Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 78 of 373
Found at i:24073058 original size:20 final size:20
Alignment explanation
Indices: 24073029--24073076 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
24073019 CGGGTTGAGG
*
24073029 ACACGAGCATGTCCCAAGCC
1 ACACGGGCATGTCCCAAGCC
24073049 ACACGGGCATGTCCCAAGCC
1 ACACGGGCATGTCCCAAGCC
24073069 ACACGGGC
1 ACACGGGC
24073077 GTGTGTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.40, G:0.25, T:0.08
Consensus pattern (20 bp):
ACACGGGCATGTCCCAAGCC
Found at i:24074057 original size:42 final size:42
Alignment explanation
Indices: 24073998--24074116 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
24073988 TGGGGTTAGT
*
24073998 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
** * *
24074040 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCAATA
** * *
24074083 TGAGATCCCATGTAAGATCATATCTGGGATATGG
1 TGAGATTACGTGTAAGACCATATCTGGGATATGG
24074117 AATTGGTATA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:24081462 original size:43 final size:43
Alignment explanation
Indices: 24081359--24081465 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 43
24081349 TAGCCAAGCT
* *
24081359 ATGGTCTTACACGA-AATCAAATAACGATGCTAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* * *
24081402 ATGGTATTACACGTAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
24081445 ATGGTCTTACACATAATCACA
1 ATGGTCTTACACATAATCACA
24081466 CCTCGTTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:24090128 original size:29 final size:30
Alignment explanation
Indices: 24090085--24090147 Score: 110
Period size: 29 Copynumber: 2.1 Consensus size: 30
24090075 ATGTCTAGAA
24090085 CAATAAAATCGATTGGGAATATAAATTCAT
1 CAATAAAATCGATTGGGAATATAAATTCAT
*
24090115 CAAT-AAATCGATTGGGAATATAATTTCAT
1 CAATAAAATCGATTGGGAATATAAATTCAT
24090144 CAAT
1 CAAT
24090148 TTTCACAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 28 0.88
30 4 0.12
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (30 bp):
CAATAAAATCGATTGGGAATATAAATTCAT
Found at i:24098648 original size:43 final size:43
Alignment explanation
Indices: 24098542--24098649 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
24098532 TAGCCCAGCT
*
24098542 ATGGTCTTACACGA-AATCAAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* ** * * *
24098585 ATGGTATTACATGTAGTCACATAATGATGCCAATGTCCTAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
24098628 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
24098650 CTCGTTAATC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:24103880 original size:20 final size:20
Alignment explanation
Indices: 24103851--24103897 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
24103841 ATTTTGATAA
*
24103851 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
24103871 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
24103891 ACATGAT
1 ACATGAT
24103898 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:24103978 original size:23 final size:23
Alignment explanation
Indices: 24103948--24104020 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
24103938 AGGAAGTGAA
24103948 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
24103971 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
24103994 AAAAGGGCTTTTGCCCCAATTATT
1 -AAAGGGCTTATGCCCCAGTTATT
24104018 AAA
1 AAA
24104021 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:24104041 original size:25 final size:24
Alignment explanation
Indices: 24103947--24104041 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
24103937 GAGGAAGTGA
24103947 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
24103971 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
24103994 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
24104018 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
24104042 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 30 0.48
25 10 0.16
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:24104270 original size:31 final size:31
Alignment explanation
Indices: 24104235--24104298 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
24104225 CGTTTACAGT
24104235 AAAGGATTCGGCCCAGTAATATGAAATATGA
1 AAAGGATTCGGCCCAGTAATATGAAATATGA
* ** * **
24104266 AAAGGCTTCTTCCTAGTGTTATGAAATATGA
1 AAAGGATTCGGCCCAGTAATATGAAATATGA
24104297 AA
1 AA
24104299 TATGAAAAGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.28
Consensus pattern (31 bp):
AAAGGATTCGGCCCAGTAATATGAAATATGA
Found at i:24111824 original size:79 final size:81
Alignment explanation
Indices: 24111688--24111870 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
24111678 TCGAATGATG
* *
24111688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
24111752 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
24111767 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
24111829 TTTGTGTGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
24111847 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24111871 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:24111886 original size:40 final size:40
Alignment explanation
Indices: 24111689--24111872 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
24111679 CGAATGATGT
* * * *
24111689 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
24111729 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
24111769 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
24111807 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24111848 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24111873 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:24111894 original size:79 final size:79
Alignment explanation
Indices: 24111741--24111905 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
24111731 GGACTAAGAT
* **
24111741 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
24111806 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
24111820 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
24111883 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24111899 CCGAAGG
1 CCGAAGG
24111906 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:24119511 original size:21 final size:22
Alignment explanation
Indices: 24119466--24119520 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
24119456 GGCGGGGCTT
*
24119466 ACATGCCCGTGTGGTCCAAGGG
1 ACATGCCCGTGTGGACCAAGGG
*
24119488 ACATGCCCGTGT-GACCATGGG
1 ACATGCCCGTGTGGACCAAGGG
* *
24119509 ACACGCTCGTGT
1 ACATGCCCGTGT
24119521 TCGACCCTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (22 bp):
ACATGCCCGTGTGGACCAAGGG
Found at i:24120881 original size:44 final size:44
Alignment explanation
Indices: 24120798--24120881 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
24120788 GAGGTATTAT
* * ** * *
24120798 ATTGGGATTACCCGTCTAGGCTAAATCCTTTTTGTAACAAGGTC
1 ATTGAGATTACCCGTCGAGGCTAAATCCCATCTGCAACAAGGTC
24120842 ATTGAGATTACCCGTCCGA-GCTAAATCCCATCTGCAACAA
1 ATTGAGATTACCCGT-CGAGGCTAAATCCCATCTGCAACAA
24120882 ATACAGGACC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
44 31 0.94
45 2 0.06
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
ATTGAGATTACCCGTCGAGGCTAAATCCCATCTGCAACAAGGTC
Found at i:24121412 original size:20 final size:20
Alignment explanation
Indices: 24121371--24121416 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
24121361 AGCACATATA
* *
24121371 TTCATAAAATTTTAGCATTT
1 TTCATTAAATTTTAGCACTT
24121391 TTCATTAAATTTTA-CAACTT
1 TTCATTAAATTTTAGC-ACTT
24121411 TTCATT
1 TTCATT
24121417 TTAGTCCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.52
Consensus pattern (20 bp):
TTCATTAAATTTTAGCACTT
Found at i:24129031 original size:17 final size:17
Alignment explanation
Indices: 24129009--24129043 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
24128999 TAATTAAAAG
24129009 GTTATTATAGTAAATTA
1 GTTATTATAGTAAATTA
24129026 GTTATTATAGTAAATTA
1 GTTATTATAGTAAATTA
24129043 G
1 G
24129044 ATAAACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (17 bp):
GTTATTATAGTAAATTA
Found at i:24133202 original size:27 final size:26
Alignment explanation
Indices: 24133120--24133243 Score: 191
Period size: 25 Copynumber: 4.8 Consensus size: 26
24133110 CCTCTTTAAT
**
24133120 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
24133145 AACTGGGGC-TAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
24133170 AACTGGGGCATAAGCCCTTTCTCAATA
1 AACTGGGGCATAAGCCCTTT-TCAATA
24133197 AACTGGGGCATAAGCCCTTTTTCAAT-
1 AACTGGGGCATAAGCCC-TTTTCAATA
24133223 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
24133244 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
25 35 0.38
26 27 0.29
27 28 0.30
28 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:24133233 original size:26 final size:27
Alignment explanation
Indices: 24133120--24133243 Score: 186
Period size: 27 Copynumber: 4.8 Consensus size: 27
24133110 CCTCTTTAAT
**
24133120 AACTGGGGCA-AAGCCC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCAATA
24133145 AACTGGGGC-TAAGCCC-TTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
*
24133170 AACTGGGGCATAAGCCCTTTCTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
24133197 AACTGGGGCATAAGCCCTTTTTCAAT-
1 AACTGGGGCATAAGCCCTTTTTCAATA
24133223 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
24133244 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
25 31 0.34
26 28 0.30
27 33 0.36
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCAATA
Found at i:24133324 original size:20 final size:20
Alignment explanation
Indices: 24133299--24133339 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
24133289 ATACATTATA
24133299 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
24133319 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
24133339 T
1 T
24133340 ATATCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:24133403 original size:25 final size:25
Alignment explanation
Indices: 24133375--24133422 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24133365 ATAAGTAAAC
* * *
24133375 CCTAGGGGTATAACAGTCATTTTTA
1 CCTAGGGGCAAAACAATCATTTTTA
24133400 CCTAGGGGCAAAACAATCATTTT
1 CCTAGGGGCAAAACAATCATTTT
24133423 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAATCATTTTTA
Found at i:24163912 original size:28 final size:28
Alignment explanation
Indices: 24163880--24163938 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
24163870 CCATAATCTT
24163880 ACTAATTTCTCAATTAAACAATACCAAA
1 ACTAATTTCTCAATTAAACAATACCAAA
*
24163908 ACTAATTTCTCAATTAAATAATACCAAA
1 ACTAATTTCTCAATTAAACAATACCAAA
24163936 ACT
1 ACT
24163939 TAGCAAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (28 bp):
ACTAATTTCTCAATTAAACAATACCAAA
Found at i:24196786 original size:20 final size:20
Alignment explanation
Indices: 24196734--24196816 Score: 87
Period size: 20 Copynumber: 4.0 Consensus size: 20
24196724 TTGTACAGGA
*
24196734 TTGCACTTCAGTGCCTTTGT
1 TTGCACTTCAGTGCCTCTGT
*
24196754 TTGCA-TTGTAGTGCCTCTGT
1 TTGCACTT-CAGTGCCTCTGT
* *
24196774 TTGCACTTCAGTGTCTCTATAT
1 TTGCACTTCAGTG-C-CTCTGT
*
24196796 TTGCACTACAGTGCCTCTGT
1 TTGCACTTCAGTGCCTCTGT
24196816 T
1 T
24196817 AGCATTTCGA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.04
20 29 0.57
21 4 0.08
22 16 0.31
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
TTGCACTTCAGTGCCTCTGT
Found at i:24203863 original size:81 final size:81
Alignment explanation
Indices: 24203726--24203911 Score: 336
Period size: 81 Copynumber: 2.3 Consensus size: 81
24203716 ACATTGACAG
* *
24203726 TACATTAGTATGAATGAATAAGATTGCAACTTCATCAAAACCAGCATCATGCTTCAAATCCTAAA
1 TACATAAGTATGAATGAATAAGATTGCAACTTCATCAAAACCAGCATCATGATTCAAATCCTAAA
*
24203791 TCTTAAATTCTATCCA
66 TCTTAAATTCTATCAA
*
24203807 TACATAAGTGTGAATGAATAAGATTGCAACTTCATCAAAACCAGCATCATGATTCAAATCCTAAA
1 TACATAAGTATGAATGAATAAGATTGCAACTTCATCAAAACCAGCATCATGATTCAAATCCTAAA
24203872 TCTTAAATTCTATCAA
66 TCTTAAATTCTATCAA
24203888 TACATAAGTATGAATGAATAAGAT
1 TACATAAGTATGAATGAATAAGAT
24203912 GATAGAATAT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (81 bp):
TACATAAGTATGAATGAATAAGATTGCAACTTCATCAAAACCAGCATCATGATTCAAATCCTAAA
TCTTAAATTCTATCAA
Found at i:24219290 original size:25 final size:25
Alignment explanation
Indices: 24219261--24219322 Score: 110
Period size: 25 Copynumber: 2.6 Consensus size: 25
24219251 GGCAAGGTGG
24219261 CGCCACTTAGGGGACAAGGAAGTGA
1 CGCCACTTAGGGGACAAGGAAGTGA
24219286 CGCCACTTAGGGGACAAGGAAGTGA
1 CGCCACTTAGGGGACAAGGAAGTGA
24219311 CGCCA--TAGGGGA
1 CGCCACTTAGGGGA
24219323 AGCAAGGGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 7 0.19
25 30 0.81
ACGTcount: A:0.31, C:0.21, G:0.37, T:0.11
Consensus pattern (25 bp):
CGCCACTTAGGGGACAAGGAAGTGA
Found at i:24222230 original size:30 final size:30
Alignment explanation
Indices: 24222196--24222256 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
24222186 TCCTTAACTC
24222196 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
24222226 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
24222256 A
1 A
24222257 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:24224253 original size:27 final size:26
Alignment explanation
Indices: 24224215--24224274 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
24224205 ATATATATAT
* *
24224215 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
24224241 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
24224268 ATATCTG
1 ATATCTG
24224275 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:24242583 original size:49 final size:51
Alignment explanation
Indices: 24242454--24242584 Score: 151
Period size: 51 Copynumber: 2.6 Consensus size: 51
24242444 TATTGTGAGG
* *
24242454 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTGATAACTTCGA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTCGA
* * * *
24242505 TCACGTGTGTAGAACTAAGTGCAGGCTACTACGTGTAC-CGAATAA-TT-GA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCG-ATAACTTCGA
* * *
24242554 TCGCATATGTAGTACTAAGTACAAGCTACTA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
24242585 TGCATACCAG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 27 0.40
50 3 0.04
51 37 0.55
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (51 bp):
TCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTCGA
Found at i:24248420 original size:17 final size:19
Alignment explanation
Indices: 24248398--24248433 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
24248388 AGAAATGGGC
24248398 CATGTGGGC-CC-CACGGG
1 CATGTGGGCTCCACACGGG
24248415 CATGTGGGCTCCACACGGG
1 CATGTGGGCTCCACACGGG
24248434 TAAACTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.14, C:0.33, G:0.39, T:0.14
Consensus pattern (19 bp):
CATGTGGGCTCCACACGGG
Found at i:24276321 original size:42 final size:42
Alignment explanation
Indices: 24276256--24276366 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 42
24276246 TACCATACCA
* * * *
24276256 ATGCCATATCCCAAATATGGTCTTACAT-AGGATCTCA-ATCG
1 ATGCCATAGCCCAGATACGGTCTTACATGAAG-TCTCATATCG
*
24276297 ATGCCAATAGCCCAGCTACGGTCTTACATGAAGTCTCATATCG
1 ATGCC-ATAGCCCAGATACGGTCTTACATGAAGTCTCATATCG
* *
24276340 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATAGCCCAGATACGGTCTTACA
24276367 CGTATCCTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 5 0.08
42 43 0.73
43 11 0.19
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGATACGGTCTTACATGAAGTCTCATATCG
Found at i:24277025 original size:30 final size:31
Alignment explanation
Indices: 24276989--24277064 Score: 122
Period size: 30 Copynumber: 2.5 Consensus size: 31
24276979 CAAATTGAAG
24276989 TCACACGGGC-AAGACACATGCCTGTGTACT
1 TCACACGGGCTAAGACACATGCCTGTGTACT
24277019 TCACAC-GGCTAAGACACATGCCTGTGTACT
1 TCACACGGGCTAAGACACATGCCTGTGTACT
*
24277049 TCACAC-GGCTGAGACA
1 TCACACGGGCTAAGACA
24277065 TACGCCCTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 3 0.07
30 41 0.93
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (31 bp):
TCACACGGGCTAAGACACATGCCTGTGTACT
Found at i:24279605 original size:12 final size:12
Alignment explanation
Indices: 24279588--24279615 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
24279578 AGATGGACAA
24279588 AATTTGGCTTTT
1 AATTTGGCTTTT
24279600 AATTTGGCTTTT
1 AATTTGGCTTTT
24279612 AATT
1 AATT
24279616 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.57
Consensus pattern (12 bp):
AATTTGGCTTTT
Found at i:24282482 original size:44 final size:43
Alignment explanation
Indices: 24282396--24282510 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 43
24282386 CTCGCACAAC
* * * * **
24282396 GCCAGCGTCCTAGACGTGGTCTTACATGTAATCACATGTCGAT
1 GCCAACGTCCCAGAAGTGGTCTTACACGTAATCACAAATCGAT
24282439 GCC-ACTGTCCCAGACAG-GGTCTTACACGTAAATCACAAATCGAT
1 GCCAAC-GTCCCAGA-AGTGGTCTTACACGT-AATCACAAATCGAT
*
24282483 GCCAACGTCCCAGATGTGGTCTTACACG
1 GCCAACGTCCCAGAAGTGGTCTTACACG
24282511 AAGCACATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.02
43 22 0.37
44 35 0.58
45 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (43 bp):
GCCAACGTCCCAGAAGTGGTCTTACACGTAATCACAAATCGAT
Found at i:24289368 original size:40 final size:40
Alignment explanation
Indices: 24289270--24289440 Score: 209
Period size: 40 Copynumber: 4.3 Consensus size: 40
24289260 TCCTCGTTCA
* * * * *
24289270 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGAACATAACCCGGATTTAATAACTCGCACG
* *
24289309 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGAACATAACCCGGATTTAATAACTCGCACG
*
24289349 AATGCCTTCGGAACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGAACATAACCCGGATTTAATAACTCGCACG
* * * * *
24289389 AATGCCTTCGGAACTTAACCCGGATTTAGTATCTCACACA
1 AATGCCTTCGGAACATAACCCGGATTTAATAACTCGCACG
*
24289429 AAGGCCTTCGGA
1 AATGCCTTCGGA
24289441 TCTTAGTCCG
Statistics
Matches: 118, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGAACATAACCCGGATTTAATAACTCGCACG
Found at i:24289371 original size:79 final size:80
Alignment explanation
Indices: 24289270--24289416 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 80
24289260 TCCTCGTTCA
* * * * *
24289270 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGAACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGAACATAACCCGGAT
24289334 TTAACAACTCGCACG
66 TTAACAACTCGCACG
* * *
24289349 AATGCCTTCGGAACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGAACTTAACCCGGAT
1 AATGCCTTCGGAACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGAACATAACCCGGAT
24289414 TTA
66 TTA
24289417 GTATCTCACA
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 33 0.56
80 26 0.44
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGAACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGAACATAACCCGGAT
TTAACAACTCGCACG
Found at i:24289452 original size:40 final size:40
Alignment explanation
Indices: 24289268--24289492 Score: 184
Period size: 40 Copynumber: 5.7 Consensus size: 40
24289258 GCTCCTCGTT
* * * * * *
24289268 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCTTCGGAACTTAACCCGGATTTAATAACTCACA
* * * * *
24289308 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAAGGCCTTCGGAACTTAACCCGGATTTAATAACTCACA
* * *
24289347 CGAATGCCTTCGGAACTTAACCCGGATTTAATAACTCGCA
1 CAAAGGCCTTCGGAACTTAACCCGGATTTAATAACTCACA
* * * *
24289387 CGAATGCCTTCGGAACTTAACCCGGATTTAGTATCTCACA
1 CAAAGGCCTTCGGAACTTAACCCGGATTTAATAACTCACA
* ** * * * *
24289427 CAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAAGGCCTTCGGAACTTAACCCGGATTTAATAACTCA-CA
* *
24289468 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGAACTTAACCCGGA
24289493 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 34 0.21
40 119 0.75
41 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAAGGCCTTCGGAACTTAACCCGGATTTAATAACTCACA
Found at i:24289476 original size:80 final size:79
Alignment explanation
Indices: 24289306--24289492 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 79
24289296 TAGTAACTCA
* * * *
24289306 CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGAACTTAACCCG
1 CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCACACAAAGGCCTTCGGAACTTAACCCG
* *
24289371 GATTTAATAACTCG
66 GATATAATAACTAG
* ** * * **
24289385 CACGAATGCCTTCGGAACTTAACCCGGATTTAGTATCTCACACAAAGGCCTTCGGATCTTAGTCC
1 CAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCACACAAAGGCCTTCGGAACTTAACCC
* *
24289450 GGATATATTCACTTAG
65 GGATATAATAAC-TAG
* *
24289466 CACAAAGCCTTCGGGACTTAGCCCGGA
1 CACAATGCCTTCGGGACTTAACCCGGA
24289493 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
79 3 0.03
80 80 0.91
81 5 0.06
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (79 bp):
CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCACACAAAGGCCTTCGGAACTTAACCCG
GATATAATAACTAG
Found at i:24300659 original size:35 final size:36
Alignment explanation
Indices: 24300619--24300695 Score: 147
Period size: 35 Copynumber: 2.2 Consensus size: 36
24300609 CTCATAGTCC
24300619 AACTTGGCATGAATATTATTAAAACCTTAATATCAT
1 AACTTGGCATGAATATTATTAAAACCTTAATATCAT
24300655 -ACTTGGCATGAATATTATTAAAACCTTAATATCAT
1 AACTTGGCATGAATATTATTAAAACCTTAATATCAT
24300690 AACTTG
1 AACTTG
24300696 CACAATCATA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 35 0.88
36 5 0.12
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.36
Consensus pattern (36 bp):
AACTTGGCATGAATATTATTAAAACCTTAATATCAT
Found at i:24300999 original size:42 final size:43
Alignment explanation
Indices: 24300880--24300999 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
24300870 CTCATAGTAC
* * ***
24300880 CATATCAATGCCATATCCCAGATATGGTCTTACA-TGGGATCT
1 CATATCGATTCCATATCCCAGATATGGTCTTACACAAAGATCT
* * * *
24300922 CATATCGATGTCAATAGCCTAGCTATGGTCTTACACAAAG-TCT
1 CATATCGAT-TCCATATCCCAGATATGGTCTTACACAAAGATCT
24300965 CATATCGATTCCATATCCCAGATATGGTCTTACAC
1 CATATCGATTCCATATCCCAGATATGGTCTTACAC
24301000 GTAATCTCAA
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 30 0.48
43 32 0.51
44 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (43 bp):
CATATCGATTCCATATCCCAGATATGGTCTTACACAAAGATCT
Found at i:24301008 original size:42 final size:42
Alignment explanation
Indices: 24300880--24301008 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
24300870 CTCATAGTAC
* * * **
24300880 CATATCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCGATTCCATATCCCAGATATGGTCTTACACGAAATCT
* * * *
24300922 CATATCGATGTCAATAGCCTAGCTATGGTCTTACAC-AAAGTCT
1 CATATCGAT-TCCATATCCCAGATATGGTCTTACACGAAA-TCT
*
24300965 CATATCGATTCCATATCCCAGATATGGTCTTACACGTAATCT
1 CATATCGATTCCATATCCCAGATATGGTCTTACACGAAATCT
24301007 CA
1 CA
24301009 AATAACCCTA
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
42 36 0.51
43 34 0.49
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCGATTCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:24314246 original size:13 final size:13
Alignment explanation
Indices: 24314228--24314274 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
24314218 ATCTAAATTC
*
24314228 TATTTTTTATTAA
1 TATTTTTTACTAA
* **
24314241 TATTTTTAAGAAA
1 TATTTTTTACTAA
24314254 TATTTTTTACTAA
1 TATTTTTTACTAA
24314267 TATTTTTT
1 TATTTTTT
24314275 TCGTGTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (13 bp):
TATTTTTTACTAA
Found at i:24322505 original size:30 final size:31
Alignment explanation
Indices: 24322468--24322534 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
24322458 AGTTTCATTT
*
24322468 CAGTCACTTAAC-TT-TAAAAAATTGACAAAA
1 CAGTCAC-TAACGTTATAAAAAAGTGACAAAA
* *
24322498 TAGTCACTAACGTTATAAAAAAGTGACAGAA
1 CAGTCACTAACGTTATAAAAAAGTGACAAAA
24322529 CAGTCA
1 CAGTCA
24322535 TTGATTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 4 0.13
30 8 0.26
31 19 0.61
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (31 bp):
CAGTCACTAACGTTATAAAAAAGTGACAAAA
Found at i:24323583 original size:50 final size:50
Alignment explanation
Indices: 24323512--24323606 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
24323502 ATGGTATCCC
* *
24323512 AATTGATTTCCTCCATAAAAACCCAAATATTTATGAAAGGGGAAAATTGA
1 AATTGATTTCCTCCATAAAAACCCAAAGATTTATGAAAGGAGAAAATTGA
*
24323562 AATTGATTTCCTCCATGAAAACCCAAAGATTTATGAAAGGAGAAA
1 AATTGATTTCCTCCATAAAAACCCAAAGATTTATGAAAGGAGAAA
24323607 TTGGAGTCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (50 bp):
AATTGATTTCCTCCATAAAAACCCAAAGATTTATGAAAGGAGAAAATTGA
Found at i:24323704 original size:3 final size:3
Alignment explanation
Indices: 24323682--24323732 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
24323672 CCATTGTTTC
* * * * *
24323682 TCT TCT CCT TCT CCT CCT TCT TCT TTT TCT TCT TCT TC- TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
24323729 TCT T
1 TCT T
24323733 GATGCTAACT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:24324207 original size:42 final size:42
Alignment explanation
Indices: 24324160--24324248 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
24324150 TAATAATAAT
24324160 ATCACTATAATAAATCTATCAATTAATAATAATTTTTTTTGA
1 ATCACTATAATAAATCTATCAATTAATAATAATTTTTTTTGA
24324202 ATCACTATAATAAATCTATCAATTAATAATAATTTTTTTTGA
1 ATCACTATAATAAATCTATCAATTAATAATAATTTTTTTTGA
24324244 ATCAC
1 ATCAC
24324249 GCTTAAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (42 bp):
ATCACTATAATAAATCTATCAATTAATAATAATTTTTTTTGA
Found at i:24328436 original size:15 final size:15
Alignment explanation
Indices: 24328416--24328447 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
24328406 ATAATTAGTG
24328416 CTAAAGAACCTTTTA
1 CTAAAGAACCTTTTA
24328431 CTAAAGAACCTTTTA
1 CTAAAGAACCTTTTA
24328446 CT
1 CT
24328448 TTAGCCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (15 bp):
CTAAAGAACCTTTTA
Found at i:24329833 original size:15 final size:15
Alignment explanation
Indices: 24329814--24329854 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
24329804 ATGACAGAGG
24329814 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
24329829 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
24329844 AATCCAAGATA
1 AATCCAAGATA
24329855 CCATATCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:24331825 original size:37 final size:38
Alignment explanation
Indices: 24331759--24331847 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 38
24331749 GCTTACAAGC
*
24331759 CAAAATCATTATAAGCCACATCTTATGGCTGCAT-ACAA
1 CAAAATCATTATAAGCCACATCTTATGGCT-AATCACAA
24331797 C-AAATCATTATAAGCCA-ATACATT-TGGCTAATCACAA
1 CAAAATCATTATAAGCCACAT-C-TTATGGCTAATCACAA
24331834 CAAAATCGATTATA
1 CAAAATC-ATTATA
24331848 GAAAAAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
36 4 0.09
37 27 0.60
38 8 0.18
39 6 0.13
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (38 bp):
CAAAATCATTATAAGCCACATCTTATGGCTAATCACAA
Found at i:24336422 original size:6 final size:6
Alignment explanation
Indices: 24336411--24336441 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
24336401 AGTCATTTGG
24336411 AAATGA AAATGA AAATGA AAATGA AAATGA A
1 AAATGA AAATGA AAATGA AAATGA AAATGA A
24336442 GATGGAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:24336450 original size:18 final size:18
Alignment explanation
Indices: 24336408--24336450 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
24336398 TGGAGTCATT
24336408 TGGAAATGAAAATGAAAA
1 TGGAAATGAAAATGAAAA
* *
24336426 TGAAAATGAAAATGAAGA
1 TGGAAATGAAAATGAAAA
24336444 TGGAAAT
1 TGGAAAT
24336451 TTGCAATCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (18 bp):
TGGAAATGAAAATGAAAA
Found at i:24336644 original size:26 final size:26
Alignment explanation
Indices: 24336611--24336666 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
24336601 TATTAGGGCC
*
24336611 AAATCGTCAAAATTTTACTATGGATA
1 AAATCGTCAAAATTTTACTAAGGATA
*
24336637 AAATCGTCAAAATTTTACTAAGGGTA
1 AAATCGTCAAAATTTTACTAAGGATA
24336663 AAAT
1 AAAT
24336667 AGAGATAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATCGTCAAAATTTTACTAAGGATA
Found at i:24345794 original size:21 final size:18
Alignment explanation
Indices: 24345760--24345805 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 18
24345750 TAGTACATAT
*
24345760 TATTTTTGTATTATCTATTA
1 TATTTTTATATTAT-TA-TA
24345780 TATTATTTATATTATTATA
1 TATT-TTTATATTATTATA
24345799 TATTTTT
1 TATTTTT
24345806 GAAATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 6 0.25
21 9 0.38
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TATTTTTATATTATTATA
Found at i:24345819 original size:19 final size:20
Alignment explanation
Indices: 24345769--24345820 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
24345759 TTATTTTTGT
*
24345769 ATTATCTATTATATTATTTAT
1 ATTAT-TATTATATTATTTAA
24345790 ATTATTA-TATATT-TTTGAA
1 ATTATTATTATATTATTT-AA
24345809 ATT-TTATTATAT
1 ATTATTATTATAT
24345821 ATAATATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 6 0.21
19 15 0.54
20 2 0.07
21 5 0.18
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTATTATTATATTATTTAA
Found at i:24346069 original size:20 final size:18
Alignment explanation
Indices: 24346020--24346082 Score: 76
Period size: 20 Copynumber: 3.5 Consensus size: 18
24346010 TTTATTATAC
*
24346020 ATTATATACATTT-TATT
1 ATTATATATATTTATATT
*
24346037 A-TATATATTTTTATATT
1 ATTATATATATTTATATT
24346054 ACTTATCATATATTTATATT
1 A-TTAT-ATATATTTATATT
24346074 ATTATATAT
1 ATTATATAT
24346083 TATGGTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
16 9 0.23
17 6 0.15
18 4 0.10
19 7 0.18
20 13 0.33
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATATATATTTATATT
Found at i:24352667 original size:14 final size:13
Alignment explanation
Indices: 24352648--24352720 Score: 83
Period size: 13 Copynumber: 5.5 Consensus size: 13
24352638 CTTCTATTTC
**
24352648 AAAAAAAAAAGGG
1 AAAAAAAAAAAAG
*
24352661 AAAAAAAGAAAAG
1 AAAAAAAAAAAAG
24352674 AAAAAGAAAAAAAG
1 AAAAA-AAAAAAAG
* *
24352688 AAAAAGAAAAGAG
1 AAAAAAAAAAAAG
24352701 AAAAAAGAAAAAAG
1 AAAAAA-AAAAAAG
24352715 AAAAAA
1 AAAAAA
24352721 GGAGAGGCCA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
13 26 0.52
14 24 0.48
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:24352672 original size:6 final size:6
Alignment explanation
Indices: 24352663--24352719 Score: 62
Period size: 6 Copynumber: 8.8 Consensus size: 6
24352653 AAAAAGGGAA
24352663 AAAAAG -AAAAG AAAAAG AAAAAAAG AAAAAG AAAAGAG AAAAAAG AAAAAAG
1 AAAAAG AAAAAG AAAAAG --AAAAAG AAAAAG AAAA-AG -AAAAAG -AAAAAG
24352715 AAAAA
1 AAAAA
24352720 AGGAGAGGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.11
6 20 0.43
7 11 0.24
8 10 0.22
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:24352672 original size:7 final size:7
Alignment explanation
Indices: 24352660--24352721 Score: 76
Period size: 7 Copynumber: 9.1 Consensus size: 7
24352650 AAAAAAAAGG
24352660 GAAAAAA
1 GAAAAAA
*
24352667 -AGAAAA
1 GAAAAAA
24352673 G-AAAAA
1 GAAAAAA
24352679 GAAAAAA
1 GAAAAAA
24352686 -AGAAAAA
1 GA-AAAAA
*
24352693 GAAAAGA
1 GAAAAAA
24352700 GAAAAAA
1 GAAAAAA
24352707 GAAAAAA
1 GAAAAAA
24352714 GAAAAAA
1 GAAAAAA
24352721 G
1 G
24352722 GAGAGGCCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
6 11 0.23
7 35 0.74
8 1 0.02
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:24352672 original size:21 final size:20
Alignment explanation
Indices: 24352648--24352718 Score: 83
Period size: 19 Copynumber: 3.5 Consensus size: 20
24352638 CTTCTATTTC
24352648 AAAAAAAAAAGGGAAAAAAAG
1 AAAAAAAAAA-GGAAAAAAAG
*
24352669 AAAAGAAAAA-GAAAAAAAG
1 AAAAAAAAAAGGAAAAAAAG
*
24352688 AAAAAGAAAA-GAGAAAAAAG
1 AAAAAAAAAAGGA-AAAAAAG
24352708 AAAAAAGAAAA
1 AAAAAA-AAAA
24352719 AAGGAGAGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
19 19 0.43
20 12 0.27
21 13 0.30
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAGGAAAAAAAG
Found at i:24352677 original size:20 final size:20
Alignment explanation
Indices: 24352649--24352718 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
24352639 TTCTATTTCA
* *
24352649 AAAAAAAAAGGGAAAAAAAG
1 AAAAGAAAAGAGAAAAAAAG
24352669 AAAAGAAAA-AGAAAAAAAG
1 AAAAGAAAAGAGAAAAAAAG
*
24352688 AAAAAGAAAAGAGAAAAAAGAA
1 -AAAAGAAAAGAGAAAAAA-AG
24352710 AAAAGAAAA
1 AAAAGAAAA
24352719 AAGGAGAGGC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
19 9 0.20
20 17 0.39
21 17 0.39
22 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAGAAAAGAGAAAAAAAG
Found at i:24352684 original size:27 final size:26
Alignment explanation
Indices: 24352660--24352720 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
24352650 AAAAAAAAGG
24352660 GAAAAAAAGAAAAG-AAAAAGAAAAAAA
1 GAAAAAAA-AAAAGAAAAAAG-AAAAAA
*
24352687 GAAAAAGAAAAGAGAAAAAAGAAAAAA
1 GAAAAA-AAAAAAGAAAAAAGAAAAAA
24352714 GAAAAAA
1 GAAAAAA
24352721 GGAGAGGCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 1 0.03
27 22 0.71
28 8 0.26
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (26 bp):
GAAAAAAAAAAAGAAAAAAGAAAAAA
Found at i:24354033 original size:41 final size:41
Alignment explanation
Indices: 24353987--24354123 Score: 104
Period size: 41 Copynumber: 3.2 Consensus size: 41
24353977 AAGACATAGC
24353987 TGATTTGGCTTTCACGTGTTTACGTCGAAGCAAATCTAAGA
1 TGATTTGGCTTTCACGTGTTTACGTCGAAGCAAATCTAAGA
* * * *
24354028 TGATTTGGCGTCTCTGTAC-TGTTAGGGAGCAGATCGAAG-ACA--T-AGC
1 TGATTTGGC-T-T-T-CACGTGTT---TA-C-G-TCGAAGCAAATCTAAGA
*
24354074 TGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
1 TGATTTGGCTTTCACGTGTTTACGTCGAAGCAAATCTAAGA
24354115 TGATTTGGC
1 TGATTTGGC
24354124 GCCTCTGTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 30
0.65 0.08 0.27
Matches are distributed among these distances:
37 5 0.07
38 3 0.04
39 1 0.01
40 2 0.03
41 20 0.28
42 3 0.04
43 6 0.08
44 6 0.08
45 3 0.04
46 11 0.15
47 2 0.03
48 1 0.01
49 3 0.04
50 6 0.08
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (41 bp):
TGATTTGGCTTTCACGTGTTTACGTCGAAGCAAATCTAAGA
Found at i:24354072 original size:87 final size:87
Alignment explanation
Indices: 24353967--24354593 Score: 928
Period size: 87 Copynumber: 7.2 Consensus size: 87
24353957 TGTTTACAAG
* *
24353967 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTCGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
* *
24354032 TTGGCGTCTCTGTACTGTTAGG
66 TTGGCGTCTCTGTACTGTCAGA
24354054 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
*
24354119 TTGGCGCCTCTGTACTGTCAGA
66 TTGGCGTCTCTGTACTGTCAGA
* * *
24354141 GAGTAGATCAAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTGAAG-----C-AA-ATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
24354199 TTGGCGTCTCTGTACTGTCAGA
66 TTGGCGTCTCTGTACTGTCAGA
*
24354221 GAGCAGATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
*
24354286 TTGGCGTCTCTGTACTATCAGA
66 TTGGCGTCTCTGTACTGTCAGA
* *
24354308 GAGCAGATCAAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
*
24354373 TTGGTGTCTCTGTACTGTCAGA
66 TTGGCGTCTCTGTACTGTCAGA
* *
24354395 GAGCAGATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTATGTTGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
*
24354460 TTGGCGTCTCTGTACTGTTAGA
66 TTGGCGTCTCTGTACTGTCAGA
* * * * *
24354482 GAACAGATTGAAGACATAGCTGATTTGGGCTTTCATGTGTTTACGTTGAAGCAAATCGAAGAAGC
1 GAGCAGATCGAAGACATAGCTGATTT-GGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATG-
* *
24354547 AAATTTGGCGTCTCTGTATATGT-AGG
64 --ATTTGGCGTCTCTGTA-CTGTCAGA
* *
24354573 GAGCATATCGAAGATATAGCT
1 GAGCAGATCGAAGACATAGCT
24354594 TGGTGTTCCT
Statistics
Matches: 492, Mismatches: 36, Indels: 20
0.90 0.07 0.04
Matches are distributed among these distances:
80 74 0.15
81 2 0.00
82 1 0.00
85 1 0.00
86 2 0.00
87 341 0.69
88 33 0.07
91 35 0.07
92 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
TTGGCGTCTCTGTACTGTCAGA
Found at i:24354389 original size:254 final size:257
Alignment explanation
Indices: 24353967--24354564 Score: 932
Period size: 254 Copynumber: 2.3 Consensus size: 257
24353957 TGTTTACAAG
* *
24353967 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTCGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
* * * * *
24354032 TTGGCGTCTCTGTACTGTTAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTAC
66 TTGGCGTCTCTGTACTATCAGAGAGCAGATCAAAGACATAGCTAATTTGGCTTTCACGTGTTTAC
*
24354097 GTTGAAGCAAATCTAAGATGATTTGGCGCCTCTGTACTGTCAGAGAGTAGATCAAAGACATAGTT
131 GTTGAAGCAAATCTAAGATGATTTGGCGCCTCTGTACTGTCAGAGAGCAGATCAAAGACATAGTT
24354162 GATTTGGCTTTCACGTGTTTACGTTGAAG-C-AA-ATGATTTGGCGTCTCTGTACTGTCAGA
196 GATTTGGCTTTCACGTGTTTACGTTGAAGACTAAGATGATTTGGCGTCTCTGTACTGTCAGA
*
24354221 GAGCAGATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
24354286 TTGGCGTCTCTGTACTATCAGAGAGCAGATCAAAGACATAGCTAATTTGGCTTTCACGTGTTTAC
66 TTGGCGTCTCTGTACTATCAGAGAGCAGATCAAAGACATAGCTAATTTGGCTTTCACGTGTTTAC
* * *
24354351 GTTGAAGCAAATCTAAGATGATTTGGTGTCTCTGTACTGTCAGAGAGCAGATCGAAGACATAGTT
131 GTTGAAGCAAATCTAAGATGATTTGGCGCCTCTGTACTGTCAGAGAGCAGATCAAAGACATAGTT
* *
24354416 GATTTGGCTTTCACGTGTTTATGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTACTGTTAG
196 GATTTGGCTTTCACGTGTTTACGTTGAAG---A-CTAAGATGATTTGGCGTCTCTGTACTGTCAG
24354481 A
257 A
* * * * *
24354482 GAACAGATTGAAGACATAGCTGATTTGGGCTTTCATGTGTTTACGTTGAAGCAAATCGAAGAAGC
1 GAGCAGATCGAAGACATAGCTGATTT-GGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATG-
24354547 AAATTTGGCGTCTCTGTA
64 --ATTTGGCGTCTCTGTA
24354565 TATGTAGGGA
Statistics
Matches: 313, Mismatches: 20, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
254 211 0.67
259 1 0.00
260 2 0.01
261 49 0.16
262 34 0.11
265 16 0.05
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (257 bp):
GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
TTGGCGTCTCTGTACTATCAGAGAGCAGATCAAAGACATAGCTAATTTGGCTTTCACGTGTTTAC
GTTGAAGCAAATCTAAGATGATTTGGCGCCTCTGTACTGTCAGAGAGCAGATCAAAGACATAGTT
GATTTGGCTTTCACGTGTTTACGTTGAAGACTAAGATGATTTGGCGTCTCTGTACTGTCAGA
Found at i:24357964 original size:25 final size:23
Alignment explanation
Indices: 24357909--24357964 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
24357899 TTTCGGCTAG
24357909 AGAAGAAAAGAAAGGAGAAAAGA
1 AGAAGAAAAGAAAGGAGAAAAGA
* * *
24357932 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGAAAGGAGAAAAGA
24357957 AGGAAGAA
1 A-GAAGAA
24357965 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.08
24 4 0.15
25 19 0.73
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (23 bp):
AGAAGAAAAGAAAGGAGAAAAGA
Found at i:24359270 original size:19 final size:20
Alignment explanation
Indices: 24359220--24359271 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
24359210 TTATTTTTGT
*
24359220 ATTATCTATTATATTATTTAC
1 ATTAT-TATTATATTATTTAA
24359241 ATTATTA-TATATT-TTTGAA
1 ATTATTATTATATTATTT-AA
24359260 ATT-TTATTATAT
1 ATTATTATTATAT
24359272 ATAATATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 6 0.21
19 15 0.54
20 2 0.07
21 5 0.18
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTATTATTATATTATTTAA
Found at i:24359427 original size:17 final size:17
Alignment explanation
Indices: 24359407--24359439 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24359397 ATATGACAGT
24359407 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
24359424 ATATTTTATTATATAT
1 ATATTTTATTACATAT
24359440 TATTCTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:24359520 original size:20 final size:18
Alignment explanation
Indices: 24359471--24359533 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 18
24359461 TTTATTATAC
**
24359471 ATTATATACATTT-TATT
1 ATTATATATGTTTATATT
*
24359488 A-TATATATTTTTATATT
1 ATTATATATGTTTATATT
24359505 ACTTATCATATGTTTATATT
1 A-TTAT-ATATGTTTATATT
24359525 ATTATATAT
1 ATTATATAT
24359534 TGTGGTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
16 9 0.23
17 6 0.15
18 4 0.10
19 7 0.18
20 13 0.33
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTATATATGTTTATATT
Found at i:24367273 original size:22 final size:21
Alignment explanation
Indices: 24367242--24367306 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
24367232 AACTCATGAG
*
24367242 TTATGGTCTGAGTTCATGATA
1 TTATGATCTGAGTTCATGATA
** *
24367263 TCTATGATCTGAACTCATTGA-G
1 T-TATGATCTGAGTTCA-TGATA
*
24367285 TTGTGATCTGAGTTCATGATA
1 TTATGATCTGAGTTCATGATA
24367306 T
1 T
24367307 ATGTGACACA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.09
21 14 0.42
22 13 0.39
23 3 0.09
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.42
Consensus pattern (21 bp):
TTATGATCTGAGTTCATGATA
Found at i:24367297 original size:43 final size:42
Alignment explanation
Indices: 24367226--24367306 Score: 135
Period size: 43 Copynumber: 1.9 Consensus size: 42
24367216 GGAATTATGC
*
24367226 GATCTGAACTCATGAGTTATGGTCTGAGTTCATGATATCTAT
1 GATCTGAACTCATGAGTTATGATCTGAGTTCATGATATCTAT
*
24367268 GATCTGAACTCATTGAGTTGTGATCTGAGTTCATGATAT
1 GATCTGAACTCA-TGAGTTATGATCTGAGTTCATGATAT
24367307 ATGTGACACA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 12 0.33
43 24 0.67
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (42 bp):
GATCTGAACTCATGAGTTATGATCTGAGTTCATGATATCTAT
Found at i:24374834 original size:42 final size:42
Alignment explanation
Indices: 24374751--24374841 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
24374741 CCCTAGGAAT
* *
24374751 TATGCGATCTGAACTCATGAGTTGTGGTCTGAGTTCATGATA
1 TATGTGATCTGAACTCATGAGTTGTGCTCTGAGTTCATGATA
24374793 TATGTGATCTGAACTCATTGAGTTGTGCTCTGAGTTC-TGATA
1 TATGTGATCTGAACTCA-TGAGTTGTGCTCTGAGTTCATGATA
24374835 TATGTGA
1 TATGTGA
24374842 CACATGTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 28 0.61
43 18 0.39
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.38
Consensus pattern (42 bp):
TATGTGATCTGAACTCATGAGTTGTGCTCTGAGTTCATGATA
Found at i:24378229 original size:72 final size:72
Alignment explanation
Indices: 24378141--24378286 Score: 181
Period size: 73 Copynumber: 2.0 Consensus size: 72
24378131 GCAAGCATAT
* *
24378141 CATGTTAATGCTTT-GGGGTCCAGG-TGCTAACTTTGTGTATAAACCCGTGAGTAGCTC-AATGA
1 CATGATAATGCTTTGGGGGT-CAGGATGCTAACTTTGTGTACAAACCCGTGAGTAGCTCAAAT--
24378203 GCGGGCATTA
63 GCGGGCATTA
* * * * *
24378213 CATGATAATGCTTTGGGGGTCTGGATGCTGACTTTGTGTACAGACTCGTGAGTAGTTCAAATGCG
1 CATGATAATGCTTTGGGGGTCAGGATGCTAACTTTGTGTACAAACCCGTGAGTAGCTCAAATGCG
24378278 GGCATTA
66 GGCATTA
24378285 CA
1 CA
24378287 AAATATGTGG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
72 28 0.44
73 33 0.52
74 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (72 bp):
CATGATAATGCTTTGGGGGTCAGGATGCTAACTTTGTGTACAAACCCGTGAGTAGCTCAAATGCG
GGCATTA
Found at i:24383505 original size:50 final size:50
Alignment explanation
Indices: 24383430--24383807 Score: 347
Period size: 50 Copynumber: 7.5 Consensus size: 50
24383420 GTGAGTCACG
24383430 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* ** * * * * * *
24383480 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCGCA
* * * * *
24383531 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGT--CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* *
24383579 TGTGCTTAGTACTAAGTGCAGGCTAATACGTGTACCAGATTGATAGGTCGTA
1 TGTG--TAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* * * **
24383631 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TT-A-ACTTCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG--CA
* * * ** * * *
24383680 TGTGTGTAGTACTAAGTGCAGGATACTATGTATTTCAGATGGTTAAGT-GACA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG-CA
* *
24383732 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
24383782 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
24383808 TACATACCAG
Statistics
Matches: 255, Mismatches: 58, Indels: 30
0.74 0.17 0.09
Matches are distributed among these distances:
47 4 0.02
48 6 0.02
49 6 0.02
50 161 0.63
51 66 0.26
52 9 0.04
53 1 0.00
54 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
Found at i:24383697 original size:151 final size:150
Alignment explanation
Indices: 24383430--24383815 Score: 630
Period size: 151 Copynumber: 2.6 Consensus size: 150
24383420 GTGAGTCACG
24383430 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
* *
24383495 GCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGT
66 GCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACTACGT
*
24383560 GTATCAGATGGTTAAGT-CA
131 ATATCAGATGGTTAAGTACA
* *
24383579 TGTGCTTAGTACTAAGTGCAGGCTAATACGTGTACCAGATTGATAGGTCGTATGTGTAGTACTAA
1 TGTG--TAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAA
* * *
24383644 GTGCAGGCTACTATGCGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGCAGGATACTAT
64 GTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACTAC
*
24383709 GTATTTCAGATGGTTAAGTGACA
129 GTATATCAGATGGTTAAGT-ACA
* *
24383732 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
*
24383797 GCAGGCTACTATACATACC
66 GCAGGCTACTATGCATACC
24383816 AGAGAGCTTT
Statistics
Matches: 218, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
149 4 0.02
151 208 0.95
153 6 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACTACGT
ATATCAGATGGTTAAGTACA
Found at i:24383719 original size:101 final size:101
Alignment explanation
Indices: 24383576--24383757 Score: 233
Period size: 101 Copynumber: 1.8 Consensus size: 101
24383566 GATGGTTAAG
* * * * *
24383576 TCATGTGCTTAGTACTAAGTGCAGGCTAATACGTGTACCAGATTGATAGGTCG-TATGTGTAGTA
1 TCATGTGCTTAGTACTAAGTGCAGGATAATACGTATACCAGATGGATAAGT-GACATGTGTAGTA
24383640 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
65 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* * ** *
24383677 TCATGTG-TGTAGTACTAAGTGCAGGATACTATGTATTTCAGATGGTTAAGTGACATGTGTAGTA
1 TCATGTGCT-TAGTACTAAGTGCAGGATAATACGTATACCAGATGGATAAGTGACATGTGTAGTA
*
24383741 CTAAGTGTAGGCTACTA
65 CTAAGTGCAGGCTACTA
24383758 CGTGTACTAG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
100 2 0.03
101 66 0.97
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (101 bp):
TCATGTGCTTAGTACTAAGTGCAGGATAATACGTATACCAGATGGATAAGTGACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:24384039 original size:16 final size:16
Alignment explanation
Indices: 24384018--24384049 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24384008 AGAATGGAAT
24384018 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
24384034 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
24384050 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:24384154 original size:18 final size:18
Alignment explanation
Indices: 24384131--24384173 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
24384121 GTTTTCTCAT
24384131 AAAAGAAACAGTTAAGGC
1 AAAAGAAACAGTTAAGGC
24384149 AAAAGAAACAGTTAAGGC
1 AAAAGAAACAGTTAAGGC
24384167 AAAAGAA
1 AAAAGAA
24384174 TCTCATATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.21, T:0.09
Consensus pattern (18 bp):
AAAAGAAACAGTTAAGGC
Found at i:24389520 original size:27 final size:26
Alignment explanation
Indices: 24389489--24389577 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
24389479 TAGCGACGGT
*
24389489 AATATAATCAGCACATAGCCATGGGTA
1 AATATGATCAGCACATAGCCAT-GGTA
* * *
24389516 AATATGATC-GACACAAAGTCATCGATA
1 AATATGATCAG-CACATAGCCAT-GGTA
24389543 AATATGA-CTAGCACATAGCCACTGGTA
1 AATATGATC-AGCACATAGCCA-TGGTA
24389570 AATATGAT
1 AATATGAT
24389578 TTGCAGAAAG
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
26 2 0.04
27 45 0.92
28 2 0.04
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.24
Consensus pattern (26 bp):
AATATGATCAGCACATAGCCATGGTA
Found at i:24391358 original size:24 final size:24
Alignment explanation
Indices: 24391331--24391396 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
24391321 TCCTTAAATC
* *
24391331 TCTCCATAAATCACTCCTTGATTT
1 TCTCCATAAATCACTCCATGATAT
*
24391355 TCTCC-TAATATCTCTCCATGATAT
1 TCTCCATAA-ATCACTCCATGATAT
* *
24391379 ACTCTATAAATCACTCCA
1 TCTCCATAAATCACTCCA
24391397 ACCTCCCATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.09
24 28 0.82
25 3 0.09
ACGTcount: A:0.29, C:0.30, G:0.03, T:0.38
Consensus pattern (24 bp):
TCTCCATAAATCACTCCATGATAT
Found at i:24393191 original size:21 final size:20
Alignment explanation
Indices: 24393167--24393220 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
24393157 TTAAACATCT
24393167 TACATCATCATATTATCATTA
1 TACATCATCATATTATC-TTA
24393188 TACATCATCATATTATCTTA
1 TACATCATCATATTATCTTA
* *
24393208 -CCATAATCATATT
1 TACATCATCATATT
24393221 TACTACATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.35
20 3 0.10
21 17 0.55
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (20 bp):
TACATCATCATATTATCTTA
Found at i:24395246 original size:17 final size:17
Alignment explanation
Indices: 24395224--24395256 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24395214 TGGTATTGTA
24395224 TGAATTAAATTAATTTT
1 TGAATTAAATTAATTTT
*
24395241 TGAATTAATTTAATTT
1 TGAATTAAATTAATTT
24395257 GATAGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TGAATTAAATTAATTTT
Found at i:24397094 original size:43 final size:43
Alignment explanation
Indices: 24397033--24397163 Score: 226
Period size: 43 Copynumber: 3.0 Consensus size: 43
24397023 GTAAAATGTG
24397033 TGTAAGTGTGTGATTTAATGCAAATTGTGGACTGCTATAGTTA
1 TGTAAGTGTGTGATTTAATGCAAATTGTGGACTGCTATAGTTA
*
24397076 TGTAAGTGTGTGATTTAATGCAAATTGTGGATTGCTATAGTTA
1 TGTAAGTGTGTGATTTAATGCAAATTGTGGACTGCTATAGTTA
* * *
24397119 TGTAAGTGTGTGATTTAATACAAATTGTGGACTGTTATATTTA
1 TGTAAGTGTGTGATTTAATGCAAATTGTGGACTGCTATAGTTA
24397162 TG
1 TG
24397164 AAAATGGTTT
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.28, C:0.05, G:0.24, T:0.42
Consensus pattern (43 bp):
TGTAAGTGTGTGATTTAATGCAAATTGTGGACTGCTATAGTTA
Found at i:24397734 original size:50 final size:50
Alignment explanation
Indices: 24397615--24398059 Score: 373
Period size: 50 Copynumber: 8.8 Consensus size: 50
24397605 ATTGTGAGAA
* * * *
24397615 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
24397667 CACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * * * *
24397717 CGCATGTATAGTACTAAGGGCAGGATACTATGCGTACTC-GATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGT
* * * * * *
24397768 CACGTGTGTAATACTAAGTGCAGGCTCCTACGTGTATCAAATGGTTCA-GT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-AGGT
* * * *
24397818 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GTATTGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATTGTTAGGT
* * * * * * *
24397868 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * * * *
24397919 CACGTGTGTAGTACTACGTCCAGGCTACTACGTGTACCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
24397969 CACATGTCTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
24398019 -AGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CA-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
24398060 GAGCTTCGGT
Statistics
Matches: 314, Mismatches: 66, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
48 3 0.01
49 7 0.02
50 201 0.64
51 71 0.23
52 32 0.10
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:24397922 original size:101 final size:100
Alignment explanation
Indices: 24397665--24398059 Score: 332
Period size: 101 Copynumber: 3.9 Consensus size: 100
24397655 ACAGTTTTTG
* * * ** * * * *
24397665 GTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTATAGTA
1 GTCACATGTCTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCACGTGTGTAGTA
* * * * * **
24397730 CTAAGGGCAGGATACTATGCGTACTC-GATAGTTTC
66 CTAAGTGCAGGCTACTATGTGTAC-CAGATGGATAA
* * * * * * * ***
24397765 GATCACGTGTGTAATACTAAGTGCAGGCTCCTACGTGTATCAAATGGTTCAG-TCACGTGTGTAG
1 G-TCACATGTCTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAAT-AGATCACGTGTGTAG
*
24397829 TACTAAGTGCAGGCTACTATGTGTACC-GTATTGATAA
64 TACTAAGTGCAGGCTACTATGTGTACCAG-ATGGATAA
* * * * *
24397866 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGATCACGTGTGTAG
1 GTCACATGTCTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAA--TAGATCACGTGTGTAG
* * *
24397930 TACTACGTCCAGGCTACTACGTGTACCAGATGGATAA
64 TACTAAGTGCAGGCTACTATGTGTACCAGATGGATAA
* * * *
24397967 GTCACATGTCTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT-AGCATGTGTAGT
1 GTCACATGTCTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCA-CGTGTGTAGT
*
24398031 ACTAAGTGCAGGCTACTATGCGTACCAGA
65 ACTAAGTGCAGGCTACTATGTGTACCAGA
24398060 GAGCTTCGGT
Statistics
Matches: 239, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
99 2 0.01
100 73 0.31
101 158 0.66
102 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
GTCACATGTCTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCACGTGTGTAGTA
CTAAGTGCAGGCTACTATGTGTACCAGATGGATAA
Found at i:24397943 original size:151 final size:151
Alignment explanation
Indices: 24397665--24398056 Score: 563
Period size: 151 Copynumber: 2.6 Consensus size: 151
24397655 ACAGTTTTTG
* * *
24397665 GTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTATAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
* * * * * *
24397730 CTAAGGGCAGGATACTATGCGTACTCGATAGTTTCGATCACGTGTGTAATACTAAGTGCAGGCTC
66 CTAAGTGCAGGCTACTATGCGTACCCGATACTTTCGATCACGTGTGTAATACTAAGTCCAGGCTA
* * *
24397795 CTACGTGTATCAAATGGTTCA
131 CTACGTGTACCAAATGGATAA
* * *
24397816 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GTATTGATAAGTCGCATGTGTAGT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATTGATAGGTCGCATGTGTAGT
* * *
24397880 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTT-GATCACGTGTGTAGTACTACGTCCAGGC
65 ACTAAGTGCAGGCTACTATGCGTACCCGAT-ACTTTCGATCACGTGTGTAATACTAAGTCCAGGC
*
24397944 TACTACGTGTACCAGATGGATAA
129 TACTACGTGTACCAAATGGATAA
* *
24397967 GTCACATGTCTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTAGCATGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
24398032 CTAAGTGCAGGCTACTATGCGTACC
66 CTAAGTGCAGGCTACTATGCGTACC
24398057 AGAGAGCTTC
Statistics
Matches: 214, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
150 1 0.00
151 208 0.97
152 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (151 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGATACTTTCGATCACGTGTGTAATACTAAGTCCAGGCTA
CTACGTGTACCAAATGGATAA
Found at i:24398929 original size:180 final size:180
Alignment explanation
Indices: 24398616--24399153 Score: 839
Period size: 180 Copynumber: 3.0 Consensus size: 180
24398606 ATCCGAGATC
* * * *
24398616 TGTACCATGAGATAAATAATTTTTAGTGAAGA-AAGATCAGAACTGTTAGACAGTGAAATAGGGG
1 TGTACCATGAGATAAATAATTTTTAGTGAAGAGATG-TCGGAACTATTGGACAGTGAAATAGGGG
* * *
24398680 TATA-TTTAATGAATAAACTGTATTAATTGGATAAACCAAAAATTC-TAAAACTTTTATGGTAAG
65 TA-ACTTTAATGAATAAACTGTACTAATTGGTTAAACCAAAAATTCTTAAAA-TTTTATGGTAAA
* * * * * * **
24398743 AATATATATAAGTATAGTTTTTGGGAAAATTAGCAGTTCTTAATTTGGAGTCT
128 AATATATGTGAGTCTAGTTTCTGAGAAAATTAACAAATCTTAATTTGGAGTCT
* * *
24398796 TGTATCATGAGATAAATAGTTTTTAGTGAAGAGATGTCGGAACTATTGGACAGTGAAACAGGGGT
1 TGTACCATGAGATAAATAATTTTTAGTGAAGAGATGTCGGAACTATTGGACAGTGAAATAGGGGT
*
24398861 AACTTTAATGAATAACCTGTACTAATTGGTTAAACCAAAAATTCTTAAAATTTTATGGTAAAAAT
66 AACTTTAATGAATAAACTGTACTAATTGGTTAAACCAAAAATTCTTAAAATTTTATGGTAAAAAT
24398926 ATATGTGAGTCTAGTTTCTGAGAAAATTAACAAATCTTAATTTGGAGTCT
131 ATATGTGAGTCTAGTTTCTGAGAAAATTAACAAATCTTAATTTGGAGTCT
24398976 TGTACCATGAGATAAATAATTTTTAGTGAAGAGATGTCGGAACTATTGGACAGTGAAATAGGGGT
1 TGTACCATGAGATAAATAATTTTTAGTGAAGAGATGTCGGAACTATTGGACAGTGAAATAGGGGT
* *
24399041 AACTTTAATGAATAAACTGTACTAATTGGTTAAACCAAAAATTCTAAAAATTTTATAGTAAAAAT
66 AACTTTAATGAATAAACTGTACTAATTGGTTAAACCAAAAATTCTTAAAATTTTATGGTAAAAAT
24399106 ATATGTGAGTCTAGTTTCTGAGAAAATTAACAAATCTTAATTTGGAGT
131 ATATGTGAGTCTAGTTTCTGAGAAAATTAACAAATCTTAATTTGGAGT
24399154 TCTATAGCTC
Statistics
Matches: 330, Mismatches: 25, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
179 1 0.00
180 322 0.98
181 7 0.02
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (180 bp):
TGTACCATGAGATAAATAATTTTTAGTGAAGAGATGTCGGAACTATTGGACAGTGAAATAGGGGT
AACTTTAATGAATAAACTGTACTAATTGGTTAAACCAAAAATTCTTAAAATTTTATGGTAAAAAT
ATATGTGAGTCTAGTTTCTGAGAAAATTAACAAATCTTAATTTGGAGTCT
Found at i:24409531 original size:51 final size:51
Alignment explanation
Indices: 24409476--24409575 Score: 114
Period size: 51 Copynumber: 2.0 Consensus size: 51
24409466 CTACCACATA
* *
24409476 ACATGTAA-CACATCCATAATGAACTCAG-ACCTCTCAACGATCTCGGATGTT
1 ACATG-AATCACATCCACAATGAAC-CAGAACCTCTCAACGAGCTCGGATGTT
** * *
24409527 ACATGAATTGCATCCACCATGAACCCGAACCTCTCAACGAGCTCGGATG
1 ACATGAATCACATCCACAATGAACCAGAACCTCTCAACGAGCTCGGATG
24409576 CTTGCATCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
50 4 0.10
51 37 0.90
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (51 bp):
ACATGAATCACATCCACAATGAACCAGAACCTCTCAACGAGCTCGGATGTT
Found at i:24409602 original size:43 final size:43
Alignment explanation
Indices: 24409534--24409619 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
24409524 GTTACATGAA
*
24409534 TTGCATCCACCATGAACCCGAACCTCTCAACGAGCTCGGATGC
1 TTGCATCCACAATGAACCCGAACCTCTCAACGAGCTCGGATGC
* * * * *
24409577 TTGCATCCATAATGAACTCGGACCTCTCAATGAGCTTGGATGC
1 TTGCATCCACAATGAACCCGAACCTCTCAACGAGCTCGGATGC
24409620 GACATATCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (43 bp):
TTGCATCCACAATGAACCCGAACCTCTCAACGAGCTCGGATGC
Found at i:24415977 original size:20 final size:20
Alignment explanation
Indices: 24415948--24415992 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
24415938 TGCACGCGCC
*
24415948 CGTGTGCTTGGGGACATGCT
1 CGTGTGCTTGGGGACACGCT
*
24415968 CGTGTTCTTGGGGACACGCT
1 CGTGTGCTTGGGGACACGCT
24415988 CGTGT
1 CGTGT
24415993 CCCTTACCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.22, G:0.38, T:0.31
Consensus pattern (20 bp):
CGTGTGCTTGGGGACACGCT
Found at i:24425779 original size:21 final size:21
Alignment explanation
Indices: 24425733--24425781 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
24425723 ATGATAGTCT
*
24425733 GAAAGCAGCTTCGGATCGTCA
1 GAAATCAGCTTCGGATCGTCA
*
24425754 GAAATCAGCTTTGGATCGTCA
1 GAAATCAGCTTCGGATCGTCA
24425775 GAAATCA
1 GAAATCA
24425782 TATGCATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (21 bp):
GAAATCAGCTTCGGATCGTCA
Found at i:24430578 original size:34 final size:34
Alignment explanation
Indices: 24430540--24430606 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
24430530 ATTACTTATA
24430540 TCCATCGAA-ATTCATCATTCAAACAGAACTTAAC
1 TCCAT-GAATATTCATCATTCAAACAGAACTTAAC
* *
24430574 TCCATTAATATTTATCATTCAAACAGAACTTAA
1 TCCATGAATATTCATCATTCAAACAGAACTTAA
24430607 TATTTTTCGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 2 0.07
34 28 0.93
ACGTcount: A:0.42, C:0.22, G:0.04, T:0.31
Consensus pattern (34 bp):
TCCATGAATATTCATCATTCAAACAGAACTTAAC
Found at i:24433269 original size:33 final size:33
Alignment explanation
Indices: 24433232--24433296 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
24433222 AGCATTTAAC
*
24433232 TCAATTATTATTGAACCATGAATGAAAACTAAA
1 TCAATTATGATTGAACCATGAATGAAAACTAAA
24433265 TCAATTATGATTGAACCATGAATGAAAACTAA
1 TCAATTATGATTGAACCATGAATGAAAACTAA
24433297 GTATTCATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (33 bp):
TCAATTATGATTGAACCATGAATGAAAACTAAA
Found at i:24435270 original size:40 final size:40
Alignment explanation
Indices: 24435212--24435344 Score: 185
Period size: 40 Copynumber: 3.3 Consensus size: 40
24435202 TTGCTGGTAC
* *
24435212 TCGTGCTGGTGTTATATCCAGGCTAAGTCCCGAAGAGCAT
1 TCGTGCTGGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
* *
24435252 TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 TCGTGCTGGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
* * * *
24435292 TCGTGCTGGTGTTACATCCGGGCTAAGTCCTGAAGGGCAT
1 TCGTGCTGGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
*
24435332 TCGTGCCGGTGAT
1 TCGTGCTGGTGAT
24435345 GTGTAATCAG
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
TCGTGCTGGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
Found at i:24438889 original size:22 final size:21
Alignment explanation
Indices: 24438864--24438933 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 21
24438854 ACATGCATAT
24438864 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAA-GCCGAATGGCCA
* *
24438886 ATGTGATGATG-TGACAT-G-C-
1 ATGTGAT-AAGCCGA-ATGGCCA
24438905 ATAGTGATAAGCCGAATGGCCA
1 AT-GTGATAAGCCGAATGGCCA
24438927 ATGTGAT
1 ATGTGAT
24438934 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 15
0.66 0.07 0.27
Matches are distributed among these distances:
19 6 0.16
20 9 0.24
21 9 0.24
22 12 0.32
23 1 0.03
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.24
Consensus pattern (21 bp):
ATGTGATAAGCCGAATGGCCA
Found at i:24439026 original size:22 final size:22
Alignment explanation
Indices: 24439000--24439120 Score: 70
Period size: 22 Copynumber: 5.2 Consensus size: 22
24438990 ATGCATATAC
24439000 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * *
24439022 GTGATGAATG-TGAACTTG-CATATGT
1 GTGAT-AAGGCCGAA-TGGCCA-A--T
24439047 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * *
24439069 GTGATGAATG-TGAACAT-GCATATAT
1 GTGAT-AAGGCCG-A-ATGGC-CA-AT
24439094 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
24439116 GTGAT
1 GTGAT
24439121 GAATGTGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 28
0.65 0.11 0.25
Matches are distributed among these distances:
22 24 0.33
23 15 0.21
24 15 0.21
25 19 0.26
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:24439200 original size:141 final size:137
Alignment explanation
Indices: 24438843--24439210 Score: 539
Period size: 141 Copynumber: 2.7 Consensus size: 137
24438833 GATTTTATGA
24438843 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATG-ATGTGACATG-CA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA-ATGTCA
24438906 TA-GT-GATAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCGAATG
65 TATGTGGATAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCGAATG
24438969 GCCAATGT
130 GCCAATGT
*
24438977 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACT-TGC
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-TGT-C
*
24439041 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
64 ATATGTG-GATAA-GCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGG-CG
24439106 AATGGCCAATGT
126 AATGGCCAATGT
** *
24439118 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAAGTGTA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAA-TGT-
* ** *
24439183 TATATGTGGCGAAGCCGAATGGCTAATG
63 CATATGTGGATAAGCCGAATGGCCAATG
24439211 CGAAATGTGT
Statistics
Matches: 211, Mismatches: 12, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
134 51 0.24
135 7 0.03
136 4 0.02
137 2 0.01
139 5 0.02
140 47 0.22
141 80 0.38
142 7 0.03
143 8 0.04
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (137 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTCAT
ATGTGGATAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCGAATGG
CCAATGT
Found at i:24439205 original size:47 final size:47
Alignment explanation
Indices: 24438843--24439170 Score: 553
Period size: 47 Copynumber: 7.1 Consensus size: 47
24438833 GATTTTATGA
24438843 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
24438890 GATG-ATGTG-ACATGC--ATA-GTGATAA-GCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
24438931 GATGAATGTGAACATGCATATACGTGATAAGG-CGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
24438977 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
24439024 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
24439071 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
24439118 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
24439165 GATGAA
1 GATGAA
24439171 CGTGGAAGTG
Statistics
Matches: 267, Mismatches: 7, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
41 20 0.07
42 12 0.04
43 9 0.03
45 9 0.03
46 58 0.22
47 159 0.60
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:24439365 original size:46 final size:46
Alignment explanation
Indices: 24439194--24439345 Score: 252
Period size: 46 Copynumber: 3.3 Consensus size: 46
24439184 ATATGTGGCG
* *
24439194 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGT-
1 AAGCCAAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * *
24439239 AAGTCGAATGGCTAATGCGAAACGTGAATGAGATGGATATGAGGTA
1 AAGCCAAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
24439285 AAGCCAAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCAAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
24439331 AAGCCAAATGGCTAA
1 AAGCCAAATGGCTAA
24439346 CGTGAGATAT
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 42 0.42
46 58 0.58
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.22
Consensus pattern (46 bp):
AAGCCAAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:24447425 original size:512 final size:512
Alignment explanation
Indices: 24446461--24448003 Score: 3032
Period size: 512 Copynumber: 3.0 Consensus size: 512
24446451 AAGACAATCA
24446461 AAATGTGTAATTGAAAAGAATCCCGTTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
1 AAATGTGTAATTGAAAAGAATCCCGTTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
24446526 ACTAGGATATTTGAGTTCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
66 ACTAGGATATTTGAGTTCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
24446591 CGAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
131 CGAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
24446656 CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCTGCAGGCTATTGAGTT
196 CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCTGCAGGCTATTGAGTT
24446721 TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
261 TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
24446786 GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
326 GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
24446851 GTTGTGGAAGGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
391 GTTGTGGAAGGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
24446916 TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
456 TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
*
24446973 AAATGTGTAATTGAAAAGAATCCCATTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
1 AAATGTGTAATTGAAAAGAATCCCGTTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
*
24447038 ACTAGGATATTTGAGTTCTGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
66 ACTAGGATATTTGAGTTCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
24447103 CGAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
131 CGAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
24447168 CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCTGCAGGCTATTGAGTT
196 CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCTGCAGGCTATTGAGTT
24447233 TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
261 TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
24447298 GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
326 GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
24447363 GTTGTGGAAGGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
391 GTTGTGGAAGGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
24447428 TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
456 TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
24447485 AAATGTGTAATTGAAAAGAATCCCGTTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
1 AAATGTGTAATTGAAAAGAATCCCGTTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
24447550 ACTAGGATATTTGAGTTCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
66 ACTAGGATATTTGAGTTCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
*
24447615 CAAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
131 CGAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
* *
24447680 CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCCGTAGGCTATTGAGTT
196 CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCTGCAGGCTATTGAGTT
24447745 TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
261 TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
24447810 GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
326 GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
*
24447875 GTTGTGGAACGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
391 GTTGTGGAAGGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
24447940 TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
456 TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
24447997 AAATGTG
1 AAATGTG
24448004 GACTTCGTAT
Statistics
Matches: 1023, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
512 1023 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (512 bp):
AAATGTGTAATTGAAAAGAATCCCGTTTGAACCTTGGGAATAGATTAGGATACAAGTGACATGTC
ACTAGGATATTTGAGTTCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
CGAGCTTGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTGAGT
CTGAGTTCACTTATGGGCGGGTTACATGGTAGCTTGGCTACATAATTTCTGCAGGCTATTGAGTT
TGTCTAGCTACGAGTATGGCACTTACGTGCATGAAATCCGTGTATCCGAATTATATTCCGATTGT
GTTCAACGGGTAAAGTTCTAGTGAAATGGAAGAATTCTCGAGATGAAAGTGACTAGTTGGTAAGT
GTTGTGGAAGGGATACTTTGTACAGGTATGTACTTAACCCTCGGGTTGAGACTTCAATATAACAA
TAATATGGTAAGATCATGAATGAGAAATATGATATGAATGCTTTGGTGATATTATGC
Found at i:24463909 original size:19 final size:18
Alignment explanation
Indices: 24463870--24463912 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
24463860 CTTTATTATG
*
24463870 TTTTTGTATTTTAGCATA
1 TTTTTGTATTGTAGCATA
24463888 TTTTATGTATTGTAGC-TGA
1 TTTT-TGTATTGTAGCAT-A
24463907 TTTTTG
1 TTTTTG
24463913 AATCATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.19, C:0.05, G:0.16, T:0.60
Consensus pattern (18 bp):
TTTTTGTATTGTAGCATA
Found at i:24464125 original size:67 final size:63
Alignment explanation
Indices: 24464051--24464257 Score: 211
Period size: 67 Copynumber: 3.2 Consensus size: 63
24464041 CATCACGTGT
* *
24464051 ACAAGAGAGCTACGAGACATTATGATGTGCTAGGTCACGTGGGTGATACTATGTGTACACCATGT
1 ACAAGAGAGCTACGAG--A-TAT-ATGTGCTAGGTCACATGGGTGGTACTATGTGTACACCATGT
24464116 AG
62 AG
* * * * * *
24464118 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGT-GCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGT
24464183 AG
62 AG
* * *
24464185 ACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATA-TGTGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG
24464247 TACAAGAGAGC
1 -ACAAGAGAGC
24464258 CAAAATTATG
Statistics
Matches: 117, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 23 0.20
64 21 0.18
65 1 0.01
66 21 0.18
67 48 0.41
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (63 bp):
ACAAGAGAGCTACGAGATATATGTGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG
Found at i:24480756 original size:17 final size:18
Alignment explanation
Indices: 24480723--24480761 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
24480713 CAAATGGCTT
24480723 GCCCGTGTAGACCCACAC
1 GCCCGTGTAGACCCACAC
*
24480741 GCCCGTGT-GGCCCACAC
1 GCCCGTGTAGACCCACAC
24480758 GCCC
1 GCCC
24480762 AGATTGGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.15, C:0.49, G:0.26, T:0.10
Consensus pattern (18 bp):
GCCCGTGTAGACCCACAC
Found at i:24490599 original size:40 final size:41
Alignment explanation
Indices: 24490544--24490731 Score: 244
Period size: 40 Copynumber: 4.7 Consensus size: 41
24490534 TGATTATTCG
*
24490544 GACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TT
1 GACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTT
24490584 GACTATATCCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTT
1 GACTATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCGAGTT
* ** *
24490625 G-CTATATCCGGGCTAAGTTCCGAAGGCTTTTGTGCTAG-T
1 GACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTT
* * *
24490664 GACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTT
1 GACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTT
*
24490705 G-CTATATCC-GGCTAAATCCCGAAGGCA
1 GACTATATCCGGGCTAAGTCCCGAAGGCA
24490732 CTTTGGTTTG
Statistics
Matches: 132, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
39 19 0.14
40 108 0.82
41 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (41 bp):
GACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTT
Found at i:24490679 original size:80 final size:80
Alignment explanation
Indices: 24490546--24490731 Score: 293
Period size: 80 Copynumber: 2.3 Consensus size: 80
24490536 ATTATTCGGA
* *
24490546 CTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGG
1 CTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGG
* *
24490611 CGTTTGTGCGAGTTG
66 CATTTGTACGAGTTG
* **
24490626 CTATATCCGGGCTAAGTTCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGG
1 CTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGG
24490691 CATTTGTACGAGTTG
66 CATTTGTACGAGTTG
*
24490706 CTATATCC-GGCTAAATCCCGAAGGCA
1 CTATATCCGGGCTAAGTCCCGAAGGCA
24490732 CTTTGGTTTG
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 15 0.16
80 81 0.84
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
CTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGG
CATTTGTACGAGTTG
Found at i:24496370 original size:25 final size:25
Alignment explanation
Indices: 24496332--24496397 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
24496322 AGCAGAGCCG
** **
24496332 TATTCACAGTTCGTGTAAGTAATTA
1 TATTCACAACTCGTGTAAACAATTA
*
24496357 TATTCACAACTCGTGTAAACATTTA
1 TATTCACAACTCGTGTAAACAATTA
24496382 TATTCACAACTCGTGT
1 TATTCACAACTCGTGT
24496398 GAGCAACTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (25 bp):
TATTCACAACTCGTGTAAACAATTA
Found at i:24499305 original size:28 final size:28
Alignment explanation
Indices: 24499242--24499423 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
24499232 ATATTAAGTC
* *
24499242 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24499269 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
24499297 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24499325 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24499353 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24499381 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
24499409 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24499424 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 127 0.85
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:24511141 original size:10 final size:10
Alignment explanation
Indices: 24511109--24511134 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24511099 GGCCATATAC
24511109 ATATAACTCA
1 ATATAACTCA
24511119 ATATAACTCA
1 ATATAACTCA
24511129 ATATAA
1 ATATAA
24511135 GCCAATACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (10 bp):
ATATAACTCA
Found at i:24516171 original size:25 final size:25
Alignment explanation
Indices: 24516143--24516194 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
24516133 AAAACCAAAG
*
24516143 TTGTCGAATAATCGTCCCGTTTCGA
1 TTGTCGAATAATCATCCCGTTTCGA
24516168 TTGTCGAATAATCATCCCGTTTCGA
1 TTGTCGAATAATCATCCCGTTTCGA
24516193 TT
1 TT
24516195 ATCGTTGTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (25 bp):
TTGTCGAATAATCATCCCGTTTCGA
Found at i:24516511 original size:43 final size:43
Alignment explanation
Indices: 24516433--24516537 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
24516423 TATGTGTTCT
* * *
24516433 CGTGTAAGACCACATCT-GGACATTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTAGGACAGTGGCATCAATATGTGATTA
24516475 CGTGTAAGACC-CTGTCTAGGACAGTGGCATCAATATGTGATTA
1 CGTGTAAGACCAC-GTCTAGGACAGTGGCATCAATATGTGATTA
*
24516518 CATGTAAGACCACGTCTAGG
1 CGTGTAAGACCACGTCTAGG
24516538 GCGTTGGCAT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
41 1 0.02
42 14 0.25
43 40 0.71
44 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACAGTGGCATCAATATGTGATTA
Found at i:24524382 original size:44 final size:44
Alignment explanation
Indices: 24524334--24524423 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
24524324 TATGTGGAAG
*
24524334 TAAATATGTTGTTGCCGAATATGAATATGCTTGGGAGCTATGTT
1 TAAATATGTGGTTGCCGAATATGAATATGCTTGGGAGCTATGTT
24524378 TAAATATGTGGTTGCCGAATATGAATATGCTTGGGAGCTATGTT
1 TAAATATGTGGTTGCCGAATATGAATATGCTTGGGAGCTATGTT
24524422 TA
1 TA
24524424 CGAATTTGAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.38
Consensus pattern (44 bp):
TAAATATGTGGTTGCCGAATATGAATATGCTTGGGAGCTATGTT
Found at i:24527404 original size:29 final size:29
Alignment explanation
Indices: 24527362--24527489 Score: 145
Period size: 29 Copynumber: 4.5 Consensus size: 29
24527352 GATGGAAATT
*
24527362 ATATGAATGTGATTTGGGCCTCATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
24527391 ATATGAATGTGATTTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
24527420 ATACGAATGTGATTTTGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* ** *
24527449 ATCTGAATAAGA-TTGGGCCT-AGGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
24527476 ATATGCATGT-ATTT
1 ATATGAATGTGATTT
24527490 AGGCTTGTTT
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 13 0.16
28 7 0.09
29 60 0.74
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:24537334 original size:45 final size:45
Alignment explanation
Indices: 24537265--24537354 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
24537255 CCATATTGTC
*
24537265 AATTTTAATAGAATGGTTTAGACAATCACCTTCAGTTTTCGATGT
1 AATTTTAATAGAATGGTTTAGACAATCACCTTCAATTTTCGATGT
* *
24537310 AATTTTAGTAGAATGGTTTTGACAATCACCTTCAATTTTCGATGT
1 AATTTTAATAGAATGGTTTAGACAATCACCTTCAATTTTCGATGT
24537355 GTTGCCGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (45 bp):
AATTTTAATAGAATGGTTTAGACAATCACCTTCAATTTTCGATGT
Found at i:24539600 original size:19 final size:19
Alignment explanation
Indices: 24539563--24539601 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
24539553 ACCTTCCAGA
* * *
24539563 AGAAAATAAATGAAGAATT
1 AGAAAAGAAATAAAAAATT
24539582 AGAAAAGAAATAAAAAATT
1 AGAAAAGAAATAAAAAATT
24539601 A
1 A
24539602 ACTTGCAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.18
Consensus pattern (19 bp):
AGAAAAGAAATAAAAAATT
Found at i:24541780 original size:28 final size:28
Alignment explanation
Indices: 24541740--24541810 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
24541730 CTCGATAAAG
24541740 TCGCACACTTAGTGCT-TA-ATAGTCAAAC
1 TCGCACACTTAGTGCTATACA-A-TCAAAC
*
24541768 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
24541796 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
24541811 CAATCTCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 36 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:24549481 original size:28 final size:28
Alignment explanation
Indices: 24549441--24549511 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
24549431 CTCGATAAAG
24549441 TCGCACACTTAGTGCT-TA-ATAGTCAAAC
1 TCGCACACTTAGTGCTATACA-A-TCAAAC
*
24549469 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
24549497 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
24549512 CAATCTCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 36 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:24563459 original size:27 final size:27
Alignment explanation
Indices: 24563429--24563606 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24563419 ATATTGAGTC
* * * *
24563429 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24563456 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24563483 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24563511 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24563538 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24563565 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24563592 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24563607 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24563568 original size:82 final size:81
Alignment explanation
Indices: 24563450--24563605 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24563440 TGCTATATAA
* *
24563450 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24563515 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24563532 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24563596 CACTTAGTGC
65 CACTTAGTGC
24563606 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24564104 original size:14 final size:14
Alignment explanation
Indices: 24564085--24564115 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
24564075 ATGGCATACT
24564085 TATGTATATATATA
1 TATGTATATATATA
24564099 TATGTATATATATA
1 TATGTATATATATA
24564113 TAT
1 TAT
24564116 ACTTCGGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:24568017 original size:30 final size:30
Alignment explanation
Indices: 24567972--24568031 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
24567962 ATTTAATACG
*
24567972 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
24568002 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
24568032 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:24570330 original size:40 final size:40
Alignment explanation
Indices: 24570270--24570386 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
24570260 CGAATACACG
* * * * *
24570270 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
24570310 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
24570350 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
24570387 TTAGTAACTC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:24570411 original size:40 final size:40
Alignment explanation
Indices: 24570283--24570465 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
24570273 CCAGCATGAT
* * *
24570283 TGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
24570323 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
24570363 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* *
24570404 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAA
*
24570444 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
24570466 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 99 0.82
41 19 0.16
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAA
Found at i:24570411 original size:80 final size:81
Alignment explanation
Indices: 24570270--24570465 Score: 211
Period size: 80 Copynumber: 2.4 Consensus size: 81
24570260 CGAATACACG
* * * * * **
24570270 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGAA
24570335 CTTAGCCCGGATA-CA
66 CTTAGCCCGGATATCA
* *
24570350 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACCAATGCTCTTCGGA
* * **
24570414 TCTTAGTCCGGATATGG
65 ACTTAGCCCGGATATCA
* *
24570431 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
24570466 CATCATTCGA
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 5 0.05
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (81 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGCCCGGATATCA
Done.