Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 86 of 373
Found at i:27165565 original size:42 final size:43
Alignment explanation
Indices: 27165457--27165570 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
27165447 AGCTCGTACA
* * * *
27165457 ATGCCAATGTCCTAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATAAAATATCG
* *
27165500 ATGCCACTATCCTAGACAG-GGTCTTACACGAAATAAAATA-CG
1 ATGCCAATGTCCTAGAC-GTGGTCTTACACGAAATAAAATATCG
*
27165542 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCTAGACGTGGTCTTACAC
27165571 AATAACACAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 32 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGAAATAAAATATCG
Found at i:27170181 original size:25 final size:25
Alignment explanation
Indices: 27170163--27170246 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 25
27170153 GAGCTATGAT
27170163 CAGTAAGCTCCTATTGAGCTGATAGA
1 CAGTAAGCT-CTATTGAGCTGATAGA
* *
27170189 CAGTAAGCTTTATTGAGTTGA-A-A
1 CAGTAAGCTCTATTGAGCTGATAGA
* * *
27170212 CGGTAAGCTCTGA-CGAGCTGA-AAA
1 CAGTAAGCTCT-ATTGAGCTGATAGA
27170236 CAGTAAGCTCT
1 CAGTAAGCTCT
27170247 TACAAGCTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 17 0.35
24 13 0.27
25 10 0.20
26 9 0.18
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (25 bp):
CAGTAAGCTCTATTGAGCTGATAGA
Found at i:27170254 original size:24 final size:24
Alignment explanation
Indices: 27170209--27170254 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
27170199 TATTGAGTTG
* *
27170209 AAACGGTAAGCTCTGACGAGCTGA
1 AAACAGTAAGCTCTGACAAGCTGA
*
27170233 AAACAGTAAGCTCTTACAAGCT
1 AAACAGTAAGCTCTGACAAGCT
27170255 AATATATAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (24 bp):
AAACAGTAAGCTCTGACAAGCTGA
Found at i:27173844 original size:46 final size:46
Alignment explanation
Indices: 27173721--27173845 Score: 180
Period size: 46 Copynumber: 2.7 Consensus size: 46
27173711 TGGGCATCCG
* *
27173721 AGCTCGTTGAGTCGAGTCCGAGTTCACTTATAGATGCAAATGTCCA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
* *
27173767 AGCTCGTTGGGTTGAGTCTGAGTTCACTTATGGATGCAAATG-CTCA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC-CA
* *
27173813 AGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27173846 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
45 1 0.01
46 69 0.99
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
Found at i:27179350 original size:25 final size:24
Alignment explanation
Indices: 27179316--27179367 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
27179306 CACAAACACA
27179316 GCTCTTTATGAGAATCCTGATATAG
1 GCTCTTTATGAGAATCCTGATAT-G
**
27179341 GCTCTTTATGAGCTTCCTGATATG
1 GCTCTTTATGAGAATCCTGATATG
27179365 GCT
1 GCT
27179368 TGCTTGAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (24 bp):
GCTCTTTATGAGAATCCTGATATG
Found at i:27181044 original size:37 final size:37
Alignment explanation
Indices: 27180994--27181070 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
27180984 TATAAAGTTT
* *
27180994 GGTAATGCTCTGTAACCCTGTTCTGATGACGGATATG
1 GGTAATGCTCTGTAACCCTGTTCTGACGACAGATATG
27181031 GGTAATGCTCTGTAACCCTGTTCTGACGACAGATATG
1 GGTAATGCTCTGTAACCCTGTTCTGACGACAGATATG
27181068 GGT
1 GGT
27181071 TAGGGTGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (37 bp):
GGTAATGCTCTGTAACCCTGTTCTGACGACAGATATG
Found at i:27182398 original size:22 final size:22
Alignment explanation
Indices: 27182368--27182411 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
27182358 CATCCATTTA
*
27182368 GCATACATTTTCTCAA-TTCAAT
1 GCATACATTAT-TCAATTTCAAT
*
27182390 GCATTCATTATTCAATTTCAAT
1 GCATACATTATTCAATTTCAAT
27182412 CAATTTGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (22 bp):
GCATACATTATTCAATTTCAAT
Found at i:27183470 original size:23 final size:22
Alignment explanation
Indices: 27183427--27183517 Score: 74
Period size: 24 Copynumber: 3.8 Consensus size: 22
27183417 GCTGATGGAT
* *
27183427 GGTAAGCTCTATTGAGATGAAAC
1 GGTAAGCTCTA-CGAGCTGAAAC
27183450 GGTAAGCTCTGACGAGCTGAAAAC
1 GGTAAGCTCT-ACGAGCTG-AAAC
* *
27183474 AGTAAGCTCTTACGAGCTGATATATT
1 GGTAAGCTC-TACGAGCTGA-A-A-C
27183500 GGTAAGCTCATACGAGCT
1 GGTAAGCTC-TACGAGCT
27183518 CTGGTGAGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
23 16 0.29
24 22 0.39
25 2 0.04
26 16 0.29
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (22 bp):
GGTAAGCTCTACGAGCTGAAAC
Found at i:27183478 original size:24 final size:24
Alignment explanation
Indices: 27183446--27183493 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
27183436 TATTGAGATG
*
27183446 AAACGGTAAGCTCTGACGAGCTGA
1 AAACAGTAAGCTCTGACGAGCTGA
*
27183470 AAACAGTAAGCTCTTACGAGCTGA
1 AAACAGTAAGCTCTGACGAGCTGA
27183494 TATATTGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (24 bp):
AAACAGTAAGCTCTGACGAGCTGA
Found at i:27191231 original size:21 final size:21
Alignment explanation
Indices: 27191199--27191259 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
27191189 CCCTTGAAAC
*
27191199 AGGGC-ACGCGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
* *
27191219 AGGGCAACACGCCCGTATGAA
1 AGGGCAACACGCCCGTGTGGA
*
27191240 AGGGCAACACGTCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
27191260 TCATTATAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:27192649 original size:44 final size:45
Alignment explanation
Indices: 27192598--27192696 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 45
27192588 CCAGGCATGG
*
27192598 TCTTACACTGAC-ACATCTCGTA-GCCGATGCATGTCTCAAACATC
1 TCTTACACTGACTACATCTCG-AGGCCGATGCATGTCACAAACATC
* * * *
27192642 TCTTACACTGGCTTACATCTCGAGGCTGATGCATGTCACAGACATG
1 TCTTACACTGAC-TACATCTCGAGGCCGATGCATGTCACAAACATC
27192688 TCTTACACT
1 TCTTACACT
27192697 AGCTCTCGTC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 11 0.23
45 1 0.02
46 35 0.74
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (45 bp):
TCTTACACTGACTACATCTCGAGGCCGATGCATGTCACAAACATC
Found at i:27192660 original size:46 final size:47
Alignment explanation
Indices: 27192611--27192790 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 47
27192601 TACACTGACA
*
27192611 CATCTCGTA-GCCGATGCATGTCTCAAACATCTCTTACACTGGCT-T
1 CATCTCGTAGGCCGATGCATGTCTCAAACATGTCTTACACTGGCTCT
* * * *
27192656 ACATCTCG-AGGCTGATGCATGTCACAGACATGTCTTACACTAGCTCT
1 -CATCTCGTAGGCCGATGCATGTCTCAAACATGTCTTACACTGGCTCT
* * * *
27192703 CGTCTC-AATGCTGATGCCATGT-TCCAAACATGGTCTTACACTGGCTCT
1 CATCTCGTAGGCCGATG-CATGTCT-CAAACAT-GTCTTACACTGGCTCT
* *
27192751 CATAAT-GT-GGCCGATGCATGTCTCAAACATGTCTTGCACT
1 CAT-CTCGTAGGCCGATGCATGTCTCAAACATGTCTTACACT
27192791 AGCACACAAA
Statistics
Matches: 109, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
45 1 0.01
46 59 0.54
47 24 0.22
48 24 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
CATCTCGTAGGCCGATGCATGTCTCAAACATGTCTTACACTGGCTCT
Found at i:27198480 original size:23 final size:24
Alignment explanation
Indices: 27198454--27198503 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
27198444 ATATTCTTAA
27198454 AAATATTTTGAATTTTGA-ATTTT
1 AAATATTTTGAATTTTGATATTTT
** *
27198477 AAATATTTTTCATTTTTATATTTT
1 AAATATTTTGAATTTTGATATTTT
27198501 AAA
1 AAA
27198504 AAATTATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (24 bp):
AAATATTTTGAATTTTGATATTTT
Found at i:27199197 original size:28 final size:29
Alignment explanation
Indices: 27199128--27199197 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 29
27199118 GATAAATATT
**
27199128 TTTAAATAAAAAAATACAAAAATTTAATG
1 TTTAAATTTAAAAATACAAAAATTTAATG
* *
27199157 TCTCAAA-TT-AAAATATAAAAATTTAA-G
1 T-TTAAATTTAAAAATACAAAAATTTAATG
27199184 TTTAAATTTAAAAA
1 TTTAAATTTAAAAA
27199198 GAATATAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 20 0.61
29 1 0.03
30 4 0.12
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (29 bp):
TTTAAATTTAAAAATACAAAAATTTAATG
Found at i:27201172 original size:48 final size:48
Alignment explanation
Indices: 27201115--27201216 Score: 159
Period size: 48 Copynumber: 2.1 Consensus size: 48
27201105 CACATGGTAG
* *
27201115 GATGCCAATGCCATATCCTGGATATGGTCTTAAATGGGATCACATATC
1 GATGCCAATGCCATATCCTAGACATGGTCTTAAATGGGATCACATATC
* *
27201163 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCTAGACATGGTCTTAAATGGGATCACATATC
*
27201211 AATGCC
1 GATGCC
27201217 GATAGCCCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCTAGACATGGTCTTAAATGGGATCACATATC
Found at i:27201235 original size:43 final size:47
Alignment explanation
Indices: 27201137--27201294 Score: 132
Period size: 48 Copynumber: 3.4 Consensus size: 47
27201127 ATATCCTGGA
* * *
27201137 TATGGTCTTAAATGGGATCACATATCGATGCCAATGCCATGTCCTAGAC
1 TATGGTCTTACATGGGATCACATATCAATGCCAAT--CATGTCCCAGAC
*
27201186 -ATGGTCTTACATGGGATCACATATCAATGCCGAT-A-G-CCCAG-C
1 TATGGTCTTACATGGGATCACATATCAATGCCAATCATGTCCCAGAC
* * * * *
27201228 TATGGTCTTACA-CGAAGTTACATATCAATGCCAAAGCCATGTCCTAGAC
1 TATGGTCTTACATGGGA-TCACATATCAATGCC-AA-TCATGTCCCAGAC
*
27201277 -ATGATCTTACATGGGATC
1 TATGGTCTTACATGGGATC
27201295 GCACATAACC
Statistics
Matches: 86, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
42 3 0.03
43 29 0.34
44 2 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 46 0.53
49 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
TATGGTCTTACATGGGATCACATATCAATGCCAATCATGTCCCAGAC
Found at i:27212572 original size:40 final size:40
Alignment explanation
Indices: 27212478--27212668 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
27212468 TGGATGAAAA
** * *
27212478 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
27212517 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
27212557 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
27212597 CCGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGC-ATCTGTGCGAGTTACT-AAAT
* * *
27212637 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGT
27212669 AGTTATATCC
Statistics
Matches: 138, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 34 0.25
40 100 0.72
41 4 0.03
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
Found at i:27220787 original size:40 final size:40
Alignment explanation
Indices: 27220693--27220883 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
27220683 TGGATGAAAA
** * *
27220693 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
27220732 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
27220772 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
27220812 CCGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGC-ATCTGTGCGAGTTACT-AAAT
* * *
27220852 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGT
27220884 AGTTATATCC
Statistics
Matches: 138, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 34 0.25
40 100 0.72
41 4 0.03
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
Found at i:27226720 original size:18 final size:18
Alignment explanation
Indices: 27226678--27226720 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
27226668 GCCCATTCCG
* *
27226678 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
27226696 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
27226714 AAGTATG
1 AAGTATG
27226721 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:27227249 original size:28 final size:28
Alignment explanation
Indices: 27227192--27227371 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
27227182 TAAATTGTGC
*
27227192 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
27227219 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
27227247 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
27227275 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
27227302 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
27227330 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
27227357 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27227372 GACTTATTAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 67 0.46
28 80 0.54
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:27227256 original size:55 final size:55
Alignment explanation
Indices: 27227192--27227371 Score: 290
Period size: 55 Copynumber: 3.3 Consensus size: 55
27227182 TAAATTGTGC
*
27227192 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
27227247 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * *
27227302 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
27227357 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27227372 GACTTATTAT
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
55 91 0.77
56 27 0.23
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:27227333 original size:83 final size:82
Alignment explanation
Indices: 27227192--27227371 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
27227182 TAAATTGTGC
*
27227192 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATATAGCACTAAGT
*
27227257 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
27227275 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATATAGCACTAAGT
*
27227340 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
27227357 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27227372 GACTTATTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATATAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:27233809 original size:18 final size:18
Alignment explanation
Indices: 27233767--27233809 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
27233757 GCCCATTCCG
* *
27233767 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
27233785 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
27233803 AAGTATG
1 AAGTATG
27233810 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:27234335 original size:28 final size:27
Alignment explanation
Indices: 27234278--27234429 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
27234268 TAAATTGTGC
*
27234278 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27234305 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27234333 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
27234360 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
27234388 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
27234415 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27234430 GACTTATTAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 67 0.56
28 52 0.44
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:27234343 original size:55 final size:55
Alignment explanation
Indices: 27234278--27234429 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
27234268 TAAATTGTGC
* *
27234278 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATAT
*
27234333 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATAT
* * *
27234388 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
27234430 GACTTATTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATAT
Found at i:27241893 original size:48 final size:48
Alignment explanation
Indices: 27241841--27241964 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 48
27241831 TCTTGAATAT
*
27241841 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCATACAA
1 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACAA
** * * *
27241889 GGTCTTACATGGGATCGTAGATCGATGCCAATGCCATGTCCTAGACAT
1 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACAA
**
27241937 GGTCTTGTATGGGATCACATATCGATGC
1 GGTCTTACATGGGATCACATATCGATGC
27241965 TGATAGCCAA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (48 bp):
GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACAA
Found at i:27244776 original size:19 final size:18
Alignment explanation
Indices: 27244754--27244840 Score: 50
Period size: 19 Copynumber: 4.6 Consensus size: 18
27244744 TTTTACGAAA
*
27244754 TTTATATTTCTTTACATTT
1 TTTATATTT-TATACATTT
*
27244773 TTTATAATTTTCTTACGACTTT
1 TTTAT-ATTTT-ATAC-A-TTT
* * * *
27244795 ATAAAATTTTATAAATTT
1 TTTATATTTTATACATTT
*
27244813 TTTATATTTCTATATATTT
1 TTTATATTT-TATACATTT
27244832 TTTA-ATTTT
1 TTTATATTTT
27244841 TATGATTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
17 1 0.02
18 13 0.24
19 19 0.35
20 10 0.19
21 6 0.11
22 5 0.09
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (18 bp):
TTTATATTTTATACATTT
Found at i:27244850 original size:18 final size:19
Alignment explanation
Indices: 27244800--27244839 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
27244790 ACTTTATAAA
*
27244800 ATTT-TATAAATTTTTTAT
1 ATTTCTATATATTTTTTAT
27244818 ATTTCTATATATTTTTTA-
1 ATTTCTATATATTTTTTAT
27244836 ATTT
1 ATTT
27244840 TTATGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTCTATATATTTTTTAT
Found at i:27244887 original size:19 final size:19
Alignment explanation
Indices: 27244858--27244918 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
27244848 TTTAAAAAAA
27244858 TTACAATTTTTTATATATTT
1 TTACAA-TTTTTATATATTT
*
27244878 TTACAATTTTTATATTTTT
1 TTACAATTTTTATATATTT
* *
27244897 TCTA-AATTTTAATAAATTT
1 T-TACAATTTTTATATATTT
27244916 TTA
1 TTA
27244919 ATATTTGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 2 0.06
19 26 0.72
20 8 0.22
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTACAATTTTTATATATTT
Found at i:27244906 original size:18 final size:19
Alignment explanation
Indices: 27244866--27244918 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 19
27244856 AATTACAATT
27244866 TTTTATATATTTTTAC-AA
1 TTTTATATATTTTTACAAA
*
27244884 TTTT-TATATTTTTTCTAAA
1 TTTTATATATTTTTAC-AAA
*
27244903 TTTTAATAAATTTTTA
1 TTTT-ATATATTTTTA
27244919 ATATTTGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 10 0.36
18 4 0.14
19 6 0.21
21 8 0.29
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTATATATTTTTACAAA
Found at i:27244924 original size:9 final size:10
Alignment explanation
Indices: 27244801--27244924 Score: 59
Period size: 9 Copynumber: 13.2 Consensus size: 10
27244791 CTTTATAAAA
*
27244801 TTTTATAAAT
1 TTTTATATAT
27244811 TTTT-TATAT
1 TTTTATATAT
*
27244820 TTCTATATAT
1 TTTTATATAT
27244830 TTTT-TA-AT
1 TTTTATATAT
*
27244838 TTTTAT-GAT
1 TTTTATATAT
* *
27244847 TTTTA-AAAA
1 TTTTATATAT
** *
27244856 AATTACA-ATT
1 TTTTATATA-T
27244866 TTTTATATAT
1 TTTTATATAT
*
27244876 TTTTACA-AT
1 TTTTATATAT
27244885 TTTTATAT-T
1 TTTTATATAT
* *
27244894 TTTTCTAAAT
1 TTTTATATAT
* *
27244904 TTTAATAAAT
1 TTTTATATAT
27244914 TTTTA-ATAT
1 TTTTATATAT
27244923 TT
1 TT
27244925 GAATTTTTTA
Statistics
Matches: 86, Mismatches: 19, Indels: 19
0.69 0.15 0.15
Matches are distributed among these distances:
8 6 0.07
9 42 0.49
10 37 0.43
11 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTTATATAT
Found at i:27245124 original size:88 final size:88
Alignment explanation
Indices: 27245030--27245230 Score: 237
Period size: 88 Copynumber: 2.3 Consensus size: 88
27245020 TGCTTTTTTC
* ** * * *
27245030 TTGAAAACGTTTGAGGTTCTTTTTGATGCATTCTGAAAGTTTAAGTACCCAATTGAGTGCAA-AA
1 TTGAAAAAGTTTGAGGGCCTTTTTGATGCATTCTAAAAGTTCAAGTACCCAAATGAGTGCAACAA
* *
27245094 AAGATAG-GAGCTTAGTTGCTTCTT
66 AA-ATAGAG-GCTTAATTACTTCTT
* * *
27245118 TTGAAAAAGTTTGAGGGCCTTTTTGATGTATTTTAAAAGTTCAAGTATCCAAATGAGTGCAACAA
1 TTGAAAAAGTTTGAGGGCCTTTTTGATGCATTCTAAAAGTTCAAGTACCCAAATGAGTGCAACAA
*
27245183 AAATAGAGGCTTAATTACTTTTT
66 AAATAGAGGCTTAATTACTTCTT
*
27245206 TTGAAAAAAATTTGAGGG-CTTTTTG
1 TTG-AAAAAGTTTGAGGGCCTTTTTG
27245231 CACCCTTAAG
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
88 79 0.81
89 18 0.19
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (88 bp):
TTGAAAAAGTTTGAGGGCCTTTTTGATGCATTCTAAAAGTTCAAGTACCCAAATGAGTGCAACAA
AAATAGAGGCTTAATTACTTCTT
Found at i:27249548 original size:54 final size:54
Alignment explanation
Indices: 27249475--27249611 Score: 265
Period size: 54 Copynumber: 2.5 Consensus size: 54
27249465 ATTGTCGTTG
27249475 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
27249529 CAGGGGATTTAGCCTGGACTGGTAATCCTGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
27249583 CAGGGGATTTAGCCTGGACTGGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
27249612 ACTGTAAGGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:27249761 original size:46 final size:46
Alignment explanation
Indices: 27249694--27250002 Score: 458
Period size: 46 Copynumber: 6.7 Consensus size: 46
27249684 TGGCAACCTG
*
27249694 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
27249740 TGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
27249786 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
27249832 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
** *
27249878 TGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
27249924 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
27249970 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
27250003 TCACGTCAAA
Statistics
Matches: 243, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 242 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:27249885 original size:138 final size:137
Alignment explanation
Indices: 27249645--27250002 Score: 498
Period size: 138 Copynumber: 2.6 Consensus size: 137
27249635 AGTGTGCTCT
27249645 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----TG---TGTGTAAGA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAATGTGTAAGA
*
27249703 CCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
*
27249768 TGGTAAC
131 TGGCAAC
*
27249775 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATGAAATGTGTAAG
*
27249840 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAGACCATGGTTGAAAGATACC
65 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
*
27249905 ATGGCAAT
130 ATGGCAAC
* * * ** * *
27249913 ATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATG-AAATGTGTAA
* * *
27249977 GACCATAGTTGAAAGACACTATGGCA
64 GACCATGGTTGAAAGATACCATGGCA
27250003 TCACGTCAAA
Statistics
Matches: 202, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
130 46 0.23
135 2 0.01
137 1 0.00
138 153 0.76
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (137 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAATGTGTAAGA
CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
TGGCAAC
Found at i:27256337 original size:39 final size:40
Alignment explanation
Indices: 27256133--27256355 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
27256123 TTGAATGCTG
* * * * * *
27256133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
27256173 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
27256213 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
27256253 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
27256293 TCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
27256332 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27256356 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
39 33 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:27256375 original size:79 final size:80
Alignment explanation
Indices: 27256208--27256390 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
27256198 GTGCGAGATA
** * *
27256208 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
27256273 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
27256288 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
27256352 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
27256367 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
27256391 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.54
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:27264111 original size:80 final size:80
Alignment explanation
Indices: 27264018--27264233 Score: 199
Period size: 80 Copynumber: 2.7 Consensus size: 80
27264008 GCTGTCCGGC
* * * *
27264018 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGACTAAGAT-CCGAAGGCCTTTGTGC
1 TAAGTCCCGAAGGCATTCGTGC-AAGTTG-ATAAATCCGGACTAAG-TCCCGAAGGCATTCGTGC
27264080 GAGATACTAAATCCGGGT
63 GAGATACTAAATCCGGGT
* * **
27264098 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TAAGTCCCGAAGGCATTCGTGCAAGTTGATAAATCCGGACTAAGTCCCGAAGGCATTCGTGCGAG
* **
27264163 TTGTTAAATCCGGGT
66 ATACTAAATCCGGGT
* * ** * * *
27264178 TACGTCCCGAAGGCA-TGGTGTGAGTT-ACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATTCGTGCAAGTTGA-TAAATCCGGACTAAGTCCCGAAGGCATT
27264234 TGAACGAGGA
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
79 35 0.31
80 71 0.62
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTCGTGCAAGTTGATAAATCCGGACTAAGTCCCGAAGGCATTCGTGCGAG
ATACTAAATCCGGGT
Found at i:27264215 original size:39 final size:40
Alignment explanation
Indices: 27264064--27264233 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
27264054 GGACTAAGAT
* * *
27264064 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
**
27264104 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
27264144 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
27264184 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
27264223 CCGAAGGCATT
1 CCGAAGGCATT
27264234 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
39 32 0.28
40 84 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:27264253 original size:79 final size:80
Alignment explanation
Indices: 27264086--27264268 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
27264076 GTGCGAGATA
** * *
27264086 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
27264151 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
27264166 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
27264230 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
27264245 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
27264269 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.54
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:27278952 original size:15 final size:15
Alignment explanation
Indices: 27278932--27278969 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
27278922 TTAGCATTTA
*
27278932 AATTTTTTAATACTT
1 AATTTTTTAACACTT
*
27278947 AA-TTTTTAACATTT
1 AATTTTTTAACACTT
27278961 AATTTTTTA
1 AATTTTTTA
27278970 TTTTTCAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTTTTTAACACTT
Found at i:27284001 original size:41 final size:41
Alignment explanation
Indices: 27283924--27284002 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
27283914 GCTATTGCAT
* *
27283924 ATTGTATCTGAGATGGGCCAAGGCCCTAAATTATATTTGAG
1 ATTGTATCCGAGATGGGCCAAGGCCCTAAATAATATTTGAG
*
27283965 ATTGTATCCGA-ATGGGGCAAGGCCC-AAACTAAATATTT
1 ATTGTATCCGAGATGGGCCAAGGCCCTAAA-T-AATATTT
27284003 AATGGGCTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 3 0.09
40 14 0.42
41 16 0.48
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (41 bp):
ATTGTATCCGAGATGGGCCAAGGCCCTAAATAATATTTGAG
Found at i:27293216 original size:14 final size:14
Alignment explanation
Indices: 27293197--27293231 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
27293187 TTAGCATTTA
*
27293197 AATTTTTAATACTT
1 AATTTTTAACACTT
*
27293211 AATTTTTAACATTT
1 AATTTTTAACACTT
27293225 AATTTTT
1 AATTTTT
27293232 TTATTTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (14 bp):
AATTTTTAACACTT
Found at i:27303321 original size:44 final size:44
Alignment explanation
Indices: 27303256--27303339 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
27303246 TTGATATCTC
* * *
27303256 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
27303300 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
27303340 TGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:27303541 original size:47 final size:47
Alignment explanation
Indices: 27303479--27303600 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
27303469 GCATTGGCAC
*
27303479 TAAGACAAGGGTACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
27303526 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
27303573 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
27303601 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:27303708 original size:55 final size:54
Alignment explanation
Indices: 27303579--27303775 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
27303569 TTGGTAAGAT
* * * *
27303579 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
27303633 AAGGAAATCATGTAAGACCATGTCAAGACATGTCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
27303688 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
27303741 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
27303776 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.27
54 41 0.33
55 41 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:27303761 original size:53 final size:53
Alignment explanation
Indices: 27303579--27303787 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 53
27303569 TTGGTAAGAT
* * *
27303579 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAG-TTCATAAGGC
* * * * *
27303633 AAGGAAATCATGTAAGACCATGTCAAGACATGTCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * *
27303688 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
* * * *
27303741 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCA
27303788 AAAAGGAAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.34
54 39 0.30
55 40 0.30
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:27305757 original size:20 final size:20
Alignment explanation
Indices: 27305732--27305795 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
27305722 CACAAACGTG
27305732 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * ** *
27305752 CCCCTGAATTGCACTTATGTG
1 CCCCTG-TTTGTACTTCGGTA
27305773 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
27305793 CCC
1 CCC
27305796 TTGAATTGCA
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.12, C:0.33, G:0.19, T:0.36
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:27305774 original size:41 final size:41
Alignment explanation
Indices: 27305715--27305871 Score: 206
Period size: 41 Copynumber: 3.8 Consensus size: 41
27305705 AGATTATTAT
*
27305715 TGAATTGCACAAACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
27305756 TGAATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
27305797 TGAATTGCACATATGTGCCCCTGTTTATACTTCAGTTCCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
27305838 CGAATTGCACTTACGTGGCCTTGTTTGTACTTCG
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCG
27305872 ATGCCCTTGA
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 100 1.00
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:27305776 original size:21 final size:21
Alignment explanation
Indices: 27305752--27305819 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
27305742 TACTTCGGTA
27305752 CCCCTGAATTGCACTTATGTG
1 CCCCTGAATTGCACTTATGTG
* * ** *
27305773 CCCCTG-TTTGTACTTCGGTA
1 CCCCTGAATTGCACTTATGTG
* *
27305793 CCCTTGAATTGCACATATGTG
1 CCCCTGAATTGCACTTATGTG
27305814 CCCCTG
1 CCCCTG
27305820 TTTATACTTC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.34
Consensus pattern (21 bp):
CCCCTGAATTGCACTTATGTG
Found at i:27305863 original size:82 final size:82
Alignment explanation
Indices: 27305714--27305884 Score: 243
Period size: 82 Copynumber: 2.1 Consensus size: 82
27305704 AAGATTATTA
* * * *
27305714 TTGAATTGCACAAACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACTTATGTGCCCCTG
1 TTGAATTGCACAAACGTGCCCCTGTTTATACTTCAGTACCCCCGAATTGCACTTACGTGCCCCTG
*
27305779 TTTGTACTTCGGTACCC
66 TTTGTACTTCGATACCC
* * * * *
27305796 TTGAATTGCACATATGTGCCCCTGTTTATACTTCAGTTCCCCCGAATTGCACTTACGTGGCCTTG
1 TTGAATTGCACAAACGTGCCCCTGTTTATACTTCAGTACCCCCGAATTGCACTTACGTGCCCCTG
*
27305861 TTTGTACTTCGATGCCC
66 TTTGTACTTCGATACCC
27305878 TTGAATT
1 TTGAATT
27305885 TTTTTTGTGC
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (82 bp):
TTGAATTGCACAAACGTGCCCCTGTTTATACTTCAGTACCCCCGAATTGCACTTACGTGCCCCTG
TTTGTACTTCGATACCC
Found at i:27306687 original size:13 final size:13
Alignment explanation
Indices: 27306669--27306693 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27306659 GCACACAAGT
27306669 GTGTGACTTGGCC
1 GTGTGACTTGGCC
27306682 GTGTGACTTGGC
1 GTGTGACTTGGC
27306694 TATGTAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.40, T:0.32
Consensus pattern (13 bp):
GTGTGACTTGGCC
Found at i:27310739 original size:17 final size:19
Alignment explanation
Indices: 27310717--27310751 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
27310707 CTAATTTAAC
27310717 CATTCTC-CAT-TTTCTCT
1 CATTCTCTCATCTTTCTCT
27310734 CATTCTCTCATCTTTCTC
1 CATTCTCTCATCTTTCTC
27310752 AAATTGTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.11, C:0.37, G:0.00, T:0.51
Consensus pattern (19 bp):
CATTCTCTCATCTTTCTCT
Found at i:27312871 original size:81 final size:81
Alignment explanation
Indices: 27312769--27313096 Score: 403
Period size: 81 Copynumber: 4.1 Consensus size: 81
27312759 AAAGTACTCC
* * * * *
27312769 CGATTTACAGAATTCCTGTTTTACCCTCAGTTTACAGAATTACTGTTTTAGCCTCGATTTATAGA
1 CGATTTATAAAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTATAGA
27312834 ATTACCGTTTTACCCT
66 ATTACCGTTTTACCCT
* * * *
27312850 CGATTTGTAAAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGA
1 CGATTTATAAAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTATAGA
27312915 ATTACCGTTTTACCCT
66 ATTACCGTTTTACCCT
* * *
27312931 C-AGTTTATAGAATTACTGTTTTACCCTC-GATTTACAAAATTACCGTTTTACCCTCGATTTGTA
1 CGA-TTTATAAAATTACTGTTTTACCCTCAG-TTTACAAAATTACTGTTTTACCCTCGATTTATA
* *
27312994 AAATTACTGTTTTACCCT
64 GAATTACCGTTTTACCCT
* * * * * *
27313012 TG-TTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTA-TCGTTTTACCCTCGATTTACAG
1 CGATTTATAAAATTACTGTTTTACCCTCAGTTTACAAAATTACT-GTTTTACCCTCGATTTATAG
*
27313075 AATTATCGTTTTACCCT
65 AATTACCGTTTTACCCT
*
27313092 TGATT
1 CGATT
27313097 GTGAAATTAC
Statistics
Matches: 215, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
80 70 0.33
81 145 0.67
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (81 bp):
CGATTTATAAAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTATAGA
ATTACCGTTTTACCCT
Found at i:27313096 original size:27 final size:27
Alignment explanation
Indices: 27312769--27313096 Score: 355
Period size: 27 Copynumber: 12.2 Consensus size: 27
27312759 AAAGTACTCC
*
27312769 CGATTTACAGAATTCCTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
27312796 C-AGTTTACAGAATTACTGTTTTAGCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
27312823 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** * *
27312850 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
27312877 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
27312904 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
27312931 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
27312958 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** *
27312985 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
27313012 TG-TTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
27313038 C-AGTTTATAAAATTA-TCGTTTTACCCT
1 CGA-TTTACAGAATTACT-GTTTTACCCT
27313065 CGATTTACAGAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
*
27313092 TGATT
1 CGATT
27313097 GTGAAATTAC
Statistics
Matches: 257, Mismatches: 34, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
26 24 0.09
27 229 0.89
28 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:27313130 original size:107 final size:105
Alignment explanation
Indices: 27312804--27313131 Score: 272
Period size: 108 Copynumber: 3.1 Consensus size: 105
27312794 CTCAGTTTAC
* * * * * **
27312804 AGAATTACTGTTTTAGCCTC-GATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCG
1 AGAATTACCGGTTTACCCTCAG-TTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCG
* ** ***
27312868 TTTTACCCTC-AGTT-TACAGAATTACT-ATTTTACCCTCGATTTAT
65 TTTTACCCTCGATTTGTA-A-AATTACTGA-AATACCCT---TGGGT
* *
27312912 AGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGT
1 AGAATTACCGGTTTACCCTCAGTTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGT
*** **
27312977 TTTACCCTCGATTTGTAAAATTACTGTTTTACCCTTGTTT
66 TTTACCCTCGATTTGTAAAATTACTGAAATACCCTTGGGT
* * *
27313017 ACAGAATTACTGGTTTACCCTCAGTTTATAAAATTA-TCGTTTTACCCTCGATTTACAGAATTAT
1 --AGAATTACCGGTTTACCCTCAGTTTATAAAATTACT-GTTTTACCCTCGATTTACAAAATTAC
* *
27313081 CGTTTTACCCTTGA-TTGTGAAATTACTGAAATACCCCTATAGGGT
63 CGTTTTACCCTCGATTTGTAAAATTACTGAAATA-CCCT-T-GGGT
27313126 AGAATT
1 AGAATT
27313132 TCCGAAATAC
Statistics
Matches: 189, Mismatches: 21, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
105 3 0.02
106 16 0.08
107 78 0.41
108 83 0.44
109 7 0.04
110 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.41
Consensus pattern (105 bp):
AGAATTACCGGTTTACCCTCAGTTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGT
TTTACCCTCGATTTGTAAAATTACTGAAATACCCTTGGGT
Found at i:27313131 original size:27 final size:27
Alignment explanation
Indices: 27313101--27313296 Score: 194
Period size: 27 Copynumber: 7.3 Consensus size: 27
27313091 TTGATTGTGA
*
27313101 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
27313128 AATTTCCGAAATACTCCTATAGGCTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
27313155 AATTACTGAAATACCCTTATAGGATAA
1 AATTACCGAAATACCCCTATAGGGTAG
* *
27313182 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
27313209 AATTATCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
27313236 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * * *
27313263 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
27313290 AATTACC
1 AATTACC
27313297 ATTTTGGCCC
Statistics
Matches: 138, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:27313165 original size:54 final size:54
Alignment explanation
Indices: 27313101--27313297 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
27313091 TTGATTGTGA
* * * * * * *
27313101 AATTACTGAAATACCCCTATAGGGTAGAATTTCCGAAATACTCCTATAGGCTAG
1 AATTACTGAAATACCCTTATAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
*
27313155 AATTACTGAAATACCCTTATAGGATAAAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* *
27313209 AATTA-TCGAAATACCCTTGTAGGGTAAAAATACCAAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* * * *
27313263 AATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTATAGGGTAAAATTACCA
27313298 TTTTGGCCCT
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 125 0.99
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
Found at i:27313538 original size:27 final size:27
Alignment explanation
Indices: 27313498--27313576 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
27313488 AGGAAGCGTT
*
27313498 CTGGTGGCTATGCCACAAATATCTGT-G
1 CTGGTGGCTCTGCCAC-AATATCTGTAG
*
27313525 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAG
* * *
27313552 TTGGTGACTCTGTCACAATATCTGT
1 CTGGTGGCTCTGCCACAATATCTGT
27313577 TGACCGATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 9 0.20
27 37 0.80
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAG
Found at i:27313942 original size:27 final size:27
Alignment explanation
Indices: 27313888--27313961 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
27313878 TAGGTGGGTT
* * *
27313888 TGCCACATTATCTG-ATTCTAGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGACTC
27313915 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
* *
27313942 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
27313962 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:27314113 original size:6 final size:6
Alignment explanation
Indices: 27314104--27314198 Score: 115
Period size: 6 Copynumber: 15.8 Consensus size: 6
27314094 CTGTCACGTA
* *
27314104 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
*
27314152 -TTACTG ATTCTG ATTCTG ATTCTG GTTCTG -TTACTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCT
27314199 CATTTTGGTT
Statistics
Matches: 78, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
5 6 0.08
6 67 0.86
7 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:27314143 original size:30 final size:30
Alignment explanation
Indices: 27314083--27314198 Score: 145
Period size: 30 Copynumber: 4.0 Consensus size: 30
27314073 ATTCACATTA
*
27314083 TGATTCTGATTCTGTCACGTAATTCTGATTC
1 TGATTCTGATTCTGTTAC-TAATTCTGATTC
27314114 TGATTCTGATTCTGTTACTAA---T-A--C
1 TGATTCTGATTCTGTTACTAATTCTGATTC
*
27314138 TGATTCTGATTCTGTTACTGATTCTGATTC
1 TGATTCTGATTCTGTTACTAATTCTGATTC
* *
27314168 TGATTCTGGTTCTGTTACTGATTCTGATTC
1 TGATTCTGATTCTGTTACTAATTCTGATTC
27314198 T
1 T
27314199 CATTTTGGTT
Statistics
Matches: 76, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
24 21 0.28
26 1 0.01
27 2 0.03
28 1 0.01
30 34 0.45
31 17 0.22
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.48
Consensus pattern (30 bp):
TGATTCTGATTCTGTTACTAATTCTGATTC
Found at i:27314145 original size:24 final size:24
Alignment explanation
Indices: 27314107--27314198 Score: 132
Period size: 24 Copynumber: 3.8 Consensus size: 24
27314097 TCACGTAATT
*
27314107 CTGATTCTGATTCTGATTCTGTTA
1 CTGATACTGATTCTGATTCTGTTA
*
27314131 CTAATACTGATTCTGATTCTGTTA
1 CTGATACTGATTCTGATTCTGTTA
*
27314155 CTGATTCTGATTCTGATTCTGGTT-
1 CTGATACTGATTCTGATTCT-GTTA
*
27314179 CTGTTACTGATTCTGATTCT
1 CTGATACTGATTCTGATTCT
27314199 CATTTTGGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 58 0.95
25 3 0.05
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.49
Consensus pattern (24 bp):
CTGATACTGATTCTGATTCTGTTA
Found at i:27314208 original size:30 final size:30
Alignment explanation
Indices: 27314140--27314209 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
27314130 ACTAATACTG
* *
27314140 ATTCTGATTCTGTTACTGATTCTGATTCTG
1 ATTCTGGTTCTGTTACTGATTCTGATTCTC
27314170 ATTCTGGTTCTGTTACTGATTCTGATTCTC
1 ATTCTGGTTCTGTTACTGATTCTGATTCTC
*
27314200 ATTTTGGTTC
1 ATTCTGGTTC
27314210 CAATTCTGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.51
Consensus pattern (30 bp):
ATTCTGGTTCTGTTACTGATTCTGATTCTC
Found at i:27314219 original size:30 final size:30
Alignment explanation
Indices: 27314152--27314219 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
27314142 TCTGATTCTG
* **
27314152 TTACTGATTCTGATTCTGATTCTGGTTCTG
1 TTACTGATTCTGATTCTCATTCTGGTTCAA
*
27314182 TTACTGATTCTGATTCTCATTTTGGTTCCAA
1 TTACTGATTCTGATTCTCATTCTGGTT-CAA
27314213 TT-CTGAT
1 TTACTGAT
27314220 AATGTTTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 30 0.91
31 3 0.09
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.50
Consensus pattern (30 bp):
TTACTGATTCTGATTCTCATTCTGGTTCAA
Found at i:27316247 original size:27 final size:27
Alignment explanation
Indices: 27316217--27316564 Score: 332
Period size: 27 Copynumber: 12.9 Consensus size: 27
27316207 GTACTCCTGA
* *
27316217 TTTACAGAATTACCATTTTACCCCCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
*
27316244 TTTACAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
* * * *
27316270 ATTTATAGAATTATCGTTTTACGCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
27316299 TTGTA-A-AATTACCGTTTTACCCTCAA
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
27316325 TTTATAGAATTACCGTTTTACCCTCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
**
27316352 TTTACAGAATTACTATTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
27316378 ATTTACAGAATTACTGTTTTACTCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
27316406 TTTACAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
27316432 ATTTATAGAATTACCGTTTTACCCTCAA
1 -TTTACAGAATTACCGTTTTACCCTCAG
** * ** *
27316460 TTTGTAAAATTACTATTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
* * *
27316486 ATTTATAGAATTACTGGTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
* *
27316514 TTTACAAAATTATCGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
*
27316540 ATTTACAGAATTATCGTTTTACCCT
1 -TTTACAGAATTACCGTTTTACCCT
27316565 TGATTGTGAA
Statistics
Matches: 270, Mismatches: 38, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.01
26 8 0.03
27 253 0.94
28 5 0.02
29 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
TTTACAGAATTACCGTTTTACCCTCAG
Found at i:27316564 original size:54 final size:54
Alignment explanation
Indices: 27316215--27316564 Score: 443
Period size: 54 Copynumber: 6.5 Consensus size: 54
27316205 AAGTACTCCT
* * * *
27316215 GATTTACAGAATTACCATTTTACCCCCAGTTTACAGAATTACTGTTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* * ** *
27316269 GATTTATAGAATTATCGTTTTACGCTC-GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACTGTTTTACCCTC
* * *
27316323 AATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* * * *
27316377 GATTTACAGAATTACTGTTTTACTCTCAGTTTACAGAATTACTGTTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* ** * *
27316431 GATTTATAGAATTACCGTTTTACCCTCAATTTGTAAAATTACTATTTTACCCTT
1 GATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* *
27316485 GATTTATAGAATTACTGGTTTACCCTCAGTTTACAAAATTA-TCGTTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACT-GTTTTACCCTC
* *
27316539 GATTTACAGAATTATCGTTTTACCCT
1 GATTTATAGAATTACCGTTTTACCCT
27316565 TGATTGTGAA
Statistics
Matches: 251, Mismatches: 42, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
53 2 0.01
54 248 0.99
55 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (54 bp):
GATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
Found at i:27316604 original size:27 final size:27
Alignment explanation
Indices: 27316574--27316769 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
27316564 TTGATTGTGA
*
27316574 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
27316601 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
27316628 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
27316655 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
27316682 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
27316709 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
27316736 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
27316763 AATTACC
1 AATTACC
27316770 ATTTTGGCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:27317011 original size:27 final size:26
Alignment explanation
Indices: 27316972--27317050 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
27316962 GGAAGCGTTT
*
27316972 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
*
27316999 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TC
* *
27317026 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
27317051 GATCGATCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 10 0.21
27 37 0.79
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:27317170 original size:22 final size:22
Alignment explanation
Indices: 27317138--27317196 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
27317128 CCCGTTATTA
*
27317138 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * *
27317160 ATGGCTTTGTGCCATCTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
27317182 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
27317197 ACTTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:27317586 original size:6 final size:6
Alignment explanation
Indices: 27317577--27317714 Score: 133
Period size: 6 Copynumber: 22.8 Consensus size: 6
27317567 CTGTCACGTA
* *
27317577 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
27317625 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
27317674 ATTCTG ATTCTG ATTCTG -TTATTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
27317715 CATTTTGGTT
Statistics
Matches: 109, Mismatches: 12, Indels: 22
0.76 0.08 0.15
Matches are distributed among these distances:
5 8 0.07
6 93 0.85
7 6 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:27317651 original size:61 final size:61
Alignment explanation
Indices: 27317556--27317714 Score: 266
Period size: 61 Copynumber: 2.6 Consensus size: 61
27317546 ATTCACATTA
*
27317556 TGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
27317617 TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
* * *
27317678 TGATTCTGATTCTGTTA-TTGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCT
27317715 CATTTTGGTT
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
60 18 0.19
61 75 0.81
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (61 bp):
TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
Found at i:27317735 original size:30 final size:30
Alignment explanation
Indices: 27317556--27317714 Score: 239
Period size: 30 Copynumber: 5.2 Consensus size: 30
27317546 ATTCACATTA
*
27317556 TGATTCTGATTCTGTCACGTAATTCTGATTC
1 TGATTCTGATTCTGTTAC-TAATTCTGATTC
*
27317587 TGATTCTGATTCTGTTACTAATACTGATTC
1 TGATTCTGATTCTGTTACTAATTCTGATTC
*
27317617 TGATTCTGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGATTCTGTTA-CTAATTCTGATTC
27317648 TGATTCTGATTCTGTTACTAATAT-TGATTC
1 TGATTCTGATTCTGTTACTAAT-TCTGATTC
* *
27317678 TGATTCTGATTCTGTTATTGATTCTGATTC
1 TGATTCTGATTCTGTTACTAATTCTGATTC
27317708 TGATTCT
1 TGATTCT
27317715 CATTTTGGTT
Statistics
Matches: 118, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
29 1 0.01
30 71 0.60
31 46 0.39
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (30 bp):
TGATTCTGATTCTGTTACTAATTCTGATTC
Found at i:27321039 original size:28 final size:27
Alignment explanation
Indices: 27320982--27321133 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
27320972 TAAATTGTGC
* *
27320982 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27321009 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27321037 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
27321064 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
27321092 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
27321119 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27321134 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:27321047 original size:55 final size:55
Alignment explanation
Indices: 27320982--27321133 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
27320972 TAAATTGTGC
* *
27320982 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
27321037 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
27321092 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
27321134 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:27334576 original size:40 final size:40
Alignment explanation
Indices: 27334509--27334755 Score: 304
Period size: 40 Copynumber: 6.2 Consensus size: 40
27334499 CCTTCGGAGT
** * *
27334509 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
27334548 TTAGCCTGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
27334588 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
27334627 TTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
27334667 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
27334707 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGAC
27334747 TTAGCCCGG
1 TTAGCCCGG
27334756 TTATCATCCG
Statistics
Matches: 184, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
39 44 0.24
40 140 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:27334630 original size:79 final size:78
Alignment explanation
Indices: 27334532--27334756 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 78
27334522 GCCACTAGCT
* *
27334532 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
27334597 TATAATAACTCGCA
65 TATAATAACTCGCA
* * *
27334611 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
27334676 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
* * ** *
27334691 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
27334755 GT
64 GT
27334757 TATCATCCGA
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 64 0.50
80 64 0.50
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:27342713 original size:48 final size:48
Alignment explanation
Indices: 27342622--27342842 Score: 288
Period size: 48 Copynumber: 4.7 Consensus size: 48
27342612 TATCATATCG
**
27342622 ATGCCATGTCCCAGACATGG---T-CATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
** * * *
27342666 ACACCATATCCCAGATATGGTCTTACATGGGATCGCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
27342714 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
** * * *
27342762 ATGCCATGTCTTAGACATGGTCTTACTTAGGATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
27342810 GTGCCATGTCCCATACATGGTCTTACATGGGAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGGAT
27342843 TTCAATGCCA
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.11
47 1 0.01
48 133 0.89
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:27342867 original size:37 final size:37
Alignment explanation
Indices: 27342826--27342910 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
27342816 TGTCCCATAC
* *
27342826 ATGGTCTTACATGGGATTTCAATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATTACAATGCCATAGCCCAGCT
* * *
27342863 ATGGTCTTACATGTCATTACGATGCCATAGCCTAGCT
1 ATGGTCTTACATGGCATTACAATGCCATAGCCCAGCT
27342900 ATGGTCTTACA
1 ATGGTCTTACA
27342911 CTTACTCAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (37 bp):
ATGGTCTTACATGGCATTACAATGCCATAGCCCAGCT
Found at i:27345420 original size:49 final size:48
Alignment explanation
Indices: 27345330--27345464 Score: 189
Period size: 49 Copynumber: 2.8 Consensus size: 48
27345320 CAGTTAATGA
* **
27345330 GAGCCAATGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGT
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATACAT
* *
27345378 GAGCCAGTGTAAGACCATGTTTTGGGACATGGCATCGGCGTTGATACAT
1 GAGCCAATGTAAGACCATG-TCTGGGACATGGCATCGGCGTTGATACAT
* * *
27345427 GTGCCAATGTAAGACCATATCTGGGATATGGCATCGGC
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
27345465 ATCGGTATGT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
48 35 0.46
49 41 0.54
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATACAT
Found at i:27348037 original size:40 final size:40
Alignment explanation
Indices: 27347943--27348167 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
27347933 TATTCGAATG
* *
27347943 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * *
27347984 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* * *
27348024 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
27348064 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
27348104 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
*
27348144 ACATCCGGGCTAAGA-CCTGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
27348168 CTTGCGCAAG
Statistics
Matches: 156, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
39 3 0.02
40 123 0.79
41 29 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:27348127 original size:80 final size:80
Alignment explanation
Indices: 27347943--27348203 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
27347933 TATTCGAATG
* * * *
27347943 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
27348008 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
27348024 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
27348089 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
27348104 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCTGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
27348169 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
27348183 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
27348204 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 93 0.62
81 31 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:27348167 original size:120 final size:121
Alignment explanation
Indices: 27347943--27348160 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
27347933 TATTCGAATG
** * *
27347943 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
27348008 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* *
27348064 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
27348127 CATTTATGCTAG-TGACCACATCCGGGCTAAGACC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACC
27348161 TGAAGGCCTT
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.04
120 50 0.60
121 31 0.37
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:27358419 original size:18 final size:18
Alignment explanation
Indices: 27358393--27358427 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27358383 CTGATATCTT
*
27358393 TTTCAAAACTGTTTTCAC
1 TTTCAAAACTATTTTCAC
*
27358411 TTTCTAAACTATTTTCA
1 TTTCAAAACTATTTTCA
27358428 TCTCTGTAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.49
Consensus pattern (18 bp):
TTTCAAAACTATTTTCAC
Found at i:27358747 original size:42 final size:42
Alignment explanation
Indices: 27358660--27358743 Score: 152
Period size: 41 Copynumber: 2.0 Consensus size: 42
27358650 ACACTTATTC
*
27358660 ATTTTACAAATGTTTTCTATCATCCATAATCTTAAATAATGA
1 ATTTTACAAATGTTTTCTATCATCCATAATCTTAAACAATGA
27358702 ATTTTA-AAATGTTTTCTATCATCCATAATCTTAAACAATGA
1 ATTTTACAAATGTTTTCTATCATCCATAATCTTAAACAATGA
27358743 A
1 A
27358744 ATTTCTTACT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 35 0.85
42 6 0.15
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (42 bp):
ATTTTACAAATGTTTTCTATCATCCATAATCTTAAACAATGA
Found at i:27362756 original size:40 final size:39
Alignment explanation
Indices: 27362658--27362920 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
27362648 TCCTCGTTCA
* * * *
27362658 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
27362697 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
27362736 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
27362776 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
27362816 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
27362856 AAATGCCTTC-GGATCTTAGTCCGGATGTATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
27362897 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
27362921 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:27362880 original size:120 final size:119
Alignment explanation
Indices: 27362658--27362920 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
27362648 TCCTCGTTCA
* * *
27362658 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
27362723 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATGTAATAACTTAGCAC
* * * * *
27362776 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
27362841 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATGTATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATGTAATAACTTAGCAC
*
27362897 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
27362921 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATGTAATAACTTAGCAC
Found at i:27362929 original size:41 final size:41
Alignment explanation
Indices: 27362852--27362929 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
27362842 TTTGTATCTC
* * *
27362852 GCACAAATGCCTTCGGATCTTAGTCCGGATGTATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
27362893 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGA-AGCATTCA
27362930 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
Found at i:27380890 original size:29 final size:29
Alignment explanation
Indices: 27380847--27380935 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 29
27380837 GAAAGCGTGT
* **
27380847 ATATGAATGTGATTTAGGCCTGATGGGCC
1 ATATGAATTTGATTTAGGCCCAATGGGCC
*
27380876 GTATGAATTTGATTTAGGCCCAATGGGCC
1 ATATGAATTTGATTTAGGCCCAATGGGCC
* * * *
27380905 ATATGAATTAGA-TTGGGCCTAGTGGGCC
1 ATATGAATTTGATTTAGGCCCAATGGGCC
27380933 ATA
1 ATA
27380936 CGCATGTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 16 0.31
29 35 0.69
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATTTGATTTAGGCCCAATGGGCC
Found at i:27385429 original size:28 final size:29
Alignment explanation
Indices: 27385349--27385441 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
27385339 AGCATGTATT
*
27385349 TGAATGTGATTTGGGCCTAATGGGCCGTA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
27385378 TGAATGTGATTTGGGCCTAGTGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
27385407 TGAATGAGA-TTGGGCCTAATGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
27385435 TGCATGT
1 TGAATGT
27385442 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 23 0.40
29 35 0.60
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (29 bp):
TGAATGTGATTTGGGCCTAATGGGCCATA
Found at i:27391754 original size:15 final size:15
Alignment explanation
Indices: 27391734--27391768 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
27391724 TAAAACCTTT
27391734 GCCTCGGCTTCCATC
1 GCCTCGGCTTCCATC
27391749 GCCTCGGCTTCCATC
1 GCCTCGGCTTCCATC
27391764 GCCTC
1 GCCTC
27391769 TTAACTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.06, C:0.49, G:0.20, T:0.26
Consensus pattern (15 bp):
GCCTCGGCTTCCATC
Found at i:27392731 original size:25 final size:25
Alignment explanation
Indices: 27392703--27392770 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
27392693 AGCTTCTCCA
* **
27392703 AGCTGAATAACGGTAAGCTCATGTG
1 AGCTGAATAACGGTAACCTCAAATG
*
27392728 AGCTGAGTATAC-GTAACCTCAAATG
1 AGCTGAATA-ACGGTAACCTCAAATG
*
27392753 AGCTGAA-ATCGGTAACCT
1 AGCTGAATAACGGTAACCT
27392771 TAATGACATG
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 1 0.03
24 8 0.23
25 24 0.69
26 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.24
Consensus pattern (25 bp):
AGCTGAATAACGGTAACCTCAAATG
Found at i:27395529 original size:27 final size:27
Alignment explanation
Indices: 27395499--27395568 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
27395489 TTTACCAAAG
27395499 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
* *
27395526 TTACCAAAATACCCTTGGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
*
27395553 TTACGAAAATACCCCT
1 TTACCAAAATACCCCT
27395569 GTAGGGTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
TTACCAAAATACCCCTAGTTTGTAAAA
Found at i:27395581 original size:27 final size:26
Alignment explanation
Indices: 27395551--27395880 Score: 365
Period size: 27 Copynumber: 12.2 Consensus size: 26
27395541 TGGTTTGTAA
27395551 AATTACGAAAATACCCCTGTAGGGTAG
1 AATTACG-AAATACCCCTGTAGGGTAG
*
27395578 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* * *
27395605 AATTACTAAAATACCCCTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
27395632 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* * *
27395659 AATTACTGAAATACTCCTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
27395686 AATTACTGAAATACCTCTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* * *
27395713 AATTACTGAAATACCCTTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* * *
27395740 AATCACCGAAATACCCCTATAGGGTAT
1 AATTA-CGAAATACCCCTGTAGGGTAG
27395767 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* *
27395794 AATTACCAAAATACCCCTATAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
27395821 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
27395848 AAATATC-AGAATACCCCTGTAGGGTAG
1 AATTA-CGA-AATACCCCTGTAGGGTAG
27395875 AATTAC
1 AATTAC
27395881 CGAGAATCTT
Statistics
Matches: 263, Mismatches: 35, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.01
27 257 0.98
28 3 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (26 bp):
AATTACGAAATACCCCTGTAGGGTAG
Found at i:27395881 original size:81 final size:81
Alignment explanation
Indices: 27395551--27395881 Score: 416
Period size: 81 Copynumber: 4.1 Consensus size: 81
27395541 TGGTTTGTAA
* * * *
27395551 AATTACGAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACTA-AA
1 AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTAC-AGAA
* *
27395615 ATACCCCTATAAGGTAG
65 ATACCCCTGTAGGGTAG
* * * * *
27395632 AATTATCAAAATACCCCTGTAGGGTAGAATTACTGAAATACTCC-TATAAGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATAC-CCTTATAGGGTAGAATTACAGAA
*
27395696 ATACCTCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
** * * * * * *
27395713 AATTACTGAAATACCCTTATAAGGTAGAATCACCGAAATACCCCTATAGGGTATAATTACCGAAA
1 AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTACAGAAA
27395778 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* *
27395794 AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCAG-A
1 AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTA-CAGAA
27395858 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
27395875 AATTACC
1 AATTACC
27395882 GAGAATCTTG
Statistics
Matches: 216, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 210 0.97
82 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTACAGAAA
TACCCCTGTAGGGTAG
Found at i:27398377 original size:27 final size:27
Alignment explanation
Indices: 27398347--27398412 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 27
27398337 ACCAAAGTTG
27398347 CCAAAATACCCCTAGTTTGTAAAATTA
1 CCAAAATACCCCTAGTTTGTAAAATTA
* *
27398374 CC-AAATACCCTTGGTTTGTAAAATTA
1 CCAAAATACCCCTAGTTTGTAAAATTA
*
27398400 CGAAAATACCCCT
1 CCAAAATACCCCT
27398413 GTAGGGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (27 bp):
CCAAAATACCCCTAGTTTGTAAAATTA
Found at i:27398425 original size:27 final size:26
Alignment explanation
Indices: 27398395--27398741 Score: 289
Period size: 27 Copynumber: 13.2 Consensus size: 26
27398385 TGGTTTGTAA
27398395 AATTACGAAAATACCCCTGTAGGGTAG
1 AATTACG-AAATACCCCTGTAGGGTAG
*
27398422 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* * *
27398449 AATTACTAAAATA-CCCTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
27398475 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* * * *
27398502 AATTACTGAAGTACTCCTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
27398529 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* * *
27398556 AATTACTGAAATACCTCTATAAGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
27398583 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* *
27398610 AATTACCAAA-A------TA-CGTAG
1 AATTACGAAATACCCCTGTAGGGTAG
27398628 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* * *
27398655 AATTACCGAAATACCCTTATAGGGTAA
1 AATTA-CGAAATACCCCTGTAGGGTAG
* * *
27398682 AAATACTGGAATACCCCTGTATGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* * * * *
27398709 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTA-CGAAATACCCCTGTAGGGTAG
27398736 AATTAC
1 AATTAC
27398742 CATTTTGCCC
Statistics
Matches: 256, Mismatches: 45, Indels: 39
0.75 0.13 0.11
Matches are distributed among these distances:
18 10 0.04
19 5 0.02
20 1 0.00
25 1 0.00
26 30 0.12
27 205 0.80
28 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (26 bp):
AATTACGAAATACCCCTGTAGGGTAG
Found at i:27398426 original size:53 final size:52
Alignment explanation
Indices: 27398369--27398623 Score: 228
Period size: 54 Copynumber: 4.8 Consensus size: 52
27398359 TAGTTTGTAA
* ** * *
27398369 AATTACCAAATACCCTTGGT-TTGTAAAATTACGAAAATACCCCTGTAGGGTAG
1 AATTACAAAATACCCTT-GTAGGGTAAAATTACGAAAATA-CCCTATAAGGTAG
* * *
27398422 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCTATAAGGTAG
1 AATTAC-AAAATACCCTTGTAGGGTAAAATTACGAAAATACCCTATAAGGTAG
* * *
27398475 AATTATCAAAATACCCCTGTAGGGTAGAATTACTG-AAGTACTCCTATAAGGTAG
1 AATTA-CAAAATACCCTTGTAGGGTAAAATTAC-GAAAATAC-CCTATAAGGTAG
* * *
27398529 AATTACCGAAATACCCCTGTAGGGTAGAATTACTG-AAATACCTCTATAAGGTAG
1 AATTA-CAAAATACCCTTGTAGGGTAAAATTAC-GAAAATACC-CTATAAGGTAG
** * * *
27398583 AATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
1 AATTA-CAAAATACCCTTGTAGGGTAAAATTACGAAAATAC
27398624 GTAGAATTAC
Statistics
Matches: 178, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
53 54 0.30
54 124 0.70
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (52 bp):
AATTACAAAATACCCTTGTAGGGTAAAATTACGAAAATACCCTATAAGGTAG
Found at i:27398454 original size:54 final size:53
Alignment explanation
Indices: 27398395--27398714 Score: 354
Period size: 54 Copynumber: 6.1 Consensus size: 53
27398385 TGGTTTGTAA
* * *
27398395 AATTACGAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
1 AATTACG-AAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
27398449 AATTACTAAAATA-CCCTATAAGGTAGAATTA-TCAAAATACCCCTGTAGGGTAG
1 AATTAC-GAAATACCCCTATAAGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * *
27398502 AATTACTGAAGTACTCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTAC-GAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
27398556 AATTACTGAAATACCTCTATAAGGTAGAATTATTGAAATACCCCTGTAGGGTAG
1 AATTAC-GAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
27398610 AATTAC-CAA-A-----AT-ACGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * *
27398655 AATTACCGAAATACCCTTATAGGGTAAAAATACTGGAATACCCCTGTATGGTAG
1 AATTA-CGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
27398709 AATTAC
1 AATTAC
27398715 CGAGATAACC
Statistics
Matches: 228, Mismatches: 25, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
45 36 0.16
46 3 0.01
47 2 0.01
48 1 0.00
51 1 0.00
52 3 0.01
53 48 0.21
54 134 0.59
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (53 bp):
AATTACGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:27398643 original size:45 final size:45
Alignment explanation
Indices: 27398579--27398668 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
27398569 CCTCTATAAG
*
27398579 GTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
*
27398624 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
27398669 CCTTATAGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (45 bp):
GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
Found at i:27398695 original size:72 final size:72
Alignment explanation
Indices: 27398552--27398687 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
27398542 CCCCTGTAGG
* ** * * *
27398552 GTAGAATTACTGAAATACCTCTATAAGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACC
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACC
27398617 AAAATAC
66 AAAATAC
* * *
27398624 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAAAAATAC
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATAC
27398688 TGGAATACCC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 55 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (72 bp):
GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACC
AAAATAC
Found at i:27398696 original size:99 final size:99
Alignment explanation
Indices: 27398525--27398715 Score: 294
Period size: 99 Copynumber: 1.9 Consensus size: 99
27398515 CTCCTATAAG
* * * *
27398525 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTCTATAAGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTATAAGGTAAAAATACT
27398590 GAAATACCCCTGTAGGGTAGAATTACCAAAATAC
66 GAAATACCCCTGTAGGGTAGAATTACCAAAATAC
* *
27398624 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC-CTTATAGGGTAAAAATAC
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTC-TATAAGGTAAAAATAC
* *
27398688 TGGAATACCCCTGTATGGTAGAATTACC
65 TGAAATACCCCTGTAGGGTAGAATTACC
27398716 GAGATAACCT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 1 0.01
99 82 0.99
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (99 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTATAAGGTAAAAATACT
GAAATACCCCTGTAGGGTAGAATTACCAAAATAC
Found at i:27398734 original size:126 final size:126
Alignment explanation
Indices: 27398498--27398743 Score: 321
Period size: 126 Copynumber: 2.0 Consensus size: 126
27398488 CCCCTGTAGG
* * * * *
27398498 GTAGAATTACTGAAGTACTCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACT
* ** * *
27398563 GAAATACCTCTATAAGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
66 GAAATACCCCTATAAGGTAGAATTACCGAAATAACCCTGTAGGGTAAAATTACCAAAATAC
* * *
27398624 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAAAAATACT
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACT
* * * * * *
27398689 GGAATACCCCTGTATGGTAGAATTACCGAGATAACCTTGTGGGGTAAAATTACCA
66 GAAATACCCCTATAAGGTAGAATTACCGAAATAACCCTGTAGGGTAAAATTACCA
27398744 TTTTGCCCCT
Statistics
Matches: 101, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
126 101 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (126 bp):
GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACT
GAAATACCCCTATAAGGTAGAATTACCGAAATAACCCTGTAGGGTAAAATTACCAAAATAC
Found at i:27399003 original size:24 final size:24
Alignment explanation
Indices: 27398946--27399018 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
27398936 AGGAAGTGCG
**
27398946 AAAAG-GGCTTTGCCCCAGATTACC
1 AAAAGAGGCTTTGCCCCAG-TTATT
27398970 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATT
**
27398994 AAAAGAGGCTAGGCCTCCAGTTATT
1 AAAAGAGGCTTTGCC-CCAGTTATT
27399019 TGATAAAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 18 0.44
25 23 0.56
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATT
Found at i:27402015 original size:27 final size:28
Alignment explanation
Indices: 27401995--27402052 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
27401985 CTAATCCTTG
* *
27401995 AACCCCAAACTCG-AGCTCTAAACCTCA
1 AACCCAAAACTCGTAACTCTAAACCTCA
27402022 AACCCAAAACTCGTAACTCTAAACC-CA
1 AACCCAAAACTCGTAACTCTAAACCTCA
27402049 AACC
1 AACC
27402053 TTGAATCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 18 0.64
28 10 0.36
ACGTcount: A:0.41, C:0.40, G:0.05, T:0.14
Consensus pattern (28 bp):
AACCCAAAACTCGTAACTCTAAACCTCA
Found at i:27404477 original size:17 final size:16
Alignment explanation
Indices: 27404457--27404501 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
27404447 AAAAATTTGT
27404457 GAGCTCACCAAATGTGC
1 GAGCTCACCAAAT-TGC
* *
27404474 GAGCTCTACAAAATTGT
1 GAGCTC-ACCAAATTGC
27404491 GAGCTCACCAA
1 GAGCTCACCAA
27404502 GACTACGAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 4 0.17
17 14 0.58
18 6 0.25
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (16 bp):
GAGCTCACCAAATTGC
Found at i:27404511 original size:34 final size:35
Alignment explanation
Indices: 27404448--27404513 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
27404438 ATCCAGAAGA
* *
27404448 AAAATTTGTGAGCTCACCAAATGTGCGAGCTCTAC
1 AAAATTTGTGAGCTCACCAAATCTACGAGCTCTAC
27404483 AAAA-TTGTGAGCTCACCAAGA-CTACGAGCTC
1 AAAATTTGTGAGCTCACCAA-ATCTACGAGCTC
27404514 CTTACCTTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (35 bp):
AAAATTTGTGAGCTCACCAAATCTACGAGCTCTAC
Found at i:27420139 original size:43 final size:43
Alignment explanation
Indices: 27420073--27420259 Score: 275
Period size: 43 Copynumber: 4.3 Consensus size: 43
27420063 CCGCTATAGG
* *
27420073 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAC
* *
27420116 AAACACCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAA
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAC
* * *
27420159 AAATGCCGTTAAAGGCCATGACCTTTAGCGGTGCTTCTCCCAC
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAC
* *
27420202 AAACGTCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAA
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAC
* *
27420245 AAATGCCTCTAAAGG
1 AAACGCCGCTAAAGG
27420260 TCATAAAATT
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 127 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAC
Found at i:27420462 original size:16 final size:16
Alignment explanation
Indices: 27420443--27420476 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
27420433 CCAAAAATCT
27420443 AACAAAATACA-AATAG
1 AACAAAATA-ATAATAG
27420459 AACAAAATAATAATAG
1 AACAAAATAATAATAG
27420475 AA
1 AA
27420477 TGTACACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.15
Consensus pattern (16 bp):
AACAAAATAATAATAG
Found at i:27421449 original size:22 final size:22
Alignment explanation
Indices: 27421424--27421467 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27421414 TATTTATTGT
*
27421424 TATTTAAAAAAATTATATATAA
1 TATTTAAAAAAATTAAATATAA
* *
27421446 TATTTATAAATATTAAATATAA
1 TATTTAAAAAAATTAAATATAA
27421468 AATATTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTTAAAAAAATTAAATATAA
Found at i:27422014 original size:29 final size:30
Alignment explanation
Indices: 27421972--27422033 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
27421962 TTTTATACTG
27421972 GAATAACATTGACTACATTAAAAAATT-CT
1 GAATAACATTGACTACATTAAAAAATTGCT
*
27422001 GAATAACATTGACTACATTTAAAAATTGCT
1 GAATAACATTGACTACATTAAAAAATTGCT
27422031 GAA
1 GAA
27422034 ATCCAGAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.31
Consensus pattern (30 bp):
GAATAACATTGACTACATTAAAAAATTGCT
Found at i:27427041 original size:7 final size:7
Alignment explanation
Indices: 27427029--27427135 Score: 51
Period size: 7 Copynumber: 15.1 Consensus size: 7
27427019 ACTAATTAAT
27427029 CTAAACC
1 CTAAACC
27427036 CTAAACC
1 CTAAACC
*
27427043 TCTTAACCC
1 -C-TAAACC
*
27427052 CT-ATCC
1 CTAAACC
*
27427058 CATAAACA
1 C-TAAACC
27427066 CTAAACC
1 CTAAACC
27427073 CTAAACC
1 CTAAACC
*
27427080 CTTAA-C
1 CTAAACC
* *
27427086 TTTAACC
1 CTAAACC
*
27427093 CCAAACC
1 CTAAACC
*
27427100 CTTACACC
1 C-TAAACC
*
27427108 TTAAACTC
1 CTAAAC-C
27427116 C--AACC
1 CTAAACC
*
27427121 CTAACCC
1 CTAAACC
27427128 CTAAACC
1 CTAAACC
27427135 C
1 C
27427136 ATAATTCATC
Statistics
Matches: 74, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
5 2 0.03
6 12 0.16
7 45 0.61
8 10 0.14
9 5 0.07
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:27427201 original size:24 final size:24
Alignment explanation
Indices: 27427170--27427215 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
27427160 ACTAGTTAAC
*
27427170 TCTTAAACCTTAAACCCTAAACCA
1 TCTTAAACCATAAACCCTAAACCA
*
27427194 TCTTAAACCATAAACCTTAAAC
1 TCTTAAACCATAAACCCTAAAC
27427216 TATAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.26
Consensus pattern (24 bp):
TCTTAAACCATAAACCCTAAACCA
Found at i:27427435 original size:41 final size:41
Alignment explanation
Indices: 27427378--27427586 Score: 285
Period size: 41 Copynumber: 5.1 Consensus size: 41
27427368 GTTATATGAC
*
27427378 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAGTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
27427419 TTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
27427460 TTTTAACGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
27427501 TTTTAACGGCGTTTTACCAAAAGCGTCGCTAATGCTC-CGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
** * *
27427541 TTTTAGCGGCGTTTTAGTAAAAAACGCCGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTA-CCAAAAGCGCCGCTAATGCTCTG-GT
27427584 TTT
1 TTT
27427587 ACAATTTTTG
Statistics
Matches: 148, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 17 0.11
41 126 0.85
43 5 0.03
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:27428575 original size:30 final size:31
Alignment explanation
Indices: 27428541--27428603 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
27428531 ACTTATTTTA
27428541 TTGTTAA-TTTTGTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTGTTATTATTTTAGAA-GCAT
*
27428571 TTGTTAATTTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTTGTTATTATTTTAGAAGCAT
27428602 TT
1 TT
27428604 TCTTGATAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 21 0.70
32 2 0.07
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.60
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAGAAGCAT
Found at i:27445099 original size:25 final size:24
Alignment explanation
Indices: 27445065--27445116 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
27445055 ACAGACGCAA
27445065 CTCTTTATGAACGTCCTGATATAGG
1 CTCTTTATGAACGTCCTGATAT-GG
* *
27445090 CTCTTTATGAGCTTCCTGATATGG
1 CTCTTTATGAACGTCCTGATATGG
27445114 CTC
1 CTC
27445117 ACTTGAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (24 bp):
CTCTTTATGAACGTCCTGATATGG
Found at i:27450949 original size:21 final size:21
Alignment explanation
Indices: 27450923--27450963 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
27450913 TTTCCAATAC
27450923 CAAATCA-TAGTCGAATCATTT
1 CAAATCACTA-TCGAATCATTT
*
27450944 CAAATCACTATCGACTCATT
1 CAAATCACTATCGAATCATT
27450964 GTCGAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (21 bp):
CAAATCACTATCGAATCATTT
Found at i:27457801 original size:13 final size:13
Alignment explanation
Indices: 27457783--27457807 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27457773 AACGAAGCAA
27457783 GACACGGCCGTGC
1 GACACGGCCGTGC
27457796 GACACGGCCGTG
1 GACACGGCCGTG
27457808 TGCACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:27464101 original size:34 final size:34
Alignment explanation
Indices: 27464053--27464121 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
27464043 TATGGTAATT
27464053 AGACCATTAAGAAAAGTTAGTAGATATTTTTATG
1 AGACCATTAAGAAAAGTTAGTAGATATTTTTATG
*
27464087 AGACCATTAGGAAAAGTTAGTAGATATTTTTATG
1 AGACCATTAAGAAAAGTTAGTAGATATTTTTATG
27464121 A
1 A
27464122 TTCATCCATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.35
Consensus pattern (34 bp):
AGACCATTAAGAAAAGTTAGTAGATATTTTTATG
Found at i:27485331 original size:30 final size:31
Alignment explanation
Indices: 27485296--27485353 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
27485286 TTTATGAGCC
27485296 TAGGGGC-AAATATGTAATTTTG-ACAAAGTT
1 TAGGGGCAAAAT-TGTAATTTTGCACAAAGTT
*
27485326 TAGGGGTAAAATTGTAATTTTGCACAAA
1 TAGGGGCAAAATTGTAATTTTGCACAAA
27485354 TATGATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (31 bp):
TAGGGGCAAAATTGTAATTTTGCACAAAGTT
Done.