Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 83 of 373
Found at i:26047632 original size:81 final size:81
Alignment explanation
Indices: 26047523--26047677 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
26047513 CTACCCTACA
* * **
26047523 AGGGTATTTCAGTAATTTTGTCAATCGAGGGTAAAACAGTAA-TTCTGTAAATCAAGGGTACTTT
1 AGGGTATTTCAATAATTTTGACAATCGAGGGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTT
26047587 GGTAATTTTATAAGTCG
65 GGTAATTTTATAAGTCG
* *** * *
26047604 AGGGTATTTCAATAATTTT-ACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTT
1 AGGGTATTTCAATAATTTTGACA-ATCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTT
26047668 GGTAATTTTA
65 GGTAATTTTA
26047678 CAAACTAAGG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 2 0.03
81 57 0.92
82 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTTGACAATCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTG
GTAATTTTATAAGTCG
Found at i:26047662 original size:27 final size:27
Alignment explanation
Indices: 26047631--26047891 Score: 360
Period size: 27 Copynumber: 9.7 Consensus size: 27
26047621 TTACAGGTCG
** * *
26047631 AGGGTATTTCAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26047658 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
26047685 AGGGTATTTTGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
26047712 GGGGTATTTTGGTAGTTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
26047739 AGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
26047766 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
26047793 AGCGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26047820 AGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
26047847 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
26047874 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
26047892 GGTAAAGAAA
Statistics
Matches: 204, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:26047689 original size:81 final size:80
Alignment explanation
Indices: 26047571--26047891 Score: 340
Period size: 81 Copynumber: 4.0 Consensus size: 80
26047561 GTAATTCTGT
* * * * * ** *
26047571 AAATCAAGGGTACTTTGGTAATTTTA-TAAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGG
1 AAATCAAGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTAATAATTTTACA-AACAAGGG
** *
26047635 TATTTCAGTAATTTCAC
64 TATTTTGGTAATTTTAC
* * *
26047652 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAATAATTTTACAAA-CAAGGGT
*
26047717 ATTTTGGTAGTTTTAC
65 ATTTTGGTAATTTTAC
* ** ** *
26047733 AAA-CTAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGCG
1 AAATC-AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAATAATTTTACAAA-CAAGGG
26047797 TATTTTGGTAATTTTAC
64 TATTTTGGTAATTTTAC
* * * * *
26047814 AAACCAAGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGT
1 AAATCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAATAATTTTACAAA-CAAGGGT
26047879 ATTTTGGTAATTT
65 ATTTTGGTAATTT
26047892 GGTAAAGAAA
Statistics
Matches: 205, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.00
81 200 0.98
82 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
AAATCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAATAATTTTACAAACAAGGGTA
TTTTGGTAATTTTAC
Found at i:26050664 original size:40 final size:40
Alignment explanation
Indices: 26050589--26050809 Score: 295
Period size: 40 Copynumber: 5.5 Consensus size: 40
26050579 CCCAAGTATC
* * *
26050589 CGGGATTTAG-CCGGATATAG-CAACTCGCGCAAATGCCTT
1 CGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTT
* **
26050628 CGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
26050668 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
*
26050708 CGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTT
* *
26050751 CGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
26050791 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
26050810 CATCCGAATA
Statistics
Matches: 162, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 9 0.06
40 116 0.72
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
Found at i:26050771 original size:83 final size:80
Alignment explanation
Indices: 26050589--26050809 Score: 295
Period size: 83 Copynumber: 2.7 Consensus size: 80
26050579 CCCAAGTATC
* * * *
26050589 CGGGATTTAG-CCGGATATAG-CAACTCGCGCAAATGCCTTCGGGTCTTAGCCCGGATATAGTCA
1 CGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCA
**
26050652 CTAGCATGAATGCCTT
65 CTAGCACAAATGCCTT
*
26050668 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAA
1 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-A
26050732 CTACTCGCACAAATGCCTT
65 CTA---GCACAAATGCCTT
* *
26050751 CGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26050810 CATCCGAATA
Statistics
Matches: 126, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
79 10 0.08
80 48 0.38
81 1 0.01
83 67 0.53
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAC
TAGCACAAATGCCTT
Found at i:26054533 original size:12 final size:12
Alignment explanation
Indices: 26054516--26054555 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 12
26054506 AAAATTAATC
26054516 AAAATTTATTAT
1 AAAATTTATTAT
*
26054528 AAAA-TTAATA-
1 AAAATTTATTAT
26054538 AAAATTTATTAT
1 AAAATTTATTAT
26054550 AAAATT
1 AAAATT
26054556 AAGTAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AAAATTTATTAT
Found at i:26054533 original size:22 final size:21
Alignment explanation
Indices: 26054506--26054565 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 21
26054496 AAAAATGATC
26054506 AAAATTAATCAAAATTTATTAT
1 AAAATTAAT-AAAATTTATTAT
26054528 AAAATTAATAAAAATTTATTAT
1 AAAATTAAT-AAAATTTATTAT
26054550 AAAATTAAGTAAAATT
1 AAAATTAA-TAAAATT
26054566 CAAACTACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 35 0.97
23 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
AAAATTAATAAAATTTATTAT
Found at i:26056884 original size:42 final size:42
Alignment explanation
Indices: 26056796--26056886 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
26056786 CATGGGTTTT
* * * *
26056796 CACACGGCCAAGCACATGCCCATGTCGCTGGCATGTGTCCTT
1 CACACGGCCAAACACACGCCCATGTCGCTGGCATGTGCCCTC
*
26056838 CACACGGCCAAAACACACGCCCGTGT-GCTAGGC-TGTGCCCTC
1 CACACGGCC-AAACACACGCCCATGTCGCT-GGCATGTGCCCTC
26056880 CACACGG
1 CACACGG
26056887 TTGAGACACA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 26 0.62
43 16 0.38
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.16
Consensus pattern (42 bp):
CACACGGCCAAACACACGCCCATGTCGCTGGCATGTGCCCTC
Found at i:26065567 original size:23 final size:24
Alignment explanation
Indices: 26065514--26065583 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 24
26065504 AATCTCCTCT
* *
26065514 TGAGCTGATGGACAGTAAGCTCTAT
1 TGAGCTGA-GAACAGTAAGCTCTAC
26065539 TGAGCTGA-AACAGTAAGCTCTGAC
1 TGAGCTGAGAACAGTAAGCTCT-AC
* *
26065563 T-AGCTGAGAATAGTAATCTCT
1 TGAGCTGAGAACAGTAAGCTCT
26065584 TACGAGTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 18 0.46
24 13 0.33
25 8 0.21
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (24 bp):
TGAGCTGAGAACAGTAAGCTCTAC
Found at i:26074347 original size:43 final size:43
Alignment explanation
Indices: 26074286--26074367 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
26074276 CAGGTATCGT
26074286 ATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGCTCGC
1 ATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGCTCGC
* *
26074329 ATCCATAATGAACTCAGACCACTCAACAAGCTTGGATGC
1 ATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGC
26074368 CACATATTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (43 bp):
ATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGCTCGC
Found at i:26076965 original size:42 final size:41
Alignment explanation
Indices: 26076918--26077005 Score: 99
Period size: 41 Copynumber: 2.1 Consensus size: 41
26076908 GGATTACAAG
* *
26076918 GATATGATATTCGTCTAAGACCAT-GTCTGGGAC-ATTGGCATT
1 GATATGAGATT-GTCTAAGACCATAG-CTGGG-CTATTGGCATC
* *
26076960 GATATGAGATTTTGTAAGACCATAGCTGGGCTATTGGCATC
1 GATATGAGATTGTCTAAGACCATAGCTGGGCTATTGGCATC
26077001 GATAT
1 GATAT
26077006 ACTATAACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 1 0.03
41 28 0.70
42 11 0.28
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (41 bp):
GATATGAGATTGTCTAAGACCATAGCTGGGCTATTGGCATC
Found at i:26077993 original size:61 final size:61
Alignment explanation
Indices: 26077919--26078040 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
26077909 TGGTACATTT
26077919 TGATTATGATGAATTGGTATATTTTGTGACACGAATTAGATGATAGTATGGTGAGAACTTA
1 TGATTATGATGAATTGGTATATTTTGTGACACGAATTAGATGATAGTATGGTGAGAACTTA
26077980 TGATTATGATGAATTGGTATATTTTGTGACACGAATTAGATGATAGTATGGTGAGAACTTA
1 TGATTATGATGAATTGGTATATTTTGTGACACGAATTAGATGATAGTATGGTGAGAACTTA
26078041 CATATGGACG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (61 bp):
TGATTATGATGAATTGGTATATTTTGTGACACGAATTAGATGATAGTATGGTGAGAACTTA
Found at i:26089380 original size:13 final size:11
Alignment explanation
Indices: 26089352--26089394 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
26089342 AGTTAAAAAT
26089352 TATTTTATTAA
1 TATTTTATTAA
26089363 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
26089376 TA-TTTATTAT
1 TATTTTATTAA
26089386 TATTTTATT
1 TATTTTATT
26089395 TCGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:26091173 original size:26 final size:26
Alignment explanation
Indices: 26091136--26091241 Score: 176
Period size: 26 Copynumber: 4.1 Consensus size: 26
26091126 GTACAAATTA
*
26091136 ATAATGGGTTAGGTAAATGTTCTATG
1 ATAATGGGTTAGGTAAATGTTCCATG
* *
26091162 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
26091188 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
*
26091214 ATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
26091240 AT
1 AT
26091242 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:26092795 original size:40 final size:40
Alignment explanation
Indices: 26092750--26093134 Score: 646
Period size: 40 Copynumber: 9.6 Consensus size: 40
26092740 CAAGCTCAAT
* * * * *
26092750 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26092790 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
26092830 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
26092870 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26092910 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26092950 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26092990 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26093030 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26093070 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26093110 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
26093135 CATTCAAATG
Statistics
Matches: 328, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 325 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:26100455 original size:40 final size:40
Alignment explanation
Indices: 26100395--26100819 Score: 726
Period size: 40 Copynumber: 10.6 Consensus size: 40
26100385 CAAGCTCAAT
* * * * *
26100395 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26100435 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
26100475 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
26100515 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26100555 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26100595 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
26100635 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26100675 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26100715 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26100755 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
26100795 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
26100820 CATTCAAATG
Statistics
Matches: 368, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 365 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:26117237 original size:17 final size:17
Alignment explanation
Indices: 26117215--26117251 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26117205 TCACCAGAGG
26117215 GGTATACTGC-TCATTTT
1 GGTATACT-CTTCATTTT
26117232 GGTATACTCTTCATTTT
1 GGTATACTCTTCATTTT
26117249 GGT
1 GGT
26117252 TTTGTGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.49
Consensus pattern (17 bp):
GGTATACTCTTCATTTT
Found at i:26118695 original size:26 final size:26
Alignment explanation
Indices: 26118659--26118709 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26118649 GGAAGTATAA
*
26118659 TGTTGCTGGCAGCTTTGCTACGATAC
1 TGTTACTGGCAGCTTTGCTACGATAC
*
26118685 TGTTACTGGCAGCTTTGCTGCGATA
1 TGTTACTGGCAGCTTTGCTACGATA
26118710 TTGGTGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.22, G:0.27, T:0.35
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGCTACGATAC
Found at i:26118856 original size:28 final size:28
Alignment explanation
Indices: 26118816--26118871 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26118806 ATTGTACTGA
26118816 TATTGTATTGGGCTAAGGCCCACATTGT
1 TATTGTATTGGGCTAAGGCCCACATTGT
26118844 TATTGTATTGGGCTAAGGCCCACATTGT
1 TATTGTATTGGGCTAAGGCCCACATTGT
26118872 ACTGTTACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (28 bp):
TATTGTATTGGGCTAAGGCCCACATTGT
Found at i:26118878 original size:33 final size:33
Alignment explanation
Indices: 26118804--26118878 Score: 106
Period size: 28 Copynumber: 2.4 Consensus size: 33
26118794 TTGCATTACT
*
26118804 ACATTGTACTGATATTGTATTGGGCTAAGGCCC
1 ACATTGTACTGTTATTGTATTGGGCTAAGGCCC
26118837 ACA---T--TGTTATTGTATTGGGCTAAGGCCC
1 ACATTGTACTGTTATTGTATTGGGCTAAGGCCC
26118865 ACATTGTACTGTTA
1 ACATTGTACTGTTA
26118879 CTGAATAGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
28 26 0.72
30 1 0.03
31 1 0.03
33 8 0.22
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (33 bp):
ACATTGTACTGTTATTGTATTGGGCTAAGGCCC
Found at i:26125478 original size:40 final size:40
Alignment explanation
Indices: 26125380--26125548 Score: 225
Period size: 39 Copynumber: 4.3 Consensus size: 40
26125370 TCCTCGTTCA
* * * *
26125380 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
26125419 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
26125459 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
26125499 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
26125538 AAGGCCTTCGG
1 AATGCCTTCGG
26125549 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
39 69 0.59
40 48 0.41
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:26125481 original size:79 final size:79
Alignment explanation
Indices: 26125378--26125548 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 79
26125368 GCTCCTCGTT
* * *
26125378 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTC-GGACATAACCCGG
26125442 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * * *
26125457 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGACATAACCCGGA
** *
26125522 TTTAGTATCTCGCA
66 TTTAACAACTCGCA
*
26125536 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
26125549 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 70 0.89
80 9 0.11
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGACATAACCCGGA
TTTAACAACTCGCA
Found at i:26125549 original size:39 final size:40
Alignment explanation
Indices: 26125378--26125601 Score: 231
Period size: 40 Copynumber: 5.7 Consensus size: 40
26125368 GCTCCTCGTT
* * * * *
26125378 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
26125418 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
26125457 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
26125497 CGAATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* ** * * * *
26125536 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
26125577 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26125602 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 72 0.45
40 78 0.48
41 11 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:26125561 original size:79 final size:79
Alignment explanation
Indices: 26125378--26125601 Score: 218
Period size: 79 Copynumber: 2.8 Consensus size: 79
26125368 GCTCCTCGTT
* * * * *
26125378 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
26125443 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * * *
26125457 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTC-GGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
** *
26125521 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
** * * * * * * *
26125536 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACAATGCCTTCGGGACATAACCCG
26125600 GA
64 GA
26125602 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
78 3 0.03
79 92 0.77
80 25 0.21
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
TTTAACAACTCGCA
Found at i:26125610 original size:41 final size:41
Alignment explanation
Indices: 26125533--26125610 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
26125523 TTAGTATCTC
* * *
26125533 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
26125574 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
26125611 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:26133339 original size:40 final size:39
Alignment explanation
Indices: 26133241--26133463 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
26133231 TCCTCGTTCA
* * * * *
26133241 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
26133280 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
26133319 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
26133359 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
26133399 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
26133440 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26133464 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:26133463 original size:120 final size:119
Alignment explanation
Indices: 26133241--26133463 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
26133231 TCCTCGTTCA
* * * *
26133241 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
26133306 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
26133360 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
26133424 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
26133464 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26135868 original size:21 final size:21
Alignment explanation
Indices: 26135844--26135884 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26135834 GGAGTTTGTT
*
26135844 TTTTATGTTAATTAAAGTTTC
1 TTTTATGTTAAGTAAAGTTTC
* *
26135865 TTTTATTTTAAGTAGAGTTT
1 TTTTATGTTAAGTAAAGTTT
26135885 TCAATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.02, G:0.12, T:0.59
Consensus pattern (21 bp):
TTTTATGTTAAGTAAAGTTTC
Found at i:26141282 original size:14 final size:15
Alignment explanation
Indices: 26141255--26141283 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26141245 AATTTTATGA
26141255 ATTTCATGATGTGTT
1 ATTTCATGATGTGTT
26141270 ATTTCAT-ATGTGTT
1 ATTTCATGATGTGTT
26141284 GATGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.07, G:0.17, T:0.55
Consensus pattern (15 bp):
ATTTCATGATGTGTT
Found at i:26141476 original size:50 final size:51
Alignment explanation
Indices: 26141399--26141527 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
26141389 GACCATGGCA
26141399 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAA-TG
* *
26141450 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGATAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATG
* * *
26141500 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
26141528 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATG
Found at i:26141541 original size:31 final size:31
Alignment explanation
Indices: 26141503--26141682 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
26141493 ATAAATGACA
26141503 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
26141534 AGTGAAAAGTGGTAGCTTCCGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
26141565 AGTGAAAAGTGGTAG-TTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CAGCTACCTGATC
* * *
26141596 AGTGAAAAGTGGTAGGTCCAGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* * *
26141627 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
26141658 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
26141683 AAGTGACAAG
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.01
31 133 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:26141777 original size:47 final size:48
Alignment explanation
Indices: 26141708--26141871 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 48
26141698 AGTGATTTCC
* *
26141708 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTAC-T
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
* * *
26141755 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCAT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
* * *
26141803 G--TAAGACCATAGCTGGGCTATGGCATC-----GATATATGA-ATAT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
* * *
26141843 GTGTAAGACCATAGCTGGGCTATGGCATC
1 GTATAAGACCATATCTGGGATATGGCATC
26141872 ATTATGTGAA
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
40 3 0.03
41 8 0.08
42 26 0.25
46 24 0.23
47 41 0.39
48 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (48 bp):
GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
Found at i:26141859 original size:42 final size:43
Alignment explanation
Indices: 26141802--26141915 Score: 169
Period size: 42 Copynumber: 2.7 Consensus size: 43
26141792 ATGTGATTCA
*
26141802 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
*
26141844 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
* **
26141886 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
26141916 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
Found at i:26148833 original size:50 final size:50
Alignment explanation
Indices: 26148710--26149037 Score: 273
Period size: 50 Copynumber: 6.5 Consensus size: 50
26148700 TTAGGTCCTG
* * * * * * *
26148710 TGTGTAGCACTAAGTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGGTCACA
* * *
26148761 TGTATAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACA
* * * * *
26148811 TGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGAT-TTATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGT-TAGGTCACA
* * * * * ** * * *
26148861 TGTGTAGTACTAAGTTCAAGCTACTATGCGTACCCA-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGAT-GGTTAGGTCACA
* * * * * * *
26148912 TATGTAGTACTAAGTGTAGGCTACTACGTGTATCAGACGGATAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACA
* * * * *
26148962 TGTGTAGTAATAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACA
26149012 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26149038 TGCATACCAG
Statistics
Matches: 217, Mismatches: 55, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
49 1 0.00
50 150 0.69
51 65 0.30
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACA
Found at i:26148843 original size:101 final size:98
Alignment explanation
Indices: 26148710--26149037 Score: 280
Period size: 101 Copynumber: 3.3 Consensus size: 98
26148700 TTAGGTCCTG
* * * * *
26148710 TGTGTAGCACTAAGTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTTTAG-TCACGTGTGTAGTACTAAG
* *
26148775 TGCAGGCTACTACATGTATCAGATGGTTAGGTCACA
64 TGCAGGCTACTACGTGTA-CAGATAGTTAGGTCACA
* * * * *
26148811 TGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGAT-TTATAGGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTT-TA-GTCACGTGTGTAGTACTAAG
* * * * ** * * * *
26148875 TTCAAGCTACTATGCGTACCCATTAACTTCGATCACG
64 TGCAGGCTACTACGTGTACAGA-T-AGTTAGGTCACA
* * * * * * *
26148912 TATGTAGTACTAAGTGTAGGCTACTACGTGTATCAGACGGATAAGTCACGTGTGTAGTAATAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTTAGTCACGTGTGTAGTACTAAGT
* * *
26148977 GCAGGCTACTACGTGTACTAGATTGATAGGTCGCA
65 GCAGGCTACTACGTGTAC-AGATAGTTAGGTCACA
26149012 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26149038 TGCATACCAG
Statistics
Matches: 174, Mismatches: 46, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
99 4 0.02
100 60 0.34
101 107 0.61
102 2 0.01
103 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTTAGTCACGTGTGTAGTACTAAGTG
CAGGCTACTACGTGTACAGATAGTTAGGTCACA
Found at i:26148933 original size:151 final size:151
Alignment explanation
Indices: 26148710--26149045 Score: 467
Period size: 151 Copynumber: 2.2 Consensus size: 151
26148700 TTAGGTCCTG
* * ** *
26148710 TGTGTAGCACTAAGTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTATATAGTACTAAG
* * * * *
26148775 TGCAGGCTACTACATGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACAT
66 TGCAGGCTACTACATGTATCAGACGGATAAGTCACATGTGTAGTAATAAGTGCAGGCTACTACAT
* *
26148840 GTACCGGATTTATAGGTCGCA
131 GTACCAGATTGATAGGTCGCA
* * *
26148861 TGTGTAGTACTAAGTTCAAGCTACTATGCGTACCC-ATTAACTTCGATCACGTATGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-TAACTTCGATCACGTATATAGTACTAA
* * * *
26148925 GTGTAGGCTACTACGTGTATCAGACGGATAAGTCACGTGTGTAGTAATAAGTGCAGGCTACTACG
65 GTGCAGGCTACTACATGTATCAGACGGATAAGTCACATGTGTAGTAATAAGTGCAGGCTACTACA
*
26148990 TGTACTAGATTGATAGGTCGCA
130 TGTACCAGATTGATAGGTCGCA
*
26149012 TGTGTAGTACTAAGTGCAGGCTACTATGCATACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
26149046 AGAGAGCTTT
Statistics
Matches: 161, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
150 1 0.01
151 160 0.99
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTATATAGTACTAAG
TGCAGGCTACTACATGTATCAGACGGATAAGTCACATGTGTAGTAATAAGTGCAGGCTACTACAT
GTACCAGATTGATAGGTCGCA
Found at i:26149272 original size:16 final size:16
Alignment explanation
Indices: 26149251--26149282 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26149241 ATGGAGTAAG
26149251 TGAAATTATGTAAAAA
1 TGAAATTATGTAAAAA
*
26149267 TGAAATTTTGTAAAAA
1 TGAAATTATGTAAAAA
26149283 AATAGTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.34
Consensus pattern (16 bp):
TGAAATTATGTAAAAA
Found at i:26149901 original size:180 final size:180
Alignment explanation
Indices: 26149606--26149964 Score: 506
Period size: 180 Copynumber: 2.0 Consensus size: 180
26149596 TCCGAGATCT
* * *
26149606 GTACCATGAGATAAATATTTTTTACTGAAGAAAGATCGGAACTGTCAGACAGTGAAACAGGGTAT
1 GTACCATGAGATAAATAATTTTTACTGAAGAAAGATCGGAACTATCAGACAGTGAAACAGGGTAA
* * * *
26149671 ATTTAATGAATAAATTGTACTAATTGGATAAACAAAAATTTTTTAAAATTTTATTA-TAACAATA
66 ATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAATTTT-TTAGTAACAATA
* *
26149735 TATATGAGTCTAGTTTCTGGGAAAATTAGCGGTTCTTAATTTGGA-TTCTC
130 TATATGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTTGGAGTTCTC
* * * * ** *
26149785 GTACTATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTACTGAAGAAAGATCGGAACTATCAGACAGTGAAACA-GGGTA
* * *
26149850 AATTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTGAAAATTTTTTAGTTAGAATA
65 AATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAATTTTTTAGTAACAATA
*
26149915 TATGTGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTTGGAGTTCT
130 TATATGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTTGGAGTTCT
26149965 GTAGATCCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
179 53 0.34
180 100 0.64
181 4 0.03
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.35
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTACTGAAGAAAGATCGGAACTATCAGACAGTGAAACAGGGTAA
ATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAATTTTTTAGTAACAATAT
ATATGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTTGGAGTTCTC
Found at i:26153295 original size:42 final size:42
Alignment explanation
Indices: 26153188--26153297 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
26153178 TCGTTTCAAT
* * * ** * *
26153188 GCCATATCCCCGATATGGTCTTACATGAAATGTCATATCGAT
1 GCCATATCCTCGATATGGTCTTATACGAAATCACATACCGAG
* * *
26153230 GCCATGTCCTCGACATGGTCTTATACGAAGTCACATACCGAG
1 GCCATATCCTCGATATGGTCTTATACGAAATCACATACCGAG
*
26153272 GCCATATCCTGGATATGGTCTTATAC
1 GCCATATCCTCGATATGGTCTTATAC
26153298 AGAATCTTAA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (42 bp):
GCCATATCCTCGATATGGTCTTATACGAAATCACATACCGAG
Found at i:26158369 original size:43 final size:43
Alignment explanation
Indices: 26158306--26158391 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
26158296 TATGGGATAC
*
26158306 CGATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAGT-GGCAT
1 CGATATGTGGTTACGAGTAAGACCAC-GTCTGGGAC-GTAGGCAT
26158349 CGATATGTGGTTAC-ATGTAAGACCACGTCTGGGACGTAGGCAT
1 CGATATGTGGTTACGA-GTAAGACCACGTCTGGGACGTAGGCAT
26158392 TGTACGATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCACGTCTGGGACGTAGGCAT
Found at i:26159498 original size:13 final size:13
Alignment explanation
Indices: 26159480--26159506 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26159470 TGATAAGTGG
26159480 AATATAAATTGTA
1 AATATAAATTGTA
26159493 AATATAAATTGTA
1 AATATAAATTGTA
26159506 A
1 A
26159507 GTATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (13 bp):
AATATAAATTGTA
Found at i:26185981 original size:46 final size:45
Alignment explanation
Indices: 26185913--26186046 Score: 155
Period size: 46 Copynumber: 2.9 Consensus size: 45
26185903 TATATCCCGA
* * *
26185913 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T
1 GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTC--AT-AAGT
*
26185960 -GCCGATGCATGTCCTATACATGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTCATAA-GT
* * *
26186005 GGCCGATGCATATCCTAGACATGTCTTACACTGGCTCACATA
1 GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTCATA
26186047 CCACCCAATG
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 73 0.95
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTCATAAGT
Found at i:26195118 original size:49 final size:49
Alignment explanation
Indices: 26195041--26195211 Score: 161
Period size: 49 Copynumber: 3.5 Consensus size: 49
26195031 TGTTAGGTGT
* *
26195041 CAGTTTAAGACCTATCTGGGACATGGCATCGACAC-TGATAAATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTTGATAAATGAAAGC
* * * * *
26195090 CAGTGTAAGACCTATCTAGGACATGGCATTGGCCTTGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAAATGAAAGC
* * * * **
26195139 CAGTGTAAGACCTGTCTGGGACACGGCATC-AACTT--TAATGTGCTAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAA-ATGAAAGC
*
26195186 CAGTGTAAGACCATGTCTGGGACATG
1 CAGTGTAAGACC-TATCTGGGACATG
26195212 ACGTCGATAT
Statistics
Matches: 100, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
46 2 0.02
47 16 0.16
48 16 0.16
49 66 0.66
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAAATGAAAGC
Found at i:26196421 original size:21 final size:22
Alignment explanation
Indices: 26196382--26196422 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
26196372 TTGAATTGGT
26196382 CACACGGGCGTGCTGCCCCTCC
1 CACACGGGCGTGCTGCCCCTCC
26196404 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGCTGCCCCT
26196423 GTAGCTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.46, G:0.29, T:0.15
Consensus pattern (22 bp):
CACACGGGCGTGCTGCCCCTCC
Found at i:26209416 original size:20 final size:18
Alignment explanation
Indices: 26209382--26209418 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
26209372 CCTTAGCCTA
26209382 TAACAGTATCAGTAGCAG
1 TAACAGTATCAGTAGCAG
26209400 TAACAGTTATGCAGTAGCA
1 TAACAG-TAT-CAGTAGCA
26209419 AAATCCTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 3 0.18
20 8 0.47
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (18 bp):
TAACAGTATCAGTAGCAG
Found at i:26218814 original size:3 final size:3
Alignment explanation
Indices: 26218806--26218836 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26218796 TTGCATATAC
26218806 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
26218837 GTTTTAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:26221509 original size:18 final size:19
Alignment explanation
Indices: 26221486--26221525 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
26221476 TAATACCTAT
* *
26221486 TAATATTAACA-TTACAAA
1 TAATATAAACAGTAACAAA
26221504 TAATATAAACAGTAACAAA
1 TAATATAAACAGTAACAAA
26221523 TAA
1 TAA
26221526 AAGTGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.28
Consensus pattern (19 bp):
TAATATAAACAGTAACAAA
Found at i:26224252 original size:156 final size:157
Alignment explanation
Indices: 26224010--26224381 Score: 522
Period size: 156 Copynumber: 2.4 Consensus size: 157
26224000 GCACAGTAGG
* * * *
26224010 GCACGATTCTTCGAATTTCTAAACATCGAACATTGCC-TCATTTT-AGAA--TTTAGAGAACATG
1 GCACGATTCCTCGAATTGCCAAACATCGAACATTGCCTTCATTTTAAGAATTTTTAAAGAACATG
* * *
26224071 AGTGAAATTCTAAAGGGATATTCGATTATTTTGAATAAACGGGAAATTGCAACCCAGCACGATAG
66 AGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAG
* *
26224136 GGCATGATTCCCCGAATTGCCAAACA-
131 GGCACGATTCCCCAAATTGCCAAACAC
* * *
26224162 GCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAG-ACAT
1 GCACGATTCCTCGAATTGCCAAACATCGAACATTGCCTTCATTTT-AAGAATTTTTAAAGAACAT
*
26224226 GAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATA
65 GAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATA
*
26224291 GGGCACGATTCTCCAAATTGCCAAACATC
130 GGGCACGATTCCCCAAATTGCCAAACA-C
26224320 GAACAACGATTCCTCGAATTGCCAAACATCGAACATTGCCTTCATTTTTAAGAATTTTTAAA
1 G--C-ACGATTCCTCGAATTGCCAAACATCGAACATTGCCTTCA-TTTTAAGAATTTTTAAA
26224382 TGAATAATTA
Statistics
Matches: 192, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
152 32 0.17
153 6 0.03
155 4 0.02
156 89 0.46
157 6 0.03
158 1 0.01
160 1 0.01
161 49 0.26
162 4 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (157 bp):
GCACGATTCCTCGAATTGCCAAACATCGAACATTGCCTTCATTTTAAGAATTTTTAAAGAACATG
AGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAG
GGCACGATTCCCCAAATTGCCAAACAC
Found at i:26224331 original size:30 final size:30
Alignment explanation
Indices: 26224295--26224354 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26224285 ACGATAGGGC
26224295 ACGATT-CTCCAAATTGCCAAACATCGAACA
1 ACGATTCCT-CAAATTGCCAAACATCGAACA
*
26224325 ACGATTCCTCGAATTGCCAAACATCGAACA
1 ACGATTCCTCAAATTGCCAAACATCGAACA
26224355 TTGCCTTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.38, C:0.30, G:0.12, T:0.20
Consensus pattern (30 bp):
ACGATTCCTCAAATTGCCAAACATCGAACA
Found at i:26234146 original size:18 final size:19
Alignment explanation
Indices: 26234118--26234160 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26234108 GTCAATTTAT
*
26234118 AAAAA-GAAAATGAAAGAA
1 AAAAATGAAATTGAAAGAA
* *
26234136 AAAAATGAAATTTATAGAA
1 AAAAATGAAATTGAAAGAA
26234155 AAAAAT
1 AAAAAT
26234161 TCGTATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (19 bp):
AAAAATGAAATTGAAAGAA
Found at i:26235399 original size:15 final size:17
Alignment explanation
Indices: 26235379--26235411 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
26235369 TTATTTAATA
26235379 TTTAAAA-TAT-TATTT
1 TTTAAAAGTATATATTT
26235394 TTTAAAAGTATATATTT
1 TTTAAAAGTATATATTT
26235411 T
1 T
26235412 CATAATTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTAAAAGTATATATTT
Found at i:26238083 original size:17 final size:18
Alignment explanation
Indices: 26238050--26238082 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26238040 CACACCCTTT
26238050 AAAAATATATAATTTTTA
1 AAAAATATATAATTTTTA
26238068 AAAAATA-AT-ATTTTT
1 AAAAATATATAATTTTT
26238083 TCTTATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAAAATATATAATTTTTA
Found at i:26238350 original size:20 final size:21
Alignment explanation
Indices: 26238327--26238366 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26238317 TGTGGTAAGT
26238327 TTAGGG-TTAGGGTTTTAAAA
1 TTAGGGTTTAGGGTTTTAAAA
26238347 TTAGGGTTTAGGGTTTTAAA
1 TTAGGGTTTAGGGTTTTAAA
26238367 TTTTAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (21 bp):
TTAGGGTTTAGGGTTTTAAAA
Found at i:26238697 original size:32 final size:32
Alignment explanation
Indices: 26238625--26238739 Score: 178
Period size: 32 Copynumber: 3.6 Consensus size: 32
26238615 TAAACGCGCG
* *
26238625 ATTTTGTGAAATGATAACAAATATTAGCTTT-
1 ATTTTGTGAAATGATAACAAATATCAACTTTA
*
26238656 ATTTTGTGAAATGCTAACAAATATCAACTTTA
1 ATTTTGTGAAATGATAACAAATATCAACTTTA
26238688 ATTTTGTGAAATGATAACAAATATCAACTTTA
1 ATTTTGTGAAATGATAACAAATATCAACTTTA
* *
26238720 AATTTGTTAAATGATAACAA
1 ATTTTGTGAAATGATAACAA
26238740 TTTTCCTCTA
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 28 0.36
32 49 0.64
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (32 bp):
ATTTTGTGAAATGATAACAAATATCAACTTTA
Found at i:26247827 original size:48 final size:48
Alignment explanation
Indices: 26247768--26247972 Score: 182
Period size: 44 Copynumber: 4.4 Consensus size: 48
26247758 ATGCTGATGG
*
26247768 GACATGGTCTTACACTGGCTCTCACATATATGT-GCCGATGCATGTCCCA
1 GACAT-GTCTTACACTAGCTCTCACATA-ATGTAGCCGATGCATGTCCCA
* * *
26247817 GACATGTCTTACACTAG----CACAT-CTCGTAGGCGATGCATGTCCTA
1 GACATGTCTTACACTAGCTCTCACATAAT-GTAGCCGATGCATGTCCCA
* * *
26247861 GACATCTCTTACACTAGCTCTCGTC-TCAA--TA-CCGATGCCATGTCTCA
1 GACATGTCTTACACTAGCTCTC-ACAT-AATGTAGCCGATG-CATGTCCCA
**
26247908 GACATGGTCTTACACCGGCTCT--CATAATGTAGCCGATGCATGTCCCA
1 GACAT-GTCTTACACTAGCTCTCACATAATGTAGCCGATGCATGTCCCA
26247955 GACATGTCTTACACTAGC
1 GACATGTCTTACACTAGC
26247973 ACACACACAT
Statistics
Matches: 125, Mismatches: 16, Indels: 33
0.72 0.09 0.19
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 35 0.28
45 3 0.02
46 17 0.14
47 29 0.23
48 32 0.26
49 6 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
GACATGTCTTACACTAGCTCTCACATAATGTAGCCGATGCATGTCCCA
Found at i:26247912 original size:47 final size:44
Alignment explanation
Indices: 26247768--26247972 Score: 159
Period size: 48 Copynumber: 4.4 Consensus size: 44
26247758 ATGCTGATGG
*
26247768 GACATGGTCTTACACTGGCTCTCACATATATGT-GCCGATGCATGTCCCA
1 GACAT-GTCTTACACTAGCTCT--CATA-A-GTAGCCGATGCATGT-CCA
* * *
26247817 GACATGTCTTACACTAGCACATC-T-CGTAGGCGATGCATGTCCTA
1 GACATGTCTTACACTAGCTC-TCATAAGTAGCCGATGCATGTCC-A
* *
26247861 GACATCTCTTACACTAGCTCTCGTCTCAA-TA-CCGATGCCATGTCTCA
1 GACATGTCTTACACTAGCTCTC--AT-AAGTAGCCGATG-CATGTC-CA
**
26247908 GACATGGTCTTACACCGGCTCTCATAATGTAGCCGATGCATGTCCCA
1 GACAT-GTCTTACACTAGCTCTCATAA-GTAGCCGATGCATGT-CCA
26247955 GACATGTCTTACACTAGC
1 GACATGTCTTACACTAGC
26247973 ACACACACAT
Statistics
Matches: 127, Mismatches: 14, Indels: 33
0.73 0.08 0.19
Matches are distributed among these distances:
43 6 0.05
44 30 0.24
45 2 0.02
46 19 0.15
47 29 0.23
48 35 0.28
49 6 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
GACATGTCTTACACTAGCTCTCATAAGTAGCCGATGCATGTCCA
Found at i:26252289 original size:48 final size:47
Alignment explanation
Indices: 26252237--26252555 Score: 307
Period size: 48 Copynumber: 6.6 Consensus size: 47
26252227 CTCATGTCAG
* *
26252237 TGCCGATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCAA
* * *
26252285 TGCCGATACTATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCAA
* *
26252333 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCAA
* * * * *
26252381 CGCTGATGCCATGT-CCAGACATGGTCTTACATAGGATCTCATATATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAT-GG--CACACATATCAA
* * * * * * * *
26252430 TGCCAATGCCATGTCCTAGACATGGTCTTATATGGGATCTCGTATTAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACATGGCA-CACATATCAA
* * * * * *
26252478 TGCCGATGCCATGTCCCAAACATGGTCTTATATGGGACCTCATCTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACATGGCA-CACATATCAA
* *
26252526 TGCCGATGCCATATCCCAGATATGGTCTTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTA
26252556 TACGGGACCT
Statistics
Matches: 230, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
46 1 0.00
47 19 0.08
48 171 0.74
49 23 0.10
50 16 0.07
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACATGGCACACATATCAA
Found at i:26252455 original size:145 final size:144
Alignment explanation
Indices: 26252241--26252555 Score: 334
Period size: 145 Copynumber: 2.2 Consensus size: 144
26252231 TGTCAGTGCC
* *
26252241 GATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATACTATGTCCCAGAC
1 GATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCAATACCATGTCCCAGAC
* *
26252306 ATGGTCTTACACT-GGCTCACATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
66 ATGGTCTTACA-TGGGATCACATATCAACGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
26252370 TCACATATCAACGCT
130 TCACATATCAACGCT
* * * * * *
26252385 GATGCCATGT-CCAGACATGGTCTTACA-TAGGATCTCATATATCGATGCCAATGCCATGTCCTA
1 GATGCCATATCCCAGACATGGTCTTACACTA-G--CACACATATCAATGCCAATACCATGTCCCA
* * * * ** *
26252448 GACATGGTCTTATATGGGATCTCGTATTAGTGCCGATGCCATGTCCCAAACATGGTCTTATA-TG
63 GACATGGTCTTACATGGGATCACATATCAACGCCGATGCCATGTCCCAAACATGGTCTTACACT-
* * * * *
26252512 GGAC-CTCATCTCGATGCC
127 GG-CTCACATATCAACGCT
*
26252530 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGACATGGTCTTA
26252556 TACGGGACCT
Statistics
Matches: 140, Mismatches: 24, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
142 2 0.01
143 18 0.13
144 11 0.08
145 94 0.67
146 15 0.11
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (144 bp):
GATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCAATACCATGTCCCAGAC
ATGGTCTTACATGGGATCACATATCAACGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
CACATATCAACGCT
Found at i:26252635 original size:6 final size:6
Alignment explanation
Indices: 26252624--26252653 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
26252614 ATAAAGACAA
26252624 ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT
26252654 TTCATGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:26269914 original size:14 final size:13
Alignment explanation
Indices: 26269895--26269924 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
26269885 TATTTAACTA
26269895 GTTCTTAATTATGT
1 GTTCTTAATTAT-T
26269909 GTTCTTAATTATT
1 GTTCTTAATTATT
26269922 GTT
1 GTT
26269925 TTGATATCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
GTTCTTAATTATT
Found at i:26274444 original size:10 final size:10
Alignment explanation
Indices: 26274429--26274454 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26274419 AAATATCAAC
26274429 CACATATATG
1 CACATATATG
26274439 CACATATATG
1 CACATATATG
26274449 CACATA
1 CACATA
26274455 ACCAAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (10 bp):
CACATATATG
Found at i:26275062 original size:40 final size:40
Alignment explanation
Indices: 26274967--26275101 Score: 139
Period size: 40 Copynumber: 3.3 Consensus size: 40
26274957 GAATTATCGT
* * * *
26274967 ACACTAAGTGCCAAAACATAACCGAAGCTAT-TTTAACCTCAC
1 ACACTAAGTGCC-ATACATAGCAGAAGCTATCTTGAA--TCAC
*
26275009 ACACTAAGTGCCATACATTGCCA-AAGCTATCTTGAATCAC
1 ACACTAAGTGCCATACATAG-CAGAAGCTATCTTGAATCAC
* * * *
26275049 GCACTAAGTGCCATATATAGCAGAAGCTATGTTGAATCCC
1 ACACTAAGTGCCATACATAGCAGAAGCTATCTTGAATCAC
26275089 ACACTAAGTGCCA
1 ACACTAAGTGCCA
26275102 CATATAGGCG
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.03
40 48 0.61
41 12 0.15
42 17 0.22
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (40 bp):
ACACTAAGTGCCATACATAGCAGAAGCTATCTTGAATCAC
Found at i:26276626 original size:41 final size:40
Alignment explanation
Indices: 26276548--26276705 Score: 165
Period size: 41 Copynumber: 3.9 Consensus size: 40
26276538 AATACTTAAT
*
26276548 ATTTTGCACACTAAGTGCTAATACATAGCCGAAGCTATTATA
1 ATTTTGCACACTAAGTGC-CATACATAGCCGAAGCTATT-TA
* *
26276590 ATTTTGCACACTAAGTGCCTTACATAGCCGAAGCTATCTTG
1 ATTTTGCACACTAAGTGCCATACATAGCCGAAGCTAT-TTA
* * * * * *
26276631 GTCTCGCACACTAAGCGCCATATATAGCCGAAGCTATTCCA
1 ATTTTGCACACTAAGTGCCATACATAGCCGAAGCTATT-TA
* * *
26276672 A-ATTGCACACTAAGTGCCATATATAGCTGAAGCT
1 ATTTTGCACACTAAGTGCCATACATAGCCGAAGCT
26276706 TTCTTGAATC
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 30 0.31
41 49 0.50
42 19 0.19
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (40 bp):
ATTTTGCACACTAAGTGCCATACATAGCCGAAGCTATTTA
Found at i:26276698 original size:81 final size:83
Alignment explanation
Indices: 26276553--26276711 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 83
26276543 TTAATATTTT
* * * *
26276553 GCACACTAAGTGCTAATACATAGCCGAAGCTATTATAATTTTGCACACTAAGTGCCTTACATAGC
1 GCACACTAAGCGCTAATACATAGCCGAAGCTATTACAATATTGCACACTAAGTGCCATACATAGC
26276618 CGAAGCTATCTTGGTCTC
66 CGAAGCTATCTTGGTCTC
* * * *
26276636 GCACACTAAGCGC-CATATATAGCCGAAGCTATTCCAA-ATTGCACACTAAGTGCCATATATAGC
1 GCACACTAAGCGCTAATACATAGCCGAAGCTATTACAATATTGCACACTAAGTGCCATACATAGC
* *
26276699 TGAAGCTTTCTTG
66 CGAAGCTATCTTG
26276712 AATCGCATAC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 34 0.52
82 20 0.30
83 12 0.18
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (83 bp):
GCACACTAAGCGCTAATACATAGCCGAAGCTATTACAATATTGCACACTAAGTGCCATACATAGC
CGAAGCTATCTTGGTCTC
Found at i:26276724 original size:40 final size:40
Alignment explanation
Indices: 26276595--26276736 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
26276585 TTATAATTTT
* * * **
26276595 GCACACTAAGTGCCTTACATAGCCGAAGCTATCTTGGTCTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTTTCTT-GAATC
* ** *
26276636 GCACACTAAGCGCCATATATAGCCGAAGCTATTC-CAAATT
1 GCACACTAAGTGCCATATATAGCCGAAGCT-TTCTTGAATC
*
26276676 GCACACTAAGTGCCATATATAGCTGAAGCTTTCTTGAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTTTCTTGAATC
* * *
26276716 GCATACTAATTGCTATATATA
1 GCACACTAAGTGCCATATATA
26276737 TATATCTGAA
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.04
40 50 0.61
41 27 0.33
42 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTTTCTTGAATC
Found at i:26284197 original size:49 final size:47
Alignment explanation
Indices: 26283929--26284581 Score: 1018
Period size: 47 Copynumber: 13.6 Consensus size: 47
26283919 CCCTTCGGGA
* * * * * *
26283929 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26283976 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284023 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26284070 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26284164 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284213 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284260 CTTATCACATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 C---T----TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26284314 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284363 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284410 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26284459 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26284555 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
26284582 TATTCAAATA
Statistics
Matches: 569, Mismatches: 24, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
47 337 0.59
49 184 0.32
50 1 0.00
51 1 0.00
54 46 0.08
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26284215 original size:96 final size:94
Alignment explanation
Indices: 26283929--26284581 Score: 1018
Period size: 96 Copynumber: 6.8 Consensus size: 94
26283919 CCCTTCGGGA
* * * * * * *
26283929 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
26283994 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
26284023 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
26284088 TTTCACATTCATCACATCGGCTATTATGC
66 TTTCACATTCATCACATCGGCCATTAGGC
26284117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
26284182 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
26284213 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATCACATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC---T----TATCACATA
26284278 TATACACTTTCACATTCATCACATCGGCCATTAGGC
59 TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26284314 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26284379 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
26284410 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
26284475 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
26284508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26284573 TTTCACATT
66 TTTCACATT
26284582 TATTCAAATA
Statistics
Matches: 523, Mismatches: 23, Indels: 26
0.91 0.04 0.05
Matches are distributed among these distances:
94 157 0.30
96 230 0.44
98 45 0.09
99 1 0.00
100 1 0.00
101 45 0.09
103 44 0.08
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:26284301 original size:25 final size:25
Alignment explanation
Indices: 26283979--26284057 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
26283969 ACTCGGCCCT
26283979 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
26284004 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
26284026 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
26284051 ATCACAT
1 ATCACAT
26284058 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:26294600 original size:49 final size:48
Alignment explanation
Indices: 26294528--26294626 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 48
26294518 CTTTCCTCAC
* *
26294528 ATATTTCTGAGCTAACATCGAAGATATCACTGCTGGCAAACGATTCTAT
1 ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTC-AT
26294577 ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTCAT
1 ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTCAT
26294625 AT
1 AT
26294627 CATTAGATTC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 4 0.08
49 44 0.92
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (48 bp):
ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTCAT
Found at i:26294603 original size:23 final size:23
Alignment explanation
Indices: 26294528--26294603 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
26294518 CTTTCCTCAC
26294528 ATATTTCTGAGCTAACATCGAAG
1 ATATTTCTGAGCTAACATCGAAG
* * * *
26294551 ATATCACTGCTG-GCAAACGATTC-TAT
1 ATAT---TTCTGAGCTAAC-A-TCGAAG
26294577 ATATTTCTGAGCTAACATCGAAG
1 ATATTTCTGAGCTAACATCGAAG
26294600 ATAT
1 ATAT
26294604 CACTACTGGC
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 2 0.05
23 14 0.37
24 5 0.13
25 5 0.13
26 10 0.26
27 2 0.05
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (23 bp):
ATATTTCTGAGCTAACATCGAAG
Found at i:26297681 original size:14 final size:15
Alignment explanation
Indices: 26297654--26297682 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26297644 TACTATTCAT
26297654 CCATAGCATAAAATA
1 CCATAGCATAAAATA
26297669 CCATAGC-TAAAATA
1 CCATAGCATAAAATA
26297683 GACTCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (15 bp):
CCATAGCATAAAATA
Found at i:26299171 original size:30 final size:29
Alignment explanation
Indices: 26299137--26299200 Score: 69
Period size: 31 Copynumber: 2.2 Consensus size: 29
26299127 TATTGATACA
*
26299137 AGTCCAT-ATATT-TCATTTATTTCACATTTT
1 AGTCCATCAAATTATCATTT-TTTCA-A-TTT
*
26299167 AGTCCCTCAAATTATCATTTTTTCAATTT
1 AGTCCATCAAATTATCATTTTTTCAATTT
26299196 AGTCC
1 AGTCC
26299201 TAATTACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 8 0.27
30 7 0.23
31 9 0.30
32 6 0.20
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.48
Consensus pattern (29 bp):
AGTCCATCAAATTATCATTTTTTCAATTT
Found at i:26305845 original size:13 final size:13
Alignment explanation
Indices: 26305827--26305861 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
26305817 GAGGACACAC
26305827 GACCGTGTAACAT
1 GACCGTGTAACAT
26305840 GACCGTGTAACAT
1 GACCGTGTAACAT
26305853 GACCGTGTA
1 GACCGTGTA
26305862 TCGCACATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (13 bp):
GACCGTGTAACAT
Found at i:26308311 original size:40 final size:40
Alignment explanation
Indices: 26308210--26308430 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
26308200 TATTCGAATG
* * *
26308210 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
26308251 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
26308291 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
26308331 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * **
26308371 ATATCTGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
26308410 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
26308431 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 14 0.09
40 95 0.63
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:26319972 original size:40 final size:40
Alignment explanation
Indices: 26319871--26320091 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
26319861 TATTCGAATG
* * *
26319871 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
26319912 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
26319952 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
26319992 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * **
26320032 ATATCTGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
26320071 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
26320092 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 14 0.09
40 95 0.63
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:26329647 original size:34 final size:33
Alignment explanation
Indices: 26329591--26329686 Score: 77
Period size: 34 Copynumber: 2.8 Consensus size: 33
26329581 TTTCAATTAG
* * *
26329591 GGGCCTTAGCCCCTCTTTCAGTAGCAGTAACAGTCT
1 GGGCCTTAG-CCC-ATTACAGTA-CAGTAACACTCT
**
26329627 GGG-CTTGAGCCCATTACAGTATCAGTGGCACTCT
1 GGGCCTT-AGCCCATTACAGTA-CAGTAACACTCT
* *
26329661 GGGCCTTATCCCATTTCAGTACAGTA
1 GGGCCTTAGCCCATTACAGTACAGTA
26329687 TGCAAACATA
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
33 4 0.08
34 31 0.63
35 9 0.18
36 5 0.10
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (33 bp):
GGGCCTTAGCCCATTACAGTACAGTAACACTCT
Found at i:26333628 original size:28 final size:29
Alignment explanation
Indices: 26333564--26333628 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
26333554 TTTTCATTTA
* *
26333564 TTTCCCAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* *
26333593 TTTCTCAATTTAATCCCT-AATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
26333621 TTTGTCAA
1 TTTCTCAA
26333629 AAATCACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.28, C:0.26, G:0.03, T:0.43
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:26341306 original size:60 final size:60
Alignment explanation
Indices: 26341231--26341350 Score: 188
Period size: 60 Copynumber: 2.0 Consensus size: 60
26341221 AATGGTAGAA
* * *
26341231 ATCTTATTGGGATCAACTTC-AATACCATTTCCTGAAACGATGTGGCCTAGGAATCCAACT
1 ATCTTATTAGAATCAAC-TCGAATACCATTGCCTGAAACGATGTGGCCTAGGAATCCAACT
*
26341291 ATCTTATTAGAATCAACTCGAATACCATTGCCTGAAATGATGTGGCCTAGGAATCCAACT
1 ATCTTATTAGAATCAACTCGAATACCATTGCCTGAAACGATGTGGCCTAGGAATCCAACT
26341351 TCCCGAAGCC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
59 2 0.04
60 53 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (60 bp):
ATCTTATTAGAATCAACTCGAATACCATTGCCTGAAACGATGTGGCCTAGGAATCCAACT
Found at i:26345356 original size:56 final size:56
Alignment explanation
Indices: 26345289--26345447 Score: 164
Period size: 55 Copynumber: 2.9 Consensus size: 56
26345279 CATGACAAAG
* * *
26345289 CACGCCTCTCAACAGGGCTACACATGAGCACCCGGACCTAGCATGCATCACAT-TTC
1 CACGCCTCTCAACAGGGCTACACAT-AGCTCCCGGACCTAGCATGTATCACATATTA
* * * * * *
26345345 CACGCCTCTCAATAGTGCTACATA-AGCTCCAGGACCTAG-GTGTACCACATAATTA
1 CACGCCTCTCAACAGGGCTACACATAGCTCCCGGACCTAGCATGTATCACAT-ATTA
* * *
26345400 CATGCCTCTCAACGGGGCTACACA-AGCTCCCGAACCTAGCATGTATCA
1 CACGCCTCTCAACAGGGCTACACATAGCTCCCGGACCTAGCATGTATCA
26345448 TGTCATCAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
53 8 0.10
54 13 0.16
55 34 0.41
56 27 0.33
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (56 bp):
CACGCCTCTCAACAGGGCTACACATAGCTCCCGGACCTAGCATGTATCACATATTA
Found at i:26346869 original size:31 final size:31
Alignment explanation
Indices: 26346825--26346925 Score: 159
Period size: 31 Copynumber: 3.3 Consensus size: 31
26346815 CTTAAGTACC
* * *
26346825 AAGCATTTCCATAAATCATATCACTAGGCC-
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
26346855 AAGGCCTTTTCATAAATCATATCACTGGGCCG
1 AA-GCCTTTTCATAAATCATATCACTGGGCCG
26346887 AAGCCTTTTCATAAATCATATCACTGGGCCG
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
26346918 AAGCCTTT
1 AAGCCTTT
26346926 ACTGTAAACG
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
30 2 0.03
31 62 0.94
32 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGCCTTTTCATAAATCATATCACTGGGCCG
Found at i:26346996 original size:42 final size:42
Alignment explanation
Indices: 26346949--26347040 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
26346939 TGGCCCTTAG
26346949 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
26346991 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
*
26347033 GCTCATTT
1 GCCCATTT
26347041 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
Found at i:26348254 original size:27 final size:27
Alignment explanation
Indices: 26348229--26348327 Score: 146
Period size: 27 Copynumber: 3.7 Consensus size: 27
26348219 TTTGTAAATC
*
26348229 AGGGGTATTTTGGTAACTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
26348255 TGAGGGTATTTCGGTAATTTTACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
26348283 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
26348310 ATGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
26348328 CTATCCTACA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 62 0.95
28 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:26348287 original size:54 final size:53
Alignment explanation
Indices: 26348203--26348327 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 53
26348193 TAGAAAGTCA
** ** *
26348203 AGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAACTTTACAAATT
1 AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAACTTTACAAACT
*
26348256 GAGGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAACTTTACAAACT
*
26348310 ATGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
26348328 CTATCCTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.03
54 60 0.97
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAACTTTACAAACT
Found at i:26348341 original size:54 final size:53
Alignment explanation
Indices: 26348228--26348369 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 53
26348218 TTTTGTAAAT
* * *
26348228 CAGGGGTATTTTGGTAACTTTACAAATTGAGGGTATTTCGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTCTACAAA
* **
26348281 CTAGGGGTATTTTGGTAATTTTACAAACT-ATGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTACAAACTGA-GGGTATTTCGGTAATTCTA-CAAA
** * *
26348336 CAGGGGTATTTCAGTAATTTCACAATC-GAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAACTGAGGGTA
26348370 AAACGGTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
53 7 0.09
54 65 0.87
55 3 0.04
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (53 bp):
CAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTCTACAAA
Found at i:26377829 original size:18 final size:18
Alignment explanation
Indices: 26377806--26377868 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
26377796 GAACACATAA
26377806 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
* *
26377824 AGTAAGCAATATACAAA--TAA
1 AGTAAGC--TTTA-AAAGCT-T
26377844 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
26377862 AGTAAGC
1 AGTAAGC
26377869 CATATACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
18 17 0.49
19 2 0.06
20 10 0.29
21 3 0.09
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (18 bp):
AGTAAGCTTTAAAAGCTT
Found at i:26377844 original size:38 final size:38
Alignment explanation
Indices: 26377802--26377884 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
26377792 GAAAGAACAC
26377802 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
1 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
*
26377840 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCCATATACAA
1 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
26377878 ATAAAGT
1 ATAAAGT
26377885 CATCATATGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (38 bp):
ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
Found at i:26378275 original size:43 final size:45
Alignment explanation
Indices: 26378181--26378301 Score: 151
Period size: 43 Copynumber: 2.8 Consensus size: 45
26378171 TCACATATTG
* * * * *
26378181 ATGCCACTATCCCAGACAGGGTCTTACACG-AA-ATCAATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAACA
26378224 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA-T-ACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAACA
* *
26378267 ATGGCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC
26378302 ATATCTCGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 62 0.90
44 3 0.04
45 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAACA
Found at i:26378841 original size:28 final size:29
Alignment explanation
Indices: 26378791--26378845 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
26378781 ATTTATTTTA
*
26378791 CAATTTAACCCCTCAATTTACATTTTTCT
1 CAATTTAACCCCTCAATTGACATTTTTCT
*
26378820 CAATTTAATCCCT-AATTGACATTTTT
1 CAATTTAACCCCTCAATTGACATTTTT
26378846 GTGAAAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (29 bp):
CAATTTAACCCCTCAATTGACATTTTTCT
Found at i:26393155 original size:27 final size:27
Alignment explanation
Indices: 26393125--26393264 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
26393115 AAAGTACTCC
26393125 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
26393152 CGATTTTTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
26393179 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
26393206 C-AGTTTACAAAATTATCGTTTTACCAT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26393233 TGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26393260 TGATT
1 CGATT
26393265 GTGAAATTAC
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 89 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:26393184 original size:54 final size:54
Alignment explanation
Indices: 26393126--26393264 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
26393116 AAGTACTCCC
** *
26393126 GATTTACAGAATTACCGTTTTACCCTCGATTTTTAAAATTA-CTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATC-GTTTTACCATT
* *
26393180 GATTTACAGAATTACTGGTTTACCCTC-AGTTTACAAAATTATCGTTTTACCATT
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTATCGTTTTACCATT
* *
26393234 GATTTACAGAATTACCATTTTACCCTTGATT
1 GATTTACAGAATTACCGTTTTACCCTCGATT
26393265 GTGAAATTAC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.01
54 70 0.96
55 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.42
Consensus pattern (54 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCATT
Found at i:26393364 original size:81 final size:81
Alignment explanation
Indices: 26393269--26393435 Score: 280
Period size: 81 Copynumber: 2.1 Consensus size: 81
26393259 TTGATTGTGA
26393269 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
*
26393334 TACCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * *
26393350 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
* *
26393415 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
26393431 AATTA
1 AATTA
26393436 TCGAGACACC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (81 bp):
AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
TACCCCTATAGGATAG
Found at i:26393446 original size:27 final size:27
Alignment explanation
Indices: 26393269--26393464 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
26393259 TTGATTGTGA
* *
26393269 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26393296 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26393323 AAATACCGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26393350 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26393377 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26393404 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
26393431 AATTATCGAGACACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26393458 AATTACC
1 AATTACC
26393465 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26393456 original size:81 final size:81
Alignment explanation
Indices: 26393269--26393462 Score: 262
Period size: 81 Copynumber: 2.4 Consensus size: 81
26393259 TTGATTGTGA
* *
26393269 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
1 AATTACCAAAACACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
*
26393334 TACCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * *
26393350 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAACACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
* *
26393415 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * * * * *
26393431 AATTATCGAGACACCCTTGTGGGGTAAAATTA
1 AATTACCAAAACACCCCTGTAGGGTAGAATTA
26393463 CCATTTTGCC
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (81 bp):
AATTACCAAAACACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
TACCCCTATAGGATAG
Found at i:26393701 original size:27 final size:26
Alignment explanation
Indices: 26393663--26393745 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
26393653 CGGAGGAAGC
* *
26393663 GTTCTGGTGGCTATGGCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
26393690 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
26393716 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26393743 GTT
1 GTT
26393746 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26393865 original size:22 final size:22
Alignment explanation
Indices: 26393833--26393891 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
26393823 CCCGTTATTA
*
26393833 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
26393855 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
26393877 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26393892 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26394110 original size:27 final size:27
Alignment explanation
Indices: 26394056--26394127 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
26394046 TAGGTGGGTT
* *
26394056 TGCCACATTATCTGATTCTAGTGGCTC
1 TGCCACAATATCTGATTCTAGTGACTC
*
26394083 TGCCACAATATCT-ATATCTGGTGACTC
1 TGCCACAATATCTGAT-TCTAGTGACTC
* *
26394110 TGTCACGATATCTG-TTCT
1 TGCCACAATATCTGATTCT
26394128 GGCAGCCATG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGATTCTAGTGACTC
Found at i:26394256 original size:6 final size:6
Alignment explanation
Indices: 26394247--26394433 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
26394237 TTGCATTCAC
* *
26394247 ATTCTG ATTCTG ATTCT- ATCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
26394296 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
26394344 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTATTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
26394393 ATTCTG ATTCTG ATTCTG -TTACTA ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
26394434 CATTTTGGTT
Statistics
Matches: 149, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 12 0.08
6 123 0.83
7 10 0.07
8 4 0.03
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26394389 original size:85 final size:85
Alignment explanation
Indices: 26394247--26394433 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
26394237 TTGCATTCAC
*
26394247 ATTCTGATTCTGATTCTATCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
26394312 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTA
* * *
26394332 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTATTAATATTGATTC
1 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
26394397 TGATTCTGATTCTGTTACTA
66 TGATTCTGATTCTGTTACTA
26394417 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
26394434 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTA
Found at i:26394454 original size:30 final size:30
Alignment explanation
Indices: 26394247--26394433 Score: 253
Period size: 30 Copynumber: 6.4 Consensus size: 30
26394237 TTGCATTCAC
* *
26394247 ATTCTGATTCTGATTCTATCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
26394278 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
26394308 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
26394332 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
26394363 ATTCTGATTCTGATTCTGTTATTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
26394393 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
26394423 ATTCTGATTCT
1 ATTCTGATTCT
26394434 CATTTTGGTT
Statistics
Matches: 140, Mismatches: 7, Indels: 19
0.84 0.04 0.11
Matches are distributed among these distances:
24 21 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 69 0.49
31 44 0.31
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:26396462 original size:27 final size:27
Alignment explanation
Indices: 26396447--26396588 Score: 160
Period size: 27 Copynumber: 5.3 Consensus size: 27
26396437 CCGAAGTACT
26396447 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
26396474 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
26396501 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
26396528 CTC-AGTTTACAAAATTATCGTTGTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
26396555 CTCGATTTACAGAATTACCATTTCACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
26396582 CTTGATT
1 CTCGATT
26396589 GTGAAATTAC
Statistics
Matches: 92, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 90 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:26396484 original size:54 final size:54
Alignment explanation
Indices: 26396419--26396599 Score: 204
Period size: 54 Copynumber: 3.4 Consensus size: 54
26396409 TACTGAAATG
* ** *
26396419 CCTCGACTTGTAAAATTACCGAAGTACTCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTGTAAAATTACCGTTGTACCCTCGATTTACAGAATTACCGTTTTAC
* * * *
26396473 CCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTAC
1 CCTCGATTTGTAAAATTACCGTTGTACCCTCGATTTACAGAATTACCGTTTTAC
** * * *
26396527 CCTC-AGTTTACAAAATTATCGTTGTACCCTCGATTTACAGAATTACCATTTCAC
1 CCTCGA-TTTGTAAAATTACCGTTGTACCCTCGATTTACAGAATTACCGTTTTAC
* *
26396581 CCTTGA-TTGTGAAATTACC
1 CCTCGATTTGTAAAATTACC
26396600 AAAATACCCC
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
53 10 0.10
54 92 0.89
55 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.36
Consensus pattern (54 bp):
CCTCGATTTGTAAAATTACCGTTGTACCCTCGATTTACAGAATTACCGTTTTAC
Found at i:26396623 original size:27 final size:27
Alignment explanation
Indices: 26396593--26396788 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
26396583 TTGATTGTGA
*
26396593 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26396620 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
26396647 AAATGCCGAAATATCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26396674 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26396701 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26396728 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26396755 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26396782 AATTACC
1 AATTACC
26396789 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26396689 original size:81 final size:81
Alignment explanation
Indices: 26396593--26396786 Score: 271
Period size: 81 Copynumber: 2.4 Consensus size: 81
26396583 TTGATTGTGA
*
26396593 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATGCCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
* *
26396658 TATCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * *
26396674 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
* *
26396739 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * * * *
26396755 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
26396787 CCATTTTGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
TACCCCTATAGGATAG
Found at i:26397033 original size:27 final size:26
Alignment explanation
Indices: 26396991--26397069 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
26396981 GGAAGCGTTC
* *
26396991 TGGTGGCTATGGCACAAATATCTGTTT
1 TGGTGGCTCTGCCAC-AATATCTGTTT
26397018 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TT
* * *
26397045 TGGTGACTCAGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
26397070 GACCGATCGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 10 0.22
27 36 0.78
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTT
Found at i:26397189 original size:22 final size:22
Alignment explanation
Indices: 26397157--26397215 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
26397147 CCCGTTATTA
*
26397157 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * *
26397179 ATGGCTTTGTGCCATCTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
26397201 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26397216 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26397402 original size:27 final size:27
Alignment explanation
Indices: 26397380--26397453 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
26397370 TAGGTGGGTT
*
26397380 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
26397407 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
26397434 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
26397454 CAGCCATTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:26397580 original size:6 final size:6
Alignment explanation
Indices: 26397571--26397757 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
26397561 TTGCATTCAC
* *
26397571 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
26397620 -TTACTA ATACTG ATTCTG ATTTTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
26397668 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
26397717 ATTCTG ATTCTG ATTCTG -TTACTA ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
26397758 CATTTTGGTT
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 123 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26397635 original size:30 final size:30
Alignment explanation
Indices: 26397571--26397757 Score: 251
Period size: 30 Copynumber: 6.4 Consensus size: 30
26397561 TTGCATTCAC
* *
26397571 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
26397602 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
26397632 ATTCTGATTTTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
26397656 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
26397687 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
26397717 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
26397747 ATTCTGATTCT
1 ATTCTGATTCT
26397758 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
24 22 0.16
26 1 0.01
29 1 0.01
30 70 0.50
31 45 0.32
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:26397689 original size:25 final size:24
Alignment explanation
Indices: 26397632--26397698 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
26397622 ACTAATACTG
* * *
26397632 ATTCTGATTTTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTCACTA
26397656 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCA-CTA
26397681 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
26397699 ATTCTGTTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTCACTA
Found at i:26397711 original size:85 final size:85
Alignment explanation
Indices: 26397571--26397757 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
26397561 TTGCATTCAC
*
26397571 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
* *
26397636 TGATTTTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTA
*
26397656 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
26397721 TGATTCTGATTCTGTTACTA
66 TGATTCTGATTCTGTTACTA
26397741 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
26397758 CATTTTGGTT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTA
Found at i:26397774 original size:30 final size:30
Alignment explanation
Indices: 26397571--26397778 Score: 234
Period size: 30 Copynumber: 7.1 Consensus size: 30
26397561 TTGCATTCAC
* *
26397571 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* *
26397602 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
26397632 ATTCTGATTTTGATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
26397656 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
26397687 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
*
26397717 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
26397747 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
26397777 AT
1 AT
26397779 AATGTTTCTT
Statistics
Matches: 157, Mismatches: 10, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
24 21 0.13
26 1 0.01
29 2 0.01
30 84 0.54
31 49 0.31
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:26400172 original size:23 final size:24
Alignment explanation
Indices: 26400145--26400189 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
26400135 TTTCACAAGC
*
26400145 TTATTCAATTCA-AGTTTCATACA
1 TTATTCAATTCACACTTTCATACA
26400168 TTATTCAATTCACACTTTCATA
1 TTATTCAATTCACACTTTCATA
26400190 TAATCAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.44
Consensus pattern (24 bp):
TTATTCAATTCACACTTTCATACA
Found at i:26400654 original size:42 final size:42
Alignment explanation
Indices: 26400551--26400720 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 42
26400541 CAGAAAGTAC
* * * * *
26400551 ATACAATGCCAACATCCCAGAC-GTGGTCATACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACAG-GGTCTTACACGAAATCAA
*
26400593 ACATCGATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGACAGGGTCTTACACGAAATCAA
* *
26400636 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATA
1 ATACGATGCCAACGTCCCAGACAGGGTCTTACACG-AAATCA-A
**
26400680 AGT-CGATGCCAACGTCCCAGACATAGTCTTACACGAAATCA
1 A-TACGATGCCAACGTCCCAGACAGGGTCTTACACGAAATCA
26400721 CATATTGGAT
Statistics
Matches: 110, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
42 32 0.29
43 44 0.40
44 33 0.30
45 1 0.01
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:26400700 original size:86 final size:85
Alignment explanation
Indices: 26400551--26400720 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 85
26400541 CAGAAAGTAC
* *
26400551 ATACAATGCCAACATCCCAGACGTGGTCATACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACATCCCAGACATGGTCATACACGTAATCAAACATCGATGCCACTGTCCCAGAC
*
26400616 AGGGTCTTACACGAAATCAA
66 AGAGTCTTACACGAAATCAA
* ** * *
26400636 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCA
1 ATACAATGCCAACATCCCAGACATGGTCATACACGT-AATCA-AACATCGATGCC-ACTGTCCCA
*
26400699 GACATAGTCTTACACGAAATCA
63 GACAGAGTCTTACACGAAATCA
26400721 CATATTGGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 30 0.41
86 39 0.53
87 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (85 bp):
ATACAATGCCAACATCCCAGACATGGTCATACACGTAATCAAACATCGATGCCACTGTCCCAGAC
AGAGTCTTACACGAAATCAA
Found at i:26403215 original size:27 final size:27
Alignment explanation
Indices: 26403156--26403216 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
26403146 CATACATACA
* * *
26403156 TAGGGGTATATCAGTCATTTTACCTCG
1 TAGGGGTATAACAGTCATTTCACCTAG
26403183 TAGGGGTATAACAGTCATTTCACC-AG
1 TAGGGGTATAACAGTCATTTCACCTAG
26403209 TATGGGGT
1 TA-GGGGT
26403217 CTAAGTGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (27 bp):
TAGGGGTATAACAGTCATTTCACCTAG
Found at i:26408134 original size:39 final size:40
Alignment explanation
Indices: 26408078--26408214 Score: 208
Period size: 39 Copynumber: 3.5 Consensus size: 40
26408068 TTTTGGAGTG
*
26408078 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCTGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
26408118 GTATC-GGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCTGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
* *
26408157 GTATCTGGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAATG
1 GTATCTGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAATT
*
26408197 GAATCTGGG-TTAAAGACC
1 GTATCTGGGTTTAAAGACC
26408215 TGTAGGCTCG
Statistics
Matches: 92, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
39 49 0.53
40 43 0.47
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (40 bp):
GTATCTGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
Found at i:26408222 original size:39 final size:40
Alignment explanation
Indices: 26408048--26408214 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
26408038 GTATCCGAGC
* * ** * *
26408048 TTAAAGAGCTGCAGGCTTCGTTTTGGAGTGGTATCCGGGT
1 TTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATCTGGGT
* *
26408088 TTAAAGACCCGCAGGCTAT-ATGCTGGAATTGTATC-GGGT
1 TTAAAGACCCGCAGGCT-TCGTGCTGGAATGGTATCTGGGT
* *
26408127 TTAAAGACCCGCAGGCTAT-ATGCTGGAATTGTATCTGGGT
1 TTAAAGACCCGCAGGCT-TCGTGCTGGAATGGTATCTGGGT
*
26408167 TTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCTGGG-
1 TTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATCTGGGT
26408206 TTAAAGACC
1 TTAAAGACC
26408215 TGTAGGCTCG
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 49 0.43
40 64 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (40 bp):
TTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATCTGGGT
Found at i:26412005 original size:37 final size:37
Alignment explanation
Indices: 26411951--26412053 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
26411941 CGGATAGTCC
*
26411951 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
26411988 TCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
26412025 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
26412054 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:26412280 original size:48 final size:48
Alignment explanation
Indices: 26412226--26412534 Score: 564
Period size: 48 Copynumber: 6.4 Consensus size: 48
26412216 GTCGAATCAC
**
26412226 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
26412274 TAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
26412322 TAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
26412370 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
26412418 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
26412466 TAGCCATTCGGCTTTACCACATATACATATCTCATACAAATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
26412514 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
26412535 GACATATATA
Statistics
Matches: 252, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 252 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:26416569 original size:39 final size:39
Alignment explanation
Indices: 26416524--26416691 Score: 156
Period size: 40 Copynumber: 4.2 Consensus size: 39
26416514 CGGGGTTTAG
** * *
26416524 CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAATGCCTTCGGGTCTTAAC
* * * *
26416563 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCA-CAATGCCTTCGGGTCTTAAC
* * *
26416603 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAAT
1 CCGGATATAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
* * * * *
26416643 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCAC-AATGCCTTCGGGTCTTAAC
26416684 CCGGATAT
1 CCGGATAT
26416692 CATTCGAGTA
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 15 0.14
40 61 0.59
41 28 0.27
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTCACTAGCACAATGCCTTCGGGTCTTAAC
Done.