Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 93 of 373
Found at i:29851952 original size:27 final size:27
Alignment explanation
Indices: 29851922--29852099 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
29851912 ATATTGAGTC
* * *
29851922 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
29851949 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
29851976 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
29852004 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
29852031 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
29852058 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
29852085 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29852100 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:29852061 original size:82 final size:81
Alignment explanation
Indices: 29851943--29852098 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
29851933 TGCTATATAA
* *
29851943 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
29852008 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
29852025 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
29852089 CACTTAGTGC
65 CACTTAGTGC
29852099 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:29856385 original size:48 final size:48
Alignment explanation
Indices: 29856314--29856525 Score: 262
Period size: 48 Copynumber: 4.4 Consensus size: 48
29856304 ATATGAATGT
*
29856314 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
* * * ** *
29856362 CAGTGTAAGACCATGTTTAGGACATGGCATCGACCACCTTATAAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
**
29856410 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACCTTATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
* * * * * * *
29856458 CAGTGCAAGACCATGTCTGGGACATGGCATCAGCAATAAGATGAAAAC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
* *
29856506 TAGTGTAAGACCATGCCTGG
1 CAGTGTAAGACCATGTCTGG
29856526 TGTAACGCCC
Statistics
Matches: 141, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 141 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
Found at i:29856481 original size:96 final size:96
Alignment explanation
Indices: 29856314--29856488 Score: 296
Period size: 96 Copynumber: 1.8 Consensus size: 96
29856304 ATATGAATGT
* *
29856314 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGCAAGACCATGTC
29856379 TAGGACATGGCATCGACCACCTTATAAGAGC
66 TAGGACATGGCATCGACCACCTTATAAGAGC
***
29856410 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGCAAGACCATGTC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGCAAGACCATGTC
*
29856475 TGGGACATGGCATC
66 TAGGACATGGCATC
29856489 AGCAATAAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.20
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGCAAGACCATGTC
TAGGACATGGCATCGACCACCTTATAAGAGC
Found at i:29866599 original size:46 final size:43
Alignment explanation
Indices: 29866472--29866600 Score: 118
Period size: 46 Copynumber: 2.8 Consensus size: 43
29866462 GTGTTGATAC
* **
29866472 CATGTCCCAAACATGGTCTTACACTGACAC-CTCTCGTAGCGGATG
1 CATGTCCCAAACAT-GTCTTACACTG-CACTCTCTC-AAGCCAATG
* *
29866517 CATGTCCCAGACATGTCTTACACTGGCTTAC-GTCTCAAGGCCAATG
1 CATGTCCCAAACATGTCTTACACT-GC--ACTCTCTCAA-GCCAATG
29866563 CATGTCCCAAACATGTCTTACACTAGCACTCATCTCAA
1 CATGTCCCAAACATGTCTTACACT-GCACTC-TCTCAA
29866601 TACCGATACC
Statistics
Matches: 70, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
44 13 0.19
45 15 0.21
46 42 0.60
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (43 bp):
CATGTCCCAAACATGTCTTACACTGCACTCTCTCAAGCCAATG
Found at i:29871868 original size:52 final size:52
Alignment explanation
Indices: 29871822--29871928 Score: 169
Period size: 52 Copynumber: 2.1 Consensus size: 52
29871812 TTCTCTTAGT
*
29871822 TCTAGGATGCCAAAAAATACTCGAATATCTTCATTAAGACCATTCTCAAACC
1 TCTAGGATGCCAAAAAATACTCAAATATCTTCATTAAGACCATTCTCAAACC
** * *
29871874 TCTAGGATGCCAACGAATACTCAAATATCTTCATTAAGACCATCCTCGAACC
1 TCTAGGATGCCAAAAAATACTCAAATATCTTCATTAAGACCATTCTCAAACC
29871926 TCT
1 TCT
29871929 TACACATAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.27
Consensus pattern (52 bp):
TCTAGGATGCCAAAAAATACTCAAATATCTTCATTAAGACCATTCTCAAACC
Found at i:29873011 original size:22 final size:22
Alignment explanation
Indices: 29872960--29873023 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
29872950 TACTAAATAC
* *
29872960 AGGGGC-ACACGCTCGCGTGAG
1 AGGGGCAACACGCCCGTGTGAG
* * *
29872981 AAGGACAACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGAG
*
29873003 AGGGGCAACATGCCCGTGTGA
1 AGGGGCAACACGCCCGTGTGA
29873024 CTAATTCGGC
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
21 4 0.12
22 29 0.88
ACGTcount: A:0.23, C:0.27, G:0.39, T:0.11
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGAG
Found at i:29874329 original size:46 final size:45
Alignment explanation
Indices: 29874272--29874437 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 45
29874262 CTCATAGCCA
* *
29874272 ATGCATATCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGTCG
* * * * * *
29874318 ATGCATGTCCCAGACATGTTTTTCACTAGCACTCATCTCAATGT-G
1 ATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGTCG
* * * *
29874363 ATGTCGTGTCCCAGGCATGGTCTTACACTGGCTCTCATAAT-GTGGTCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGTCG
*
29874411 ATGCATGTCCCAGACATGCCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
29874438 AGCTCACAAT
Statistics
Matches: 93, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
45 4 0.04
46 55 0.59
47 29 0.31
48 5 0.05
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGTCG
Found at i:29877453 original size:48 final size:48
Alignment explanation
Indices: 29877369--29877540 Score: 236
Period size: 48 Copynumber: 3.6 Consensus size: 48
29877359 GACATTTGGG
* *
29877369 TGATATGAGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
29877417 TGATGTGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
29877465 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
29877513 CGACATGTGAGCCAGTGTAAGACCATGT
1 TGATATGTGTGCCAGTGTAAGACCATGT
29877541 TTGGAACACG
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (48 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:29878588 original size:21 final size:21
Alignment explanation
Indices: 29878564--29878604 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
29878554 GAAGACATAC
*
29878564 GGGCATGTCGCCTTTCCACAG
1 GGGCATGTCGCCCTTCCACAG
*
29878585 GGGCGTGTCGCCCTTCCACA
1 GGGCATGTCGCCCTTCCACA
29878605 CCTGCGTGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.37, G:0.29, T:0.22
Consensus pattern (21 bp):
GGGCATGTCGCCCTTCCACAG
Found at i:29878611 original size:21 final size:21
Alignment explanation
Indices: 29878569--29878613 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
29878559 CATACGGGCA
* **
29878569 TGTCGCCTTTCCACAGGGGCG
1 TGTCGCCCTTCCACACCGGCG
*
29878590 TGTCGCCCTTCCACACCTGCG
1 TGTCGCCCTTCCACACCGGCG
29878611 TGT
1 TGT
29878614 GTCCCTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.38, G:0.27, T:0.27
Consensus pattern (21 bp):
TGTCGCCCTTCCACACCGGCG
Found at i:29880657 original size:42 final size:40
Alignment explanation
Indices: 29880598--29880688 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 40
29880588 AAATCAAAAG
* * *
29880598 TATTGAAACCTTTAACAAATTAACAATACCTTCCCCTATTTT
1 TATTGATACATTTAACAAAGTAACAATACCTT-CCCTA-TTT
***
29880640 TATTGATACATTTAACAAAGTATTGATACCTTCCCTATTT
1 TATTGATACATTTAACAAAGTAACAATACCTTCCCTATTT
*
29880680 TATCGATAC
1 TATTGATAC
29880689 CCCTACCTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 11 0.26
41 5 0.12
42 26 0.62
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.40
Consensus pattern (40 bp):
TATTGATACATTTAACAAAGTAACAATACCTTCCCTATTT
Found at i:29885205 original size:15 final size:15
Alignment explanation
Indices: 29885181--29885211 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29885171 AGGCGTGTGT
29885181 CTAGGCCGTGTGAGA
1 CTAGGCCGTGTGAGA
*
29885196 CTAGGTCGTGTGAGA
1 CTAGGCCGTGTGAGA
29885211 C
1 C
29885212 ACATGGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.19, G:0.39, T:0.23
Consensus pattern (15 bp):
CTAGGCCGTGTGAGA
Found at i:29899069 original size:10 final size:9
Alignment explanation
Indices: 29899047--29899131 Score: 63
Period size: 9 Copynumber: 9.6 Consensus size: 9
29899037 TGAATCCTCC
29899047 TATTT-TTT
1 TATTTATTT
29899055 TATTTATTCT
1 TATTTATT-T
*
29899065 TATTT-TTA
1 TATTTATTT
29899073 T-TTTATTT
1 TATTTATTT
29899081 TATTTATTT
1 TATTTATTT
* *
29899090 TATTTCTAT
1 TATTTATTT
29899099 T-TTTATTT
1 TATTTATTT
*
29899107 TCAATTCAATTT
1 T--ATT-TATTT
29899119 TA-TTATTT
1 TATTTATTT
29899127 TATTT
1 TATTT
29899132 TGAAAAACAT
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
7 3 0.05
8 21 0.35
9 22 0.37
10 7 0.12
11 2 0.03
12 5 0.08
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (9 bp):
TATTTATTT
Found at i:29899073 original size:6 final size:6
Alignment explanation
Indices: 29899047--29899107 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
29899037 TGAATCCTCC
* * *
29899047 TATTTT T-TTATT TATTCT TATTTT TA-TTT TATTTT ATTTATTT TATTTC
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT -TAT-TTT TATTTT
29899096 TATTTT TATTTT
1 TATTTT TATTTT
29899108 CAATTCAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
5 7 0.16
6 28 0.64
7 6 0.14
8 3 0.07
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:29899083 original size:26 final size:26
Alignment explanation
Indices: 29899052--29899107 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
29899042 CCTCCTATTT
*
29899052 TTTTATTTATTCTTATTTTTA-TTTTA
1 TTTTATTTATT-TTATTTCTATTTTTA
29899078 TTTTATTTATTTTATTTCTATTTTTA
1 TTTTATTTATTTTATTTCTATTTTTA
29899104 TTTT
1 TTTT
29899108 CAATTCAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTATTTATTTTATTTCTATTTTTA
Found at i:29899100 original size:31 final size:29
Alignment explanation
Indices: 29899047--29899107 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 29
29899037 TGAATCCTCC
29899047 TATTTTTTTATTTATTCTTATTTTTATTT
1 TATTTTTTTATTTATTCTTATTTTTATTT
29899076 TATTTTATTTATTTTATT-TCTATTTTTATTT
1 TATTTT-TTTA-TTTATTCT-TATTTTTATTT
29899107 T
1 T
29899108 CAATTCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 6 0.21
30 5 0.17
31 18 0.62
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (29 bp):
TATTTTTTTATTTATTCTTATTTTTATTT
Found at i:29899131 original size:31 final size:29
Alignment explanation
Indices: 29899052--29899132 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 29
29899042 CCTCCTATTT
**
29899052 TTTTATTTATTCTTATTTTTATTTTATTTTA
1 TTTTA-TTATT-TTATTTTTATTTTATTCAA
*
29899083 TTTATTTTATTTCTATTTTTATTTTCAATTCAA
1 TTT-TATTATTT-TATTTTTATTTT--ATTCAA
29899116 TTTTATTATTTTATTTT
1 TTTTATTATTTTATTTT
29899133 GAAAAACATA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
30 1 0.02
31 26 0.62
32 8 0.19
33 7 0.17
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (29 bp):
TTTTATTATTTTATTTTTATTTTATTCAA
Found at i:29903488 original size:68 final size:68
Alignment explanation
Indices: 29903381--29903532 Score: 181
Period size: 68 Copynumber: 2.3 Consensus size: 68
29903371 CACCTGCAAC
* *
29903381 CACACATGCAACCTAGCTACATC-T-A--TCTCGTAGCTCTCTTGT-CTACAAGGTATACA-CAT
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCTCTCTTGTAC-ACAAGGTATACATC-T
29903440 AGTAT
64 AGTAT
* * *
29903445 CACCCATGCGACCTAGCTACCTCATAATGTCTCGTAGCTCTCTTGTACACATGGTATACATCTCG
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCTCTCTTGTACACAAGGTATACATCTAG
29903510 TAT
66 TAT
* *
29903513 TACACATGTGACCTAGCTAC
1 CACACATGCGACCTAGCTAC
29903533 ATACCATCTG
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
64 20 0.27
65 1 0.01
66 1 0.01
68 50 0.68
69 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (68 bp):
CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCTCTCTTGTACACAAGGTATACATCTAG
TAT
Found at i:29911302 original size:68 final size:65
Alignment explanation
Indices: 29911096--29911317 Score: 218
Period size: 64 Copynumber: 3.4 Consensus size: 65
29911086 CATAATTTTG
* * *
29911096 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * * *
29911159 GCTCTCTTGTTTACTTGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTC
29911223 GTA
63 GTA
29911226 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTC-T-AT-TCT
29911290 CGTA
62 CGTA
* *
29911294 GCACTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
29911318 TCCCGTATTA
Statistics
Matches: 125, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
63 17 0.14
64 28 0.22
65 1 0.01
66 24 0.19
67 27 0.22
68 27 0.22
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:29911339 original size:68 final size:68
Alignment explanation
Indices: 29911194--29911345 Score: 163
Period size: 68 Copynumber: 2.3 Consensus size: 68
29911184 CACCTAGAAC
* * * * *
29911194 CACACATGCAACCTAGCTACATC-T-A--TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAG
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGTCTACATGGTATACACACAG
29911255 TAT
66 TAT
*
29911258 CACCCATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGTAC-ACATGGTATACATC-C
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGT-CTACATGGTATACA-CAC
*
29911321 CGTAT
64 AGTAT
* *
29911326 TACACATGTGACCTAGCTAC
1 CACACATGCGACCTAGCTAC
29911346 ATACCATCTG
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
64 20 0.28
65 1 0.01
66 1 0.01
68 48 0.67
69 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.29
Consensus pattern (68 bp):
CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGTCTACATGGTATACACACAG
TAT
Found at i:29918497 original size:17 final size:17
Alignment explanation
Indices: 29918475--29918556 Score: 82
Period size: 17 Copynumber: 4.9 Consensus size: 17
29918465 CATTGAATCC
29918475 TCTTATTTTTTATTTAT
1 TCTTATTTTTTATTTAT
29918492 TCTTA-TTTTTATTTTAT
1 TCTTATTTTTTA-TTTAT
29918509 T-TTATTTTATT-TTTAT
1 TCTTATTTT-TTATTTAT
* *
29918525 TTTTATTTTTATTTTTAT
1 TCTTATTTTT-TATTTAT
*
29918543 TTTTA-TTTTTATTT
1 TCTTATTTTTTATTT
29918557 TCATTTCTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
16 20 0.34
17 26 0.45
18 12 0.21
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (17 bp):
TCTTATTTTTTATTTAT
Found at i:29918503 original size:6 final size:6
Alignment explanation
Indices: 29918477--29918582 Score: 123
Period size: 6 Copynumber: 18.2 Consensus size: 6
29918467 TTGAATCCTC
* *
29918477 TTATTT TT-TAT TTATTC TTATTT TTA-TT TTA-TT TTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
* *
29918521 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TCATTT CTA-TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
29918568 TTATTATT TTATTT T
1 TTA-T-TT TTATTT T
29918583 GAAAAACATA
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
5 23 0.26
6 58 0.67
7 1 0.01
8 5 0.06
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:29926150 original size:40 final size:40
Alignment explanation
Indices: 29926095--29926246 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
29926085 ATAACCACAA
* * *
29926095 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
29926135 GCACAAATACCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
29926175 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
29926215 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
29926247 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:29934237 original size:40 final size:40
Alignment explanation
Indices: 29934182--29934333 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
29934172 ATAACCACAA
* * * *
29934182 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
29934222 GCACAAATGCCTTCGGGTCTTAGCCCGAATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
29934262 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
29934302 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
29934334 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:29937280 original size:21 final size:21
Alignment explanation
Indices: 29937254--29937306 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
29937244 CCTATAGCAT
*
29937254 GGGCGTGTCCGAGGGTCACAC
1 GGGCGTGTCCCAGGGTCACAC
29937275 GGGCGTGTCCCAGGGTCACAC
1 GGGCGTGTCCCAGGGTCACAC
29937296 GGGCGTGTCCC
1 GGGCGTGTCCC
29937307 TTGGACCACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.11, C:0.32, G:0.42, T:0.15
Consensus pattern (21 bp):
GGGCGTGTCCCAGGGTCACAC
Found at i:29939227 original size:69 final size:70
Alignment explanation
Indices: 29939132--29939275 Score: 263
Period size: 69 Copynumber: 2.1 Consensus size: 70
29939122 TTAAAAAATC
*
29939132 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTT-GTATATTTAATTACTT
1 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
*
29939196 TCTAT
66 CCTAT
29939201 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
1 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
29939266 CCTAT
66 CCTAT
29939271 TTATA
1 TTATA
29939276 GTCTAATAAA
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 48 0.67
70 24 0.33
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (70 bp):
TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
CCTAT
Found at i:29942065 original size:13 final size:13
Alignment explanation
Indices: 29942047--29942071 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29942037 CCAAGCACAC
29942047 GCCCATGTCCCTG
1 GCCCATGTCCCTG
29942060 GCCCATGTCCCT
1 GCCCATGTCCCT
29942072 TACATATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.20, T:0.24
Consensus pattern (13 bp):
GCCCATGTCCCTG
Found at i:29943598 original size:23 final size:24
Alignment explanation
Indices: 29943568--29943620 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 24
29943558 ATTTCATGGA
29943568 TTATCATGCAATGAATATCT-AAT
1 TTATCATGCAATGAATATCTAAAT
29943591 TTATCATGCAATGAATATCTAAAT
1 TTATCATGCAATGAATATCTAAAT
29943615 TT-TCAT
1 TTATCAT
29943621 ACACTCAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 24 0.83
24 5 0.17
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.42
Consensus pattern (24 bp):
TTATCATGCAATGAATATCTAAAT
Found at i:29958782 original size:46 final size:44
Alignment explanation
Indices: 29958692--29958856 Score: 161
Period size: 46 Copynumber: 3.6 Consensus size: 44
29958682 GTCAATGCCG
* * * * * *
29958692 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGTGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGGCTCGTCTAA--ATGCCGATGCA
*
29958738 TGTCCCAGACATGTCTTACACTGGCTC-TCATAATATGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGGCTCGTC-TAA-AT-GCCGATGCA
* *
29958784 TGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACT-G-GCTCGTCTAAATGCCGATG-CA
29958831 TGTCCCAGACATGGTCTTACACTGGC
1 TGTCCCAGACAT-GTCTTACACTGGC
29958857 ACACAAATCT
Statistics
Matches: 101, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.02
46 64 0.63
47 18 0.18
48 15 0.15
49 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTGGCTCGTCTAAATGCCGATGCA
Found at i:29961504 original size:46 final size:46
Alignment explanation
Indices: 29961437--29961610 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 46
29961427 GTAAAACGCC
29961437 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
* *
29961483 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACA-T
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCATT
* * * * ** * ** * *
29961532 C-TCA-CGAACTCGGACTCAACTGAACAATTTTGAACATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
*
29961576 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
29961611 ATGCTCAACC
Statistics
Matches: 99, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.59
47 22 0.22
48 3 0.03
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATT
Found at i:29961551 original size:93 final size:93
Alignment explanation
Indices: 29961444--29961614 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
29961434 GCCCATAAGT
* ** * *
29961444 GAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATTCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
29961509 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* ** *
29961537 GAACTCGGACTCAACTGAACAATTTTGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
29961602 CGAGTTCGGATGC
66 CGAGCTCGGATGC
29961615 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:29969356 original size:46 final size:48
Alignment explanation
Indices: 29969289--29969385 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 48
29969279 ACAGGATAGA
* * *
29969289 AATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGAGACAGG
1 AATGAGCCAGGTAAGTCCATATCATATATATATGGCATTGGAGACAGG
*
29969335 AATGAGCCAGGTAAGTCCATATTATATATATATGGCATTGGAGACAGG
1 AATGAGCCAGGTAAGTCCATATCATATATATATGGCATTGGAGACAGG
29969383 AAT
1 AAT
29969386 AATTCATGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 22 0.49
47 1 0.02
48 22 0.49
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (48 bp):
AATGAGCCAGGTAAGTCCATATCATATATATATGGCATTGGAGACAGG
Found at i:29977815 original size:17 final size:17
Alignment explanation
Indices: 29977793--29977837 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
29977783 ATGAGCTGTG
29977793 TGGGCCCTACAGGCTCA
1 TGGGCCCTACAGGCTCA
* *
29977810 TGGGCCCTACGGGCTCG
1 TGGGCCCTACAGGCTCA
29977827 TGGGCCCTACA
1 TGGGCCCTACA
29977838 CAGGTAAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.13, C:0.36, G:0.33, T:0.18
Consensus pattern (17 bp):
TGGGCCCTACAGGCTCA
Found at i:29978421 original size:34 final size:33
Alignment explanation
Indices: 29978374--29978443 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 33
29978364 ATTTGCATCT
29978374 CTGATACTATACTG-AATTGGGCTAAGGCCCACA
1 CTGATACTATACTGTAA-TGGGCTAAGGCCCACA
*
29978407 CTGATTCTAGTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTA-TACTGTAATGGGCTAAGGCCCACA
29978441 CTG
1 CTG
29978444 TTGTTGCCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 8 0.24
34 24 0.71
35 2 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (33 bp):
CTGATACTATACTGTAATGGGCTAAGGCCCACA
Found at i:29982753 original size:53 final size:54
Alignment explanation
Indices: 29982685--29983101 Score: 345
Period size: 53 Copynumber: 7.9 Consensus size: 54
29982675 TTTCCTTTTT
* * * **
29982685 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
29982738 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-A
* * *
29982793 TAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
29982846 GAACTCACCAATGCGATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCTTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTATA
** * * * *
29982900 GTAACTCGTCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * ** *
29982955 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * ** * * *
29983009 -AAAT-TCC-ATG---TTCC-AAACATGGTCTTACATGGTATTCTTGTCTTACA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * *
29983056 GAACTTATCAATGCCATGCCTTGGCATGGTCTTTCATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
29983102 ATCTTACCAA
Statistics
Matches: 290, Mismatches: 57, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
47 27 0.09
48 6 0.02
49 1 0.00
50 3 0.01
51 3 0.01
52 5 0.02
53 89 0.31
54 68 0.23
55 84 0.29
56 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:29982810 original size:55 final size:53
Alignment explanation
Indices: 29982696--29982992 Score: 310
Period size: 55 Copynumber: 5.5 Consensus size: 53
29982686 AACTTACCAT
* * ** * *
29982696 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTGCCTTATAGAACTCATCAA
* *
29982749 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAATAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGGACC-TTGCCTTAT-AGAACTCATCAA
* * * *
29982804 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTGCCTTATAGAACTCATCAA
* * * *
29982857 TGCGATGCCTTGGCATGGTCTTACATAGGACCTTTGCTTTATAGTAACTCGTCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGGACC-TTGCCTTATAG-AACTCATCAA
* * *** * *
29982912 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATG-GGACCTTGCCTTATAGAACTCATCAA
29982966 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGGCATGGTCTTACATG
29982993 ATATCCTTAT
Statistics
Matches: 201, Mismatches: 35, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.02
53 75 0.37
54 34 0.17
55 84 0.42
56 4 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTGCCTTATAGAACTCATCAA
Found at i:29982888 original size:108 final size:108
Alignment explanation
Indices: 29982696--29982991 Score: 466
Period size: 108 Copynumber: 2.7 Consensus size: 108
29982686 AACTTACCAT
**
29982696 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* *
29982761 GCATGGTCTTACATGGGACCTTTTCCTTATAATAACTCATCAA
66 GCATGGTCTTACATAGGACCTTTGCCTTATAATAACTCATCAA
*
29982804 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCGATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* * *
29982869 GCATGGTCTTACATAGGACCTTTGCTTTATAGTAACTCGTCAA
66 GCATGGTCTTACATAGGACCTTTGCCTTATAATAACTCATCAA
* * * * *
29982912 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
29982977 GGCATGGTCTTACAT
65 GGCATGGTCTTACAT
29982992 GATATCCTTA
Statistics
Matches: 173, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 139 0.80
109 34 0.20
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATAGGACCTTTGCCTTATAATAACTCATCAA
Found at i:29983032 original size:47 final size:47
Alignment explanation
Indices: 29982979--29983154 Score: 163
Period size: 47 Copynumber: 3.6 Consensus size: 47
29982969 CATGCCTTGG
29982979 CATGGTCTTACATGATATCCTTATCTTACAAAATTCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACAAAATTCCATGTTCCAAA
* * * * * * ***
29983026 CATGGTCTTACATGGTATTCTTGTCTTACAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTATCTTACA-AA-AT-TCCATG---TTCC-AAA
* * *
29983080 CATGGTCTTTCATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACAAAATTCCATGTTCCAAA
* *
29983127 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
29983155 GTGCCAATGT
Statistics
Matches: 98, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
47 52 0.53
48 5 0.05
49 1 0.01
50 5 0.05
51 4 0.04
52 1 0.01
53 5 0.05
54 25 0.26
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACAAAATTCCATGTTCCAAA
Found at i:29983099 original size:101 final size:101
Alignment explanation
Indices: 29982924--29983154 Score: 376
Period size: 101 Copynumber: 2.3 Consensus size: 101
29982914 CCATGTCTTG
* *
29982924 ACATGGTCTTACATGAT-TTCCTT-TCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCT
1 ACATGGTCTTACATGGTATT-CTTGT-CTTACAGAACTTATCAATGCCATGCCTTGGCATGGTCT
*
29982987 TACATGATATCCTTATCTTACAAAATTCCATGTTCCAA
64 TACATGATATCCTTATCTTACAAAATGCCATGTTCCAA
*
29983025 ACATGGTCTTACATGGTATTCTTGTCTTACAGAACTTATCAATGCCATGCCTTGGCATGGTCTTT
1 ACATGGTCTTACATGGTATTCTTGTCTTACAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
29983090 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACAAAATGCCATGTTCCAA
*
29983126 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATTCTTGTCTTA
29983155 GTGCCAATGT
Statistics
Matches: 122, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
101 119 0.98
102 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATTCTTGTCTTACAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACAAAATGCCATGTTCCAA
Found at i:29984989 original size:66 final size:66
Alignment explanation
Indices: 29984814--29985008 Score: 148
Period size: 66 Copynumber: 3.0 Consensus size: 66
29984804 GCCCGTGCCT
* * * * * * *
29984814 CAGGCCGTGTGGAAAC-AG-GGCATACATACTAACTTGTATCACATGGCCGAG-GACACGCCCGT
1 CAGGCCGTGTGAAAACTAGAGG-AT--ATACTGACTTGTACCACACGGCCAAGTCACACGCCCAT
*
29984876 GTGC
63 GTAC
* * *
29984880 CAGGCCGTGTGAAAACTAGAGGATATACTGACTTAG-GCAACACGGCCAAGTTACACGCCCATGT
1 CAGGCCGTGTGAAAACTAGAGGATATACTGACTT-GTACCACACGGCCAAGTCACACGCCCATGT
29984944 AC
65 AC
* ** * * * * *
29984946 TAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGACCAA-TCACACGCCTATGT
1 CAGGCCGTGTGAAAACTAGAGGATATACTGACTTGTACCACACGGCCAAGTCACACGCCCATGT
29985009 GTGAGATCGT
Statistics
Matches: 103, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
65 31 0.30
66 66 0.64
67 4 0.04
68 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.20
Consensus pattern (66 bp):
CAGGCCGTGTGAAAACTAGAGGATATACTGACTTGTACCACACGGCCAAGTCACACGCCCATGTA
C
Found at i:29985930 original size:28 final size:27
Alignment explanation
Indices: 29985890--29985969 Score: 108
Period size: 26 Copynumber: 2.9 Consensus size: 27
29985880 ATGCTGTTCA
*
29985890 ATACTCAATATCTCGCACACTAAGTGCC
1 ATACTCGATATCTC-CACACTAAGTGCC
29985918 ATACTCGATATCT-CACACTAAGTGCC
1 ATACTCGATATCTCCACACTAAGTGCC
* *
29985944 ACACTTGATATCTCACACACTAAGTG
1 ATACTCGATATCTC-CACACTAAGTG
29985970 TCGTACATAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
26 24 0.51
28 23 0.49
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.26
Consensus pattern (27 bp):
ATACTCGATATCTCCACACTAAGTGCC
Found at i:29986026 original size:40 final size:40
Alignment explanation
Indices: 29985959--29986063 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
29985949 TGATATCTCA
* * * *
29985959 CACACTAAGTGTCGTACATAGCTGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATCG
* * * * *
29985999 CACACTAAGTGCCATATATAACCGAAGCTATGTCTAATTG
1 CACACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATCG
29986039 CACACTAAGTGCCATAAATAGCCGA
1 CACACTAAGTGCCATAAATAGCCGA
29986064 TTTCTCTTCG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATAAATAGCCGAAGCTATCTCAAATCG
Found at i:29987449 original size:37 final size:37
Alignment explanation
Indices: 29987398--29987472 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
29987388 GTACCGTCAT
* *
29987398 AACATAGATGCATGAAACACATTATGAATCTTTTCTA
1 AACATAGATACATGAAACACATTATGAATCCTTTCTA
29987435 AACATAGATACATGAAACACATTATGAATCCTTTCTA
1 AACATAGATACATGAAACACATTATGAATCCTTTCTA
29987472 A
1 A
29987473 CTCTGACGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (37 bp):
AACATAGATACATGAAACACATTATGAATCCTTTCTA
Found at i:29989050 original size:29 final size:29
Alignment explanation
Indices: 29989008--29989066 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
29988998 TCATATATTT
29989008 TTGTAGTAGTCGCGACATCGGTATGACAA
1 TTGTAGTAGTCGCGACATCGGTATGACAA
29989037 TTGTAGTAGTCGCGACATCGGTATGACAA
1 TTGTAGTAGTCGCGACATCGGTATGACAA
29989066 T
1 T
29989067 CATTGAGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (29 bp):
TTGTAGTAGTCGCGACATCGGTATGACAA
Found at i:29993677 original size:16 final size:16
Alignment explanation
Indices: 29993656--29993713 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
29993646 GAAGTCGGCT
29993656 ACCAAAAAGACCCAAA
1 ACCAAAAAGACCCAAA
* * **
29993672 ACCAAAAGAGAAAACTATC
1 ACCAAAA-AG--ACCCAAA
29993691 ACCAAAAAGACCCAAA
1 ACCAAAAAGACCCAAA
29993707 ACCAAAA
1 ACCAAAA
29993714 GAGAAAACTA
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
16 17 0.55
17 2 0.06
18 2 0.06
19 10 0.32
ACGTcount: A:0.62, C:0.28, G:0.07, T:0.03
Consensus pattern (16 bp):
ACCAAAAAGACCCAAA
Found at i:29993702 original size:35 final size:35
Alignment explanation
Indices: 29993656--29993726 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
29993646 GAAGTCGGCT
29993656 ACCAAAAAGACCCAAAACCAAAAGAGAAAACTATC
1 ACCAAAAAGACCCAAAACCAAAAGAGAAAACTATC
29993691 ACCAAAAAGACCCAAAACCAAAAGAGAAAACTATC
1 ACCAAAAAGACCCAAAACCAAAAGAGAAAACTATC
29993726 A
1 A
29993727 AAAGAAATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.61, C:0.25, G:0.08, T:0.06
Consensus pattern (35 bp):
ACCAAAAAGACCCAAAACCAAAAGAGAAAACTATC
Found at i:30015135 original size:40 final size:40
Alignment explanation
Indices: 30015080--30015176 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
30015070 TGATACCCGA
* *
30015080 ACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGG
1 ACTAAGATCCGAAGGCAATTGTGCTAGTTACTATAACCGG
* *
30015120 ACTAATATCCGAAGGCAATTGTGCTAGTTATTATAACCGG
1 ACTAAGATCCGAAGGCAATTGTGCTAGTTACTATAACCGG
**
30015160 GTTAAG-TCCCGAAGGCA
1 ACTAAGAT-CCGAAGGCA
30015177 TTCGTGCGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
39 1 0.02
40 48 0.98
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (40 bp):
ACTAAGATCCGAAGGCAATTGTGCTAGTTACTATAACCGG
Found at i:30015191 original size:40 final size:40
Alignment explanation
Indices: 30015147--30015227 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
30015137 ATTGTGCTAG
30015147 TTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGC-GGT
1 TTATTATAACCGGGTTAAGTCCCG-AGGCATTCGTGCTGGT
*
30015187 TTATTATAATCGGGTTAAGTCCCGAGGCATTCGTGCTGGT
1 TTATTATAACCGGGTTAAGTCCCGAGGCATTCGTGCTGGT
30015227 T
1 T
30015228 GTTACATCCG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 12 0.31
40 27 0.69
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (40 bp):
TTATTATAACCGGGTTAAGTCCCGAGGCATTCGTGCTGGT
Found at i:30025745 original size:27 final size:27
Alignment explanation
Indices: 30025653--30025748 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
30025643 CCCTCAATCA
* * * **
30025653 GTAAAATGACTATTTTGACTTTATGCG
1 GTAAAATGACTGTTTTGCCCTTATATG
* *
30025680 GTAAAATGACTATTTTGCCCTTATGTG
1 GTAAAATGACTGTTTTGCCCTTATATG
*
30025707 GTAAAATGACTGTTTTGCCCTTTTATG
1 GTAAAATGACTGTTTTGCCCTTATATG
*
30025734 GTAAGATGACTGTTT
1 GTAAAATGACTGTTT
30025749 CACACCTATG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (27 bp):
GTAAAATGACTGTTTTGCCCTTATATG
Found at i:30026097 original size:18 final size:18
Alignment explanation
Indices: 30026070--30026123 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
30026060 AGGACTTGCA
30026070 TACTGTTTACTGTTACTG
1 TACTGTTTACTGTTACTG
* *
30026088 TACTGCTTACTATTACTG
1 TACTGTTTACTGTTACTG
* *
30026106 CACTGTTTATTGTTACTG
1 TACTGTTTACTGTTACTG
30026124 GAATGGGCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (18 bp):
TACTGTTTACTGTTACTG
Found at i:30028730 original size:323 final size:323
Alignment explanation
Indices: 30028141--30028786 Score: 1105
Period size: 323 Copynumber: 2.0 Consensus size: 323
30028131 GAATTAGAGC
* *
30028141 ATAAAGCTCACTGGGCTTTGAAACAATTGAATTTGAATCTTAAGAAAGTCGGTGAGAGAAAGATG
1 ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGAAAGCCGGTGAGAGAAAGATG
* * * *
30028206 CTCCAACTTGATGAGTTGGAAGAGATAATGTTATTTTCACACGAGAATTCCAAGATGTGTAAAGA
66 CT-CAACTTGATGAGTTGGAAGAGATAATGTTATTTGCACACAAGAATGCCAACATGTGTAAAGA
* *
30028271 AAAATCTAAGAGGTGGCATGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
130 AAAATATAAGAGGTGGCACGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
*
30028336 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGGACCTTAT
195 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGAACCTTAT
30028401 ACCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTTA
260 ACCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTTA
* *
30028465 ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGTAAGCCGGTGAGAGAAGGATG
1 ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGAAAGCCGGTGAGAGAAAGATG
* * *
30028530 CT-AAGCTTGATGAGTTGGAAGAGTTGATGTTATTTGCATACAAGAATGCCAACATGTGTAAAGA
66 CTCAA-CTTGATGAGTTGGAAGAGATAATGTTATTTGCACACAAGAATGCCAACATGTGTAAAGA
* *
30028594 AAAATATAAGAGGTGGCGCGATAGTTATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
130 AAAATATAAGAGGTGGCACGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
*
30028659 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAGGAAAGCTCAAATCTTGATGGAAAGAACCTTAT
195 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGAACCTTAT
*
30028724 ACCATCTATAAAGTTTATCCATATGGAGCTGTAGAATTGTACGACAACCATGGATGTACGTTT
260 ACCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTT
30028787 CAACTTAATG
Statistics
Matches: 303, Mismatches: 18, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
322 2 0.01
323 238 0.79
324 63 0.21
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (323 bp):
ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGAAAGCCGGTGAGAGAAAGATG
CTCAACTTGATGAGTTGGAAGAGATAATGTTATTTGCACACAAGAATGCCAACATGTGTAAAGAA
AAATATAAGAGGTGGCACGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGTT
GTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGAACCTTATA
CCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTTA
Found at i:30030501 original size:12 final size:12
Alignment explanation
Indices: 30030484--30030509 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30030474 CCATACACGC
30030484 CCGTGTGCTAGG
1 CCGTGTGCTAGG
30030496 CCGTGTGCTAGG
1 CCGTGTGCTAGG
30030508 CC
1 CC
30030510 ATGCCGAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:30031979 original size:18 final size:19
Alignment explanation
Indices: 30031953--30031989 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
30031943 AGTTGTAAAT
30031953 CAAAATAAAAA-AAAATCC
1 CAAAATAAAAATAAAATCC
*
30031971 CAAATTAAAAATAAAATCC
1 CAAAATAAAAATAAAATCC
30031990 AAAGAGGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (19 bp):
CAAAATAAAAATAAAATCC
Found at i:30031991 original size:18 final size:17
Alignment explanation
Indices: 30031949--30031992 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
30031939 TAGTAGTTGT
30031949 AAAT-CAAAATAAAAAA
1 AAATCCAAAATAAAAAA
*
30031965 AAATCCCAAATTAAAAATA
1 AAAT-CCAAAATAAAAA-A
30031984 AAATCCAAA
1 AAATCCAAA
30031993 GAGGCCTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 4 0.17
18 15 0.62
19 5 0.21
ACGTcount: A:0.70, C:0.14, G:0.00, T:0.16
Consensus pattern (17 bp):
AAATCCAAAATAAAAAA
Found at i:30035404 original size:39 final size:40
Alignment explanation
Indices: 30035359--30035530 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
30035349 GCTCCTCGTT
* * *
30035359 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
30035399 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30035438 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30035478 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30035518 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30035531 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30035459 original size:40 final size:39
Alignment explanation
Indices: 30035361--30035583 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
30035351 TCCTCGTTCA
* * * *
30035361 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
30035400 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
30035439 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
30035479 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
30035519 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
30035560 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30035584 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:30035543 original size:80 final size:79
Alignment explanation
Indices: 30035359--30035583 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
30035349 GCTCCTCGTT
* * * * *
30035359 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30035423 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
30035438 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
30035503 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
30035518 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30035582 GA
63 GA
30035584 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:30035592 original size:41 final size:41
Alignment explanation
Indices: 30035515--30035592 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30035505 TTTGTATCTC
* * *
30035515 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30035556 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30035593 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30042360 original size:39 final size:40
Alignment explanation
Indices: 30042315--30042486 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
30042305 GCTCCTCGTT
** * *
30042315 CAAATGCCTTCGGGACATAGGCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
30042355 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30042394 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30042434 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30042474 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30042487 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 80 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30042415 original size:40 final size:39
Alignment explanation
Indices: 30042317--30042539 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
30042307 TCCTCGTTCA
* ** * *
30042317 AATGCCTTCGGGACATAGGCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
30042356 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
30042395 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
30042435 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
30042475 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
30042516 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30042540 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:30042499 original size:80 final size:79
Alignment explanation
Indices: 30042315--30042539 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
30042305 GCTCCTCGTT
* * * * * *
30042315 CAAATGCCTTCGGGACATAGGCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30042379 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
30042394 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
30042459 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
30042474 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30042538 GA
63 GA
30042540 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.31
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:30042548 original size:41 final size:41
Alignment explanation
Indices: 30042471--30042548 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30042461 TTTGTATCTC
* * *
30042471 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30042512 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30042549 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30046811 original size:50 final size:49
Alignment explanation
Indices: 30046693--30046822 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 49
30046683 TTGGTACGCA
* * **
30046693 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
30046742 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
30046792 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
30046823 TCGCAGTTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
49 29 0.39
50 41 0.55
51 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:30046866 original size:101 final size:99
Alignment explanation
Indices: 30046693--30046879 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
30046683 TTGGTACGCA
* * *
30046693 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
30046758 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
30046792 TAGTAGCCTGCACTTAGTACTACACACGTGATC-GCAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
30046856 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
30046880 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.39
101 43 0.57
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:30049121 original size:30 final size:30
Alignment explanation
Indices: 30049087--30049147 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
30049077 TCCTTAACTC
30049087 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
30049117 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
30049147 A
1 A
30049148 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:30050747 original size:44 final size:44
Alignment explanation
Indices: 30050642--30050954 Score: 254
Period size: 44 Copynumber: 6.7 Consensus size: 44
30050632 GATATATTGT
* * * *
30050642 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGTGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGG--CACATCTCT-T-AGC
* * *
30050692 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTAGC
* * *
30050736 CGATGCGTGTCCCAGACACGTCTTACACTGGCTATC-TCTGTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-A-CATCTCTT-A-GC
*
30050783 CGATGCATGTCCCAGACATGTCTTACGCTGGCACTCATCTCTGT-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA--CATCTCT-TAGC
* *
30050829 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATTTATACGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACATC-TCT-TA-GC
* * * *
30050877 GCTGATGCATGTCCCAGACATGCCTTACACTAGCACAACTCTTAAC
1 -C-GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTAGC
* *
30050923 CGATGCGTGTCCAAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
30050955 GCACAAATCA
Statistics
Matches: 217, Mismatches: 31, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
44 57 0.26
45 9 0.04
46 20 0.09
47 49 0.23
48 43 0.20
49 31 0.14
50 8 0.04
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTAGC
Found at i:30052969 original size:40 final size:40
Alignment explanation
Indices: 30052810--30052972 Score: 199
Period size: 40 Copynumber: 4.1 Consensus size: 40
30052800 ACCCAAGTAT
* * *
30052810 CTTCGGGAT-TTAG-CCAGATATAACAACTCACACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
30052849 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
30052889 CTT-GGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
30052928 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
30052968 CTTCG
1 CTTCG
30052973 AATCTTAGTC
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 45 0.42
40 60 0.57
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:30072409 original size:29 final size:31
Alignment explanation
Indices: 30072360--30072421 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
30072350 AATGTGTATC
* *
30072360 TATTTATTTGATGGATGAAAT-T-GAGATAT
1 TATTTATTTAATAGATGAAATGTGGAGATAT
30072389 TATTTATTGTAATAGAT-AAATGTGGAGATAT
1 TATTTATT-TAATAGATGAAATGTGGAGATAT
30072420 TA
1 TA
30072422 AATTTAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.43
30 7 0.25
31 9 0.32
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAT
Found at i:30072794 original size:33 final size:33
Alignment explanation
Indices: 30072755--30072820 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
30072745 TTATGTTAGC
30072755 TCATTGATTGATGCTTTAAATGTTAATTATGTT
1 TCATTGATTGATGCTTTAAATGTTAATTATGTT
30072788 TCATTGATTGATGCTTTAAATGTTAATTATGTT
1 TCATTGATTGATGCTTTAAATGTTAATTATGTT
30072821 ATCCATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (33 bp):
TCATTGATTGATGCTTTAAATGTTAATTATGTT
Found at i:30074551 original size:29 final size:28
Alignment explanation
Indices: 30074504--30074631 Score: 148
Period size: 28 Copynumber: 4.5 Consensus size: 28
30074494 CATGAGATTG
* * **
30074504 GCACTAAATGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTATATA
* *
30074533 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* *
30074561 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTAATTATAT-A
*
30074590 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
30074618 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
30074632 GACTTACTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 45 0.51
29 43 0.49
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:30074568 original size:28 final size:28
Alignment explanation
Indices: 30074530--30074631 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
30074520 TTTAAATTGC
*
30074530 ATAGCACTAAGTGTGCAAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
30074558 ATAGCACTAAGTGTGCGAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
*
30074586 GTAAGCACTAAGTGTGCGAGTTTGATTAT
1 AT-AGCACTAAGTGTGCGAGTTTGATTAT
*
30074615 ATAACACTAAGTGTGCG
1 ATAGCACTAAGTGTGCG
30074632 GACTTACTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 42 0.61
29 27 0.39
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
ATAGCACTAAGTGTGCGAGTTTGATTAT
Found at i:30079131 original size:50 final size:50
Alignment explanation
Indices: 30078963--30079304 Score: 362
Period size: 50 Copynumber: 6.8 Consensus size: 50
30078953 TGAGAACACA
* * * * *
30078963 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG--TTAGGTCACG
* *** * * * * * *
30079015 TGTGTAGTACTAAGTGCAGGCTGCTATACGTACCCGAAAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-ATAGTTAGGTCACG
** * *
30079066 TGTGTAGTACTAAGTGTTGGCTACTACTTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * *
30079116 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
*
30079166 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * * *
30079216 TGTGTAGTACTAAATGCAGGCTACTACATGTATCGGATAGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * *
30079265 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG
30079305 CTTCGGTTAC
Statistics
Matches: 238, Mismatches: 51, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
49 39 0.16
50 134 0.56
51 36 0.15
52 28 0.12
53 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
Found at i:30079205 original size:100 final size:99
Alignment explanation
Indices: 30078961--30079290 Score: 428
Period size: 100 Copynumber: 3.3 Consensus size: 99
30078951 TGTGAGAACA
* * * *
30078961 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACT
* * * * * *
30079026 AAGTGCAGGCTGCTATACGTACCCGAAA-ACTTCGATCA
64 AAGTGCAGGCTACTACATGTA-CC-AAATAGTT-GGTCG
* ** *
30079064 CGTGTGTAGTACTAAGTGTTGGCTACTACTTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
*
30079129 GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCG
66 GTGCAGGCTACTACATGTACCAAATAGTT-GGTCG
30079164 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
* * **
30079229 ATGCAGGCTACTACATGTATCGGATAGTTGGTCG
66 GTGCAGGCTACTACATGTACCAAATAGTTGGTCG
30079263 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
30079291 TGCGTACCAG
Statistics
Matches: 201, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
99 36 0.18
100 93 0.46
101 38 0.19
103 34 0.17
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (99 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
GTGCAGGCTACTACATGTACCAAATAGTTGGTCG
Found at i:30079333 original size:150 final size:150
Alignment explanation
Indices: 30079061--30079336 Score: 358
Period size: 150 Copynumber: 1.8 Consensus size: 150
30079051 AAAACTTCGA
* ** * * *
30079061 TCACGTGTGTAGTACTAAGTGTTGGCTACTACTTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATAGTTAGGTCACATGTGTAGTAC
* * * *
30079126 TAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
66 TAAGTGCAGGCTACTACGCGTACCAAATAGTTAGGTCACAAGTGTAGTAATAAGTGCAGGCTACT
30079191 ACGTGTATCAGATGGTTAGG
131 ACGTGTATCAGATGGTTAGG
* *
30079211 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCGGATAGTT-GGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATAGTTAGGTCACATGTGTAGTAC
* * * * * *
30079275 TAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGGTTACAAG-GATGGTAATATGTGCAGGC
66 TAAGTGCAGGCTACTACGCGTACCAAATAG-TTAGGTCACAAGTG-TAGTAATAAGTGCAGGC
30079337 AACCGTGTAT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
149 43 0.41
150 63 0.59
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (150 bp):
TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTATCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGCGTACCAAATAGTTAGGTCACAAGTGTAGTAATAAGTGCAGGCTACT
ACGTGTATCAGATGGTTAGG
Found at i:30079523 original size:16 final size:15
Alignment explanation
Indices: 30079502--30079531 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
30079492 GAATGGAGCA
30079502 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
30079518 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
30079532 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:30090914 original size:12 final size:12
Alignment explanation
Indices: 30090899--30090923 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30090889 TGGGCGATAC
30090899 CATGGACTTAGG
1 CATGGACTTAGG
30090911 CATGGACTTAGG
1 CATGGACTTAGG
30090923 C
1 C
30090924 CGTTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (12 bp):
CATGGACTTAGG
Found at i:30091260 original size:27 final size:28
Alignment explanation
Indices: 30091198--30091268 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
30091188 ATGTACCTGA
*
30091198 CCCTTATGTGATAGAATGACAATTTTAT
1 CCCTTATGTGATAAAATGACAATTTTAT
*
30091226 -TCTTATGTGATAAAATGACAATTTT-T
1 CCCTTATGTGATAAAATGACAATTTTAT
*
30091252 CCCTAATGTGATAAAAT
1 CCCTTATGTGATAAAAT
30091269 AACCGAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (28 bp):
CCCTTATGTGATAAAATGACAATTTTAT
Found at i:30091293 original size:27 final size:26
Alignment explanation
Indices: 30091263--30091379 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 26
30091253 CCTAATGTGA
*
30091263 TAAAATAACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCT-ATAGGG
*
30091290 TAAAATGACCTAAATATCCCTATAGGG
1 TAAAATGACCGAAATA-CCCTATAGGG
* * * *
30091317 TAGAATGACCAAAATTCCCTTGTAGGG
1 TAAAATGACCGAAATACCC-TATAGGG
* * * *
30091344 TAAAATGACTGTAATACCCTGGTAAGG
1 TAAAATGACCGAAATACCCT-ATAGGG
30091371 TAAAATGAC
1 TAAAATGAC
30091380 AGATTTATTC
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 67 0.89
28 4 0.05
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCTATAGGG
Found at i:30091745 original size:18 final size:18
Alignment explanation
Indices: 30091722--30091779 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
30091712 TCTGCTTGTA
30091722 TACTGCACTGATTACTGT
1 TACTGCACTGATTACTGT
* *
30091740 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
*
30091758 TACTGCACTGATTACTAT
1 TACTGCACTGATTACTGT
30091776 TACT
1 TACT
30091780 AAAGTGGGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:30091809 original size:34 final size:34
Alignment explanation
Indices: 30091770--30091891 Score: 165
Period size: 34 Copynumber: 3.6 Consensus size: 34
30091760 CTGCACTGAT
30091770 TACTATTACT-AAAGTGGGCTAAAGCCCAGACTGC
1 TACTATTACTGAAA-TGGGCTAAAGCCCAGACTGC
*
30091804 TACTATTACTGAAATGGGCTAAAACCCAGACTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* * * *
30091838 TACTGTTACTGAAATGGGCTAAGGCCCATACTTC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* *
30091872 TACTGTTACTGATATGGGCT
1 TACTATTACTGAAATGGGCT
30091892 TAAGATCAGA
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
34 77 0.96
35 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
Found at i:30100510 original size:13 final size:13
Alignment explanation
Indices: 30100492--30100516 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30100482 ATGCTTGTCT
30100492 CATAAAATTAAAA
1 CATAAAATTAAAA
30100505 CATAAAATTAAA
1 CATAAAATTAAA
30100517 TGAATTTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
CATAAAATTAAAA
Found at i:30102200 original size:27 final size:27
Alignment explanation
Indices: 30102143--30102218 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
30102133 GAAGCTTCCT
* * *
30102143 TTTCATGGATAGCTACAAAAGCCTCAT
1 TTTCATAGATAGCCACAAAAGCCTCAA
*
30102170 TTTCATAGATAGCCAC-AAAGACTTCAA
1 TTTCATAGATAGCCACAAAAG-CCTCAA
* *
30102197 TTTCTTAAATCA-CCACAAAAGC
1 TTTCATAGAT-AGCCACAAAAGC
30102219 TTCCTTTTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
26 4 0.10
27 31 0.77
28 5 0.12
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.28
Consensus pattern (27 bp):
TTTCATAGATAGCCACAAAAGCCTCAA
Found at i:30105318 original size:27 final size:27
Alignment explanation
Indices: 30105288--30105448 Score: 89
Period size: 27 Copynumber: 6.0 Consensus size: 27
30105278 CTTCCTTGTT
30105288 ATAGATAGCCACAAAGATTTTCTTTTC
1 ATAGATAGCCACAAAGATTTTCTTTTC
* ** *
30105315 ATAGATATG-CAAAAAGGCTTCCTTTTC
1 ATAGATA-GCCACAAAGATTTTCTTTTC
* * * * *
30105342 ATTGATGGCCATAAAGACTTAT-GTTTC
1 ATAGATAGCCACAAAGA-TTTTCTTTTC
*
30105369 TTAGATCA-CCACAAA-ATATTTCTTTTC
1 ATAGAT-AGCCACAAAGAT-TTTCTTTTC
* *
30105396 ATAGATAGACACAAAGCA-TTTCTTTCC
1 ATAGATAGCCACAAAG-ATTTTCTTTTC
* * * **
30105423 TTAGATCGCTACAAAGGCTTTCTTTT
1 ATAGATAGCCACAAAGATTTTCTTTT
30105449 TCTGGCGTGT
Statistics
Matches: 97, Mismatches: 27, Indels: 20
0.67 0.19 0.14
Matches are distributed among these distances:
25 1 0.01
26 5 0.05
27 88 0.91
28 2 0.02
29 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (27 bp):
ATAGATAGCCACAAAGATTTTCTTTTC
Found at i:30106112 original size:87 final size:87
Alignment explanation
Indices: 30105966--30106140 Score: 350
Period size: 87 Copynumber: 2.0 Consensus size: 87
30105956 TATTCATAGA
30105966 AGCACTCACATGAATAACATACAAGCAAGAGTTATCTCAGAGACTTACTTGAAAACCACGAATAG
1 AGCACTCACATGAATAACATACAAGCAAGAGTTATCTCAGAGACTTACTTGAAAACCACGAATAG
30106031 GAGCTTAAACCTTAGATCTAGC
66 GAGCTTAAACCTTAGATCTAGC
30106053 AGCACTCACATGAATAACATACAAGCAAGAGTTATCTCAGAGACTTACTTGAAAACCACGAATAG
1 AGCACTCACATGAATAACATACAAGCAAGAGTTATCTCAGAGACTTACTTGAAAACCACGAATAG
30106118 GAGCTTAAACCTTAGATCTAGC
66 GAGCTTAAACCTTAGATCTAGC
30106140 A
1 A
30106141 TCCAATCAGG
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (87 bp):
AGCACTCACATGAATAACATACAAGCAAGAGTTATCTCAGAGACTTACTTGAAAACCACGAATAG
GAGCTTAAACCTTAGATCTAGC
Found at i:30107161 original size:104 final size:106
Alignment explanation
Indices: 30107025--30107235 Score: 336
Period size: 104 Copynumber: 2.0 Consensus size: 106
30107015 AAGATAGAAG
* *
30107025 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTTTGATACTAAATGTT-GG-AAAA
1 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGGAAAAA
* * * *
30107088 AATCTACTTTGAAAATGATTTTCTTGCACAATAAAACATAA
66 AATCTAATTTAAAAATAATTTTCTTGCACAATAAAAAATAA
**
30107129 ATTTTGGTCTCGGTTTATGCTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGGAAAAA
1 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGGAAAAA
30107194 AATCTAATTTAAAAATAATTTTCTTGCACAATAAAAAATAA
66 AATCTAATTTAAAAATAATTTTCTTGCACAATAAAAAATAA
30107235 A
1 A
30107236 AATTTTGAAA
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 53 0.55
105 2 0.02
106 42 0.43
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (106 bp):
ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGGAAAAA
AATCTAATTTAAAAATAATTTTCTTGCACAATAAAAAATAA
Found at i:30112191 original size:56 final size:58
Alignment explanation
Indices: 30112055--30112192 Score: 140
Period size: 56 Copynumber: 2.4 Consensus size: 58
30112045 GGCTATCATA
* * * ** * * *
30112055 ACATCTTTCATCTATGGTCTTACACCGTATATCTTATACCATTTACCTTGTTGTCATG
1 ACATCTTTCATCAATGGTCTTACGCCCTATATCTTATACCAAGTACCATGTTGCCAAG
*
30112113 ACGTCTTTCATCAATTGG-CTTACGCCCT-TATCATT-T-CCAAGTACCATGTTGCCAAG
1 ACATCTTTCATCAA-TGGTCTTACGCCCTATATC-TTATACCAAGTACCATGTTGCCAAG
*
30112169 ACATCTTTCATCCATGGTCTTACG
1 ACATCTTTCATCAATGGTCTTACG
30112193 TTATGTACCA
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
55 3 0.05
56 33 0.50
57 5 0.08
58 22 0.33
59 3 0.05
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.38
Consensus pattern (58 bp):
ACATCTTTCATCAATGGTCTTACGCCCTATATCTTATACCAAGTACCATGTTGCCAAG
Found at i:30112230 original size:51 final size:51
Alignment explanation
Indices: 30112170--30112291 Score: 183
Period size: 51 Copynumber: 2.4 Consensus size: 51
30112160 GTTGCCAAGA
*
30112170 CATCTTTCATCCATGGTCTTACGTTATGTACCATATACCAGACTGCAATAG
1 CATCTTTCATCCATGGTCTTACGCTATGTACCATATACCAGACTGCAATAG
* * *
30112221 CATCTTTCATCCATGATCTTACGCTATGTACCATATACTAGACTGCCATAG
1 CATCTTTCATCCATGGTCTTACGCTATGTACCATATACCAGACTGCAATAG
* *
30112272 CCTCTTTCATCTAT-GTCTTA
1 CATCTTTCATCCATGGTCTTA
30112292 TGCCATATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 5 0.08
51 59 0.92
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.36
Consensus pattern (51 bp):
CATCTTTCATCCATGGTCTTACGCTATGTACCATATACCAGACTGCAATAG
Found at i:30115724 original size:46 final size:46
Alignment explanation
Indices: 30115661--30115981 Score: 412
Period size: 46 Copynumber: 7.0 Consensus size: 46
30115651 TTCGACATGA
* * * * * *
30115661 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** *** **
30115707 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCAGGT
* * *
30115754 TGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
30115800 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
30115846 TGCCATGGTATCTTTCAACCATGATCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
30115892 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
30115938 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
30115982 AGAGCACACT
Statistics
Matches: 248, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 3 0.01
46 203 0.82
47 42 0.17
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:30118080 original size:11 final size:11
Alignment explanation
Indices: 30118064--30118115 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
30118054 TATACTAAAT
30118064 AAATAATAATA
1 AAATAATAATA
*
30118075 AAATAAT-ATT
1 AAATAATAATA
* *
30118085 AAATATCTCATA
1 AAATA-ATAATA
*
30118097 AAATATTAATA
1 AAATAATAATA
30118108 AAATAATA
1 AAATAATA
30118116 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:30122109 original size:18 final size:18
Alignment explanation
Indices: 30122082--30122141 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 18
30122072 TTTTTCAAGT
30122082 TTTA-TTTTAGAACTTCA
1 TTTAGTTTTAGAACTTCA
30122099 TTTAGTTTTAG---TT--
1 TTTAGTTTTAGAACTTCA
*
30122112 TTTAGTTTTTTACAACTTCA
1 TTTAG--TTTTAGAACTTCA
30122132 TTTAGTTTTA
1 TTTAGTTTTA
30122142 TTTTTTAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 15
0.68 0.02 0.30
Matches are distributed among these distances:
13 5 0.15
15 7 0.21
17 4 0.12
18 13 0.38
20 5 0.15
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.60
Consensus pattern (18 bp):
TTTAGTTTTAGAACTTCA
Found at i:30122129 original size:33 final size:33
Alignment explanation
Indices: 30122086--30122153 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
30122076 TCAAGTTTTA
*
30122086 TTTTAGAACTTCATTTAGTTTTAGTTTTTAGTT
1 TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
*
30122119 TTTTACAACTTCATTTAGTTTTATTTTTTAGTT
1 TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
30122152 TT
1 TT
30122154 CTTTAGTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.07, G:0.09, T:0.63
Consensus pattern (33 bp):
TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
Found at i:30128065 original size:44 final size:41
Alignment explanation
Indices: 30128013--30128136 Score: 119
Period size: 44 Copynumber: 2.9 Consensus size: 41
30128003 ACCTTTAATG
30128013 ATAATAATATATAGATA-AAAATGTATAATAATATAAAAAATGAC
1 ATAATAATATATA-ATATAAAA-GTAT-AT-ATATAAAAAATGAC
*
30128057 ATAATAATATATAATATAAAAGTATATATGTAAAAAAT-A-
1 ATAATAATATATAATATAAAAGTATATATATAAAAAATGAC
*
30128096 ATATATAATAAATAATAATATAAATATTATATAATATAAAA
1 ATA-ATAAT--AT-ATAATATAAA-AGTATAT-ATATAAAA
30128137 TATAAAAATA
Statistics
Matches: 70, Mismatches: 3, Indels: 13
0.81 0.03 0.15
Matches are distributed among these distances:
39 3 0.04
40 6 0.09
41 10 0.14
42 4 0.06
43 17 0.24
44 23 0.33
45 7 0.10
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (41 bp):
ATAATAATATATAATATAAAAGTATATATATAAAAAATGAC
Found at i:30128091 original size:59 final size:60
Alignment explanation
Indices: 30128019--30128140 Score: 137
Period size: 59 Copynumber: 2.0 Consensus size: 60
30128009 AATGATAATA
*
30128019 ATATATAGATAAAAATGTATAATA-AT-ATAAAAAATGACAT-AATAATATATAATATAAAAGT
1 ATATATAGATAAAAA---ATAATATATAATAAAAAATAACATAAATAATATATAATATAAAA-T
* * *
30128080 ATATAT-G-TAAAAAATAATATATAATAAATAATAATATAAATATTATATAATATAAAAT
1 ATATATAGATAAAAAATAATATATAATAAAAAATAACATAAATAATATATAATATAAAAT
30128138 ATA
1 ATA
30128141 AAAATAAGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
56 6 0.11
57 2 0.04
58 15 0.28
59 24 0.44
60 1 0.02
61 6 0.11
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (60 bp):
ATATATAGATAAAAAATAATATATAATAAAAAATAACATAAATAATATATAATATAAAAT
Found at i:30128099 original size:14 final size:14
Alignment explanation
Indices: 30128037--30128119 Score: 55
Period size: 14 Copynumber: 5.9 Consensus size: 14
30128027 ATAAAAATGT
30128037 ATAATAATATAAAAA
1 ATAAT-ATATAAAAA
* *
30128052 ATGACATA-ATAATAT
1 AT-A-ATATATAAAAA
**
30128067 ATAATATA-AAAGT
1 ATAATATATAAAAA
*
30128080 AT-ATATGTAAAAA
1 ATAATATATAAAAA
*
30128093 ATAATATATAATAA
1 ATAATATATAAAAA
30128107 ATAATAATATAAA
1 ATAAT-ATATAAA
30128120 TATTATATAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
12 4 0.08
13 13 0.25
14 16 0.31
15 15 0.29
16 2 0.04
17 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (14 bp):
ATAATATATAAAAA
Found at i:30128104 original size:40 final size:43
Alignment explanation
Indices: 30128013--30128113 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
30128003 ACCTTTAATG
30128013 ATAATAATATATAGATAAAAATGTATAATAATATAAAAAATGAC
1 ATAATAATATATA-ATAAAAATGTATAATAATATAAAAAATGAC
*
30128057 ATAATAATATATAATATAAAA-GTAT-AT-ATGTAAAAAAT-A-
1 ATAATAATATATAATA-AAAATGTATAATAATATAAAAAATGAC
*
30128096 ATATATAATAAATAATAA
1 ATA-ATAATATATAATAA
30128114 TATAAATATT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
39 4 0.08
40 13 0.25
41 10 0.19
42 2 0.04
43 7 0.13
44 17 0.32
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (43 bp):
ATAATAATATATAATAAAAATGTATAATAATATAAAAAATGAC
Found at i:30128112 original size:17 final size:17
Alignment explanation
Indices: 30128057--30128121 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
30128047 AAAAAATGAC
30128057 ATAATAATATATAAT--
1 ATAATAATATATAATAA
*
30128072 ATAA-AAGTATATATGTAA
1 ATAATAA-TATATA-ATAA
*
30128090 AAAATAATATATAATAA
1 ATAATAATATATAATAA
30128107 ATAATAATATA-AATA
1 ATAATAATATATAATA
30128122 TTATATAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
14 2 0.05
15 10 0.24
16 5 0.12
17 13 0.32
18 9 0.22
19 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
ATAATAATATATAATAA
Found at i:30128127 original size:11 final size:12
Alignment explanation
Indices: 30128037--30128202 Score: 68
Period size: 12 Copynumber: 13.9 Consensus size: 12
30128027 ATAAAAATGT
30128037 ATAATAATATAA
1 ATAATAATATAA
* * *
30128049 AAAATGACAT-A
1 ATAATAATATAA
30128060 ATAAT-ATATAA
1 ATAATAATATAA
*
30128071 TATAA-AAGTATAT
1 -ATAATAA-TATAA
*
30128084 AT-GTAA-A-AA
1 ATAATAATATAA
30128093 ATAATATATAATAA
1 ATAATA-AT-ATAA
30128107 ATAATAATATAA
1 ATAATAATATAA
*
30128119 AT-ATTATATAA
1 ATAATAATATAA
30128130 TATAA-AATATAA
1 -ATAATAATATAA
30128142 A-AATAAGGT-TAA
1 ATAATAA--TATAA
* *
30128154 A-AATAAAACAA
1 ATAATAATATAA
*
30128165 ATAACAATATATA
1 ATAATAATATA-A
30128178 A-AATATATATATA
1 ATAATA-ATATA-A
30128191 ATAATAAATATA
1 ATAAT-AATATA
30128203 TAGGGTTAGA
Statistics
Matches: 116, Mismatches: 17, Indels: 40
0.67 0.10 0.23
Matches are distributed among these distances:
9 3 0.03
10 8 0.07
11 21 0.18
12 48 0.41
13 19 0.16
14 16 0.14
15 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (12 bp):
ATAATAATATAA
Found at i:30128137 original size:43 final size:43
Alignment explanation
Indices: 30128013--30128138 Score: 134
Period size: 43 Copynumber: 2.9 Consensus size: 43
30128003 ACCTTTAATG
30128013 ATAATAATATATAGATA-AAAATGTATAATAATATAAAA-AATGAC
1 ATAATAATATATA-ATATAAAA-GTAT-ATAATATAAAATAATGAC
* * *
30128057 ATAATAATATATAATATAAAAGTATATATGTAAAAAATAAT-AT
1 ATAATAATATATAATATAAAAGTATATA-ATATAAAATAATGAC
*
30128100 ATAATAA-ATAATAATATAAATATTATATAATATAAAATA
1 ATAATAATAT-ATAATATAAA-AGTATATAATATAAAATA
30128139 TAAAAATAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
42 5 0.07
43 39 0.55
44 27 0.38
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (43 bp):
ATAATAATATATAATATAAAAGTATATAATATAAAATAATGAC
Found at i:30128141 original size:7 final size:7
Alignment explanation
Indices: 30128057--30128147 Score: 53
Period size: 7 Copynumber: 12.6 Consensus size: 7
30128047 AAAAAATGAC
30128057 ATAATAAT
1 ATAA-AAT
*
30128065 ATATAAT
1 ATAAAAT
30128072 ATAAAAGT
1 ATAAAA-T
*
30128080 AT-ATAT
1 ATAAAAT
* *
30128086 GTAAAAA
1 ATAAAAT
*
30128093 ATAATAT
1 ATAAAAT
30128100 ATAATAA-
1 ATAA-AAT
30128107 ATAATAAT
1 ATAA-AAT
30128115 ATAAATATT
1 ATAAA-A-T
*
30128124 ATATAAT
1 ATAAAAT
30128131 ATAAAAT
1 ATAAAAT
30128138 ATAAAA-
1 ATAAAAT
30128144 ATAA
1 ATAA
30128148 GGTTAAAAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 14
0.71 0.13 0.15
Matches are distributed among these distances:
6 6 0.09
7 41 0.63
8 13 0.20
9 5 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (7 bp):
ATAAAAT
Found at i:30128509 original size:10 final size:10
Alignment explanation
Indices: 30128494--30128524 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
30128484 GCGGACCCTC
30128494 CGGGTCGGAT
1 CGGGTCGGAT
30128504 CGGGTCGGAT
1 CGGGTCGGAT
30128514 CGGGTCGGAT
1 CGGGTCGGAT
30128524 C
1 C
30128525 CTGGGCCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.10, C:0.23, G:0.48, T:0.19
Consensus pattern (10 bp):
CGGGTCGGAT
Found at i:30131113 original size:9 final size:9
Alignment explanation
Indices: 30131099--30131123 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
30131089 ATCATAGTTG
30131099 AACTCTCTA
1 AACTCTCTA
30131108 AACTCTCTA
1 AACTCTCTA
30131117 AACTCTC
1 AACTCTC
30131124 CTTAGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTCTCTA
Found at i:30131808 original size:48 final size:48
Alignment explanation
Indices: 30131737--30131833 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
30131727 TATAAGTCAG
30131737 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
1 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
30131785 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
1 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
30131833 T
1 T
30131834 CAAACCATAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (48 bp):
TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
Found at i:30144471 original size:18 final size:18
Alignment explanation
Indices: 30144431--30144472 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
30144421 TCTCCTACAC
30144431 TTTTTTATTTTTCAATTT
1 TTTTTTATTTTTCAATTT
*
30144449 ATTTTTATTTTTC-ATTCT
1 TTTTTTATTTTTCAATT-T
30144467 TTTTTT
1 TTTTTT
30144473 CACTTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTATTTTTCAATTT
Found at i:30144472 original size:30 final size:32
Alignment explanation
Indices: 30144438--30144510 Score: 105
Period size: 30 Copynumber: 2.3 Consensus size: 32
30144428 CACTTTTTTA
30144438 TTTTTCAATTTATTTTTATTTTTC-AT-TCTT
1 TTTTTCAATTTATTTTTATTTTTCAATCTCTT
* * *
30144468 TTTTTCACTTTCTTTTTCTTTTTCAATCTCTT
1 TTTTTCAATTTATTTTTATTTTTCAATCTCTT
30144500 TTTTTCAATTT
1 TTTTTCAATTT
30144511 CGTAATCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 21 0.57
31 2 0.05
32 14 0.38
ACGTcount: A:0.14, C:0.15, G:0.00, T:0.71
Consensus pattern (32 bp):
TTTTTCAATTTATTTTTATTTTTCAATCTCTT
Found at i:30144499 original size:18 final size:18
Alignment explanation
Indices: 30144468--30144502 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
30144458 TTTCATTCTT
* *
30144468 TTTTTCACTTTCTTTTTC
1 TTTTTCAATCTCTTTTTC
30144486 TTTTTCAATCTCTTTTT
1 TTTTTCAATCTCTTTTT
30144503 TTCAATTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTCAATCTCTTTTTC
Found at i:30147201 original size:24 final size:22
Alignment explanation
Indices: 30147161--30147215 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
30147151 TGGACACAAA
* *
30147161 AAAAAGCATGATAACAATATCACT
1 AAAAA-CATGAAAACAAAAT-ACT
*
30147185 AAAAACATGAAATACAAAATATT
1 AAAAACATGAAA-ACAAAATACT
30147208 AAAAACAT
1 AAAAACAT
30147216 ACATTAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.62, C:0.13, G:0.05, T:0.20
Consensus pattern (22 bp):
AAAAACATGAAAACAAAATACT
Found at i:30155028 original size:25 final size:24
Alignment explanation
Indices: 30155000--30155090 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 24
30154990 ATGCTCTCGC
30155000 GAGCTGTAAATCGGTAAGCTCATAT
1 GAGCTG-AAATCGGTAAGCTCATAT
30155025 GAGCTGAGAATCGGTAAGCTC-TCAT
1 GAGCTGA-AATCGGTAAGCTCAT-AT
* * * *
30155050 GATCTGCAATCGATAAGCTCATAC
1 GAGCTGAAATCGGTAAGCTCATAT
*
30155074 GAGCTGATAATAGGTAA
1 GAGCTGA-AATCGGTAA
30155091 TCCCTGATAA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
24 20 0.37
25 34 0.63
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (24 bp):
GAGCTGAAATCGGTAAGCTCATAT
Found at i:30155078 original size:49 final size:50
Alignment explanation
Indices: 30154967--30155090 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 50
30154957 GTACATGTAT
* * * *
30154967 GCTCCTACGAGCT-ATGAATCGGTATGCTCTCGCGAGCTGTAAATCGGTAA
1 GCTCATACGAGCTGA-GAATCGGTAAGCTCTCACGAGCTGTAAATCGATAA
* * * *
30155017 GCTCATATGAGCTGAGAATCGGTAAGCTCTCATGATCTG-CAATCGATAA
1 GCTCATACGAGCTGAGAATCGGTAAGCTCTCACGAGCTGTAAATCGATAA
* *
30155066 GCTCATACGAGCTGATAATAGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
30155091 TCCCTGATAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 30 0.48
50 31 0.50
51 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATCGGTAAGCTCTCACGAGCTGTAAATCGATAA
Found at i:30173310 original size:20 final size:19
Alignment explanation
Indices: 30173285--30173332 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
30173275 TGATTTTGAC
30173285 TAATTTTAGAAATTTTCATT
1 TAATTTTA-AAATTTTCATT
** *
30173305 TAATTTTAAGTTTTTCTTT
1 TAATTTTAAAATTTTCATT
30173324 TAATTTTAA
1 TAATTTTAA
30173333 CTTAGTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (19 bp):
TAATTTTAAAATTTTCATT
Found at i:30187855 original size:40 final size:39
Alignment explanation
Indices: 30187781--30187873 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 39
30187771 GCTACTCGTT
*
30187781 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACT-GCA
* *
30187821 CAAATGCCTTCGGGACTTAACCCGGATT-TCGTAACTGCA
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTGCA
*
30187860 CCAATGCCTTCGGG
1 CAAATGCCTTCGGG
30187874 TTAGTATCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
39 16 0.33
40 30 0.62
41 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTGCA
Found at i:30192322 original size:35 final size:35
Alignment explanation
Indices: 30192283--30192413 Score: 120
Period size: 35 Copynumber: 3.6 Consensus size: 35
30192273 CATGGCGAAG
30192283 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
30192318 TGTGAAATGTAGGTATGGTATTATCAAATCAATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** *** * *
30192358 TAAGAAATGTAGGTATTCCAT-TTCCTATACCGAGT
1 TGTGAAATGTAGGTATGGTATCATCC-ATACTGAGT
*
30192393 TGTAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
30192414 TTCAATGAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
34 2 0.03
35 41 0.55
37 2 0.03
38 4 0.05
40 26 0.35
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:30200930 original size:40 final size:39
Alignment explanation
Indices: 30200774--30200935 Score: 218
Period size: 40 Copynumber: 4.1 Consensus size: 39
30200764 GATGATAACG
* *
30200774 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-TCC
*
30200814 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
*
30200854 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATCC
**
30200894 GGGCTAAGTCCCGAAGGCATTTAAGCGAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCC
30200934 GG
1 GG
30200936 TTAAATCCCA
Statistics
Matches: 110, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
39 3 0.03
40 104 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCC
Found at i:30202436 original size:40 final size:37
Alignment explanation
Indices: 30202370--30202504 Score: 163
Period size: 35 Copynumber: 3.7 Consensus size: 37
30202360 CATGGCAAAG
30202370 TGTGAAATGTAGGTATGGTA--TCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
30202405 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATT-TC--ATCCATACTGAGT
** *
30202445 TAAGAAATGTAGGTATGGGATTTC--CCATA-TCGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACT-GAGT
*
30202480 TGTAAAATGTAGGTATGGTATTTCA
1 TGTGAAATGTAGGTATGGTATTTCA
30202505 ATGAGGAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
34 1 0.01
35 49 0.57
38 2 0.02
39 2 0.02
40 32 0.37
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
Found at i:30208913 original size:19 final size:18
Alignment explanation
Indices: 30208867--30208939 Score: 64
Period size: 19 Copynumber: 4.2 Consensus size: 18
30208857 CCTCTCTCAC
*
30208867 TTTATCTATTTTTT--AT
1 TTTATGTATTTTTTGAAT
30208883 TTT-T-TATTTTTTGAACT
1 TTTATGTATTTTTTGAA-T
* *
30208900 TTTATGTGTTTTTTAAATT
1 TTTATGTATTTTTTGAA-T
*
30208919 TTTATTTATTTTTTGAAT
1 TTTATGTATTTTTTGAAT
30208937 TTT
1 TTT
30208940 CAGAAATTCT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
14 8 0.17
15 1 0.02
16 4 0.09
17 4 0.09
18 5 0.11
19 24 0.52
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTATGTATTTTTTGAAT
Found at i:30215443 original size:31 final size:32
Alignment explanation
Indices: 30215403--30215474 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 32
30215393 TTAAACTAAC
*
30215403 ATTTA-ATATATAAAATTACACA-AAATCAAA
1 ATTTATATATATAAAATTACACATAAATAAAA
*
30215433 A-TT-TATATATAATATTACACATTAAATAAAA
1 ATTTATATATATAAAATTACACA-TAAATAAAA
*
30215464 ATTTATTTATA
1 ATTTATATATA
30215475 GTTTTAAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
29 18 0.53
30 1 0.03
31 8 0.24
32 2 0.06
33 5 0.15
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (32 bp):
ATTTATATATATAAAATTACACATAAATAAAA
Found at i:30215449 original size:29 final size:30
Alignment explanation
Indices: 30215403--30215474 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
30215393 TTAAACTAAC
*
30215403 ATTTAATATATAAAATTACACA-AAATCAAA
1 ATTT-ATATATAAAATTACACATAAATAAAA
*
30215433 ATTTATATATAATATTACACATTAAATAAAA
1 ATTTATATATAAAATTACACA-TAAATAAAA
*
30215464 ATTTATTTATA
1 ATTTATATATA
30215475 GTTTTAAACT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.43
30 4 0.11
31 17 0.46
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (30 bp):
ATTTATATATAAAATTACACATAAATAAAA
Found at i:30215807 original size:4 final size:4
Alignment explanation
Indices: 30215798--30215822 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
30215788 GCCACCTCCT
30215798 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
30215823 AAAAGTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:30220165 original size:40 final size:40
Alignment explanation
Indices: 30220107--30220379 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
30220097 TTTGAATTTT
*
30220107 TATCCGGGCTAAGTCCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
30220147 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
30220187 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
30220227 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATA
* * *
30220269 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
30220309 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** * * *
30220349 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGC
30220380 TTGTGGTAAT
Statistics
Matches: 218, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 181 0.83
42 37 0.17
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:30220322 original size:122 final size:120
Alignment explanation
Indices: 30220107--30220379 Score: 420
Period size: 122 Copynumber: 2.3 Consensus size: 120
30220097 TTTGAATTTT
* * *
30220107 TATCCGGGCTAAGTCCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
* * *
30220172 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATA
30220227 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATATATCCGGGCTAAGACCCGAAGGC
*
30220292 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
64 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATA
** * * *
30220349 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGC
30220380 TTGTGGTAAT
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
120 36 0.26
122 103 0.74
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (120 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATA
Done.