGAAAAACCAATAAGATTATG
*
23812456 ATTAGATATGAAAAACCAATAAGATTATG
1 ATTAGATACGAAAAACCAATAAGATTATG
23812485 A
1 A
23812486 AAACCAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.25
Consensus pattern (29 bp):
ATTAGATACGAAAAACCAATAAGATTATG
Found at i:23816878 original size:18 final size:18
Alignment explanation
Indices: 23816851--23816890 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
23816841 TAGGTAGGTC
*
23816851 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
*
23816869 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
23816887 TCCT
1 TCCT
23816891 TTTCTCAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:23817181 original size:21 final size:22
Alignment explanation
Indices: 23817138--23817181 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
23817128 CCACAACTAG
*
23817138 ATCCCCTATCGGAGGAACCACA
1 ATCCCCTACCGGAGGAACCACA
* *
23817160 ATCCCC-ACCGGAGTAACTACA
1 ATCCCCTACCGGAGGAACCACA
23817181 A
1 A
23817182 CCCTTACTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.34, C:0.36, G:0.16, T:0.14
Consensus pattern (22 bp):
ATCCCCTACCGGAGGAACCACA
Found at i:23817416 original size:8 final size:9
Alignment explanation
Indices: 23817399--23817429 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
23817389 TTGAATAAGG
23817399 TAATATTTT
1 TAATATTTT
23817408 TAATATTTT
1 TAATATTTT
23817417 T-ATATTTT
1 TAATATTTT
23817425 TAATA
1 TAATA
23817430 AAATATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TAATATTTT
Found at i:23820608 original size:126 final size:126
Alignment explanation
Indices: 23820448--23820711 Score: 438
Period size: 126 Copynumber: 2.1 Consensus size: 126
23820438 AATAGGAACC
* **
23820448 ACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTAATTTTACTGACAGTGCATCCTGCT
1 ACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTCCAGTAATTTTACTGACAGTGCATCCTGCT
* * * * * *
23820513 TGAAGCGTTTTGGACACTATTTGTTTAGAAATGTCTTCTCAAAATTATTTTTTCAGATACT
66 TGAAGCGTCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAGATACT
*
23820574 ACTGTAGAAAAAGAGCATCCATGTGGGAGCTTTTTCCAGTAATTTTACTGACAGTGCATCCTGCT
1 ACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTCCAGTAATTTTACTGACAGTGCATCCTGCT
23820639 TGAAGCGTCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAGATACT
66 TGAAGCGTCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAGATACT
23820700 ACTGTAGAAAAA
1 ACTGTAGAAAAA
23820712 AATAAATAGT
Statistics
Matches: 128, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 128 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (126 bp):
ACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTCCAGTAATTTTACTGACAGTGCATCCTGCT
TGAAGCGTCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAGATACT
Found at i:23822414 original size:12 final size:12
Alignment explanation
Indices: 23822343--23822416 Score: 94
Period size: 12 Copynumber: 6.2 Consensus size: 12
23822333 TAGAAGGATA
*
23822343 TGTGTGTGTGTG
1 TGTGTGTATGTG
23822355 TGTGTGTATGTG
1 TGTGTGTATGTG
* *
23822367 TATGTGTATATG
1 TGTGTGTATGTG
*
23822379 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
23822391 TGTGTGTGTGTG
1 TGTGTGTATGTG
*
23822403 TGTGTCTATGTG
1 TGTGTGTATGTG
23822415 TG
1 TG
23822417 AAGGATTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 54 1.00
ACGTcount: A:0.07, C:0.01, G:0.42, T:0.50
Consensus pattern (12 bp):
TGTGTGTATGTG
Found at i:23822416 original size:2 final size:2
Alignment explanation
Indices: 23822343--23822407 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
23822333 TAGAAGGATA
* * * *
23822343 TG TG TG TG TG TG TG TG TG TA TG TG TA TG TG TA TA TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
23822385 TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG T
23822408 CTATGTGTGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.06, C:0.00, G:0.43, T:0.51
Consensus pattern (2 bp):
TG
Found at i:23823987 original size:63 final size:60
Alignment explanation
Indices: 23823911--23824053 Score: 178
Period size: 63 Copynumber: 2.3 Consensus size: 60
23823901 ATCGACGATC
* *
23823911 ATCAAACTATGAAAATGGATAGCTTCTGCTATCAAATTATAAAAAAAAAGGATAGCTTCAACT
1 ATCAAATTATGAAAATGGATAGCTTCAGCTATCAAATTAT---AAAAAAGGATAGCTTCAACT
* * * **
23823974 ATCAAATTATGAAAATGGATAGCTTCAGCTGTCAAATTATGAAAAGGGATAGCTTCGGCT
1 ATCAAATTATGAAAATGGATAGCTTCAGCTATCAAATTATAAAAAAGGATAGCTTCAACT
* *
23824034 ATCAAATTATGGAAAGGGAT
1 ATCAAATTATGAAAATGGAT
23824054 GGTGACGACC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
60 34 0.48
63 37 0.52
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (60 bp):
ATCAAATTATGAAAATGGATAGCTTCAGCTATCAAATTATAAAAAAGGATAGCTTCAACT
Found at i:23823996 original size:30 final size:30
Alignment explanation
Indices: 23823911--23824143 Score: 200
Period size: 30 Copynumber: 7.7 Consensus size: 30
23823901 ATCGACGATC
* * *
23823911 ATCAAACTATGAAAATGGATAGCTTCTGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* * *
23823941 ATCAAATTATAAAAAAAAAGGATAGCTTCAACT
1 ATCAAATTAT---GAAAAGGGATAGCTTCAGCT
*
23823974 ATCAAATTATGAAAATGGATAGCTTCAGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* *
23824004 GTCAAATTATGAAAAGGGATAGCTTCGGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* * * *
23824034 ATCAAATTATGGAAAGGGAT-G-GTGACGACC
1 ATCAAATTATGAAAAGGGATAGCTTCA-G-CT
** * **
23824064 ATTGAACTATGAAAAGGGATAGCTTTGGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* * * * *
23824094 GTCGAATTATAAAAAGAGATAGCTTCGGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
23824124 ATCAAATTATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
23824144 GGAGACGACC
Statistics
Matches: 161, Mismatches: 35, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
28 1 0.01
29 2 0.01
30 129 0.80
31 2 0.01
32 1 0.01
33 26 0.16
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATAGCTTCAGCT
Found at i:23824075 original size:60 final size:60
Alignment explanation
Indices: 23824005--23824245 Score: 216
Period size: 60 Copynumber: 4.0 Consensus size: 60
23823995 GCTTCAGCTG
* * * *
23824005 TCAAATTATGAAAAGGGATAGCTTCGGCTATCAAATTATGGAAAGGGATGGTGACGACCA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
** * * * * * * * * * *
23824065 TTGAACTATGAAAAGGGATAGCTTTGGCTGTCGAATTATAAAAAGAGATAGCT-TCGGCTA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGAT-GGTGACGACCA
* * *** * *
23824125 TCAAATTATGAAAAGGGATGGAGACGACCATC-AACTATGAAAAGGGATGGTGACGACCA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
* * * *
23824184 TCAAAATATGAAAAGGGGTAGCTTCGACTATCGAATCATGAAAAGGGATAGTGACAACCA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
23824244 TC
1 TC
23824246 GTGGTTTTAC
Statistics
Matches: 136, Mismatches: 42, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
58 2 0.01
59 42 0.31
60 90 0.66
61 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (60 bp):
TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
Found at i:23824109 original size:90 final size:89
Alignment explanation
Indices: 23823981--23824172 Score: 294
Period size: 90 Copynumber: 2.1 Consensus size: 89
23823971 ACTATCAAAT
* * * *
23823981 TATGAAAATGGATAGCTTCAGCTGTCAAATTATGAAAAGGGATAGCTTCGGCTATCAAATTATGG
1 TATGAAAAGGGATAGCTTCAGCTGTCAAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
* *
23824046 AAAGGGATGGTGACGACCATTGAAC
66 AAAGGGATGGAGACGACCA-TCAAC
** *
23824071 TATGAAAAGGGATAGCTTTGGCTGTCGAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
1 TATGAAAAGGGATAGCTTCAGCTGTCAAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
23824136 AAAGGGATGGAGACGACCATCAAC
66 AAAGGGATGGAGACGACCATCAAC
23824160 TATGAAAAGGGAT
1 TATGAAAAGGGAT
23824173 GGTGACGACC
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 17 0.18
90 76 0.82
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (89 bp):
TATGAAAAGGGATAGCTTCAGCTGTCAAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
AAAGGGATGGAGACGACCATCAAC
Found at i:23824169 original size:29 final size:30
Alignment explanation
Indices: 23824124--23824200 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
23824114 AGCTTCGGCT
*
23824124 ATCAAATTATGAAAAGGGATGGAGACGACC
1 ATCAAAATATGAAAAGGGATGGAGACGACC
* *
23824154 ATC-AACTATGAAAAGGGATGGTGACGACC
1 ATCAAAATATGAAAAGGGATGGAGACGACC
23824183 ATCAAAATATGAAAAGGG
1 ATCAAAATATGAAAAGGG
23824201 GTAGCTTCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 27 0.63
30 16 0.37
ACGTcount: A:0.44, C:0.13, G:0.26, T:0.17
Consensus pattern (30 bp):
ATCAAAATATGAAAAGGGATGGAGACGACC
Found at i:23825670 original size:16 final size:16
Alignment explanation
Indices: 23825649--23825679 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23825639 TTTATGAATT
23825649 ATTTTGAATCTTTTGA
1 ATTTTGAATCTTTTGA
*
23825665 ATTTTGAATTTTTTG
1 ATTTTGAATCTTTTG
23825680 TGATGTAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.13, T:0.61
Consensus pattern (16 bp):
ATTTTGAATCTTTTGA
Found at i:23827017 original size:21 final size:21
Alignment explanation
Indices: 23826993--23827054 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
23826983 CCCTTGTTGT
23826993 ACTTCGGTACCCCTGAATTAC
1 ACTTCGGTACCCCTGAATTAC
** * *
23827014 ACTTATGTGCCCCTG-TTGTAC
1 ACTTCGGTACCCCTGAAT-TAC
23827035 A--TCGGTACCCCTGAATTAC
1 ACTTCGGTACCCCTGAATTAC
23827054 A
1 A
23827055 GTTACATGCC
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
19 13 0.42
20 2 0.06
21 16 0.52
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.31
Consensus pattern (21 bp):
ACTTCGGTACCCCTGAATTAC
Found at i:23827054 original size:19 final size:20
Alignment explanation
Indices: 23826996--23827054 Score: 50
Period size: 19 Copynumber: 3.0 Consensus size: 20
23826986 TTGTTGTACT
23826996 TCGGTACCCCTGAATTACAC
1 TCGGTACCCCTGAATTACAC
** * *
23827016 TTATGTGCCCCTG-TTGTACA-
1 -TCGGTACCCCTGAAT-TACAC
23827036 TCGGTACCCCTGAATTACA
1 TCGGTACCCCTGAATTACA
23827055 GTTACATGCC
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
19 13 0.46
20 2 0.07
21 13 0.46
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (20 bp):
TCGGTACCCCTGAATTACAC
Found at i:23827104 original size:39 final size:40
Alignment explanation
Indices: 23826963--23827150 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
23826953 CTTAATTATA
* *
23826963 CCCTGAATTGCACTTACGTGCCCTTGTTGTACTTCGGTAC
1 CCCTGAATTACACTTACGTGCCCCTGTTGTACTTCGGTAC
* *
23827003 CCCTGAATTACACTTATGTGCCCCTGTTGTACATCGGTAC
1 CCCTGAATTACACTTACGTGCCCCTGTTGTACTTCGGTAC
* * *
23827043 CCCTGAATTACAGTTACATGCCCCTG-TGTACTTTGGTAC
1 CCCTGAATTACACTTACGTGCCCCTGTTGTACTTCGGTAC
* * * * * * *
23827082 CCCTAAATTTCACTTATGTGCCCCTTTTTATAATTCAGTAC
1 CCCTGAATTACACTTACGTGCCCC-TGTTGTACTTCGGTAC
* *
23827123 CCCTGAATTACACATACGTGTCCCTGTT
1 CCCTGAATTACACTTACGTGCCCCTGTT
23827151 TACACTCCGA
Statistics
Matches: 121, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
39 30 0.25
40 63 0.52
41 28 0.23
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.35
Consensus pattern (40 bp):
CCCTGAATTACACTTACGTGCCCCTGTTGTACTTCGGTAC
Found at i:23829593 original size:48 final size:48
Alignment explanation
Indices: 23829537--23829630 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
23829527 TATCTGCAAG
* *
23829537 TCTGCCAAAGGTAGTCAACAATCCGTATATCTTCTTACGTGATTATGA
1 TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTACATGATTATGA
*
23829585 TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTGCATGATTAT
1 TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTACATGATTAT
23829631 CTTTGTTATG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (48 bp):
TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTACATGATTATGA
Found at i:23830466 original size:19 final size:19
Alignment explanation
Indices: 23830438--23830474 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23830428 AGTGCATTAC
*
23830438 TAGTATTACACCAAATAAT
1 TAGTACTACACCAAATAAT
*
23830457 TAGTACTACACCACATAA
1 TAGTACTACACCAAATAA
23830475 AAGCATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (19 bp):
TAGTACTACACCAAATAAT
Found at i:23831615 original size:28 final size:27
Alignment explanation
Indices: 23831575--23831632 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 27
23831565 ATATAATCAA
23831575 TCTACATAGTTTGTAAAATTTCCTCTCT
1 TCTACATAGTTTGTAAAATTTCCTCT-T
23831603 TCTACATAGTTTGTAAAATTTCCTCTT
1 TCTACATAGTTTGTAAAATTTCCTCTT
23831630 TCT
1 TCT
23831633 TAGCAGACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (27 bp):
TCTACATAGTTTGTAAAATTTCCTCTT
Found at i:23834499 original size:39 final size:39
Alignment explanation
Indices: 23834449--23834535 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
23834439 GACTTAATGT
*
23834449 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGCGATAAATTCAGGTTTATAC
*
23834488 CTAGCAGGCCTCGTGCCGGCGATAATTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGCGATAAATTCAGGTTTATAC
23834527 CTAGCAGGC
1 CTAGCAGGC
23834536 TAATTGCAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGCGATAAATTCAGGTTTATAC
Found at i:23841058 original size:32 final size:33
Alignment explanation
Indices: 23840994--23841059 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 33
23840984 TGAAGAGGTG
23840994 AGGCCAATGGACAGAGATGAGGAGGAAAGGAGA
1 AGGCCAATGGACAGAGATGAGGAGGAAAGGAGA
* *
23841027 AGGCCAATGGA-AGGAGA-GATGAGGAAGGGAGA
1 AGGCCAATGGACA-GAGATGAGGAGGAAAGGAGA
23841059 A
1 A
23841060 CGACTACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.42, C:0.08, G:0.44, T:0.06
Consensus pattern (33 bp):
AGGCCAATGGACAGAGATGAGGAGGAAAGGAGA
Found at i:23842914 original size:42 final size:42
Alignment explanation
Indices: 23842829--23842919 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 42
23842819 CTAACTCTTT
* * * * * **
23842829 TGAGCTTCTGTTTAATCTTTATGGGTTTTTGTTCAGCTTTTA
1 TGAGCTTCCGTTCAAACGTTATGGGTTTCTGTTCAGCACTTA
*
23842871 TGAGCTTCCGTTCAAACGTTATGGGTTTCTGTTTAGCACTTA
1 TGAGCTTCCGTTCAAACGTTATGGGTTTCTGTTCAGCACTTA
*
23842913 TGTGCTT
1 TGAGCTT
23842920 TTGTTTAGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (42 bp):
TGAGCTTCCGTTCAAACGTTATGGGTTTCTGTTCAGCACTTA
Found at i:23845822 original size:13 final size:15
Alignment explanation
Indices: 23845793--23845853 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
23845783 AGAATTTGGT
23845793 AGAGAACAGAGAAGA
1 AGAGAACAGAGAAGA
23845808 AGAGAA-AGA-AAGA
1 AGAGAACAGAGAAGA
* *
23845821 AGAAGAAGAGAGAAAA
1 AG-AGAACAGAGAAGA
*
23845837 AAATGAA-AGAGAAGA
1 AGA-GAACAGAGAAGA
23845852 AG
1 AG
23845854 TGGAGGAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 6 0.16
14 7 0.18
15 18 0.47
16 7 0.18
ACGTcount: A:0.66, C:0.02, G:0.31, T:0.02
Consensus pattern (15 bp):
AGAGAACAGAGAAGA
Found at i:23851499 original size:47 final size:44
Alignment explanation
Indices: 23851380--23851593 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 44
23851370 GGAGAATTGT
* * * * * *
23851380 GTGCTAGTGTAAGACATGCCTGGAACATGCATCAGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-A-GATGA
* * *
23851426 GAGCCAGTGGAAGACCATGTCCGGGACATGGCATCGGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TA-AGATGA
* * *
23851474 GTGCCAATGTAAGACATGTTTGGGACATGCATCGGCCTCAACAATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT-AA-GATGA
* * **
23851521 -TAGCCAGTATAAGACGTGTCTGGGACATGCATCGGCTAAGATTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATGA
*
23851565 GTGCTAGTGTAAGACATGTCTGGGACATG
1 GTGCCAGTGTAAGACATGTCTGGGACATG
23851594 TACCAGCATG
Statistics
Matches: 134, Mismatches: 26, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
44 26 0.19
45 3 0.02
46 23 0.17
47 58 0.43
48 22 0.16
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATGA
Found at i:23853075 original size:20 final size:20
Alignment explanation
Indices: 23853050--23853090 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
23853040 AACCATGGCG
23853050 GATGACGTGGAAAGTAATGC
1 GATGACGTGGAAAGTAATGC
23853070 GATGACGTGGAAAGTAATGC
1 GATGACGTGGAAAGTAATGC
23853090 G
1 G
23853091 CCGGCTCCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.37, T:0.20
Consensus pattern (20 bp):
GATGACGTGGAAAGTAATGC
Found at i:23862391 original size:47 final size:46
Alignment explanation
Indices: 23862323--23862586 Score: 176
Period size: 47 Copynumber: 5.6 Consensus size: 46
23862313 TTTGTGTGCT
23862323 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
* * * * * * *
23862369 AGTGTAAGACCATGTCTGGGACAGGGCATCGGCGTAGA-GATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCAGC-CACATTATGAGAGCC
* * * ** *
23862417 AGTGTAAGACATATCTGGGATATGCATCAGCCTCAACAATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
* * * * ** * * *
23862464 AGTATAAGACGTGGCTGGGACATGGCATCGGATAAGATT-T--GTGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCAG-CCACATTATGAGAGCC
* * *
23862509 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTCCTTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-C-ACATTATGAGAGCC
*
23862557 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
23862587 GGCAACTTAT
Statistics
Matches: 157, Mismatches: 47, Indels: 24
0.69 0.21 0.11
Matches are distributed among these distances:
44 6 0.04
45 23 0.15
46 18 0.11
47 49 0.31
48 42 0.27
49 14 0.09
50 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
Found at i:23862482 original size:94 final size:92
Alignment explanation
Indices: 23862318--23862588 Score: 294
Period size: 94 Copynumber: 2.9 Consensus size: 92
23862308 GGAGATTTGT
** *
23862318 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACACAATGAGAGCCAGTATAAGACCATG
* *
23862383 TCTGGGACAGGGCATCGGCGTAGAGATGA
66 GCTGGGACAGGGCATCGG-ATA-AGATGA
* * * * *
23862412 GTGCTAGTGTAAGACATATCTGGGATATGCATCAGCCTCAACAATGATAGCCAGTATAAGA-CGT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ACAATGAGAGCCAGTATAAGACCAT
* **
23862476 GGCTGGGACATGGCATCGGATAAGATTT
65 GGCTGGGACAGGGCATCGGATAAGATGA
* * * *
23862504 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAG-CACGTCCTTATGAGAGCCAGTGTAAGACC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AC-AATGAGAGCCAGTATAAGACC
** *
23862568 ATGTTTGGGACATGGCATCGG
63 ATGGCTGGGACAGGGCATCGG
23862589 CAACTTATCC
Statistics
Matches: 148, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
91 2 0.01
92 37 0.25
93 18 0.12
94 74 0.50
95 17 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (92 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACACAATGAGAGCCAGTATAAGACCATG
GCTGGGACAGGGCATCGGATAAGATGA
Found at i:23866544 original size:43 final size:42
Alignment explanation
Indices: 23866453--23866566 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
23866443 GAGATTTACG
** *
23866453 TGTAAGACCATGTTTGGGACA-TCAACATTGTATTTGAATTCA
1 TGTAAGACCATGTTTGGGACAGT-GGCATTATATTTGAATTCA
*
23866495 TGTAAGACCCTGTTTGGGACAGTGGCATTAATATTTG-ATTGCA
1 TGTAAGACCATGTTTGGGACAGTGGCATT-ATATTTGAATT-CA
* *
23866538 TGTAAGAACAAGTTTGGGAC-GTTGGCATT
1 TGTAAGACCATGTTTGGGACAG-TGGCATT
23866567 GTACGAGCTT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTTTGGGACAGTGGCATTATATTTGAATTCA
Found at i:23872274 original size:147 final size:146
Alignment explanation
Indices: 23872004--23872283 Score: 334
Period size: 147 Copynumber: 1.9 Consensus size: 146
23871994 CACAAACGCC
* * ** *
23872004 ATCTAATGAACAATGCAAATGCCTTTTGCTATTGATTCTTATTCTATATTTCATTCCAACTTGTA
1 ATCTAATGAACAATGCAAATG-CTATTGCCATTGATTCACATTCTATATTTCATTCCAACTTATA
** * * *
23872069 TCTATACCTTATGTTACGGTTTGGGGGGAAGATGCCGAAATGAATACCGCTCTGCCATGATTGAA
65 TCTATACCTTACATTACGGATTGGGGGAAAGATGCCGAAATGAATACCGCTCTACCATGATTGAA
23872134 TTCTAATGCCTTTGTTT
130 TTCTAATGCCTTTGTTT
* *
23872151 ATCTAATGAACAATGCAAATG-TATTGCACCATTGATTCAACATTCTATGTTTCATT-CACATTT
1 ATCTAATGAACAATGCAAATGCTATTG--CCATTGATTC-ACATTCTATATTTCATTCCA-ACTT
* * * *
23872214 ATAT-TATATCTTACATTACGGATTGGGGGAAAGATGCC-AAGGTGAATACTGTTCTACCATGAT
62 ATATCTATACCTTACATTACGGATTGGGGGAAAGATGCCGAA-ATGAATACCGCTCTACCATGAT
23872277 TGAATTC
126 TGAATTC
23872284 AAACACTTTT
Statistics
Matches: 112, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
145 4 0.04
146 2 0.02
147 86 0.77
148 20 0.18
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (146 bp):
ATCTAATGAACAATGCAAATGCTATTGCCATTGATTCACATTCTATATTTCATTCCAACTTATAT
CTATACCTTACATTACGGATTGGGGGAAAGATGCCGAAATGAATACCGCTCTACCATGATTGAAT
TCTAATGCCTTTGTTT
Found at i:23873130 original size:12 final size:12
Alignment explanation
Indices: 23873097--23873131 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
23873087 TGAGACAAGA
23873097 TATTCTTTAAAT
1 TATTCTTTAAAT
*
23873109 TACTCTTTTAAAT
1 TATTC-TTTAAAT
23873122 TATTCTTTAA
1 TATTCTTTAA
23873132 GTAACATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:23873280 original size:22 final size:22
Alignment explanation
Indices: 23873234--23873280 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
23873224 ACGTAGGTTG
*
23873234 TATATTATTTTTTATAATATTA
1 TATATTATTTTTTATAATATCA
23873256 TATATTATTTTTTATTAAT-TCA
1 TATATTATTTTTTA-TAATATCA
23873278 TAT
1 TAT
23873281 TTTAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TATATTATTTTTTATAATATCA
Found at i:23873324 original size:61 final size:59
Alignment explanation
Indices: 23873252--23873408 Score: 169
Period size: 61 Copynumber: 2.6 Consensus size: 59
23873242 TTTTTATAAT
** **
23873252 ATTATATATTATTTTTTATT-AATTCATATTTTAATAAT-TGTTATATTAAGAATATTATTAA
1 ATTATATATTATTTTTTATTAAATT-ATA-TTTAATAATAAATT-TATTAA-AATAGAATTAA
*
23873313 ATTATATATTA--TTATAGTTAAATTATATTTAATAATAAATTTATTAAAATAGAATTAA
1 ATTATATATTATTTTTTA-TTAAATTATATTTAATAATAAATTTATTAAAATAGAATTAA
*
23873371 ATTATGTATTATTATTTTTATTAAATTATATTTAATAA
1 ATTATATATTA-T-TTTTTATTAAATTATATTTAATAA
23873409 AATCCTATTA
Statistics
Matches: 82, Mismatches: 7, Indels: 14
0.80 0.07 0.14
Matches are distributed among these distances:
58 19 0.23
59 19 0.23
60 7 0.09
61 33 0.40
62 4 0.05
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (59 bp):
ATTATATATTATTTTTTATTAAATTATATTTAATAATAAATTTATTAAAATAGAATTAA
Found at i:23873599 original size:16 final size:16
Alignment explanation
Indices: 23873577--23873632 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
23873567 AATTGAATTG
*
23873577 CTATTACAGTTCTATT
1 CTATTACAGCTCTATT
* *
23873593 TTATTACAACTCTATT
1 CTATTACAGCTCTATT
*
23873609 CCATTACAGCTCTATT
1 CTATTACAGCTCTATT
*
23873625 CCATTACA
1 CTATTACA
23873633 CTGAACCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.04, T:0.43
Consensus pattern (16 bp):
CTATTACAGCTCTATT
Found at i:23880531 original size:12 final size:12
Alignment explanation
Indices: 23880514--23880538 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23880504 ATTTGGTGAC
23880514 TCTTGTGTTGAA
1 TCTTGTGTTGAA
23880526 TCTTGTGTTGAA
1 TCTTGTGTTGAA
23880538 T
1 T
23880539 GTGTGGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TCTTGTGTTGAA
Found at i:23882836 original size:45 final size:45
Alignment explanation
Indices: 23882786--23882871 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
23882776 ATTGACGGTT
23882786 AAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTGGCAAGGC
1 AAGGAT-CCTATGTAAGACCATGTCAAGACATGGCATTGGCAAGGC
23882831 AAGGATCCTATGTAAGACCATGTCAAGACATGGCATTGGCA
1 AAGGATCCTATGTAAGACCATGTCAAGACATGGCATTGGCA
23882872 TTGATTAAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (45 bp):
AAGGATCCTATGTAAGACCATGTCAAGACATGGCATTGGCAAGGC
Found at i:23883083 original size:55 final size:53
Alignment explanation
Indices: 23882962--23883155 Score: 192
Period size: 55 Copynumber: 3.6 Consensus size: 53
23882952 TTGGGAAGAT
* * * * * * * *
23882962 AAGGATATCATGTAGGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATCGATGAGTTC-ATAAGGA
* *
23883016 AAGGAAATCATGTAAGACCATGTCAAGACATGACATCGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATCGATGAGTT-C-ATAAGG-A
* * * * * * *
23883072 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACATCGATGAGTTCATAAGGA
23883124 AAGGATACCATGTAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
23883156 GCAATGGTAA
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 30 0.26
54 39 0.33
55 40 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGACATCGATGAGTTCATAAGGA
Found at i:23883144 original size:53 final size:54
Alignment explanation
Indices: 23882962--23883169 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
23882952 TTGGGAAGAT
* * *
23882962 AAGGATATCATGTAGGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * * *
23883016 AAGGAAATCATGTAAGACCATGTCAAGACATGACATCGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * * *
23883072 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
23883124 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
23883170 AAAAAGGAAA
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.33
54 39 0.30
55 40 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:23888674 original size:41 final size:40
Alignment explanation
Indices: 23888525--23888710 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
23888515 TCGAATGATG
* * * *
23888525 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23888565 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23888605 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23888644 TCCGGGTTAAGTCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23888686 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23888711 AACAAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 46 0.37
41 42 0.34
42 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23888732 original size:80 final size:80
Alignment explanation
Indices: 23888578--23888733 Score: 201
Period size: 80 Copynumber: 1.9 Consensus size: 80
23888568 GGACTAAGAT
* ** *
23888578 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
23888643 ATCCGGGTTAAGTCC
66 ATCCGGGTTAAGTCC
* *
23888658 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-C
*
23888721 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
23888734 ATTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
79 2 0.03
80 41 0.62
81 23 0.35
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
ATCCGGGTTAAGTCC
Found at i:23893009 original size:54 final size:54
Alignment explanation
Indices: 23892943--23893147 Score: 200
Period size: 54 Copynumber: 3.8 Consensus size: 54
23892933 GTAAGATAAA
* *
23892943 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCATG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCATG
* * * *
23892997 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAA-GGCATG
* * * * * * *
23893053 G-TCCCATGTAAGACCATGCCATGGCATGACATTGGTGAGTT-AATAAGGCAAT-
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC-ATG
** * * *
23893105 GATACCACATAAGACCATGTCAAGACATGGTAATGATAAGTTC
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
23893148 AAAAAGGAAA
Statistics
Matches: 120, Mismatches: 26, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
52 4 0.03
53 34 0.28
54 39 0.32
55 37 0.31
56 6 0.05
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCATG
Found at i:23893069 original size:55 final size:54
Alignment explanation
Indices: 23892948--23893146 Score: 197
Period size: 55 Copynumber: 3.7 Consensus size: 54
23892938 ATAAAGATAT
* * * *
23892948 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGCATGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAGG-TAC
* *
23893002 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGGCAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAA-GGCAAGGTAC
* * * * * *
23893057 CATGTAAGACCATGCCATGGCATGACATTGGTGAGTTA--ATAAGGCAATGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAA-GGTAC
** * * *
23893110 CACATAAGACCATGTCAAGACATGGTAATGATAAGTT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTT
23893147 CAAAAAGGAA
Statistics
Matches: 118, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
52 5 0.04
53 34 0.29
54 35 0.30
55 38 0.32
56 6 0.05
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAGGTAC
Found at i:23893142 original size:108 final size:109
Alignment explanation
Indices: 23892948--23893146 Score: 276
Period size: 108 Copynumber: 1.8 Consensus size: 109
23892938 ATAAAGATAT
* * * **
23892948 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCATGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCAATAAGGCATGGAAACCACATAAGACC
*
23893013 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGGCAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACTATAAGGGCAAGGTCC
* * * *
23893057 CATGTAAGACCATGCCATGGCATGACATTGGTGAGTT-AATAAGGCAAT-GATACCACATAAGAC
1 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCAATAAGGC-ATGGAAACCACATAAGAC
*
23893120 CATGTCAAGACATGGTAATGATAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
23893147 CAAAAAGGAA
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 43 0.55
109 35 0.45
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCAATAAGGCATGGAAACCACATAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGGCAAGGTCC
Found at i:23895400 original size:21 final size:21
Alignment explanation
Indices: 23895371--23895425 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
23895361 CACTGTGCCC
*
23895371 ACACGCCCGTGTGATCTAGGG
1 ACACCCCCGTGTGATCTAGGG
* *
23895392 CCACCCCCGTGTGATTTAGGG
1 ACACCCCCGTGTGATCTAGGG
*
23895413 ACACGCCCGTGTG
1 ACACCCCCGTGTG
23895426 GTCGGGCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (21 bp):
ACACCCCCGTGTGATCTAGGG
Found at i:23899773 original size:42 final size:42
Alignment explanation
Indices: 23899666--23899774 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
23899656 TCGTTTCAAT
* * *
23899666 GCCATATCCCCGATATGGTCTTACATGAAATATCATATCGAT
1 GCCATATCCCCGATATGGTCTTATATGAAATATCATACCGAG
* * *
23899708 GCCATGTCCCCAACATGGTCTTATATGAAATCA-CATACCGAG
1 GCCATATCCCCGATATGGTCTTATATGAAAT-ATCATACCGAG
*
23899750 GCCATATCCCGGATATGGTCTTATA
1 GCCATATCCCCGATATGGTCTTATA
23899775 CGGAATCTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
GCCATATCCCCGATATGGTCTTATATGAAATATCATACCGAG
Found at i:23903037 original size:19 final size:19
Alignment explanation
Indices: 23903001--23903037 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23902991 TAAACAGGCT
* *
23903001 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
23903020 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
23903038 GAAAAAGGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:23903638 original size:12 final size:12
Alignment explanation
Indices: 23903621--23903648 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
23903611 TAAAAGATAT
23903621 TTATTATAATTA
1 TTATTATAATTA
23903633 TTATTATAATTA
1 TTATTATAATTA
23903645 TTAT
1 TTAT
23903649 CATTATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTATAATTA
Found at i:23904697 original size:13 final size:14
Alignment explanation
Indices: 23904676--23904715 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
23904666 ATTTGATTGG
23904676 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
23904689 AATATGAATTAAAT
1 AAAATGAATTAAAT
23904703 AAAAGTGAATTAA
1 AAAA-TGAATTAA
23904716 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:23905100 original size:23 final size:23
Alignment explanation
Indices: 23905068--23905241 Score: 145
Period size: 21 Copynumber: 8.0 Consensus size: 23
23905058 GGCTTTGCTG
* *
23905068 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
* * * *
23905091 ATCAGACACTTTATGTGTCATAT
1 ATCAGGCACCTCATGTGTCGTAT
* *
23905114 TTCAGGCACCTCGTGTGTC--AT
1 ATCAGGCACCTCATGTGTCGTAT
23905135 ATCAGGCACCTCATGTGTCG--T
1 ATCAGGCACCTCATGTGTCGTAT
*
23905156 ATCAGGCACCTCGTGTGTC--AT
1 ATCAGGCACCTCATGTGTCGTAT
*
23905177 ATCAGGCATCTCATGTGTCGT-T
1 ATCAGGCACCTCATGTGTCGTAT
*
23905199 -TCAGGCACCTCGTGTGTC--AT
1 ATCAGGCACCTCATGTGTCGTAT
* * *
23905219 TTCAGGCA-CTTATGTGTTGTAT
1 ATCAGGCACCTCATGTGTCGTAT
23905241 A
1 A
23905242 CTTATTAGTA
Statistics
Matches: 125, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
20 8 0.06
21 79 0.63
22 3 0.02
23 35 0.28
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (23 bp):
ATCAGGCACCTCATGTGTCGTAT
Found at i:23905170 original size:42 final size:41
Alignment explanation
Indices: 23905115--23905240 Score: 198
Period size: 42 Copynumber: 3.0 Consensus size: 41
23905105 GTGTCATATT
23905115 TCAGGCACCTCGTGTGTCATATCAGGCACCTCATGTGTCGTA
1 TCAGGCACCTCGTGTGTCATATCAGGCA-CTCATGTGTCGTA
*
23905157 TCAGGCACCTCGTGTGTCATATCAGGCATCTCATGTGTCGTT
1 TCAGGCACCTCGTGTGTCATATCAGGCA-CTCATGTGTCGTA
* * *
23905199 TCAGGCACCTCGTGTGTCATTTCAGGCACTTATGTGTTGTA
1 TCAGGCACCTCGTGTGTCATATCAGGCACTCATGTGTCGTA
23905240 T
1 T
23905241 ACTTATTAGT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 11 0.14
42 67 0.86
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.33
Consensus pattern (41 bp):
TCAGGCACCTCGTGTGTCATATCAGGCACTCATGTGTCGTA
Found at i:23905205 original size:63 final size:64
Alignment explanation
Indices: 23905068--23905227 Score: 169
Period size: 63 Copynumber: 2.5 Consensus size: 64
23905058 GGCTTTGCTG
* * * * ** *
23905068 ATCAGGCACTTTATGTGTCGTATATCAGACACTTTATGTGTCATATTTCAGGCACCTCGTGTGTC
1 ATCAGGCACCTCATGTGTC--ATATCAGGCACCTCGTGTGTCATA-TTCAGGCACCTCATGTGTC
23905133 AT
63 AT
* * *
23905135 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCATA-TCAGGCATCTCATGTGTCGT
1 ATCAGGCACCTCATGTGTCATATCAGGCACCTCGTGTGTCATATTCAGGCACCTCATGTGTCAT
* * *
23905198 TTCAGGCACCTCGTGTGTCATTTCAGGCAC
1 ATCAGGCACCTCATGTGTCATATCAGGCAC
23905228 TTATGTGTTG
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
63 43 0.54
65 19 0.24
67 17 0.22
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (64 bp):
ATCAGGCACCTCATGTGTCATATCAGGCACCTCGTGTGTCATATTCAGGCACCTCATGTGTCAT
Found at i:23905624 original size:26 final size:25
Alignment explanation
Indices: 23905567--23905625 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
23905557 AAGTATGAGA
**
23905567 AAGTGAAATTATGAATTGAAATGTG
1 AAGTGAAATTATGAATTGAAATAAG
*
23905592 AAATGAAATTGA-GATATTGAAATAAG
1 AAGTGAAATT-ATGA-ATTGAAATAAG
23905618 AAGTGAAA
1 AAGTGAAA
23905626 ATAGAATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (25 bp):
AAGTGAAATTATGAATTGAAATAAG
Found at i:23909025 original size:22 final size:22
Alignment explanation
Indices: 23908997--23909041 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
23908987 GTTCAATGTC
23908997 TTTCTCAACCCTTTCCAGGCAA
1 TTTCTCAACCCTTTCCAGGCAA
23909019 TTTCTCAACCCTTTCCAGGCAA
1 TTTCTCAACCCTTTCCAGGCAA
23909041 T
1 T
23909042 CTTTAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.36, G:0.09, T:0.33
Consensus pattern (22 bp):
TTTCTCAACCCTTTCCAGGCAA
Found at i:23915642 original size:25 final size:25
Alignment explanation
Indices: 23915614--23915662 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
23915604 CCAGAGGACC
* *
23915614 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
23915639 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
23915663 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:23919243 original size:28 final size:28
Alignment explanation
Indices: 23919199--23919298 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
23919189 AGGAAGCGTC
*
23919199 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* * *
23919227 CTGGTGGCTCTGTCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
*
23919254 CTGGTGGCTCTGCCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
* * *
23919282 CTAGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
23919299 TTATCAGTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
26 1 0.02
27 28 0.47
28 30 0.51
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:23919257 original size:27 final size:26
Alignment explanation
Indices: 23919199--23919303 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 26
23919189 AGGAAGCGTC
* *
23919199 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
23919227 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
23919254 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
23919282 CTAGTGACTCTGTCACATTATC
1 CTGGTGGCTCTGCCACATTATC
23919304 AGTTTTTGCA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.03
27 35 0.52
28 30 0.45
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:23919293 original size:55 final size:54
Alignment explanation
Indices: 23919199--23919303 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 54
23919189 AGGAAGCGTC
* *
23919199 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACAT-TATCTGTT
* *
23919254 CTGGTGGCTCTGCCAC-GATTATCTGTATCTAGTGACTCTGTCACATTATC
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTAGTGACTCTGTCACATTATC
23919304 AGTTTTTGCA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 12 0.27
55 33 0.73
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACATTATCTGTT
Found at i:23939419 original size:20 final size:20
Alignment explanation
Indices: 23939378--23939418 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23939368 ACTTTTAGAT
*
23939378 AATTCTAAAAATATATTTAA
1 AATTCTAAAAATATATTAAA
*
23939398 AATTTTAAAAAT-TATTAAA
1 AATTCTAAAAATATATTAAA
23939417 AA
1 AA
23939419 AACACTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTCTAAAAATATATTAAA
Found at i:23951220 original size:49 final size:48
Alignment explanation
Indices: 23951050--23951220 Score: 120
Period size: 49 Copynumber: 3.6 Consensus size: 48
23951040 TATACAAGCT
* * * * *
23951050 AGTGTAAGACCTGTTTGGGACATGGCGTCAG-CT-TAT-TGTG-TGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCAGCCTCTATATATGAAGTC
* * * * * * *
23951094 AGTCTAAGACATGTCTGGGGCATGGCATC-GACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCAG-C-CTCTATATATGA-AGTC
* * **
23951143 AGTGTAAGACCTACCTGTGACACAGCATCAGCCTCTATATATGAAAGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCAGCCTCTATATATG-AAGTC
23951192 AGTGTAAGACCTATCTGGGACATGGCATC
1 AGTGTAAGACCTATCTGGGACATGGCATC
23951221 GGCTTTGATA
Statistics
Matches: 92, Mismatches: 25, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
43 1 0.01
44 24 0.26
46 3 0.03
47 2 0.02
48 1 0.01
49 59 0.64
50 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTATCTGGGACATGGCATCAGCCTCTATATATGAAGTC
Found at i:23957861 original size:18 final size:18
Alignment explanation
Indices: 23957838--23957873 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23957828 ACATAAGAAA
23957838 ATAGGATGAAGTTTAATT
1 ATAGGATGAAGTTTAATT
23957856 ATAGGATGAAGTTTAATT
1 ATAGGATGAAGTTTAATT
23957874 TACGAGCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (18 bp):
ATAGGATGAAGTTTAATT
Found at i:23958490 original size:46 final size:46
Alignment explanation
Indices: 23958363--23958491 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 46
23958353 TGGTTGAGTT
*
23958363 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGGCA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTTATGGATGTAAC-A-GCA
* * *
23958409 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCTAAC-GC-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTTATGGATG-TAACAGCA
*
23958456 CCGACCTCGTTGAGTTGAGTCCGAGTTCGTTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCG-TTATGG
23958492 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
46 32 0.46
47 26 0.37
48 4 0.06
50 4 0.06
51 4 0.06
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGTTATGGATGTAACAGCA
Found at i:23961004 original size:31 final size:31
Alignment explanation
Indices: 23960961--23961024 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
23960951 AGCAGCTAAA
23960961 CCTGAAGCAAGGGCTCCATCTAGAACTTATG
1 CCTGAAGCAAGGGCTCCATCTAGAACTTATG
*
23960992 CCTGAAGTAAGGGCTCCATCTAGAACTTATG
1 CCTGAAGCAAGGGCTCCATCTAGAACTTATG
23961023 CC
1 CC
23961025 ATAAAGGCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (31 bp):
CCTGAAGCAAGGGCTCCATCTAGAACTTATG
Found at i:23975162 original size:25 final size:25
Alignment explanation
Indices: 23975094--23975217 Score: 89
Period size: 25 Copynumber: 5.0 Consensus size: 25
23975084 AGGGATTATA
*
23975094 GATTCTCAGCTCGTATGAGCTTACC
1 GATTCTAAGCTCGTATGAGCTTACC
* *
23975119 GATTGC--AGCTTGTGA-GAGCTTACT
1 GATT-CTAAGCTCGT-ATGAGCTTACC
*
23975143 GATTCTAAGCTCGTTTGAGCTTACC
1 GATTCTAAGCTCGTATGAGCTTACC
* * *
23975168 GATT-TGCAGCTCGTGA-GAGCATACT
1 GATTCT-AAGCTCGT-ATGAGCTTACC
*
23975193 GATTC-ATAGCTCGTATGAGCATACC
1 GATTCTA-AGCTCGTATGAGCTTACC
23975218 TGTACAAGAA
Statistics
Matches: 78, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
23 1 0.01
24 20 0.26
25 56 0.72
26 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (25 bp):
GATTCTAAGCTCGTATGAGCTTACC
Found at i:23975166 original size:49 final size:50
Alignment explanation
Indices: 23975094--23975217 Score: 180
Period size: 50 Copynumber: 2.5 Consensus size: 50
23975084 AGGGATTATA
* * *
23975094 GATTCTCAGCTCGTATGAGCTTACCGA-TTGCAGCTTGTGAGAGCTTACT
1 GATTCTAAGCTCGTATGAGCTTACCGATTTGCAGCTCGTGAGAGCATACT
*
23975143 GATTCTAAGCTCGTTTGAGCTTACCGATTTGCAGCTCGTGAGAGCATACT
1 GATTCTAAGCTCGTATGAGCTTACCGATTTGCAGCTCGTGAGAGCATACT
*
23975193 GATTC-ATAGCTCGTATGAGCATACC
1 GATTCTA-AGCTCGTATGAGCTTACC
23975218 TGTACAAGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
49 26 0.39
50 41 0.61
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (50 bp):
GATTCTAAGCTCGTATGAGCTTACCGATTTGCAGCTCGTGAGAGCATACT
Found at i:23976835 original size:40 final size:40
Alignment explanation
Indices: 23976653--23976875 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
23976643 TCCTCGTTCA
* * * * *
23976653 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23976692 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23976732 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23976772 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
23976812 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23976852 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23976876 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23976884 original size:41 final size:41
Alignment explanation
Indices: 23976807--23976884 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23976797 TTAGTATCTC
* * *
23976807 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23976848 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23976885 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23988514 original size:38 final size:38
Alignment explanation
Indices: 23988463--23988700 Score: 332
Period size: 38 Copynumber: 6.2 Consensus size: 38
23988453 ATTCGATGTC
** *
23988463 TATCCGGGTTAAATCCCATAGGCTTCGTGTTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
23988501 TATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
23988539 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTACTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * **
23988577 TATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
23988617 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
23988655 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
23988693 TATTCGGG
1 TATCCGGG
23988701 CCTTCGTACC
Statistics
Matches: 178, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 140 0.79
39 10 0.06
40 28 0.16
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:23988632 original size:78 final size:76
Alignment explanation
Indices: 23988463--23988689 Score: 328
Period size: 78 Copynumber: 3.0 Consensus size: 76
23988453 ATTCGATGTC
* * *
23988463 TATCCGGGTTAAATCCCATAGGCTTCGTGTTGGTATTATATCCGGGTTAAATCCCGCAAGCTTCG
1 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTATATCCGGGTTAAAACCCGCAAGCTTCG
**
23988528 TGCTGGTATTA
66 TGCTGGTAAAA
*
23988539 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTACTATATCCGGGCTTAAAGACCCGCAAGCTT
1 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTATATCCGGG-TTAAA-ACCCGCAAGCTT
23988604 CGTGCTGGTAAAA
64 CGTGCTGGTAAAA
* * * * * *
23988617 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGCAGGCCTAG
1 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTATATCCGGGTTAAAACCCGCAAGCTTCG
23988682 TGCTGGTA
66 TGCTGGTA
23988690 TTATATTCGG
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
76 61 0.45
77 9 0.07
78 66 0.49
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (76 bp):
TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTATATCCGGGTTAAAACCCGCAAGCTTCG
TGCTGGTAAAA
Found at i:23988688 original size:116 final size:116
Alignment explanation
Indices: 23988484--23988701 Score: 346
Period size: 116 Copynumber: 1.9 Consensus size: 116
23988474 AATCCCATAG
* ** *
23988484 GCTTCGTGTTGGTATTATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGTT
1 GCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGAT
* *
23988549 AAATCCCACAGGCTTCGTGCTGGTACTATATCCGGGCTTAAAGACCCGCAA
66 AAATCCCACAGGCCTAGTGCTGGTACTATATCCGGGCTTAAAGACCCGCAA
*
23988600 GCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
1 GCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGAT
* * *
23988665 AAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGGC
66 AAATCCCACAGGCCTAGTGCTGGTACTATATCCGGGC
23988702 CTTCGTACCT
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 92 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (116 bp):
GCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGAT
AAATCCCACAGGCCTAGTGCTGGTACTATATCCGGGCTTAAAGACCCGCAA
Found at i:23989427 original size:10 final size:10
Alignment explanation
Indices: 23989412--23989442 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
23989402 CGGGTCAGGG
23989412 TGTGAAAGTA
1 TGTGAAAGTA
23989422 TGTGAAAGTA
1 TGTGAAAGTA
23989432 TGTGAAAGTA
1 TGTGAAAGTA
23989442 T
1 T
23989443 TCGATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
TGTGAAAGTA
Found at i:23992798 original size:14 final size:15
Alignment explanation
Indices: 23992779--23992807 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23992769 ATAAGAACAC
23992779 AATGTT-ATACTTGA
1 AATGTTAATACTTGA
23992793 AATGTTAATACTTGA
1 AATGTTAATACTTGA
23992808 CATTACATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (15 bp):
AATGTTAATACTTGA
Found at i:23993137 original size:48 final size:48
Alignment explanation
Indices: 23993062--23993336 Score: 329
Period size: 48 Copynumber: 5.7 Consensus size: 48
23993052 GACATCTGAG
* * * * * *
23993062 ATGTACCTGTGTAAGACCATGTTTGGGACATGGAATCAGCAATAATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
23993110 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGGATCGACGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
23993158 ATGTGTCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
23993206 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * * *
23993254 GTGTGCCAGTGTAATACCATGTCTGGGATATGGTATCGACGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ** *
23993302 GTG-GATTCATGTAAGACCATGT-TGGGGACATGGCA
1 ATGTGCCT-GTGTAAGACCATGTCT-GGGACATGGCA
23993337 CTAGTACTTT
Statistics
Matches: 197, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 195 0.99
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:23993206 original size:96 final size:96
Alignment explanation
Indices: 23993024--23993336 Score: 337
Period size: 96 Copynumber: 3.3 Consensus size: 96
23993014 TGAGATTCCA
* * * * * * *
23993024 TGTAAGACCATGTTTGGGACATCGTATCGAC-AT-CTGAGATGTACCTGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGAT-ATATGTGCCTGTGTAAGACCATGTCTG
* * *
23993087 GGACATGGAATCAGCAATAATATATGTGCCTG
65 GGACATGGAATCGGCGATGATATATGTGCCTG
* *
23993119 TGTAAGACCATGTCTGGGACATGGGATCGACGATGATATATGTGTCTGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTGTGTAAGACCATGTCTGG
*
23993184 GACATGGCATCGGCGATGATATATGTGCCTG
66 GACATGGAATCGGCGATGATATATGTGCCTG
* ** * * *
23993215 TGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATGTGTGCCAGTGTAATACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTGTGTAAGACCATGTCTGG
* * * * ** *
23993280 GATATGGTATCGACGATGATATGTG-GATTCA
66 GACATGGAATCGGCGATGATATATGTGCCT-G
23993311 TGTAAGACCATGT-TGGGGACATGGCA
1 TGTAAGACCATGTCT-GGGACATGGCA
23993337 CTAGTACTTT
Statistics
Matches: 186, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
95 31 0.17
96 154 0.83
97 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTGTGTAAGACCATGTCTGG
GACATGGAATCGGCGATGATATATGTGCCTG
Found at i:23993292 original size:144 final size:144
Alignment explanation
Indices: 23993017--23993336 Score: 371
Period size: 144 Copynumber: 2.2 Consensus size: 144
23993007 TGCTAAATGA
* * * * * *
23993017 GATTCCATGTAAGACCATGTTTGGGACATCGTATCGAC-AT-CTGAGATGTACCTGTGTAAGACC
1 GATT-CATGTAAGACCATGTTGGGGACATGGCATCGGCGATGAT-ATATGTACCTGTGTAAGACC
* * *
23993080 ATGTTTGGGACATGGAATCAGCAATAATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGGA
64 ATGTCTAGGACATGGAATCAGCAATAATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGGA
23993145 TCGACGATGATATAT-
129 TCGACGATGATATATG
* *
23993160 G-TGTCTGTGTAAGACCATGTCT-GGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGAC
1 GAT-TC-ATGTAAGACCATGT-TGGGGACATGGCATCGGCGATGATATATGTACCTGTGTAAGAC
* * ** * * * * *
23993223 CATGTCTAGGACATGGCATCGGTGATGATATGTGTGCCAGTGTAATACCATGTCTGGGATATGGT
63 CATGTCTAGGACATGGAATCAGCAATAATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGG
*
23993288 ATCGACGATGATATGTG
128 ATCGACGATGATATATG
23993305 GATTCATGTAAGACCATGTTGGGGACATGGCA
1 GATTCATGTAAGACCATGTTGGGGACATGGCA
23993337 CTAGTACTTT
Statistics
Matches: 148, Mismatches: 21, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
142 2 0.01
143 29 0.20
144 112 0.76
145 4 0.03
146 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (144 bp):
GATTCATGTAAGACCATGTTGGGGACATGGCATCGGCGATGATATATGTACCTGTGTAAGACCAT
GTCTAGGACATGGAATCAGCAATAATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGGATC
GACGATGATATATG
Found at i:24001080 original size:11 final size:11
Alignment explanation
Indices: 24001046--24001102 Score: 52
Period size: 11 Copynumber: 5.6 Consensus size: 11
24001036 ATACATGATG
24001046 ATATGATATGC
1 ATATGATATGC
*
24001057 ACATGAT-TG-
1 ATATGATATGC
24001066 -TATGATATGC
1 ATATGATATGC
24001076 ATATGATATG-
1 ATATGATATGC
*
24001086 -TATGGTATGC
1 ATATGATATGC
*
24001096 ACATGAT
1 ATATGAT
24001103 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
8 5 0.14
9 10 0.28
10 2 0.06
11 19 0.53
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (11 bp):
ATATGATATGC
Found at i:24001089 original size:20 final size:19
Alignment explanation
Indices: 24001038--24001106 Score: 88
Period size: 19 Copynumber: 3.6 Consensus size: 19
24001028 GATTTGATAT
24001038 ACATGA-TGATATGATATGC
1 ACATGATTG-TATGATATGC
24001057 ACATGATTGTATGATATGC
1 ACATGATTGTATGATATGC
* *
24001076 ATATGATATGTATGGTATGC
1 ACATGAT-TGTATGATATGC
24001096 ACATGA-TGTAT
1 ACATGATTGTAT
24001107 TCATAATGCA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
18 5 0.11
19 22 0.49
20 18 0.40
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (19 bp):
ACATGATTGTATGATATGC
Found at i:24001233 original size:24 final size:25
Alignment explanation
Indices: 24001175--24001249 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
24001165 TAGTTTACCG
24001175 AAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
24001200 AAAAGGGCTTTTGCCCCAGTTTA-T
1 AAAAGGGCTTTTGCCCCAGTTTATT
*
24001224 CAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
24001247 AAA
1 AAA
24001250 GAGGCTAGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
22 3 0.06
23 13 0.28
24 8 0.17
25 23 0.49
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATT
Found at i:24001497 original size:29 final size:30
Alignment explanation
Indices: 24001464--24001525 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
24001454 CGTTTACAGT
*
24001464 AAAGGCTTCGGCCTAGT-ATATGAAATATG
1 AAAGGCTTCGGCCCAGTGATATGAAATATG
*
24001493 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTGATATGAAATATG
24001523 AAA
1 AAA
24001526 TACGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATGAAATATG
Found at i:24017439 original size:28 final size:27
Alignment explanation
Indices: 24017382--24017533 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
24017372 TAAATTGTGC
*
24017382 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24017409 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
24017437 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24017464 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
24017492 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24017519 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24017534 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24017446 original size:55 final size:55
Alignment explanation
Indices: 24017382--24017533 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
24017372 TAAATTGTGC
*
24017382 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
24017437 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
24017492 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
24017534 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:24025396 original size:55 final size:54
Alignment explanation
Indices: 24025335--24025506 Score: 213
Period size: 55 Copynumber: 3.1 Consensus size: 54
24025325 TTGGCGCTAC
* *
24025335 GTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGC-AATTGACTATGTAGCACTAA
1 GTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
*
24025390 GTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
1 GTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
* * * * *
24025445 GTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGA
1 GTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
24025500 GTGTGCG
1 GTGTGCG
24025507 GACTTAATAT
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
53 2 0.02
54 15 0.15
55 83 0.81
56 3 0.03
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (54 bp):
GTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
Found at i:24025438 original size:27 final size:27
Alignment explanation
Indices: 24025356--24025506 Score: 232
Period size: 28 Copynumber: 5.6 Consensus size: 27
24025346 TAAATTGTGC
*
24025356 AGCACTAAGTGTGC-AATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24025382 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
24025410 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24025437 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
24025465 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24025492 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24025507 GACTTAATAT
Statistics
Matches: 118, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
26 14 0.12
27 51 0.43
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24025517 original size:27 final size:27
Alignment explanation
Indices: 24025356--24025519 Score: 152
Period size: 27 Copynumber: 6.0 Consensus size: 27
24025346 TAAATTGTGC
* * *
24025356 AGCACTAAGTGTGC-AATTGACTATGT
1 AGCACTAAGTGTGCGACTTGAATATAT
* * *
24025382 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
24025410 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGACTTGAATATAT
* * *
24025437 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
24025465 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
24025492 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
24025519 A
1 A
24025520 TTCTTGAATC
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
26 14 0.11
27 56 0.45
28 55 0.44
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:24037154 original size:27 final size:26
Alignment explanation
Indices: 24037096--24037208 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 26
24037086 AGGAAGCGTC
*
24037096 CTGGTGGCTATGCCACAAATTATCTGA-T
1 CTGGTGGCTCTGCCAC--ATTATCT-ATT
* *
24037124 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTATT
24037151 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTAT-T
* * *
24037179 CTAGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTATT
24037205 CTGG
1 CTGG
24037209 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
26 6 0.08
27 36 0.50
28 30 0.42
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTATT
Found at i:24037190 original size:55 final size:54
Alignment explanation
Indices: 24037096--24037208 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
24037086 AGGAAGCGTC
* * *
24037096 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACAT-TATCTATT
* * *
24037151 CTGGTGGCTCTGCCAC-GATTATCTATATCTAGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTATGCCACAAATTATCT-GATCTAGTGACTCTGTCACATTATCTATT
24037205 CTGG
1 CTGG
24037209 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACATTATCTATT
Found at i:24046200 original size:25 final size:25
Alignment explanation
Indices: 24046172--24046220 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
24046162 CTAGAAGACC
* *
24046172 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
24046197 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
24046221 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:24061714 original size:14 final size:15
Alignment explanation
Indices: 24061690--24061721 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
24061680 CCATACGGGT
24061690 TAATAAATAAAATAA
1 TAATAAATAAAATAA
24061705 TAAT-AATAAAATAA
1 TAATAAATAAAATAA
24061719 TAA
1 TAA
24061722 AAAAATAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TAATAAATAAAATAA
Found at i:24062143 original size:65 final size:65
Alignment explanation
Indices: 24062034--24062164 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
24062024 CCCCTAGGGT
* *
24062034 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTCGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
24062099 TAAGGTTGACCTGAATGCATGTTCGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTCGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
24062164 T
1 T
24062165 GCATGGGACT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTCGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:24062475 original size:32 final size:33
Alignment explanation
Indices: 24062413--24062476 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
24062403 CTATGGGCCG
*
24062413 TACTGTTATTTGAAAATGGGCTAAGGCCCAGTT
1 TACTGTTATTTGAAAATGGGCTAAGACCCAGTT
**
24062446 TACTG-TATTCTGAAAA-GGGCTTCGACCCAGT
1 TACTGTTATT-TGAAAATGGGCTAAGACCCAGT
24062477 ACCCACTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (33 bp):
TACTGTTATTTGAAAATGGGCTAAGACCCAGTT
Found at i:24064502 original size:79 final size:81
Alignment explanation
Indices: 24064367--24064550 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
24064357 TGAATGATGT
*
24064367 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
24064431 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
24064447 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
24064509 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
24064526 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24064551 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATAA
Found at i:24064557 original size:40 final size:40
Alignment explanation
Indices: 24064366--24064550 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
24064356 TTGAATGATG
* * * *
24064366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
24064406 TCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24064446 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24064485 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24064526 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24064551 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24064572 original size:79 final size:79
Alignment explanation
Indices: 24064419--24064583 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
24064409 GGACTAAGAT
* * **
24064419 CCGAAGGCAATTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
24064484 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
24064498 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
24064561 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24064577 CCGAAGG
1 CCGAAGG
24064584 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:24069625 original size:65 final size:65
Alignment explanation
Indices: 24069521--24069648 Score: 238
Period size: 65 Copynumber: 2.0 Consensus size: 65
24069511 CCCCTAGGGT
*
24069521 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTCTTTATTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCTGA
*
24069586 TAAGGTTGACCTGGATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCT
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCT
24069649 CATGCATGGG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCTGA
Done.