Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 79 of 373
Found at i:24570812 original size:29 final size:29
Alignment explanation
Indices: 24570773--24570851 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
24570763 CTTAATAATC
*
24570773 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
24570803 AACTCGCACACTTAGTGCCATGCATTTCT
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24570832 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24570852 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24570894 original size:43 final size:43
Alignment explanation
Indices: 24570833--24570935 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
24570823 TGCATTTCTA
24570833 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24570876 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24570919 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24570936 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24572840 original size:37 final size:37
Alignment explanation
Indices: 24572790--24572868 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24572780 TTATTACGAA
* *
24572790 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24572827 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24572864 GTCTT
1 GTCTT
24572869 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24573065 original size:47 final size:47
Alignment explanation
Indices: 24572987--24573413 Score: 710
Period size: 47 Copynumber: 9.1 Consensus size: 47
24572977 CCCTTCGGGA
* * * * * * *
24572987 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
24573034 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24573081 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24573128 CTTATTACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24573175 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24573222 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24573269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24573316 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24573363 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCGTTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24573410 CTTA
1 CTTA
24573414 CTATCATTTC
Statistics
Matches: 358, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 358 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24576371 original size:40 final size:40
Alignment explanation
Indices: 24576316--24576496 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
24576306 AGCATGATTA
* *
24576316 CTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
24576356 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
24576396 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
24576437 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
24576477 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
24576497 CATCATTCGA
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 94 0.80
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:24576841 original size:29 final size:29
Alignment explanation
Indices: 24576802--24576880 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24576792 CTTAATAATC
*
24576802 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24576832 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24576861 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24576881 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24576923 original size:43 final size:43
Alignment explanation
Indices: 24576862--24576964 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
24576852 TGCATTTCAA
24576862 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24576905 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24576948 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24576965 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24578867 original size:37 final size:37
Alignment explanation
Indices: 24578817--24578895 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24578807 TTATTACGAA
* *
24578817 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24578854 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24578891 GTCTT
1 GTCTT
24578896 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24579092 original size:47 final size:47
Alignment explanation
Indices: 24579014--24579389 Score: 653
Period size: 47 Copynumber: 8.0 Consensus size: 47
24579004 CCCTTCGGGA
* * * * * * *
24579014 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
24579061 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24579108 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24579155 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24579202 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24579249 CTTATCACATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24579296 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24579343 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24579390 TTACTATCAT
Statistics
Matches: 314, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 314 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24582350 original size:40 final size:40
Alignment explanation
Indices: 24582293--24582475 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
24582283 CCAGCATGAT
* *
24582293 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
24582333 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
24582373 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
24582414 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
24582454 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
24582476 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.81
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:24582820 original size:29 final size:29
Alignment explanation
Indices: 24582781--24582859 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24582771 CTTAATAATC
*
24582781 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24582811 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24582840 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24582860 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24582919 original size:42 final size:43
Alignment explanation
Indices: 24582841--24582980 Score: 238
Period size: 43 Copynumber: 3.4 Consensus size: 43
24582831 TGCATTTCAA
24582841 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24582884 GCCCGCACACTTAGTGCC-ATCTCACAACCGTGAACACTTA-T
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24582925 G--C-C-CACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24582964 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24582981 TGAAAACCAA
Statistics
Matches: 91, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
37 11 0.12
38 23 0.25
39 3 0.03
41 3 0.03
42 23 0.25
43 28 0.31
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24582953 original size:38 final size:39
Alignment explanation
Indices: 24582848--24582967 Score: 190
Period size: 38 Copynumber: 3.0 Consensus size: 39
24582838 CAAGCCCGCA
24582848 CACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGC
1 CACTTAGTGCCAATCTCACAACCGTGAACACTTATTG--C-C
24582890 ACACTTAGTGCC-ATCTCACAACCGTGAACACTTA-TGCC
1 -CACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
24582928 CACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
24582967 C
1 C
24582968 GCACACTTAG
Statistics
Matches: 75, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
37 11 0.15
38 23 0.31
39 6 0.08
41 2 0.03
42 22 0.29
43 11 0.15
ACGTcount: A:0.28, C:0.35, G:0.13, T:0.24
Consensus pattern (39 bp):
CACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
Found at i:24584884 original size:37 final size:37
Alignment explanation
Indices: 24584834--24584912 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24584824 TTATTACGAA
* *
24584834 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24584871 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24584908 GTCTT
1 GTCTT
24584913 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24585109 original size:47 final size:47
Alignment explanation
Indices: 24585031--24585363 Score: 540
Period size: 47 Copynumber: 7.1 Consensus size: 47
24585021 CCCTTCGGGA
* * * * * * *
24585031 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
24585078 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24585125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24585172 CTTATTACATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24585219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24585266 CTTATCACATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24585313 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24585360 CTTA
1 CTTA
24585364 CTATCATTTC
Statistics
Matches: 266, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 266 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24585275 original size:22 final size:22
Alignment explanation
Indices: 24585247--24585322 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
24585237 TTTCACATTC
24585247 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
**** ** *
24585269 ATCACATATATACACTTTCGCATT
1 ATCACAT-CGGCCA-TTAGGCCTT
24585293 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
24585316 ATCACAT
1 ATCACAT
24585323 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:24598828 original size:22 final size:23
Alignment explanation
Indices: 24598798--24598840 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24598788 CACTCATGGC
*
24598798 TATATATATATACAA-ACCAAAA
1 TATAAATATATACAATACCAAAA
*
24598820 TATAAATATTTACAATACCAA
1 TATAAATATATACAATACCAA
24598841 TTCATTTGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (23 bp):
TATAAATATATACAATACCAAAA
Found at i:24608362 original size:22 final size:22
Alignment explanation
Indices: 24608337--24608397 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
24608327 AAGTAAGCTC
24608337 GGTTAAGCTCAAACGAGCTGAA
1 GGTTAAGCTCAAACGAGCTGAA
*
24608359 GGTTGAGCTCAAACGAGCTGAA
1 GGTTAAGCTCAAACGAGCTGAA
* *
24608381 --ATAAGCTCAAATGAGCT
1 GGTTAAGCTCAAACGAGCT
24608398 TAATTGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 14 0.40
22 21 0.60
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (22 bp):
GGTTAAGCTCAAACGAGCTGAA
Found at i:24608407 original size:20 final size:20
Alignment explanation
Indices: 24608342--24608407 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
24608332 AGCTCGGTTA
24608342 AGCTCAAACGAGCTGAAGGTTG
1 AGCTCAAACGAGCTGAA--TTG
* *
24608364 AGCTCAAACGAGCTGAAATA
1 AGCTCAAACGAGCTGAATTG
* *
24608384 AGCTCAAATGAGCTTAATTG
1 AGCTCAAACGAGCTGAATTG
24608404 AGCT
1 AGCT
24608408 TGTTGGAGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 21 0.55
22 17 0.45
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (20 bp):
AGCTCAAACGAGCTGAATTG
Found at i:24623167 original size:44 final size:42
Alignment explanation
Indices: 24623087--24623211 Score: 151
Period size: 44 Copynumber: 2.9 Consensus size: 42
24623077 TTACATGGGA
* * * * *
24623087 TCTCGTATGGATGCCAATAGCCCAACTATGGTCTTACACTAAG
1 TCTCATATAGATGCC-ATATCCCAAATATGGTCTTACACGAAG
* * *
24623130 TCTCTTATCGATGCCATATCCCAGATATATTGTCTTACACGAAG
1 TCTCATATAGATGCCATATCCCA-A-ATATGGTCTTACACGAAG
24623174 TCTCATATAGATGCCATATCCCAAATATGGTCTTACAC
1 TCTCATATAGATGCCATATCCCAAATATGGTCTTACAC
24623212 ATATTCTTAG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
42 20 0.28
43 15 0.21
44 36 0.51
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCTCATATAGATGCCATATCCCAAATATGGTCTTACACGAAG
Found at i:24645293 original size:48 final size:48
Alignment explanation
Indices: 24645201--24645338 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 48
24645191 CATACCGAGG
* * * * * **
24645201 CCGATGCCATATCCCAGATATGGTCTTAGACTGGCAT-ACGTATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATATCAACA
** *
24645249 TTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACA
*
24645297 CCGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA
24645339 AATCATGGTG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 74 0.99
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACA
Found at i:24647660 original size:46 final size:48
Alignment explanation
Indices: 24647486--24647745 Score: 170
Period size: 46 Copynumber: 5.6 Consensus size: 48
24647476 GAACCAATGC
* * *
24647486 CATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTC-ATGTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACATCATCTCGAGGCCGATG
* ** *
24647532 CCATGTCCTAGACATGGTCTTAC-CCCG-ACTATCATCTCGTA-GCTGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCAC-ATCATCTCG-AGGCCGATG
* * * *
24647580 CATGTCCCAGATAT-GTCTTCCACT-G-ACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACAT-CATCTCGAGGCCGATG
* * * *
24647626 CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTTGATGTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACATCATCTCGAGGCCGATG
* * * * * *
24647672 CAATGTCCCAGAAATAGTCTTACAATAGCTC-TCATAAT--ATGGCTGATG
1 C-ATGTCCCAGACATGGTCTTACACTAGCACATCAT-CTCGA-GGCCGATG
24647720 CATGTCCCAGACAT-GTCTTACACTAG
1 CATGTCCCAGACATGGTCTTACACTAG
24647746 TCCACAATAA
Statistics
Matches: 172, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 72 0.42
47 66 0.38
48 29 0.17
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCACATCATCTCGAGGCCGATG
Found at i:24647725 original size:47 final size:46
Alignment explanation
Indices: 24647621--24647741 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 46
24647611 GTCTCGAGGC
* * ** *
24647621 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTTGATGT
1 CGATGCATGTCCCAGACATGTCTTACAATAGCACTCATAATGATGG
* *
24647667 CGATGCAATGTCCCAGAAATAGTCTTACAATAGCTCTCATAAT-ATGG
1 CGATGC-ATGTCCCAGACAT-GTCTTACAATAGCACTCATAATGATGG
24647714 CTGATGCATGTCCCAGACATGTCTTACA
1 C-GATGCATGTCCCAGACATGTCTTACA
24647742 CTAGTCCACA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 14 0.22
47 28 0.44
48 22 0.34
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACAATAGCACTCATAATGATGG
Found at i:24651200 original size:70 final size:70
Alignment explanation
Indices: 24651037--24651185 Score: 284
Period size: 70 Copynumber: 2.2 Consensus size: 70
24651027 TAGGTTTGAA
24651037 AAATTTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTATAGTTGTTATGCAA
1 AAATTTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTATAGTTGTTATGCAA
24651102 CCTGC
66 CCTGC
24651107 AAATTTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTATAGTTGTTATGCAA
1 AAATTTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTATAGTTGTTATGCAA
24651172 CCTGC
66 CCTGC
24651177 -AA-TTTAATC
1 AAATTTTAATC
24651186 GGGTTAGGAT
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
68 7 0.09
69 2 0.03
70 70 0.89
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (70 bp):
AAATTTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGGTTATAGTTGTTATGCAA
CCTGC
Found at i:24657311 original size:26 final size:27
Alignment explanation
Indices: 24657282--24657339 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
24657272 TACTGAACAT
*
24657282 CAGGGCATATT-C-GTCATTTTACCATA
1 CAGGG-ATATTACGGTCACTTTACCATA
* *
24657308 CAGGGGTATTACGGTCACTTTACCCTA
1 CAGGGATATTACGGTCACTTTACCATA
24657335 CAGGG
1 CAGGG
24657340 GCTTTACGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.15
26 6 0.22
27 17 0.63
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (27 bp):
CAGGGATATTACGGTCACTTTACCATA
Found at i:24657356 original size:27 final size:27
Alignment explanation
Indices: 24657294--24657371 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
24657284 GGGCATATTC
24657294 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
24657321 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
24657348 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
24657372 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:24657432 original size:27 final size:27
Alignment explanation
Indices: 24657389--24657670 Score: 156
Period size: 27 Copynumber: 10.4 Consensus size: 27
24657379 TTTCATCCTA
* * *
24657389 CAAGGGTGTTTTGGTAAATTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
24657416 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * ** * *
24657443 TAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* * ** *
24657472 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
24657499 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
24657526 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
24657553 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* ** * *
24657580 C-AGTGATATTTTAGCAATTTTACAGA-
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * ** *
24657606 CTAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * **
24657633 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
24657660 TAAGGGTATTT
1 CAAGGGTATTT
24657671 TACTAATTTT
Statistics
Matches: 199, Mismatches: 51, Indels: 10
0.77 0.20 0.04
Matches are distributed among these distances:
26 21 0.11
27 152 0.76
28 13 0.07
29 13 0.07
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:24657561 original size:54 final size:53
Alignment explanation
Indices: 24657502--24657694 Score: 181
Period size: 54 Copynumber: 3.6 Consensus size: 53
24657492 TGTAAATCAG
* *
24657502 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAACCA
* * * * * * *
24657555 GTGGTATTTTGGTAATTTTACAAA-CCAGTGATATTTTAGCAATTTTACAGACTA
1 G-GGTATTTTGGTAATTTTACAAATCGAG-GGTATTTTGGTAATTTCACAAACCA
** *** *
24657609 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAAC-CA
** **
24657663 GGGTATTTTACTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
24657695 AAACAGTAAT
Statistics
Matches: 111, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 40 0.36
54 71 0.64
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAACCA
Found at i:24657692 original size:27 final size:27
Alignment explanation
Indices: 24657631--24657694 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
24657621 AATTTTACTG
**
24657631 ATCGAGGGTATTTTGGTAATTTTGTAA
1 ATCGAGGGTATTTTACTAATTTTGTAA
*
24657658 A-CTAAGGGTATTTTACTAATTTTGTAA
1 ATC-GAGGGTATTTTACTAATTTTGTAA
24657685 ATCGAGGGTA
1 ATCGAGGGTA
24657695 AAACAGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 29 0.94
28 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (27 bp):
ATCGAGGGTATTTTACTAATTTTGTAA
Found at i:24657704 original size:27 final size:27
Alignment explanation
Indices: 24657674--24657748 Score: 123
Period size: 27 Copynumber: 2.8 Consensus size: 27
24657664 GGTATTTTAC
*
24657674 TAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
*
24657701 TAATTCTGTAAATCAAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
*
24657728 TAATTCTATAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
24657749 CTTTGGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAG
Found at i:24661286 original size:29 final size:29
Alignment explanation
Indices: 24661235--24661294 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
24661225 ACATGTATAC
* *
24661235 CTTCCGCTAAAACAATGTTCCCCAAAAAT
1 CTTCCGCTAAAACAAGGTGCCCCAAAAAT
*
24661264 CTTCCGCTAAAATAAGGTGCCCCAAAAAT
1 CTTCCGCTAAAACAAGGTGCCCCAAAAAT
24661293 CT
1 CT
24661295 AACTTCTCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.30, G:0.10, T:0.23
Consensus pattern (29 bp):
CTTCCGCTAAAACAAGGTGCCCCAAAAAT
Found at i:24670010 original size:86 final size:86
Alignment explanation
Indices: 24669854--24670067 Score: 256
Period size: 86 Copynumber: 2.5 Consensus size: 86
24669844 ATAAAGCTCG
* * * *
24669854 TACAATGAC-ATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCATTATCCCAAACA
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATATCCCAAACA
24669918 GAGTCTTACACGAAATCA-AA
66 GAGTCTTACACGAAATCACAA
* * * *
24669938 TAACTATGCCAATATCCCAGACATGGTCTTACACGTAATCGA-ATAAT-GATGCCAATGTCCCAG
1 T-ACAATGCCAATATCCCAGACATGGTCTTACATGTAATC-ACAT-ATCGATGCCAATATCCCAA
** * *
24670001 ACATTGTCTTATACGTAATCACAA
63 ACAGAGTCTTACACGAAATCACAA
*
24670025 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAT
24670068 CTCGGTAACC
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
84 1 0.01
85 7 0.06
86 95 0.87
87 6 0.06
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (86 bp):
TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATATCCCAAACA
GAGTCTTACACGAAATCACAA
Found at i:24670062 original size:43 final size:43
Alignment explanation
Indices: 24669854--24670066 Score: 204
Period size: 43 Copynumber: 5.0 Consensus size: 43
24669844 ATAAAGCTCG
* * * *
24669854 TACAATGAC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
* * * *
24669895 TATCGATGCCATTATCCCAAACA-GAGTCTTACACGAAATCA-AA
1 TA-CAATGCCAATATCCCAGACATG-GTCTTACACGTAATCACAA
* *
24669938 TAACTATGCCAATATCCCAGACATGGTCTTACACGTAATC-GAA
1 T-ACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
* * *
24669981 TA-ATGATGCCAATGTCCCAGACATTGTCTTATACGTAATCACAA
1 TACA--ATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
* *
24670025 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACA
24670067 TCTCGGTAAC
Statistics
Matches: 141, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.01
42 7 0.05
43 125 0.89
44 6 0.04
45 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
Found at i:24674528 original size:16 final size:16
Alignment explanation
Indices: 24674507--24674546 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
24674497 TCCAAAATAC
*
24674507 ACACTTTTGTAAATTT
1 ACACTTTTGAAAATTT
*
24674523 ATACTTTTGAAAATTT
1 ACACTTTTGAAAATTT
24674539 ACACTTTT
1 ACACTTTT
24674547 ACCCCTAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (16 bp):
ACACTTTTGAAAATTT
Found at i:24680948 original size:40 final size:40
Alignment explanation
Indices: 24680904--24681032 Score: 179
Period size: 40 Copynumber: 3.2 Consensus size: 40
24680894 ACTAAGATCT
*
24680904 GAAGGCATTTGTGCGAGTTATTAATTCTGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
* * *
24680944 GAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
* * *
24680984 GAAGGCATTCGTGCGAGTT-TTAAAATCCGAGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTCCC
24681024 GAAGGCATT
1 GAAGGCATT
24681033 GTATGAGTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
Found at i:24688629 original size:15 final size:15
Alignment explanation
Indices: 24688609--24688639 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24688599 ATGGAAAGAA
*
24688609 TTAGAAATGATCCAG
1 TTAGAAAAGATCCAG
24688624 TTAGAAAAGATCCAG
1 TTAGAAAAGATCCAG
24688639 T
1 T
24688640 ACCTCAGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (15 bp):
TTAGAAAAGATCCAG
Found at i:24694283 original size:40 final size:40
Alignment explanation
Indices: 24694228--24694450 Score: 356
Period size: 40 Copynumber: 5.6 Consensus size: 40
24694218 ATTTGAATAC
24694228 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
24694268 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
24694308 ATACGGGCTAAGACCCGAAGGCATTGGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
24694348 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* ** *
24694388 ATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
24694428 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
24694451 ATTGAGCTTG
Statistics
Matches: 169, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 169 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:24694469 original size:120 final size:120
Alignment explanation
Indices: 24694228--24694477 Score: 369
Period size: 120 Copynumber: 2.1 Consensus size: 120
24694218 ATTTGAATAC
*
24694228 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * *
24694293 TGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATTGGTGCAAGTTGATAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCATTGGAGCAAGTGGATAT
24694348 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * * ** *
24694413 CGTGTGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATT-GAGCTTGTGGTTAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGC-ATTGGAGCAAGTGGATAT
24694468 ATCC-GGCTAA
1 ATCCGGGCTAA
24694478 ATTCCAAAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
119 6 0.05
120 108 0.92
121 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCATTGGAGCAAGTGGATAT
Found at i:24701008 original size:40 final size:40
Alignment explanation
Indices: 24700953--24701175 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
24700943 ATTTGAATAC
24700953 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
24700993 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
24701033 ATACGGGCTAAGACCCGAAGGCATTGGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
24701073 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
24701113 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
24701153 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
24701176 ATTGAGCTTG
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:24701194 original size:120 final size:120
Alignment explanation
Indices: 24700953--24701202 Score: 378
Period size: 120 Copynumber: 2.1 Consensus size: 120
24700943 ATTTGAATAC
*
24700953 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * *
24701018 TGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATTGGTGCAAGTTGATAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCATTGGAGCAAGTGGATAT
24701073 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * ** *
24701138 CGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATT-GAGCTTGTGGTTAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGC-ATTGGAGCAAGTGGATAT
24701193 ATCC-GGCTAA
1 ATCCGGGCTAA
24701203 ATTCCAAAGA
Statistics
Matches: 118, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
119 6 0.05
120 109 0.92
121 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCATTGGAGCAAGTGGATAT
Found at i:24707745 original size:59 final size:58
Alignment explanation
Indices: 24707653--24707776 Score: 187
Period size: 59 Copynumber: 2.1 Consensus size: 58
24707643 TAAAGTTAAG
* * *
24707653 TTCAC-TAAAAATTATATGTAAGAACACACGAGACTAAGTTAAAGCATATTAAGTAAA
1 TTCACATAAAAATTATATCTAAGAAAACACGAGACTAAGTCAAAGCATATTAAGTAAA
* *
24707710 TTCACATAAAACATTATGTCTAAGAAAACATGAGACTAAGTCAAAGCATATTAAGTAAA
1 TTCACATAAAA-ATTATATCTAAGAAAACACGAGACTAAGTCAAAGCATATTAAGTAAA
24707769 TTCACATA
1 TTCACATA
24707777 TATATACTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 5 0.08
58 5 0.08
59 50 0.83
ACGTcount: A:0.48, C:0.14, G:0.11, T:0.27
Consensus pattern (58 bp):
TTCACATAAAAATTATATCTAAGAAAACACGAGACTAAGTCAAAGCATATTAAGTAAA
Found at i:24712749 original size:43 final size:43
Alignment explanation
Indices: 24712702--24712806 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
24712692 GGTTTAATCT
*
24712702 ATTGGCACTAAGTGTGCGATACAATTATAGCTTTAGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCAGCTAATTA
* * *
24712745 ATTGGCACTAAGTGTGAGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCAGCTAATTA
**
24712788 ATTACCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
24712807 GTTTATTGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCTTCAGCTAATTA
Found at i:24720169 original size:17 final size:17
Alignment explanation
Indices: 24720147--24720181 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
24720137 ATGTTGAAGT
24720147 ATAAATCGACTATTGGA
1 ATAAATCGACTATTGGA
24720164 ATAAATCGACTATTGGA
1 ATAAATCGACTATTGGA
24720181 A
1 A
24720182 GAATGGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (17 bp):
ATAAATCGACTATTGGA
Found at i:24730832 original size:20 final size:20
Alignment explanation
Indices: 24730779--24730828 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
24730769 TTTATGCCTC
24730779 AATGTTATATATTATAAAAAT
1 AATGTTATAT-TTATAAAAAT
*
24730800 AAT-ATACTTATTTATAAAAA-
1 AATGTTA--TATTTATAAAAAT
24730820 AATGTTATA
1 AATGTTATA
24730829 ATTTTTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
19 2 0.08
20 5 0.21
21 14 0.58
22 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
AATGTTATATTTATAAAAAT
Found at i:24730969 original size:14 final size:14
Alignment explanation
Indices: 24730923--24730973 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
24730913 TTTGGACAAT
*
24730923 TTATAAAATATT-TT
1 TTAT-AAATATTATA
*
24730937 TTATAAATGTTAAATA
1 TTATAAATATT--ATA
24730953 TTATAAATATTATA
1 TTATAAATATTATA
24730967 TTATAAA
1 TTATAAA
24730974 AAAGAGATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 6 0.19
14 14 0.45
16 11 0.35
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
TTATAAATATTATA
Found at i:24731669 original size:74 final size:74
Alignment explanation
Indices: 24731554--24731698 Score: 263
Period size: 74 Copynumber: 2.0 Consensus size: 74
24731544 TGTTTATTTG
24731554 TCTTACTATTTTTATTAGTAATCATATTATCATCTACTTTTTTTAGACTAACATGATACATACGA
1 TCTTACTATTTTTATTAGTAATCATATTATCATCTACTTTTTTTAGACTAACATGATACATACGA
24731619 TGATTTGAT
66 TGATTTGAT
* * *
24731628 TCTTACTATTTTTATTAGTAATCTTATTATTATCTACTTTTTTTAGACTAACATGATACATATGA
1 TCTTACTATTTTTATTAGTAATCATATTATCATCTACTTTTTTTAGACTAACATGATACATACGA
24731693 TGATTT
66 TGATTT
24731699 AGTTTTAATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (74 bp):
TCTTACTATTTTTATTAGTAATCATATTATCATCTACTTTTTTTAGACTAACATGATACATACGA
TGATTTGAT
Found at i:24732843 original size:14 final size:15
Alignment explanation
Indices: 24732806--24732843 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
24732796 CAATTAAACA
24732806 TTAAATTTTCAATAT
1 TTAAATTTTCAATAT
*
24732821 TTAAATTTTGAAT-T
1 TTAAATTTTCAATAT
*
24732835 TTGAATTTT
1 TTAAATTTT
24732844 TTTTTTGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (15 bp):
TTAAATTTTCAATAT
Found at i:24733426 original size:18 final size:19
Alignment explanation
Indices: 24733389--24733426 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
24733379 ATTAGACCTG
*
24733389 AAATGAATCTGAGCTTCAA
1 AAATGAATCTGAGATTCAA
*
24733408 AAATGAAT-TGGGATTCAA
1 AAATGAATCTGAGATTCAA
24733426 A
1 A
24733427 TTTAAAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (19 bp):
AAATGAATCTGAGATTCAA
Found at i:24741735 original size:94 final size:93
Alignment explanation
Indices: 24741619--24741808 Score: 222
Period size: 94 Copynumber: 2.0 Consensus size: 93
24741609 CAAATTTAAC
* * * *
24741619 TTATAAAAAACATAAATAATATATATTTAATAAAATTA-ATT-TATGAAATAATTGAAGTGGATG
1 TTATAAAAAACAT-AA-AATATATATTTAATAAAATTATATTATATAAAATAATTAAAATGGAAG
* **
24741682 TGAATTTTAGTATTCTATGATATTATATGAA
64 TGAA-ATTAAAATTCTATGATATTATATGAA
* * * *
24741713 TTATTAAAAATATAAACTATATATTTAATAAAATTATTTTATATAAAATAATTAAAATGGAAGTG
1 TTATAAAAAACATAAAATATATATTTAATAAAATTATATTATATAAAATAATTAAAATGGAAGTG
* *
24741778 AAATTAAAATTTTGTGATATTATATGAA
66 AAATTAAAATTCTATGATATTATATGAA
24741806 TTA
1 TTA
24741809 ACTTAAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
92 20 0.25
93 28 0.35
94 33 0.41
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (93 bp):
TTATAAAAAACATAAAATATATATTTAATAAAATTATATTATATAAAATAATTAAAATGGAAGTG
AAATTAAAATTCTATGATATTATATGAA
Found at i:24741760 original size:15 final size:17
Alignment explanation
Indices: 24741722--24741762 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
24741712 ATTATTAAAA
*
24741722 ATATAAACTATATATTT
1 ATATAAAATATATATTT
24741739 A-ATAAAAT-TAT-TTT
1 ATATAAAATATATATTT
24741753 ATATAAAATA
1 ATATAAAATA
24741763 ATTAAAATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 4 0.19
15 10 0.48
16 6 0.29
17 1 0.05
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAAAATATATATTT
Found at i:24741819 original size:93 final size:91
Alignment explanation
Indices: 24741638--24741808 Score: 218
Period size: 93 Copynumber: 1.9 Consensus size: 91
24741628 ACATAAATAA
* * * * * **
24741638 TATATATTTAATAAAATTAATTTATGAAATAATTGAAGTGGATGTGAATTTTAGTATTCTATGAT
1 TATATATTTAATAAAATTAATTTATAAAATAATTAAAATGGAAGTGAATATTAAAATTCTATGAT
24741703 ATTATATGAATTATTAAAAATATAAAC
66 ATTATATGAATTATT-AAAATATAAAC
* * *
24741730 TATATATTTAATAAAATTATTTTATATAAAATAATTAAAATGGAAGTGAA-ATTAAAATTTTGTG
1 TATATATTTAATAAAATTA-ATT-TATAAAATAATTAAAATGGAAGTGAATATTAAAATTCTATG
24741794 ATATTATATGAATTA
64 ATATTATATGAATTA
24741809 ACTTAAATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
92 19 0.28
93 26 0.39
94 22 0.33
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.43
Consensus pattern (91 bp):
TATATATTTAATAAAATTAATTTATAAAATAATTAAAATGGAAGTGAATATTAAAATTCTATGAT
ATTATATGAATTATTAAAATATAAAC
Found at i:24749714 original size:51 final size:49
Alignment explanation
Indices: 24749546--24749787 Score: 229
Period size: 49 Copynumber: 4.9 Consensus size: 49
24749536 TAGCCAAAGC
* * * *** *
24749546 TATCTGGTACGCATAGTAGCCTGCACTTTGTACTACACATACGACAAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
24749595 TATCCGGTACTCGTAGTAGCCTG--C-TAGTACTACACACATGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * *
24749642 CATCTGATACACGTAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
** * * * *
24749693 TATTGGGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
24749742 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
24749788 TCACAATAGA
Statistics
Matches: 154, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
46 15 0.10
47 22 0.14
49 62 0.40
50 20 0.13
51 35 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:24752350 original size:58 final size:57
Alignment explanation
Indices: 24752203--24752350 Score: 142
Period size: 56 Copynumber: 2.6 Consensus size: 57
24752193 TCGCATAACA
* * *
24752203 GGATTACCAGTCCAGGCTAAATCCTTTATATGACGTATGCTTAAAGAGTTCAATTAG
1 GGATTACCAGTCCAGGCTAAATCCTTTATATAACGCATGCTGAAAGAGTTCAATTAG
* * * * *
24752260 GG-TTACCAATCCAGGCTAAA-CCCTAATCATAACGCATGCTCGAGAG-GTATTATATT-G
1 GGATTACCAGTCCAGGCTAAATCCTTTAT-ATAACGCATGCT-GAAAGAGT-TCA-ATTAG
* *
24752317 GGATTACCTGTCCGGGCTAAATCCTTTATATAAC
1 GGATTACCAGTCCAGGCTAAATCCTTTATATAAC
24752351 AAGGTTAATG
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
55 5 0.07
56 29 0.40
57 10 0.14
58 23 0.32
59 5 0.07
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (57 bp):
GGATTACCAGTCCAGGCTAAATCCTTTATATAACGCATGCTGAAAGAGTTCAATTAG
Found at i:24752931 original size:21 final size:20
Alignment explanation
Indices: 24752889--24752934 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
24752879 AGCACATGTA
*
24752889 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATT
* *
24752909 TTCATCAAATTTTTACAACTT
1 TTCAT-AAAATTTTACAAATT
24752930 TTCAT
1 TTCAT
24752935 TTTAATCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.37, C:0.13, G:0.02, T:0.48
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:24754287 original size:28 final size:28
Alignment explanation
Indices: 24754255--24754317 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
24754245 AGTTGCATCC
24754255 ATACTAGGCTTCATACAATGCCATTTTA
1 ATACTAGGCTTCATACAATGCCATTTTA
*
24754283 ATACTATGCTTCATACAATGCCATTTTA
1 ATACTAGGCTTCATACAATGCCATTTTA
24754311 ATACTAG
1 ATACTAG
24754318 ATTGGTAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (28 bp):
ATACTAGGCTTCATACAATGCCATTTTA
Found at i:24754291 original size:16 final size:16
Alignment explanation
Indices: 24754267--24754314 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
24754257 ACTAGGCTTC
24754267 ATACAATGCCATTTTA
1 ATACAATGCCATTTTA
* *
24754283 ATACTATG-C---TTC
1 ATACAATGCCATTTTA
24754295 ATACAATGCCATTTTA
1 ATACAATGCCATTTTA
24754311 ATAC
1 ATAC
24754315 TAGATTGGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
12 9 0.38
13 1 0.04
15 1 0.04
16 13 0.54
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (16 bp):
ATACAATGCCATTTTA
Found at i:24756472 original size:48 final size:47
Alignment explanation
Indices: 24756334--24756513 Score: 197
Period size: 48 Copynumber: 3.9 Consensus size: 47
24756324 GGTTATGTGC
* * *
24756334 GATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCATCAATATGT
1 GATCCCATGTAAGACCATATCT-GGACATGGCATTGGCATCAATATGT
* ** * * *
24756382 AATTTCGTGTAAGACCATAGCTGGAC-T---ATCGGCATCAATATGT
1 GATCCCATGTAAGACCATATCTGGACATGGCATTGGCATCAATATGT
*
24756425 GATCCCATGTAAGACCATATCTAGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATATCT-GGACATGGCATTGGCATCAATATGT
* *
24756473 GATCCCATGTAAGACCATATCCGAGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATATCTG-GACATGGCATTGGCATC
24756514 CTACCATGTG
Statistics
Matches: 108, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
43 31 0.29
44 4 0.04
45 1 0.01
46 1 0.01
47 5 0.05
48 66 0.61
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (47 bp):
GATCCCATGTAAGACCATATCTGGACATGGCATTGGCATCAATATGT
Found at i:24786998 original size:66 final size:65
Alignment explanation
Indices: 24786851--24787006 Score: 159
Period size: 66 Copynumber: 2.4 Consensus size: 65
24786841 CAGTATGCTC
* * * *
24786851 CACACGGTCTCACACACGGGCATGTGATTGACCGTGTGGTACAAGTCAGTATACCCCCTAATTGG
1 CACACGGTCTAACACACGGGCATGTGAATGACCGTATGGCACAAGTCAGTATACCCCCTAATTGG
** * * * * * *
24786916 CACATAGCCTAACACACGGGCATGTGACATGGCCGTATTGCATAAGTCAGTATACCCTCTAATTT
1 CACACGGTCTAACACACGGGCATGTGA-ATGACCGTATGGCACAAGTCAGTATACCCCCTAATTG
*
24786981 T
65 G
** *
24786982 CACACGGTCTGGCACACGAGCATGT
1 CACACGGTCTAACACACGGGCATGT
24787007 CCTCTGTAAC
Statistics
Matches: 71, Mismatches: 19, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
65 23 0.32
66 48 0.68
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (65 bp):
CACACGGTCTAACACACGGGCATGTGAATGACCGTATGGCACAAGTCAGTATACCCCCTAATTGG
Found at i:24788539 original size:48 final size:48
Alignment explanation
Indices: 24788484--24788813 Score: 290
Period size: 48 Copynumber: 6.9 Consensus size: 48
24788474 GGTGAATTGT
* * *
24788484 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGC
* * * * * *
24788532 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTA-GTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATGTCAAGGC
* * * * * *
24788580 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTA-GTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATGTCAAGGC
* ** *
24788628 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGT-GTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCAAGGC
* * * ** * * *
24788676 CTATACCATGTCTCAGACATGGTCTTACACTACCGCACATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGC
* * * *
24788724 CGATGCCATGTACCAGACATGGTCTTACACTGGCTCTCATAT-AGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCA-AGGC
* * *
24788772 TGATGCCATGTCCCAGACATGGTTTTACACTGGCACACATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGT
24788814 TACCCAAATG
Statistics
Matches: 232, Mismatches: 45, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
47 2 0.01
48 228 0.98
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGC
Found at i:24788741 original size:144 final size:143
Alignment explanation
Indices: 24788481--24788813 Score: 404
Period size: 144 Copynumber: 2.3 Consensus size: 143
24788471 AAGGGTGAAT
* * *
24788481 TGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATACCATGTCCC
* * * *
24788546 AAACATGGTCTTACACTAGCTCTAGTCTCAATGTCGATGCCATGTCCCAGACACGGTCTTACACT
66 AAACATGGTCTTACACTAGCACTAGTATCAATGCCGATGCCATGTACCAGACACGGTCTTACACT
*
24788611 AGCTCT-AGTCTCAA
131 AGCTCTCA-TAT-AA
* * * * *
24788625 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGT-GTGGTCTATACCATGTCT
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATACCATGTCC
* *
24788689 CAGACATGGTCTTACACTACCGCAC-A-TATCAATGCCGATGCCATGTACCAGACATGGTCTTAC
65 CAAACATGGTCTTACACTA--GCACTAGTATCAATGCCGATGCCATGTACCAGACACGGTCTTAC
* *
24788752 ACTGGCTCTCATATAG
128 ACTAGCTCTCATATAA
* * *
24788768 TGGCTGATGCCATGTCCCAGACATGGTTTTACACTGGCACACATGT
1 TGTC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGT
24788814 TACCCAAATG
Statistics
Matches: 163, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
143 6 0.04
144 150 0.92
145 4 0.02
146 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (143 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATACCATGTCCC
AAACATGGTCTTACACTAGCACTAGTATCAATGCCGATGCCATGTACCAGACACGGTCTTACACT
AGCTCTCATATAA
Found at i:24788811 original size:96 final size:96
Alignment explanation
Indices: 24788485--24788811 Score: 367
Period size: 96 Copynumber: 3.4 Consensus size: 96
24788475 GTGAATTGTC
* * * * * * *
24788485 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAGAC
* * * *
24788550 ATGGTCTTACACTAGCTCT-AGTCTCAATGTC-
66 ATGGTCTTACACTGGCTCTCA-TAT-AGTGGCT
* * * *
24788581 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCTA-GTCTCAATGTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-ACATATCAATGCCGATGCCATGTCCCAGA
24788645 CATGGTCTTACACTGGCTCTCATAGT-GTGGTCT
65 CATGGTCTTACACTGGCTCTCATA-TAGTGG-CT
* * * * *
24788678 -ATACCATGTCTCAGACATGGTCTTACACTACCGCACATATCAATGCCGATGCCATGTACCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAGAC
24788742 ATGGTCTTACACTGGCTCTCATATAGTGGCT
66 ATGGTCTTACACTGGCTCTCATATAGTGGCT
* * *
24788773 GATGCCATGTCCCAGACATGGTTTTACACTGGCACACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
24788812 GTTACCCAAA
Statistics
Matches: 194, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
95 6 0.03
96 185 0.95
97 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCATATAGTGGCT
Found at i:24794208 original size:58 final size:56
Alignment explanation
Indices: 24794062--24794208 Score: 145
Period size: 56 Copynumber: 2.6 Consensus size: 56
24794052 CGTATAACAA
* * * *
24794062 GATTACCAGTCCAGGCTAAATCCTTTATATGATGTATGCTTAAAGAGTTCAATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTGAAAGAGTTCAATCAG
* * * * *
24794118 GGTTACCAGTCCAGGCTAAA-CCCTAATCATAACGTATGCTCGAGAG-GTATTATATCAG
1 GATTACCAGTCCAGGCTAAATCCTTTAT-ATAACGTATGCT-GAAAGAGT-TCA-ATCAG
* *
24794176 GATTACCCGTTCAGGCTAAATCCTTTATATAAC
1 GATTACCAGTCCAGGCTAAATCCTTTATATAAC
24794209 AAGGTTAATG
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
55 5 0.07
56 31 0.43
57 5 0.07
58 26 0.36
59 5 0.07
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (56 bp):
GATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTGAAAGAGTTCAATCAG
Found at i:24794780 original size:20 final size:20
Alignment explanation
Indices: 24794751--24794795 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
24794741 AACACATGTA
* *
24794751 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
24794771 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
24794791 TTCAT
1 TTCAT
24794796 TTTAGTCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:24798209 original size:46 final size:47
Alignment explanation
Indices: 24798103--24798224 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 47
24798093 TGTCTTCGAC
** * *
24798103 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
*
24798153 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
24798199 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
24798225 CTGTCCTGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 35 0.53
50 31 0.47
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:24798458 original size:15 final size:15
Alignment explanation
Indices: 24798438--24798473 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
24798428 TGTGACTAAA
24798438 CTTTACAATTTAGTC
1 CTTTACAATTTAGTC
24798453 CTTTACAATTTAGTC
1 CTTTACAATTTAGTC
24798468 CTTTAC
1 CTTTAC
24798474 TTTTTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (15 bp):
CTTTACAATTTAGTC
Found at i:24805889 original size:40 final size:41
Alignment explanation
Indices: 24805832--24806081 Score: 284
Period size: 40 Copynumber: 6.3 Consensus size: 41
24805822 CTAACGGGGT
* * *
24805832 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
24805872 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * *
24805912 TAAGTCTCGAAGGCATTGGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
24805952 TAAGTCCCGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAG-TGACTAATATCCGGGC
* * * *
24805992 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * *
24806032 TAAGACCCGAAGGC-CTTGTGCGAGTG-GTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
24806070 TAAATCCCGAAG
1 TAAGTCCCGAAG
24806082 ATACTTGGGT
Statistics
Matches: 186, Mismatches: 19, Indels: 12
0.86 0.09 0.06
Matches are distributed among these distances:
38 13 0.07
39 19 0.10
40 153 0.82
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:24808678 original size:27 final size:27
Alignment explanation
Indices: 24808647--24808824 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24808637 TAAATTGTAC
24808647 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24808674 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24808700 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24808728 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24808756 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24808783 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24808810 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24808825 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24808761 original size:82 final size:81
Alignment explanation
Indices: 24808648--24808803 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24808638 AAATTGTACA
* *
24808648 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24808712 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24808729 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24808794 TGCGAGTTGA
65 TGCGAATTGA
24808804 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24808815 original size:82 final size:81
Alignment explanation
Indices: 24808644--24808824 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24808634 GATTAAATTG
* *
24808644 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24808709 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24808725 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24808789 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24808807 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24808825 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24816751 original size:27 final size:27
Alignment explanation
Indices: 24816720--24816897 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24816710 TAAATTGTAC
24816720 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24816747 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24816773 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24816801 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24816829 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24816856 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24816883 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24816898 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24816834 original size:82 final size:81
Alignment explanation
Indices: 24816721--24816876 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24816711 AAATTGTACA
* *
24816721 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24816785 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24816802 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24816867 TGCGAGTTGA
65 TGCGAATTGA
24816877 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24816888 original size:82 final size:81
Alignment explanation
Indices: 24816717--24816897 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24816707 GATTAAATTG
* *
24816717 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24816782 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24816798 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24816862 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24816880 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24816898 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24821621 original size:13 final size:13
Alignment explanation
Indices: 24821603--24821640 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
24821593 TCTCTTCACT
24821603 TTAATTAATTTAG
1 TTAATTAATTTAG
*
24821616 TTAATTAGTTTAG
1 TTAATTAATTTAG
*
24821629 ATAATTAATTTA
1 TTAATTAATTTA
24821641 ATAAACAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (13 bp):
TTAATTAATTTAG
Found at i:24823911 original size:4 final size:5
Alignment explanation
Indices: 24823891--24823947 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
24823881 TCCTATTCAT
*
24823891 TTTTA TTTTA TTTTA -TTTA TTTTA TTCTTA TTTTTC TTTTGA TTTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTT-A -TTTTA
24823939 TTTTCA TTT
1 TTTT-A TTT
24823948 CAATTTTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 10 0.23
7 6 0.14
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:24823911 original size:14 final size:15
Alignment explanation
Indices: 24823892--24823923 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
24823882 CCTATTCATT
24823892 TTTATTTTATT-TTA
1 TTTATTTTATTCTTA
24823906 TTTATTTTATTCTTA
1 TTTATTTTATTCTTA
24823921 TTT
1 TTT
24823924 TTCTTTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTATTTTATTCTTA
Found at i:24823935 original size:12 final size:12
Alignment explanation
Indices: 24823886--24823947 Score: 55
Period size: 12 Copynumber: 5.6 Consensus size: 12
24823876 AATCCTCCTA
24823886 TTCATTTTTATT
1 TTCATTTTTATT
24823898 TT-A-TTTTA-T
1 TTCATTTTTATT
24823907 TT-A-TTTTATT
1 TTCATTTTTATT
*
24823917 CTT-ATTTTTCTT
1 -TTCATTTTTATT
*
24823929 TTGATTTTTATT
1 TTCATTTTTATT
24823941 TTCATTT
1 TTCATTT
24823948 CAATTTTCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 9 0.21
10 6 0.14
11 6 0.14
12 22 0.51
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (12 bp):
TTCATTTTTATT
Found at i:24826873 original size:13 final size:13
Alignment explanation
Indices: 24826857--24826889 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24826847 TTTAATTAAA
*
24826857 TTAGTTAATTAGT
1 TTAGATAATTAGT
24826870 TTAGATAATTAGT
1 TTAGATAATTAGT
24826883 TTA-ATAA
1 TTAGATAA
24826890 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:24832217 original size:40 final size:40
Alignment explanation
Indices: 24832157--24832367 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
24832147 ATTTGAATGA
* *
24832157 TATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
24832197 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
24832237 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
24832277 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
24832317 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
24832357 TATCC-GGCTAA
1 TATCCGGGCTAA
24832368 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.05
40 145 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:24833970 original size:34 final size:33
Alignment explanation
Indices: 24833917--24834011 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 33
24833907 ATGCATTGTG
24833917 GATACTGTACTGAAATGGGCTAAGGCCCACACT
1 GATACTGTACTGAAATGGGCTAAGGCCCACACT
* * *
24833950 GATACTGTTACTGTATTGGGCTAAGGCCCATACT
1 GATACTG-TACTGAAATGGGCTAAGGCCCACACT
* * * *
24833984 GATATTGCGACTGATATGGGCTTAGGCC
1 GATACTG-TACTGAAATGGGCTAAGGCC
24834012 TAGACTGTTC
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 7 0.14
34 44 0.86
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (33 bp):
GATACTGTACTGAAATGGGCTAAGGCCCACACT
Found at i:24835932 original size:27 final size:27
Alignment explanation
Indices: 24835913--24836473 Score: 719
Period size: 27 Copynumber: 20.8 Consensus size: 27
24835903 ATTACCAAAG
*
24835913 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24835940 TGCCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
24835967 TACCATCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24835994 TACCCTTGATTTACAGAATTACTCG-TT
1 TACCCTCGATTTACAGAATTAC-CGTTT
*
24836021 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24836048 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24836075 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
24836102 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
24836129 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
24836156 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
24836183 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
24836210 TACCCTCAATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24836237 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
24836264 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
24836291 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
24836318 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** *
24836345 TACCCTCGAATTACAGAATTGTCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
24836372 TACCCTCGATTTACAAAATTATAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
24836399 TACCATCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
24836426 TACCCTCGATTTACAGAATAACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24836453 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
24836474 TTAAATACCC
Statistics
Matches: 466, Mismatches: 66, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 464 1.00
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:24836545 original size:27 final size:27
Alignment explanation
Indices: 24836476--24836769 Score: 326
Period size: 27 Copynumber: 10.9 Consensus size: 27
24836466 CAAAATTATT
* *
24836476 AAATACCCCTATTGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
24836503 AGAT-CCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
* **
24836529 AAATACCCCTATAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
24836556 AAATACCCCTGAAGGGTAGAATTGCCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
24836583 AAATACCTCGGTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
*
24836610 AAATACCCATGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
24836637 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
24836664 AAATACCCCGGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
24836691 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
24836718 AAATACCCCTATATGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* * * *
24836745 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
24836770 CATTTTGCCC
Statistics
Matches: 225, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
26 20 0.09
27 204 0.91
28 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:24837007 original size:27 final size:26
Alignment explanation
Indices: 24836969--24837051 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
24836959 CGGAGGAAGC
24836969 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
24836996 GTTCTGTTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
24837022 GTATCTGGTGACTCTGTCACAATGTCT
1 GT-TCTGGTGGCTATGCCACAATATCT
24837049 GTT
1 GTT
24837052 GACCGATTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:24837529 original size:6 final size:6
Alignment explanation
Indices: 24837520--24837646 Score: 93
Period size: 6 Copynumber: 20.8 Consensus size: 6
24837510 TTGCATTCAT
* * * *
24837520 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
24837570 ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* *
24837618 ATTCTG -TTACTG ATTCTA ATTTTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
24837647 CATTTTGGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
5 7 0.07
6 78 0.82
7 7 0.07
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:24837548 original size:25 final size:25
Alignment explanation
Indices: 24837520--24837611 Score: 152
Period size: 25 Copynumber: 3.7 Consensus size: 25
24837510 TTGCATTCAT
24837520 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
24837545 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
24837570 ATTCTGATTCTGATTCTGTTA-CTA
1 ATTCTGATTCTGATTCTGTCACCTA
24837594 ATAT-TGATTCTGATTCTG
1 AT-TCTGATTCTGATTCTG
24837612 ATTCTGATTC
Statistics
Matches: 65, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
24 19 0.29
25 46 0.71
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:24840434 original size:31 final size:31
Alignment explanation
Indices: 24840399--24840459 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
24840389 GTGATAAAAA
24840399 AAGCAACTTTGAACGCATTTGCAGAGAAAGG
1 AAGCAACTTTGAACGCATTTGCAGAGAAAGG
*
24840430 AAGCAACTTTGAACGCGTTTGCAGAGAAAG
1 AAGCAACTTTGAACGCATTTGCAGAGAAAG
24840460 TGTGAAGGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (31 bp):
AAGCAACTTTGAACGCATTTGCAGAGAAAGG
Found at i:24849597 original size:27 final size:26
Alignment explanation
Indices: 24849541--24849597 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
24849531 CAACCTTAAC
* * *
24849541 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
24849567 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
24849594 CCTA
1 CCTA
24849598 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:24862591 original size:49 final size:49
Alignment explanation
Indices: 24862519--24862706 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
24862509 TGAGGTCACG
*
24862519 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
24862568 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
*
24862619 TGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * *
24862668 TGTGTAGTATTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
24862707 GCCTTGTCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 76 0.63
50 4 0.03
51 40 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:24862687 original size:100 final size:100
Alignment explanation
Indices: 24862514--24862706 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
24862504 TATTGTGAGG
* *
24862514 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
24862579 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
*
24862614 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTATT
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
24862679 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
24862707 GCCTTGTCTA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:24870056 original size:40 final size:40
Alignment explanation
Indices: 24870034--24870259 Score: 346
Period size: 40 Copynumber: 5.7 Consensus size: 40
24870024 ATGGTCACTA
* *
24870034 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAGCTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTC
*
24870074 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
24870114 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
* * *
24870154 GTAGAAATGCCTTCGGGACTTAACCCGAAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
* * *
24870194 GCACAAATGCCTTCGGGACTTAACCCGGAATTAATCACTA
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
*
24870234 GCACAAATGTCTTCGGGACTTAACCC
1 GCACAAATGCCTTCGGGACTTAACCC
24870260 CGTTATCATT
Statistics
Matches: 173, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 171 0.99
41 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
Found at i:24870100 original size:80 final size:79
Alignment explanation
Indices: 24869998--24870255 Score: 333
Period size: 80 Copynumber: 3.2 Consensus size: 79
24869988 TAACCACTTG
* * * * * *
24869998 CAAA-GCCATCGGGCCTTAGCCCGG-ATATGGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
24870061 G-ATATAGTAGCTCGCA
65 GAAT-TAGTA-CTCGCA
24870077 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
24870142 AATTAGTAACTCGTA
66 AATTAGT-ACTCGCA
* * *
24870157 GAAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
24870222 AATTAATCACTAGCA
66 AATTAGT-ACTCGCA
*
24870237 CAAATGTCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
24870256 ACCCCGTTAT
Statistics
Matches: 159, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 4 0.03
80 150 0.94
81 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTACTCGCA
Found at i:24877623 original size:27 final size:27
Alignment explanation
Indices: 24877590--24877794 Score: 288
Period size: 27 Copynumber: 7.6 Consensus size: 27
24877580 TAAATTGTGC
24877590 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
24877617 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
24877644 AGCACTAAGTGTGCGAA-TGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
24877670 AGCACTAAGTGTGC-AAGTTTGACTATGT
1 AGCACTAAGTGTGCGAA--TTGACTATGT
*
24877698 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
24877725 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
24877753 AGCACTAACTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
24877780 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24877795 GACTTAATAT
Statistics
Matches: 163, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
25 2 0.01
26 23 0.14
27 90 0.55
28 47 0.29
29 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:24877744 original size:55 final size:55
Alignment explanation
Indices: 24877590--24877794 Score: 324
Period size: 55 Copynumber: 3.8 Consensus size: 55
24877580 TAAATTGTGC
*
24877590 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
24877644 AGCACTAAGTGTGCGA-ATGACTATGTAGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
24877698 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
24877753 AGCACTAACTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
24877795 GACTTAATAT
Statistics
Matches: 140, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
53 25 0.18
54 42 0.30
55 73 0.52
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:24881650 original size:40 final size:40
Alignment explanation
Indices: 24881628--24881933 Score: 490
Period size: 40 Copynumber: 7.7 Consensus size: 40
24881618 ATGGTCACTA
*
24881628 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTC
* *
24881668 GCACAAATGCCTTCGGGACTTAGCTCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
24881708 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
24881748 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
24881788 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
* * *
24881828 GCACAAATGCCTTCGGAACTGAACCCAGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
* * *
24881868 GCACAAATGCCTTCGGGACTTAACCCAGAATTCA-TCACTA
1 GCACAAATGCCTTCGGGACTTAACCCGGAATT-AGTAACTC
*
24881908 GCACAAATGTCTTCGGGACTTAACCC
1 GCACAAATGCCTTCGGGACTTAACCC
24881934 CGTTATCATC
Statistics
Matches: 253, Mismatches: 11, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
40 250 0.99
41 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
Found at i:24884005 original size:42 final size:42
Alignment explanation
Indices: 24883897--24884027 Score: 115
Period size: 44 Copynumber: 3.0 Consensus size: 42
24883887 CATTGATATT
* * *
24883897 GATCTAAGATATCGTGTAAGACCATGTCTGGGACACAGGCCTC
1 GATCT-AGATTTCGTGTAAGACCATGTCTGGAACACAGGCATC
* * * *
24883940 GATTTGAGATTTACGTGTCAGACCATGTTTGGAACATAGGCATC
1 GATCT-AGATTT-CGTGTAAGACCATGTCTGGAACACAGGCATC
*
24883984 GTATCT-GATTTCGTGTAAGACCCA-GTCTGCG-ACAGAGGCATC
1 G-ATCTAGATTTCGTGTAAGA-CCATGTCTG-GAACACAGGCATC
24884026 GA
1 GA
24884028 AACTGAATTA
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 23 0.32
43 18 0.25
44 27 0.38
45 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (42 bp):
GATCTAGATTTCGTGTAAGACCATGTCTGGAACACAGGCATC
Found at i:24920625 original size:47 final size:48
Alignment explanation
Indices: 24920554--24920678 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 48
24920544 TAGGTAAAGT
* * *
24920554 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCA-CATC-TCAA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTTCAA
* **
24920601 GTCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTTGTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTTCAA
*
24920649 GCCGATG-CATGTCCCATACAT-GTCTTACAC
1 GCCGATGCCATGTCCCAAACATGGTCTTACAC
24920679 ACATGACTTA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 10 0.15
47 50 0.74
48 8 0.12
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTTCAA
Found at i:24920736 original size:46 final size:47
Alignment explanation
Indices: 24920679--24920837 Score: 146
Period size: 46 Copynumber: 3.4 Consensus size: 47
24920669 TGTCTTACAC
* * * *
24920679 ACATGACTTACACTGGCT-TATGTCTCGAGGCCGATG-CATGTCCTAG
1 ACATGTCTTACACTGGCTCT-CGTCTCAAGGCCGATGCCATGTCCCAG
* *
24920725 ACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAG
1 ACATGTCTTACACTGGCTCTCGTCTCAAGGCCGATGCCATGTCCCAG
* * * * *
24920772 ACATGGTCTTACACTGGCTGTCATAAT-ATGGCTGATG-CATGTCCCAG
1 ACAT-GTCTTACACTGGCTCTCGT-CTCAAGGCCGATGCCATGTCCCAG
* *
24920819 AGATGTCTTACACTAGCTC
1 ACATGTCTTACACTGGCTC
24920838 ACACACAAAT
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
46 42 0.45
47 27 0.29
48 23 0.25
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (47 bp):
ACATGTCTTACACTGGCTCTCGTCTCAAGGCCGATGCCATGTCCCAG
Found at i:24920813 original size:47 final size:46
Alignment explanation
Indices: 24920708--24920835 Score: 145
Period size: 47 Copynumber: 2.7 Consensus size: 46
24920698 ATGTCTCGAG
* * *
24920708 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTCGTCTAAAT
24920754 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-GTCATAATAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCGCTCGTC-TAA-AT
* *
24920801 GGCTGATGCATGTCCCAGAGATGTCTTACACTAGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGC
24920836 TCACACACAA
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
45 3 0.04
46 21 0.30
47 30 0.43
48 16 0.23
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTCGTCTAAAT
Found at i:24924546 original size:19 final size:19
Alignment explanation
Indices: 24924522--24924587 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
24924512 CATACAAGCA
*
24924522 GAAGTGCATCATGGCACAT
1 GAAGTGCATCATGGCACAC
**
24924541 GAAGTGCAT-ATTGATACAC
1 GAAGTGCATCA-TGGCACAC
*
24924560 GAAGTGCATCTTGGCACAC
1 GAAGTGCATCATGGCACAC
*
24924579 GAAATGCAT
1 GAAGTGCAT
24924588 AAACCCATAC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
18 1 0.03
19 37 0.97
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (19 bp):
GAAGTGCATCATGGCACAC
Found at i:24925331 original size:136 final size:138
Alignment explanation
Indices: 24925081--24925383 Score: 407
Period size: 136 Copynumber: 2.2 Consensus size: 138
24925071 AATCAAACAT
* * * * *
24925081 ATTTTTCATTTTATTCAACTGAGTCCCTATACGCAGGATACACATATCTTTTTTGTATTCAACAC
1 ATTTTTCAATTTATTCAATTTAGTCCTTATACGCAGGATACACATATCTTTTTTATATTCAACAC
* * * * **
24925146 TGGATAAAAATTTAATTTTACATTCTTTCGTTAGGGACCCTATACTTTTCATCTACAACATAATC
66 TGAATAAAAATCTAATTTCACATTCTTTCATTAGGGACAATATACTTTTCATCTACAACATAATC
24925211 TCATGG-A
131 TCATGGCA
*
24925218 ATTTTTCAATTTATTCAATTTAGTCCTTATACTCAGGATACACATATC-TTTTTATATTCAACA-
1 ATTTTTCAATTTATTCAATTTAGTCCTTATACGCAGGATACACATATCTTTTTTATATTCAACAC
* *
24925281 TCGAATTAAAATCTGATTTCACATTCTTTCATTA-GGAGCAATATACTTTTCATCTACAACATAA
66 T-GAATAAAAATCTAATTTCACATTCTTTCATTAGGGA-CAATATACTTTTCATCTACAACATAA
24925345 TCTCATGGCA
129 TCTCATGGCA
* * *
24925355 TTTTTTTAATTTCTTCAATTTAGTCCTTA
1 ATTTTTCAATTTATTCAATTTAGTCCTTA
24925384 ATGTTGCAAA
Statistics
Matches: 146, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
135 4 0.03
136 72 0.49
137 70 0.48
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (138 bp):
ATTTTTCAATTTATTCAATTTAGTCCTTATACGCAGGATACACATATCTTTTTTATATTCAACAC
TGAATAAAAATCTAATTTCACATTCTTTCATTAGGGACAATATACTTTTCATCTACAACATAATC
TCATGGCA
Found at i:24927662 original size:40 final size:40
Alignment explanation
Indices: 24927588--24927809 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
24927578 AACCCAAGTA
* *
24927588 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
24927627 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
24927667 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
24927707 CCTTTGGGACTTATCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
24927747 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
24927787 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
24927810 CATTCGAATA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 152 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:24929093 original size:11 final size:11
Alignment explanation
Indices: 24929077--24929101 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24929067 CCGTACCTAG
24929077 AAGAAAAAAAA
1 AAGAAAAAAAA
24929088 AAGAAAAAAAA
1 AAGAAAAAAAA
24929099 AAG
1 AAG
24929102 CTCTCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:24930467 original size:40 final size:40
Alignment explanation
Indices: 24930408--24930625 Score: 330
Period size: 40 Copynumber: 5.5 Consensus size: 40
24930398 CGGATGATAA
24930408 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
24930448 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
24930488 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
24930528 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * *
24930568 CCGGGCTAAGACCCGAAGGCATTTGAGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
24930608 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24930626 TACTTGGTTG
Statistics
Matches: 164, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 14 0.09
40 150 0.91
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:24933057 original size:248 final size:248
Alignment explanation
Indices: 24932586--24933084 Score: 539
Period size: 248 Copynumber: 2.0 Consensus size: 248
24932576 CTTCTCCTAC
*
24932586 TGTGACAGCCCTAATGTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAAAACCGAGTCATAAAA
1 TGTGACAGCCCAAATGTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAAAACCGAGTCATAAAA
* * * * * * * **
24932651 ATAATTAGCTGTCATGTTTGATGCTTATTTTATGTATATATGCGTGTGTGAAATTTTCATATTTG
66 ATAATTAGATGTCATATTTGATGCTTATTATATGTATACATGAGTATGTGAAAGTTTCATATTCC
** * * * * * *
24932716 AATTTTGTTAATTCTAGGTGAATTTTAGTAAATAGGACTTATGCGAGAAAATTTAGAAATGTGCT
131 AATTTTGCCAATTCTAGGAGAATATTAGTAAATAGGACTTATACGAGAAAATTGAGAAATATGAT
*
24932781 AGGCAAATGTAAAGTGGCCTAATAATGCATATTATAAAAATGATGGGTTTGCA
196 AGGCAAATGTAAAATGGCCTAATAATGCATATTATAAAAATGATGGGTTTGCA
*
24932834 TGTGACAGCCCAAAAT-TGACCCTAGTCGGGAAGTGGTTTCGGGACCACAAAACCGAGTCATAAA
1 TGTGACAGCCC-AAATGTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAAAACCGAGTCATAAA
* * * *
24932898 AATAATT-GATTTCCATATTCT-ATGCTTATTATGTGTGTACATGAGTATGTGGAAGTTTCAT-T
65 AATAATTAGATGT-CATATT-TGATGCTTATTATATGTATACATGAGTATGTGAAAGTTTCATAT
* * * *
24932960 CTCCAATTTTGCCAATTGC-ATGAGAA-ATTATTAAATAGGGA-TTGATATGAG-ACATGGTGA-
128 -TCCAATTTTGCCAATT-CTAGGAGAATATTAGTAAATA-GGACTT-ATACGAGAAAAT--TGAG
* * * * * * *
24933020 AAATATGATAGGCTAATTTAAAATGGTCTATTAATGCATGTTGTGAAAATGATGGGTTTGCA
187 AAATATGATAGGCAAATGTAAAATGGCCTAATAATGCATATTATAAAAATGATGGGTTTGCA
24933082 TGT
1 TGT
24933085 CAAATTACCC
Statistics
Matches: 207, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
247 18 0.09
248 182 0.88
249 7 0.03
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (248 bp):
TGTGACAGCCCAAATGTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAAAACCGAGTCATAAAA
ATAATTAGATGTCATATTTGATGCTTATTATATGTATACATGAGTATGTGAAAGTTTCATATTCC
AATTTTGCCAATTCTAGGAGAATATTAGTAAATAGGACTTATACGAGAAAATTGAGAAATATGAT
AGGCAAATGTAAAATGGCCTAATAATGCATATTATAAAAATGATGGGTTTGCA
Found at i:24934578 original size:40 final size:40
Alignment explanation
Indices: 24934433--24934654 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
24934423 TTGAATGCTG
* * *
24934433 TCCGGGCTAAGTCCCGAAGG--GTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
24934472 TCCGGACTAAAAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
24934512 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24934551 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24934591 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
24934632 -CAGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24934655 CGAACGAGGA
Statistics
Matches: 160, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 51 0.32
40 99 0.62
41 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24934674 original size:80 final size:80
Alignment explanation
Indices: 24934506--24934689 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
24934496 TGTGCGAGAT
* * * * *
24934506 ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCAGGGCTAAGTCCCGAAG
* ** *
24934570 GCATTTGTGCGAGTT
66 GCATTCGAACGAGTG
*
24934585 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CAGGGCTATGTCCCGAA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCAGGGCTAAGTCCCGAA
24934649 GGCATTCGAACGAG-G
65 GGCATTCGAACGAGTG
* * *
24934664 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
24934690 TACGTGATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 30 0.34
80 57 0.64
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCAGGGCTAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:24942503 original size:40 final size:40
Alignment explanation
Indices: 24942414--24942675 Score: 338
Period size: 40 Copynumber: 6.6 Consensus size: 40
24942404 TTGAATGCTG
* * *
24942414 TCCGGGCTAAGTCCCGAAGG--GTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
24942453 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
24942493 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24942532 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24942572 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24942612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24942653 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24942676 CGAACGAGGA
Statistics
Matches: 201, Mismatches: 15, Indels: 13
0.88 0.07 0.06
Matches are distributed among these distances:
39 52 0.26
40 139 0.69
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24942695 original size:120 final size:118
Alignment explanation
Indices: 24942466--24942710 Score: 314
Period size: 120 Copynumber: 2.1 Consensus size: 118
24942456 GGACTAAGAT
* *
24942466 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
* * * ** * *
24942531 ATCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCC-GGTTAAATC
* *
24942585 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA
* * *
24942650 TAA-CCGGGCTATGTCCCGAAGGCATTCGAACGAG-GAGCTATATCCGGTTAAATT
65 -AATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGTTAAATC
24942704 CCGAAGG
1 CCGAAGG
24942711 TACGTGATTT
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
119 50 0.46
120 57 0.52
121 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGTTAAATC
Found at i:24948682 original size:39 final size:40
Alignment explanation
Indices: 24948624--24948826 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
24948614 CGGATGATAA
* *
24948624 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
24948664 TCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
24948703 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
24948743 CCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTCCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
24948783 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
24948823 CCGG
1 CCGG
24948827 TTGAATTCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 33 0.23
40 108 0.77
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:24956833 original size:40 final size:40
Alignment explanation
Indices: 24956751--24956931 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
24956741 AACCCAAGTA
* *
24956751 CCTT-GGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
24956789 CCTTCAGGTCTTAGCCCGGATATAGTCAATAGCAACAAA-A
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGC-ACAAATG
*
24956829 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
24956869 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
24956909 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
24956932 CATTCGAATA
Statistics
Matches: 128, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 4 0.03
39 11 0.09
40 105 0.82
41 8 0.06
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:24959218 original size:21 final size:21
Alignment explanation
Indices: 24959189--24959228 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
24959179 TTAGAAATTA
* *
24959189 ATTTTATTTCTTTGAATTATT
1 ATTTAATTTATTTGAATTATT
*
24959210 ATTTAATTTATTTTAATTA
1 ATTTAATTTATTTGAATTA
24959229 AATAATTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (21 bp):
ATTTAATTTATTTGAATTATT
Found at i:24961609 original size:45 final size:45
Alignment explanation
Indices: 24961552--24961711 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 45
24961542 AATGAGAAAG
* * * * *
24961552 ACCATGGTTGAAAGATACCATGGCATTATACCTGGAACGAGA-AAT
1 ACCATAGTTGAAAGATACTATGGCATTATACCAGAAACGA-ATAAA
* *
24961597 ATCATAGTTGAAAGATACTATGGCACTATACCAGAAACGAATAAA
1 ACCATAGTTGAAAGATACTATGGCATTATACCAGAAACGAATAAA
* * * * * * * *
24961642 ACCATAGTTGAAAGATACTATGGCATGACATCGGTAATGAACAAG
1 ACCATAGTTGAAAGATACTATGGCATTATACCAGAAACGAATAAA
24961687 ACCATAGTTGAAAGATACTATGGCA
1 ACCATAGTTGAAAGATACTATGGCA
24961712 CAACTTCGGG
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
44 1 0.01
45 96 0.99
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (45 bp):
ACCATAGTTGAAAGATACTATGGCATTATACCAGAAACGAATAAA
Found at i:24961756 original size:46 final size:45
Alignment explanation
Indices: 24961542--24961756 Score: 164
Period size: 45 Copynumber: 4.8 Consensus size: 45
24961532 TGATTTGAGA
* * * ** * * *
24961542 AATGAGAAAGACCATGGTTGAAAGATACCATGGCATTATACCTGG
1 AATGATAAAGACCATAGTTGAAAGATACTATGGCACAACATCGGG
* * * * * * * * *
24961587 AACGAGAAATATCATAGTTGAAAGATACTATGGCACTATACCAGA
1 AATGATAAAGACCATAGTTGAAAGATACTATGGCACAACATCGGG
* ** *
24961632 AACGAATAAA-ACCATAGTTGAAAGATACTATGGCATGACATCGGT
1 AATG-ATAAAGACCATAGTTGAAAGATACTATGGCACAACATCGGG
*
24961677 AATGA-ACAAGACCATAGTTGAAAGATACTATGGCACAACTTCGGG
1 AATGATA-AAGACCATAGTTGAAAGATACTATGGCACAACATCGGG
* * *
24961722 AATGTATAAAGACCATGGTTGGAAGATACCATGGC
1 AATG-ATAAAGACCATAGTTGAAAGATACTATGGC
24961757 TTCCTTCAAA
Statistics
Matches: 141, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 107 0.76
46 29 0.21
47 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (45 bp):
AATGATAAAGACCATAGTTGAAAGATACTATGGCACAACATCGGG
Found at i:24969483 original size:24 final size:24
Alignment explanation
Indices: 24969447--24969517 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
24969437 CTGTCAAGAG
*
24969447 AGGATTTAAGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* *
24969471 AGGATTTTGGAGTTGATAAGCGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
24969495 AGGATTTAGGAGTAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
24969518 GGAAATCTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.35, C:0.01, G:0.35, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:24970227 original size:23 final size:23
Alignment explanation
Indices: 24970197--24970242 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
24970187 TAGCCCTAAG
24970197 GGGTTGTGATAATAGTATTATTT
1 GGGTTGTGATAATAGTATTATTT
24970220 GGGTTGTGATAATAGTATTATTT
1 GGGTTGTGATAATAGTATTATTT
24970243 TGGTAATAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (23 bp):
GGGTTGTGATAATAGTATTATTT
Found at i:24971025 original size:27 final size:26
Alignment explanation
Indices: 24970959--24971069 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
24970949 AGGAAGCGTC
* * *
24970959 CTGGTGGCTATGCCACAAATTATTTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
24970987 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
24971014 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
24971042 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
24971068 CT
1 CT
24971070 AGCAGCCATG
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 5 0.07
27 37 0.51
28 31 0.42
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:24971044 original size:55 final size:54
Alignment explanation
Indices: 24970959--24971069 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 54
24970949 AGGAAGCGTC
* *
24970959 CTGGTGGCTATGCCACAAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
24971014 CTGGTGGTTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
24971068 CT
1 CT
24971070 AGCAGCCATG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
54 17 0.35
55 32 0.65
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:25006525 original size:27 final size:28
Alignment explanation
Indices: 25006493--25006816 Score: 205
Period size: 27 Copynumber: 12.0 Consensus size: 28
25006483 GCGAAAAATC
25006493 TACAAA-CAGAGGGTATTTCAGTAATTT
1 TACAAATCAGAGGGTATTTCAGTAATTT
* * *
25006520 TGCAAACCA-ATGGTATTTCTA-TAATTTT
1 TACAAATCAGAGGGTATTTC-AGTAA-TTT
* *
25006548 TAGAAAGTCA-AGGGTATTTCTGTAATTT
1 TACAAA-TCAGAGGGTATTTCAGTAATTT
** **
25006576 TGTAAATCAG-GGGTATTTTTGTAATTT
1 TACAAATCAGAGGGTATTTCAGTAATTT
* * *
25006603 T-CTAAATTA-AGGATATTTTAGTAATTT
1 TAC-AAATCAGAGGGTATTTCAGTAATTT
* **
25006630 TCCAAATCAG-GGGTATTTTGGTAATTT
1 TACAAATCAGAGGGTATTTCAGTAATTT
* *
25006657 TACAAATTA-AGGGTATTTTAGTAATTT
1 TACAAATCAGAGGGTATTTCAGTAATTT
*
25006684 TACAAGTCAG-GGGTATTTCAGTAATTT
1 TACAAATCAGAGGGTATTTCAGTAATTT
* ** * **
25006711 TATAGGT-TGAGGGTATTTTGGTAATTT
1 TACAAATCAGAGGGTATTTCAGTAATTT
* *
25006738 TACAAACCAG-GGGTACTTT-GGTAATTT
1 TACAAATCAGAGGGTA-TTTCAGTAATTT
*
25006765 TACAAA-CTAG-GGGTATTTCGGTAATTT
1 TACAAATC-AGAGGGTATTTCAGTAATTT
** *
25006792 TGTAAATCA-AAGGTA-TTCAGTAATT
1 TACAAATCAGAGGGTATTTCAGTAATT
25006817 CTACCCTACA
Statistics
Matches: 241, Mismatches: 37, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
26 14 0.06
27 190 0.79
28 23 0.10
29 14 0.06
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (28 bp):
TACAAATCAGAGGGTATTTCAGTAATTT
Found at i:25006637 original size:54 final size:54
Alignment explanation
Indices: 25006557--25006792 Score: 253
Period size: 54 Copynumber: 4.4 Consensus size: 54
25006547 TTAGAAAGTC
** *
25006557 AAGGGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTTGTAATTTTCTAAATT
1 AAGGGTATTT-TAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTCTAAATT
* *
25006611 AAGGATATTTTAGTAATTTTCCAAATCAGGGGTATTTTGGTAATTTTAC-AAATT
1 AAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT-CTAAATT
* ** * **
25006665 AAGGGTATTTTAGTAATTTTACAAGTCAGGGGTATTTCAGTAATTTTATAGGTT
1 AAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTCTAAATT
* * * * *
25006719 GAGGGTATTTTGGTAATTTTACAAACCAGGGGTACTTTGGTAATTTTAC-AAACT
1 AAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT-CTAAATT
* **
25006773 AGGGGTATTTCGGTAATTTT
1 AAGGGTATTTTAGTAATTTT
25006793 GTAAATCAAA
Statistics
Matches: 152, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 150 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
AAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTCTAAATT
Found at i:25006807 original size:81 final size:81
Alignment explanation
Indices: 25006493--25006808 Score: 273
Period size: 81 Copynumber: 3.9 Consensus size: 81
25006483 GCGAAAAATC
* * * ** *
25006493 TACAAA-CAGAGGGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTA-TAATTTTTAGAAAGT
1 TACAAATCAG-GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTC-AGTAA-TTTTATAAA-T
25006556 CAAGGGTATTTCT-GTAATTT
62 CAAGGGTATTT-TGGTAATTT
** * * * * * ** *
25006576 TGTAAATCAGGGGTATTTTTGTAATTTT-CTAAATTAAGGATATTTTAGTAATTTTCCAAATCAG
1 TACAAATCAGGGGTATTTTAGTAATTTTAC-AAACTAGGGGTATTTCAGTAATTTTATAAATCAA
25006640 GGGTATTTTGGTAATTT
65 GGGTATTTTGGTAATTT
* * * ** **
25006657 TACAAATTAAGGGTATTTTAGTAATTTTAC-AAGTCAGGGGTATTTCAGTAATTTTATAGGTTGA
1 TACAAATCAGGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTCAGTAATTTTATAAATCAA
25006721 GGGTATTTTGGTAATTT
65 GGGTATTTTGGTAATTT
* * * * * *
25006738 TACAAACCAGGGGTACTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTGTAAATCAAA
1 TACAAATCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCAGTAATTTTATAAATCAAG
25006803 GGTATT
66 GGTATT
25006809 CAGTAATTCT
Statistics
Matches: 185, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
80 4 0.02
81 131 0.71
82 13 0.07
83 34 0.18
84 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
TACAAATCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCAGTAATTTTATAAATCAAG
GGTATTTTGGTAATTT
Found at i:25006833 original size:20 final size:20
Alignment explanation
Indices: 25006808--25006846 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
25006798 TCAAAGGTAT
25006808 TCAGTAATTCTACCCTACAA
1 TCAGTAATTCTACCCTACAA
25006828 TCAGTAATTCTACCCTACA
1 TCAGTAATTCTACCCTACA
25006847 GGTGCAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.31, G:0.05, T:0.31
Consensus pattern (20 bp):
TCAGTAATTCTACCCTACAA
Done.