Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 98 of 373
Found at i:31775108 original size:19 final size:19
Alignment explanation
Indices: 31775072--31775108 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
31775062 CAGCCCATCA
*
31775072 GGCCCATTTAGCCCATTTC
1 GGCCCATTTAGCCAATTTC
*
31775091 GGCCCATTTGGCCAATTT
1 GGCCCATTTAGCCAATTT
31775109 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTTC
Found at i:31775388 original size:18 final size:18
Alignment explanation
Indices: 31775362--31775397 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
31775352 CAATCGATAT
*
31775362 CACTTAAAGATTAATCTC
1 CACTCAAAGATTAATCTC
31775380 CACTCAAAGATTAATCTC
1 CACTCAAAGATTAATCTC
31775398 ACATACTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (18 bp):
CACTCAAAGATTAATCTC
Found at i:31789022 original size:12 final size:12
Alignment explanation
Indices: 31789005--31789031 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
31788995 TCAGGTTGTT
31789005 ACATGGCCTAGC
1 ACATGGCCTAGC
31789017 ACATGGCCTAGC
1 ACATGGCCTAGC
31789029 ACA
1 ACA
31789032 CAGGTGTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:31791925 original size:20 final size:20
Alignment explanation
Indices: 31791900--31791952 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
31791890 GTCATGGATG
*
31791900 TATATGCTAGAAATTAGAAA
1 TATATGGTAGAAATTAGAAA
31791920 TATATGGTAGAAATTAGAAA
1 TATATGGTAGAAATTAGAAA
31791940 TATATGGTAGAAA
1 TATATGGTAGAAA
31791953 ATGAAAGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.49, C:0.02, G:0.19, T:0.30
Consensus pattern (20 bp):
TATATGGTAGAAATTAGAAA
Found at i:31794395 original size:55 final size:56
Alignment explanation
Indices: 31794330--31794444 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
31794320 AGCATGGCTG
* *
31794330 CCAGATACAGA-AAATGAGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGACAAATGAGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
31794386 CCAGA-ACAGACATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGACAAATGAGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
31794441 CCAG
1 CCAG
31794445 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (56 bp):
CCAGATACAGACAAATGAGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:31794440 original size:28 final size:27
Alignment explanation
Indices: 31794355--31794444 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
31794345 GAGACAGAGT
*
31794355 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* * *
31794384 CACCAGAACAGA-CATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
31794411 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
31794439 CACCAG
1 CACCAG
31794445 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:31794596 original size:28 final size:28
Alignment explanation
Indices: 31794552--31794641 Score: 162
Period size: 28 Copynumber: 3.2 Consensus size: 28
31794542 ATTAACCCTA
* *
31794552 GGGTATAAAGGTCATTTTGCATACATAG
1 GGGTATAATGGTAATTTTGCATACATAG
31794580 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAATGGTAATTTTGCATACATAG
31794608 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAATGGTAATTTTGCATACATAG
31794636 GGGTAT
1 GGGTAT
31794642 TCTAGTACAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
GGGTATAATGGTAATTTTGCATACATAG
Found at i:31800973 original size:11 final size:10
Alignment explanation
Indices: 31800954--31800987 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
31800944 GTACAGACAG
31800954 ATAATTCAGA
1 ATAATTCAGA
31800964 ATATATTCAGA
1 ATA-ATTCAGA
*
31800975 ACAATTCAGA
1 ATAATTCAGA
31800985 ATA
1 ATA
31800988 CTTACAGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (10 bp):
ATAATTCAGA
Found at i:31802147 original size:27 final size:28
Alignment explanation
Indices: 31802096--31802185 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
31802086 GAGATAGAGT
* * *
31802096 CACCAGATATAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATATGTGGCAGTGC
* *
31802125 CACCAGAACAGA-CATATGTGGCAGGGC
1 CACCAGAACAGATAATATGTGGCAGTGC
*
31802152 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATATGTGGCAGT-GC
31802180 CACCAG
1 CACCAG
31802186 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 23 0.45
28 21 0.41
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATATGTGGCAGTGC
Found at i:31802403 original size:27 final size:28
Alignment explanation
Indices: 31802291--31802410 Score: 215
Period size: 28 Copynumber: 4.3 Consensus size: 28
31802281 AAATTAACCC
* *
31802291 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
31802319 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
31802347 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
31802375 TAGGGGTATAATGGTAA-TTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
31802402 TAGGGGTAT
1 TAGGGGTAT
31802411 TCTAGTACAT
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 19 0.21
28 71 0.79
ACGTcount: A:0.32, C:0.07, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:31804241 original size:20 final size:19
Alignment explanation
Indices: 31804216--31804284 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 19
31804206 CTGCACCTTG
31804216 GAAAAATTTTGAAAAGTCGC
1 GAAAAATTTTGAAAAGTC-C
31804236 GAAAAATTCTT--AAAGTTCC
1 GAAAAATT-TTGAAAAG-TCC
31804255 TGGAAAAATTTTGAAAAGTCAC
1 --GAAAAATTTTGAAAAGTC-C
31804277 GAAAAATT
1 GAAAAATT
31804285 CTTAAAGTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
19 5 0.12
20 20 0.48
21 12 0.29
22 5 0.12
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (19 bp):
GAAAAATTTTGAAAAGTCC
Found at i:31804260 original size:21 final size:21
Alignment explanation
Indices: 31804236--31804297 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 21
31804226 GAAAAGTCGC
31804236 GAAAAATTCTTAAAGTTCCTG
1 GAAAAATTCTTAAAGTTCCTG
31804257 GAAAAATT-TTGAAAAG-TCAC--
1 GAAAAATTCTT--AAAGTTC-CTG
31804277 GAAAAATTCTTAAAGTTCCTG
1 GAAAAATTCTTAAAGTTCCTG
31804298 ATTAAGTCCC
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
19 5 0.15
20 12 0.35
21 12 0.35
22 5 0.15
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (21 bp):
GAAAAATTCTTAAAGTTCCTG
Found at i:31804271 original size:41 final size:41
Alignment explanation
Indices: 31804214--31804297 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
31804204 CCCTGCACCT
*
31804214 TGGAAAAATTTTGAAAAGTCGCGAAAAATTCTTAAAGTTCC
1 TGGAAAAATTTTGAAAAGTCACGAAAAATTCTTAAAGTTCC
31804255 TGGAAAAATTTTGAAAAGTCACGAAAAATTCTTAAAGTTCC
1 TGGAAAAATTTTGAAAAGTCACGAAAAATTCTTAAAGTTCC
31804296 TG
1 TG
31804298 ATTAAGTCCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.30
Consensus pattern (41 bp):
TGGAAAAATTTTGAAAAGTCACGAAAAATTCTTAAAGTTCC
Found at i:31809304 original size:30 final size:30
Alignment explanation
Indices: 31809269--31809328 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
31809259 CAAGAAAACC
*
31809269 GAATAAAGAAATCCA-AGATAGAAAAACCCA
1 GAATAAAGAAATCCAGA-ATAAAAAAACCCA
31809299 GAATAAAGAAATCCAGAATAAAAAAACCCA
1 GAATAAAGAAATCCAGAATAAAAAAACCCA
31809329 AGATACGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.62, C:0.17, G:0.12, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAGAATAAAAAAACCCA
Found at i:31809316 original size:15 final size:15
Alignment explanation
Indices: 31809260--31809320 Score: 65
Period size: 15 Copynumber: 4.1 Consensus size: 15
31809250 TAAAGATAAC
*
31809260 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
31809274 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
31809289 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
31809304 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
31809319 AA
1 AA
31809321 AAAACCCAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 11 0.28
15 25 0.64
16 3 0.08
ACGTcount: A:0.62, C:0.15, G:0.13, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:31812230 original size:14 final size:14
Alignment explanation
Indices: 31812211--31812240 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
31812201 CACTTGTTCA
*
31812211 TCACATAATCACTT
1 TCACATAATCAATT
31812225 TCACATAATCAATT
1 TCACATAATCAATT
31812239 TC
1 TC
31812241 CCTTTGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (14 bp):
TCACATAATCAATT
Found at i:31812448 original size:50 final size:49
Alignment explanation
Indices: 31812330--31812455 Score: 164
Period size: 50 Copynumber: 2.6 Consensus size: 49
31812320 CTGGTACGCA
** **
31812330 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCTAATACACG
* *
31812379 TAGTAGCCTGCACTTAGTACTACACACATGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGA-C-CAACAGTCTAATACACG
*
31812429 TAGTAGCCTGCACTTAGTACCACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
31812456 GTGATCACAG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 28 0.41
50 36 0.53
51 4 0.06
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCTAATACACG
Found at i:31819623 original size:21 final size:21
Alignment explanation
Indices: 31819575--31819625 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
31819565 TAGGGACTAA
*
31819575 AATGT-AAAATTGTAAAATTT
1 AATGTAAAAATTCTAAAATTT
31819595 AATG-AAAAATTCTAAAATTT
1 AATGTAAAAATTCTAAAATTT
*
31819615 TATGTAAAAAT
1 AATGTAAAAAT
31819626 GTGCTGGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
AATGTAAAAATTCTAAAATTT
Found at i:31821794 original size:16 final size:17
Alignment explanation
Indices: 31821773--31821807 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
31821763 CACATGGAAG
31821773 TGTTTT-TTGAAAACCT
1 TGTTTTATTGAAAACCT
31821789 TGTTTTCATTGAAAACCT
1 TGTTTT-ATTGAAAACCT
31821807 T
1 T
31821808 TCTTTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
18 11 0.65
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (17 bp):
TGTTTTATTGAAAACCT
Found at i:31830859 original size:43 final size:42
Alignment explanation
Indices: 31830651--31830860 Score: 172
Period size: 43 Copynumber: 4.9 Consensus size: 42
31830641 ATATAACTTG
* * * * **
31830651 TACAATGCC-ATATCCCAGATATGGTCTTATATGTTATCTCT
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTAA
* * * * * * * *
31830692 TATCGATGCCACTGTCCCAGACAGGGTATTAAATGAAATCGAT
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTAA
* **
31830735 TAACAATGCCAATGTCCTAGACATGGTCTTACACATAATCTCAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCT-AA
* * * *
31830779 TACAATGCCAATGTTCCAG-CTGTGGTTTTACACGTAATCTAAA
1 TACAATGCCAATGTCCCAGAC-ATGGTCTTACATGTAATCT-AA
31830822 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
31830861 ACATTTCGAT
Statistics
Matches: 131, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.02
42 7 0.05
43 118 0.90
44 4 0.03
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTAA
Found at i:31831772 original size:40 final size:40
Alignment explanation
Indices: 31831678--31831822 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
31831668 TACTCGAATG
*
31831678 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
31831719 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
31831759 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
31831799 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
31831823 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:31839803 original size:40 final size:40
Alignment explanation
Indices: 31839701--31839845 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
31839691 TACTCGAATG
* *
31839701 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGATAAGTCCCGAAGGCATTTGTGCT-AGCGACT
*
31839742 ACATCC-GGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGA-TAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
31839782 ATATCCGGGATAAGTCTCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGATAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
31839822 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGATAAGTCCCGAAGGC
31839846 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.01
40 59 0.66
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGATAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:31855159 original size:40 final size:40
Alignment explanation
Indices: 31855113--31855337 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
31855103 CTTGCACAAG
* * * * *
31855113 GCCTTCGGGTCTTAGCCTGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
31855153 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
31855193 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
31855233 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCT-AGCACAAAT
* * * * * *
31855273 GCCTTTGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
*
31855314 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
31855338 CATTCGAATA
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 29 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:31855298 original size:120 final size:120
Alignment explanation
Indices: 31855077--31855337 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
31855067 CTCAAGTAAT
* * * *
31855077 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCTGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
* * *
31855141 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * *
31855195 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAG
* * * *
31855259 -CAACTCA-CACGAATGCCTT-TGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACT-AGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
*
31855316 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
31855338 CATTCGAATA
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
118 13 0.11
119 20 0.17
120 54 0.45
121 33 0.28
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:31855328 original size:81 final size:80
Alignment explanation
Indices: 31855077--31855337 Score: 271
Period size: 80 Copynumber: 3.3 Consensus size: 80
31855067 CTCAAGTAAT
* * * * * * * *
31855077 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCTGGATGTGG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAG
*
31855139 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
* * * *
31855155 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
*
31855220 CGCTAGCACAAATGC
66 CACTAGCACAAATGC
* * * * *
31855235 CTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAATGCCTTTGGATCTTAGTCCGGTTATA
1 CTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATGCCTTCGGATCTTAGCCCGGATATA
*
31855298 GTCACCTAGCACAAAAGC
64 GTCA-CTAGCACAAATGC
31855316 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
31855338 CATTCGAATA
Statistics
Matches: 153, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 91 0.59
81 34 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:31862586 original size:40 final size:40
Alignment explanation
Indices: 31862532--31862756 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
31862522 CTTGCATAAG
* * * *
31862532 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
31862572 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* ** * *
31862612 GTCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * ** * *
31862652 GCCTTCGGGTCTTAGCCCGAATAGAGAAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
31862692 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
31862733 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
31862757 CATTCGAATA
Statistics
Matches: 151, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
39 2 0.01
40 120 0.79
41 26 0.17
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:31862628 original size:80 final size:80
Alignment explanation
Indices: 31862532--31862756 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
31862522 CTTGCATAAG
* * *
31862532 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
***
31862597 GTCGCTAGCACAAAT
66 GAAACTAGCACAAAT
* * * * * * *
31862612 GTCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGAATAGA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
31862677 GAAACTCGCACGAAT
66 GAAACTAGCACAAAT
* * * *
31862692 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
31862757 CATTCGAATA
Statistics
Matches: 118, Mismatches: 26, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
80 87 0.74
81 31 0.26
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GAAACTAGCACAAAT
Found at i:31871938 original size:37 final size:37
Alignment explanation
Indices: 31871867--31871957 Score: 112
Period size: 37 Copynumber: 2.5 Consensus size: 37
31871857 TTAGTGCCAA
*
31871867 GGCGTGTTATCGGTTGGATTAGCTCTCATGAGCATTT
1 GGCGTGTTATCGGTTGGATTAGCTCTCATAAGCATTT
* ** *
31871904 GGCGTGTTATTGGTTGGATTAGCTCTTGTAAGCATCT
1 GGCGTGTTATCGGTTGGATTAGCTCTCATAAGCATTT
* *
31871941 AGCATGTT-TCGGTTGGA
1 GGCGTGTTATCGGTTGGA
31871958 CTACTTGTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
36 8 0.17
37 38 0.83
ACGTcount: A:0.16, C:0.14, G:0.31, T:0.38
Consensus pattern (37 bp):
GGCGTGTTATCGGTTGGATTAGCTCTCATAAGCATTT
Found at i:31872914 original size:54 final size:54
Alignment explanation
Indices: 31872850--31872962 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
31872840 TGTGTGCCAC
* * * *
31872850 ACACGGCCATGTGT-ATTAAGTCAGTG-TGTTGCACGGCCTAGCACATGGCCTGCA
1 ACACGGCCATGTGTCA-CAAGTCAGAGAT-TTACACGGCCTAGCACATGGCCTACA
* *
31872904 ACACGGCCATGTGTCACAAGTCAGAGATTTACACGGTCTGGCACATGGCCTACA
1 ACACGGCCATGTGTCACAAGTCAGAGATTTACACGGCCTAGCACATGGCCTACA
31872958 ACACG
1 ACACG
31872963 ATTGTGTGAC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
54 49 0.96
55 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (54 bp):
ACACGGCCATGTGTCACAAGTCAGAGATTTACACGGCCTAGCACATGGCCTACA
Found at i:31885000 original size:32 final size:32
Alignment explanation
Indices: 31884958--31885030 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 32
31884948 ATACGGCTCT
* *
31884958 AAGCCTTCAATAGCGGTATTATAATTGGCACA
1 AAGCCATCAATAACGGTATTATAATTGGCACA
* **
31884990 AAGCCATCAATAACTGTATTATGTTTGGCACA
1 AAGCCATCAATAACGGTATTATAATTGGCACA
*
31885022 TAGCCATCA
1 AAGCCATCA
31885031 GCGACGGTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (32 bp):
AAGCCATCAATAACGGTATTATAATTGGCACA
Found at i:31885588 original size:27 final size:27
Alignment explanation
Indices: 31885558--31885610 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
31885548 AACGATCATT
31885558 TTACCCTACAAGGGTATTTCAGTAATC
1 TTACCCTACAAGGGTATTTCAGTAATC
* *
31885585 TTACCCTACAGGGGTATTTCGGTAAT
1 TTACCCTACAAGGGTATTTCAGTAAT
31885611 TTCACAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TTACCCTACAAGGGTATTTCAGTAATC
Found at i:31885626 original size:27 final size:27
Alignment explanation
Indices: 31885569--31885699 Score: 120
Period size: 27 Copynumber: 4.9 Consensus size: 27
31885559 TACCCTACAA
* ** *
31885569 GGGTATTTCAGTAATCTTAC-CCTACAG
1 GGGTATTTCAGTAATTTTACAAAT-CGG
* * *
31885596 GGGTATTTCGGTAATTTCACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGG
** **
31885623 GGGTATTTTGGTAATTTTACAACCCGG
1 GGGTATTTCAGTAATTTTACAAATCGG
* * *
31885650 GGGTATTTTAATACTTTTACAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGG
31885677 GGGTATTTCAGTAATTTTACAAA
1 GGGTATTTCAGTAATTTTACAAA
31885700 GCAGGGGTCT
Statistics
Matches: 83, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
27 82 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGG
Found at i:31885653 original size:54 final size:54
Alignment explanation
Indices: 31885568--31885698 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
31885558 TTACCCTACA
* * **
31885568 AGGGTATTTCAGTAATCTTAC--CCTACAGGGGTATTTCGGTAATTTCACAAATCG
1 AGGGTATTTCAGTAATTTTACAACC--CGGGGGTATTTCAATAATTTCACAAATCG
** * * *
31885622 AGGGTATTTTGGTAATTTTACAACCCGGGGGTATTTTAATACTTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAACCCGGGGGTATTTCAATAATTTCACAAATCG
*
31885676 GGGGTATTTCAGTAATTTTACAA
1 AGGGTATTTCAGTAATTTTACAA
31885699 AGCAGGGGTC
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
54 61 0.97
56 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAACCCGGGGGTATTTCAATAATTTCACAAATCG
Found at i:31886166 original size:17 final size:17
Alignment explanation
Indices: 31886144--31886183 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
31886134 TCCATGTGGT
31886144 CCCACAAGCCCATTG-GG
1 CCCACAAGCCCA-TGAGG
31886161 CCCACAAGCCCATGAGG
1 CCCACAAGCCCATGAGG
31886178 CCCACA
1 CCCACA
31886184 CAACCCAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.28, C:0.45, G:0.20, T:0.07
Consensus pattern (17 bp):
CCCACAAGCCCATGAGG
Found at i:31887885 original size:40 final size:40
Alignment explanation
Indices: 31887848--31888027 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
31887838 GCTACTCGTT
*
31887848 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
31887888 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
31887928 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * ** * *
31887967 CAAATGCCTTC-GGATCTTAGTCCGGATATGGCCACTTAGAA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
31888008 CAAA-GCCTTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGC
31888028 TCGGACATCA
Statistics
Matches: 116, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 71 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:31887965 original size:39 final size:40
Alignment explanation
Indices: 31887848--31887993 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
31887838 GCTACTCGTT
*
31887848 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
31887888 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
31887928 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
31887967 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
31887994 ATGGCCACTT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.34
40 58 0.62
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:31896412 original size:26 final size:26
Alignment explanation
Indices: 31896373--31896422 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
31896363 ATAAGAATTC
31896373 CTTCTGAAATTAAATAGT-CACATATA
1 CTTCTGAAATTAAAT-GTACACATATA
31896399 CTTCTGAGAA-TAAATGTACACATA
1 CTTCTGA-AATTAAATGTACACATA
31896423 GAATGCCGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.82
27 2 0.09
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (26 bp):
CTTCTGAAATTAAATGTACACATATA
Found at i:31898304 original size:13 final size:13
Alignment explanation
Indices: 31898286--31898311 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31898276 TTGAATCCAT
31898286 ACCAAAACAATCA
1 ACCAAAACAATCA
31898299 ACCAAAACAATCA
1 ACCAAAACAATCA
31898312 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:31905451 original size:25 final size:27
Alignment explanation
Indices: 31905422--31905483 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 27
31905412 TTTTACTATA
31905422 TTTATTATTACGA-ATATTT-T-AAATT
1 TTTATTATTA-GATATATTTATAAAATT
*
31905447 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTAGATATATTTATAAAATT
*
31905474 ATTATTATTA
1 TTTATTATTA
31905484 TTATTATTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 2 0.06
25 15 0.48
26 1 0.03
27 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTATTATTAGATATATTTATAAAATT
Found at i:31910113 original size:25 final size:28
Alignment explanation
Indices: 31910084--31910146 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 28
31910074 TTTTACTGTA
31910084 TTTATTATTATG-GATATTT-T-AAATT
1 TTTATTATTATGAGATATTTATAAAATT
* *
31910109 TTTATGATTA-GATATATTTATAAAATT
1 TTTATTATTATGAGATATTTATAAAATT
*
31910136 ATTATTATTAT
1 TTTATTATTAT
31910147 AATTATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
24 1 0.03
25 15 0.50
26 1 0.03
27 13 0.43
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (28 bp):
TTTATTATTATGAGATATTTATAAAATT
Found at i:31910150 original size:15 final size:15
Alignment explanation
Indices: 31910132--31910160 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
31910122 ATATTTATAA
31910132 AATTATTATTATTAT
1 AATTATTATTATTAT
31910147 AATTATTATTATTA
1 AATTATTATTATTA
31910161 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:31911413 original size:40 final size:40
Alignment explanation
Indices: 31911330--31911553 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
31911320 TTGAATGATG
* * * *
31911330 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
31911370 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
31911410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
31911450 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
31911489 TCCGGGTTAAGTCCCGAAGGCAATTGTGCG-GTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
31911529 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
31911554 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 66 0.41
40 88 0.54
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:31911491 original size:79 final size:80
Alignment explanation
Indices: 31911330--31911553 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 80
31911320 TTGAATGATG
* * * * *
31911330 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
31911393 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
31911410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
31911473 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * * * *
31911489 TCCGGGTTAAGTCCCGAAGGCAATTGTGCG-GTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
31911553 G
66 G
31911554 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
78 15 0.12
79 72 0.55
80 33 0.25
81 9 0.07
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:31915427 original size:19 final size:19
Alignment explanation
Indices: 31915403--31915440 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
31915393 AATTGAGATA
*
31915403 GTAGAATTTCCTTTGGAAC
1 GTAGAATTTCCGTTGGAAC
31915422 GTAGAATTTCCGTTGGAAC
1 GTAGAATTTCCGTTGGAAC
31915441 CTTAGGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (19 bp):
GTAGAATTTCCGTTGGAAC
Found at i:31915551 original size:46 final size:45
Alignment explanation
Indices: 31915493--31915665 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 45
31915483 ATTCATGTGT
*
31915493 GAGTTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGA
*
31915539 GAGTCAGTGTAAGACCATGTCTGGGACATGGCAGCGG--CATTGA-GA
1 GAGTCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-ATGA
* *
31915584 CGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA
1 -GA-GTC-AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATG-A
* * *
31915634 -AGCCAGTGTAAGATATGTCTGTGACATGCATC
1 GAGTCAGTGTAAGACATGTCTGGGACATGCATC
31915666 AGCTACGAGA
Statistics
Matches: 107, Mismatches: 8, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
45 6 0.06
46 48 0.45
47 32 0.30
48 17 0.16
49 2 0.02
50 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGA
Found at i:31915692 original size:46 final size:46
Alignment explanation
Indices: 31915502--31915713 Score: 119
Period size: 46 Copynumber: 4.5 Consensus size: 46
31915492 TGAGTTAGTG
* * * * *
31915502 TAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGTCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGTA-AGCCAGTA
* * * * * * * *
31915548 TAAGACCATGTCTGGGACATGGCAGCGGCATTGAGACG-AGGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCCAGTA
* *
31915596 TAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTA
* * * *
31915642 TAAGATATGTCTGTGACATGCATCAG-CTACGAGATG-ATAGTCGGTA
1 TAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGTA-AGCCAGTA
* *
31915688 TAAGACCGTGTCTAGGACATGGCATC
1 TAAGA-CATGTCTGGGACAT-GCATC
31915714 GGCACCTTAC
Statistics
Matches: 133, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
45 3 0.02
46 64 0.48
47 39 0.29
48 26 0.20
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTA
Found at i:31917215 original size:27 final size:27
Alignment explanation
Indices: 31917185--31917325 Score: 92
Period size: 27 Copynumber: 5.2 Consensus size: 27
31917175 TAAGTTGTAG
31917185 AATTACTAAAATACCCCT-AGTTTGCAA
1 AATTACTAAAATACCCCTGA-TTTGCAA
* **
31917212 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACTAAAATACCCCTGATTTGCAA
* * *
31917239 AATTACTGAAATA-CCCTCGACTTGTAA
1 AATTACTAAAATACCCCT-GATTTGCAA
* ** * *
31917266 AATTATTGGAATA-CCCTCGACTTGTAA
1 AATTACTAAAATACCCCT-GATTTGCAA
* * *
31917293 AATTACCAAAGTA-CCCTCGATTTACAA
1 AATTACTAAAATACCCCT-GATTTGCAA
31917320 AATTAC
1 AATTAC
31917326 CGTTTTACTC
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.04
27 90 0.95
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGATTTGCAA
Found at i:31917326 original size:27 final size:27
Alignment explanation
Indices: 31917277--31917352 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
31917267 ATTATTGGAA
* **
31917277 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCAAAG
****
31917304 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAG
*
31917331 TACTCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
31917353 AGAAATACCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAG
Found at i:31917377 original size:27 final size:27
Alignment explanation
Indices: 31917347--31917400 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
31917337 CGATTTACAA
*
31917347 AATTACAGAAATACCCTTGTAAGGTAG
1 AATTACAGAAATACCCCTGTAAGGTAG
* *
31917374 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACAGAAATACCCCTGTAAGGTAG
31917401 GACTACCGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACAGAAATACCCCTGTAAGGTAG
Found at i:31917407 original size:27 final size:27
Alignment explanation
Indices: 31917354--31917409 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
31917344 CAAAATTACA
* *
31917354 GAAATACCCTTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAAGGTAGAACTACC
* *
31917381 GAAATACCCCTGTAGGGTAGGACTACC
1 GAAATACCCCTGTAAGGTAGAACTACC
31917408 GA
1 GA
31917410 TTTACTCCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
GAAATACCCCTGTAAGGTAGAACTACC
Found at i:31924619 original size:47 final size:48
Alignment explanation
Indices: 31924556--31924780 Score: 373
Period size: 49 Copynumber: 4.7 Consensus size: 48
31924546 ATGATAGTAT
31924556 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
31924603 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
* * *
31924650 TGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
31924699 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
31924748 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
31924781 CCCGAAGGGC
Statistics
Matches: 170, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
47 78 0.46
49 88 0.52
50 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (48 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
Found at i:31924723 original size:96 final size:95
Alignment explanation
Indices: 31924556--31924780 Score: 371
Period size: 96 Copynumber: 2.3 Consensus size: 95
31924546 ATGATAGTAT
31924556 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
31924621 ATGAATGTGAAAGTG-TATATATGTGATAA
66 ATGAATGTGAAAGTGATATATATGTGATAA
* * *
31924650 TGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
31924715 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTG-ATATATATGTGATAA
31924748 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
31924781 CCCGAAGGGC
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
94 31 0.26
96 46 0.38
98 39 0.32
99 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGATATATATGTGATAA
Found at i:31924954 original size:37 final size:37
Alignment explanation
Indices: 31924898--31924976 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
31924888 CCGAGCTCTA
* * *
31924898 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
31924935 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
31924972 AAGAC
1 AAGAC
31924977 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:31932196 original size:244 final size:246
Alignment explanation
Indices: 31931622--31932816 Score: 2121
Period size: 244 Copynumber: 4.9 Consensus size: 246
31931612 CTATTAAAAT
31931622 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
31931687 ACAATTGCTCACAAATTC-AACTAACATCAAACATATGTTTGTATCACATATCAAATAATCAACT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATG-TTGTATCACATATCAAATAATCAACT
31931751 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
130 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
*
31931816 ATAC-AAACTTATC-TTGCCCGTTGAACCATACCGAATCTTAAACACTGTTTA
195 ATACAAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTTAACACTG-TTA
31931867 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
31931932 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTT
*
31931997 ACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGC-TG-GTTATACATTCA
131 ACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTCA
31932060 TACAAAAC-TATCTTTGCCCG-TGAACCATACCGAATCTTTAACACTTGTTTA
196 TACAAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTTAACAC-TG-TTA
31932111 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
*
31932176 ACAATTGCTCACAAATTCAAACTAACATCAAACATATATTTGTATCACATATCAAATAATCAACT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATAT-GTTGTATCACATATCAAATAATCAACT
31932241 TACC-TA-TTTCAAATAGGTAATCAACTATCACATACCT-G-CACTTAGCTTGA-TTATACA-TC
130 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
31932300 ATAC-AAACTTATCTTTGCCC-TTGAACCATACCGAATCTTTAAACACTG-TA
195 ATACAAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTT-AACACTGTTA
31932350 -ATATACTCATGTA-CAAACCTTAATACCATATAA-TACACTTAAATTA-GGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
31932411 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTT
31932476 ACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTCA
131 ACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTCA
31932541 TACAAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTTAACACTGTTA
196 TACAAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTTAACACTGTTA
31932592 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
31932657 AC-ATTGCTCAC-AATTCAAACTAACATC-AACATATGTTTGTATCACATATCAAATAATCAACT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATG-TTGTATCACATATCAAATAATCAACT
31932719 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATTACATT
130 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTA-TACATT
31932784 CATACCAAAACTTATCTTTGCCCGTTGAACCAT
194 CATA-CAAAACTTATCTTTGCCCGTTGAACCAT
31932817 TCGGAATTGG
Statistics
Matches: 920, Mismatches: 4, Indels: 51
0.94 0.00 0.05
Matches are distributed among these distances:
234 30 0.03
235 54 0.06
236 44 0.05
237 21 0.02
238 25 0.03
239 9 0.01
240 10 0.01
241 69 0.08
242 37 0.04
243 93 0.10
244 243 0.26
245 221 0.24
246 64 0.07
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (246 bp):
CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTT
ACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTCA
TACAAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTTAACACTGTTA
Found at i:31932674 original size:479 final size:490
Alignment explanation
Indices: 31931622--31932816 Score: 2158
Period size: 479 Copynumber: 2.5 Consensus size: 490
31931612 CTATTAAAAT
31931622 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
31931687 ACAATTGCTCACAAATTC-AACTAACATCAAACATATGTTTGTATCACATATCAAATAATCAACT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTTGTATCACATATCAAATAATCAACT
31931751 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
131 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
31931816 ATACAAACTTATC-TTGCCCGTTGAACCATACCGAATCTTAAACACTGTTTACATATACTCATGT
196 ATACAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTAAACACTG-TTACATATACTCATGT
31931880 ACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTCACAATTGCTCACA
260 ACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTCACAATTGCTCACA
31931945 AATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTTACCTTATTTTCAA
325 AATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTTACCTTATTTTCAA
31932010 ATAGGTAATCAACTATCACATACCTGGTCACTTAGCTGGTTATACATTCATACAAAACTATCTTT
390 ATAGGTAATCAACTATCACATACCTGGTCACTTAGCTGGTTATACATTCATACAAAACTATCTTT
31932075 GCCCGTGAACCATACCGAATCTTTAACACTTGTTTA
455 GCCCGTGAACCATACCGAATCTTTAACACTTGTTTA
31932111 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
*
31932176 ACAATTGCTCACAAATTCAAACTAACATCAAACATATATTTGTATCACATATCAAATAATCAACT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTTGTATCACATATCAAATAATCAACT
31932241 TACC-TA-TTTCAAATAGGTAATCAACTATCACATACCT-G-CACTTAGCTTGA-TTATACA-TC
131 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
31932300 ATACAAACTTATCTTTGCCC-TTGAACCATACCGAATCTTTAAACACTG-TA-ATATACTCATGT
196 ATACAAACTTATCTTTGCCCGTTGAACCATACCGAATC-TTAAACACTGTTACATATACTCATGT
31932362 A-CAAACCTTAATACCATATAA-TACACTTAAATTA-GGCTGAATATACTTCACAATTGCTCACA
260 ACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTCACAATTGCTCACA
31932424 AATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTTACCTTATTTTCAA
325 AATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTTACCTTATTTTCAA
*
31932489 ATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTCATACAAAACTTATC
390 ATAGGTAATCAACTATCACATACCTGGTCACTTAGC-TG-GTTATACATTCATACAAAAC-TATC
31932554 TTTGCCCGTTGAACCATACCGAATCTTTAACAC-TG-TTA
452 TTTGCCCG-TGAACCATACCGAATCTTTAACACTTGTTTA
31932592 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
1 CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
31932657 AC-ATTGCTCAC-AATTCAAACTAACATC-AACATATGTTTGTATCACATATCAAATAATCAACT
66 ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTTGTATCACATATCAAATAATCAACT
31932719 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATTACATT
131 TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTA-TACATT
31932784 CATACCAAAACTTATCTTTGCCCGTTGAACCAT
195 CATA-C-AAACTTATCTTTGCCCGTTGAACCAT
31932817 TCGGAATTGG
Statistics
Matches: 686, Mismatches: 3, Indels: 35
0.95 0.00 0.05
Matches are distributed among these distances:
478 38 0.06
479 147 0.21
480 55 0.08
481 110 0.16
482 39 0.06
483 29 0.04
484 36 0.05
485 28 0.04
486 13 0.02
487 17 0.02
488 40 0.06
489 85 0.12
490 49 0.07
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (490 bp):
CATATACTCATGTACCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTC
ACAATTGCTCACAAATTCAAACTAACATCAAACATATGTTTGTATCACATATCAAATAATCAACT
TACCTTATTTTCAAATAGGTAATCAACTATCACATACCTGGTCACTTAGCTTGATTTATACATTC
ATACAAACTTATCTTTGCCCGTTGAACCATACCGAATCTTAAACACTGTTACATATACTCATGTA
CCAAACCTTAATACCATATAATTACACTTAAATTATGGCTGAATATACTTCACAATTGCTCACAA
ATTCAAACTAACATCAAACATATGTTGTATCACATATCAAATAATCAACTTACCTTATTTTCAAA
TAGGTAATCAACTATCACATACCTGGTCACTTAGCTGGTTATACATTCATACAAAACTATCTTTG
CCCGTGAACCATACCGAATCTTTAACACTTGTTTA
Found at i:31932958 original size:13 final size:13
Alignment explanation
Indices: 31932940--31932971 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
31932930 CTCACAACAT
*
31932940 ATATCGGAGTCAC
1 ATATCGGAGTAAC
31932953 ATATCGGAGTAAC
1 ATATCGGAGTAAC
31932966 ATATCG
1 ATATCG
31932972 ATGCATGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (13 bp):
ATATCGGAGTAAC
Found at i:31935026 original size:39 final size:39
Alignment explanation
Indices: 31934983--31935111 Score: 195
Period size: 39 Copynumber: 3.3 Consensus size: 39
31934973 GGTCTTTAAC
** *
31934983 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
31935022 CCGGAATATATTTCTAGCATATAGCCTGCGGACCTCATGT
1 CCGG-ATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
31935062 CCGGATCTTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
31935101 CCGGATATTTT
1 CCGGATATTTT
31935112 CAATCTCATA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 46 0.57
40 34 0.43
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:31951640 original size:55 final size:54
Alignment explanation
Indices: 31951532--31951739 Score: 224
Period size: 55 Copynumber: 3.8 Consensus size: 54
31951522 ATTAGGGTTT
* * *
31951532 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * * *
31951587 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG-C
* * * *
31951643 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * *
31951695 AAGGATACCATGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
31951740 TCAAAAGGAT
Statistics
Matches: 126, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 43 0.34
54 8 0.06
55 67 0.53
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:31951738 original size:108 final size:110
Alignment explanation
Indices: 31951539--31951739 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
31951529 TTTAAGGATA
*
31951539 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
31951604 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGAAAAGGTC
** * *
31951649 CCATGTAAGACCATGCCAAGGCATG-GTATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
31951711 ACCATGTCAAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
31951740 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGAAAAGGTC
Found at i:31951892 original size:23 final size:24
Alignment explanation
Indices: 31951855--31951899 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
31951845 AAGATAAGGT
**
31951855 AAGGTAAGATGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
31951878 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
31951900 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:31951999 original size:16 final size:16
Alignment explanation
Indices: 31951978--31952008 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31951968 ATAAATTTGA
31951978 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
31951994 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
31952009 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:31961238 original size:27 final size:26
Alignment explanation
Indices: 31961215--31961502 Score: 279
Period size: 27 Copynumber: 10.7 Consensus size: 26
31961205 TTAGTTTACC
* *
31961215 AAATTACCGAAATATCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTATA
*
31961242 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-TGGTTTATA
* *
31961269 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTATA
* * *
31961296 AAATTACCAAAATACCATTAGTTTACA
1 AAATTACCAAAATACC-CTGGTTTATA
*
31961323 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTATA
* * *
31961350 AAATTACTAAAATACTCTTTGTTTATA
1 AAATTACCAAAATAC-CCTGGTTTATA
* *
31961377 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTATA
* *
31961404 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTATA
* * *
31961431 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTATA
* * *
31961458 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCCTGGTTTATA
*
31961485 AAATTACTAAAATACCCT
1 AAATTACCAAAATACCCT
31961503 CGACCTGTAA
Statistics
Matches: 223, Mismatches: 29, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
26 14 0.06
27 198 0.89
28 11 0.05
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTATA
Found at i:31961288 original size:54 final size:54
Alignment explanation
Indices: 31961205--31961501 Score: 371
Period size: 54 Copynumber: 5.5 Consensus size: 54
31961195 TTAGAATACT
** * * *
31961205 TTAGTTTACCAAATTACCGAAATATCCCTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * *
31961259 TTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCA
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * *
31961313 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACTC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * *
31961367 TTTGTTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * * *
31961421 CTAGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * *
31961475 CT-GATTTGTGAAATTACTAAAATACCC
1 TTAG-TTTATAAAATTACCAAAATACCC
31961502 TCGACCTGTA
Statistics
Matches: 215, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.00
54 214 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (54 bp):
TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:31961474 original size:81 final size:81
Alignment explanation
Indices: 31961215--31961549 Score: 356
Period size: 81 Copynumber: 4.1 Consensus size: 81
31961205 TTAGTTTACC
* * * * * * *
31961215 AAATTACCGAAATATCCC-TGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAA
* *
31961279 AATACCCCTGGTTTGTA
65 AATACCCTTAGTTTGTA
* **
31961296 AAATTACCAAAATACCATTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AA
* * *
31961360 AATACTCTTTGTTTATA
65 AATACCCTTAGTTTGTA
*
31961377 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
31961442 ATACCCTTAGTTTGTA
66 ATACCCTTAGTTTGTA
* * * *** **
31961458 AAATTACCAAAATACCCCT-GATTTGTGAAATTACTAAAATA-CCCTCGACCTGTAAAATTATTG
1 AAATTACCAAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTATCA
* *
31961521 AAATACCC-TCGACTTGTA
64 AAATACCCTTAG-TTTGTA
31961539 AAATTACCAAA
1 AAATTACCAAA
31961550 GCACTCCTGA
Statistics
Matches: 217, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
80 10 0.05
81 206 0.95
82 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
ATACCCTTAGTTTGTA
Found at i:31961608 original size:27 final size:27
Alignment explanation
Indices: 31961215--31961609 Score: 270
Period size: 27 Copynumber: 14.6 Consensus size: 27
31961205 TTAGTTTACC
* *
31961215 AAATTACCGAAATATCCCT-GGTTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
* * * *
31961242 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
31961269 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
31961296 AAATTACCAAAATACCAT-TAGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
31961323 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * *
31961350 AAATTACTAAAATACTCTTTG-TTTATA
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
31961377 AAATTACCAAAATACCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
31961404 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
31961431 AAATTATCAAAATACCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
31961458 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
31961485 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
31961512 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** **
31961539 AAATTACCAAAGCACTCCT-GATTTACA
1 AAATTACCAAAATAC-CCTCGATTTGTA
* *** **
31961566 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
31961593 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
31961610 CTATAGGGTA
Statistics
Matches: 296, Mismatches: 55, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
26 9 0.03
27 280 0.95
28 7 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:31961624 original size:27 final size:27
Alignment explanation
Indices: 31961594--31961736 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
31961584 CGATTTACAA
* *
31961594 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
31961621 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
31961648 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
31961675 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
31961702 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
31961729 AATTACCA
1 AATTACCA
31961737 TTTTACCCCT
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:31961655 original size:81 final size:79
Alignment explanation
Indices: 31961565--31961746 Score: 197
Period size: 81 Copynumber: 2.3 Consensus size: 79
31961555 CCTGATTTAC
* *
31961565 AGAATTACCATTTTACCCTCGATTTA-CAAAATTACTAAAATACCCCTATAGGGTAGAATTACCG
1 AGAAATACCATTTTACCC-C--TGTAGCAAAATTACTAAAATACCCCTATAGGGTAGAATTACCG
31961629 AAATACCCTTGTAGGGT
63 AAATACCCTTGTAGGGT
*** * * * *
31961646 AGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACCATTTTACCCCTGTA--GCAAAATTACTAAAATACCCCTATAGGGTAGAATTACCGA
* *
31961711 GATACCCTTGTGGGGT
64 AATACCCTTGTAGGGT
31961727 A-AAATTACCATTTTACCCCT
1 AGAAA-TACCATTTTACCCCT
31961747 AGGGTGTTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
78 3 0.04
80 4 0.05
81 76 0.92
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (79 bp):
AGAAATACCATTTTACCCCTGTAGCAAAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAA
TACCCTTGTAGGGT
Found at i:31962095 original size:32 final size:32
Alignment explanation
Indices: 31962049--31962109 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
31962039 CGCTGCAATT
* *
31962049 TGGTGGCTTCGCCACAATATATATATCTGTTC
1 TGGTGGCCTAGCCACAATATATATATCTGTTC
* *
31962081 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
31962110 GTAACTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTTC
Found at i:31962262 original size:6 final size:6
Alignment explanation
Indices: 31962253--31962441 Score: 120
Period size: 6 Copynumber: 30.7 Consensus size: 6
31962243 ATTCACATTT
* * *
31962253 TGATTC TGATTC TG-TTACC TGATAC TGATTC TGATTC T-ATTACC TAATTT
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATT--C TGATTC
* * *
31962303 TGATTT TGGTTC TGATTC TGATTC TG-TTAC GTGATAC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT-C -TGATTC TGATTC TGATTC
* * * * *
31962352 TG-TTACC TAATTC TGATTC TGATTT TGATTT TGATTC TG-TCACC TAATTC
1 TGATT--C TGATTC TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC
* *
31962402 TGATTC TGATTC TGATTC TCATTT TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
31962442 AATGTTTCTT
Statistics
Matches: 145, Mismatches: 21, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
5 11 0.08
6 113 0.78
7 13 0.09
8 8 0.06
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:31962315 original size:25 final size:25
Alignment explanation
Indices: 31962249--31962307 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
31962239 TTGCATTCAC
* *
31962249 ATTTTGATTCTGATTCTGTTACCTG
1 ATTTTGATTCTGATTCTATTACCTA
**
31962274 ATACTGATTCTGATTCTATTACCTA
1 ATTTTGATTCTGATTCTATTACCTA
31962299 ATTTTGATT
1 ATTTTGATT
31962308 TTGGTTCTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (25 bp):
ATTTTGATTCTGATTCTATTACCTA
Found at i:31962344 original size:37 final size:37
Alignment explanation
Indices: 31962271--31962353 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
31962261 ATTCTGTTAC
* **
31962271 CTGATACTGATTCTGATTCTATTACCTAATTTTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
* * * * *
31962308 TTGGTTCTGATTCTGATTCTGTTACGTGATACTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
31962345 CTGATTCTG
1 CTGATTCTG
31962354 TTACCTAATT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
Found at i:31962348 original size:25 final size:25
Alignment explanation
Indices: 31962314--31962375 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
31962304 GATTTTGGTT
* *
31962314 CTGATTCTGATTCTGTTACGTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
31962339 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
31962364 CTGATTCTGATT
1 CTGATTCTGATT
31962376 TTGATTTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:31962350 original size:62 final size:62
Alignment explanation
Indices: 31962253--31962441 Score: 247
Period size: 62 Copynumber: 3.1 Consensus size: 62
31962243 ATTCACATTT
*
31962253 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTTTGGTTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTCTGGTTC
* * * * *
31962315 TGATTCTGATTCTGTTACGTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTT
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTCTGGTTC
* * * * * *
31962377 TGATTTTGATTCTGTCACCTAATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAGTTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT-ATTACCTAATTTTGATTCTGGTTC
31962438 TGAT
1 TGAT
31962442 AATGTTTCTT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
61 18 0.17
62 89 0.82
63 2 0.02
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (62 bp):
TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTCTGGTTC
Found at i:31962381 original size:37 final size:37
Alignment explanation
Indices: 31962334--31962420 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 37
31962324 TTCTGTTACG
* *
31962334 TGATACTGATTCTGATTCTGTTACCTAATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
* *
31962371 TGATTTTGATTTTGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
31962408 TGATTCTGATTCT
1 TGATTCTGATTCT
31962421 CATTTTGATT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
Found at i:31962429 original size:18 final size:18
Alignment explanation
Indices: 31962312--31962441 Score: 61
Period size: 19 Copynumber: 7.1 Consensus size: 18
31962302 TTGATTTTGG
*
31962312 TTCTGATTCTGATTCTG-
1 TTCTGATTCTCATTCTGA
* *
31962329 TTACGTGATACTGATTCTGA
1 TT-C-TGATTCTCATTCTGA
*
31962349 TTCTG-TTACCTAATTCTGA
1 TTCTGATT--CTCATTCTGA
* * *
31962368 TTCTGATTTTGATTTTGA
1 TTCTGATTCTCATTCTGA
* *
31962386 TTCTG-TCACCTAATTCTGA
1 TTCTGAT--TCTCATTCTGA
* *
31962405 TTCTGATTCTGATTCTCA
1 TTCTGATTCTCATTCTGA
*
31962423 TTTTGATTCT-AGTTCTGA
1 TTCTGATTCTCA-TTCTGA
31962441 T
1 T
31962442 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 15, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
17 5 0.06
18 38 0.43
19 40 0.45
20 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (18 bp):
TTCTGATTCTCATTCTGA
Found at i:31964079 original size:42 final size:42
Alignment explanation
Indices: 31964019--31964136 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
31964009 TAGGGTTAGT
* *
31964019 TGAGATTAAGTGTAAGACCATATCTAGAATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
* * * * *
31964061 TGAGATTTCGTGTGAGACCATAGT-TGGGCTATTGGCATTGATA
1 TGAGATTACGTGTAAGACCATA-TCTAGGATA-TGGCATCGATA
** *
31964104 TGAGATCCCATGTAAGACCATATCTAGGATATG
1 TGAGATTACGTGTAAGACCATATCTAGGATATG
31964137 ACATTGGTAT
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:31969150 original size:15 final size:16
Alignment explanation
Indices: 31969118--31969151 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
31969108 ATTTCATCTC
*
31969118 ATTTGCATTTAGGTTA
1 ATTTGCATCTAGGTTA
31969134 ATTTGCATCTA-GTTA
1 ATTTGCATCTAGGTTA
31969149 ATT
1 ATT
31969152 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (16 bp):
ATTTGCATCTAGGTTA
Found at i:31973921 original size:21 final size:20
Alignment explanation
Indices: 31973895--31973937 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
31973885 GGAATTTGAA
31973895 TTGAGT-AGTTGAGGGAGTGGT
1 TTGAGTGAGTTGA-GGAG-GGT
*
31973916 TTGAGTGATTTGAGGAGGGT
1 TTGAGTGAGTTGAGGAGGGT
31973936 TT
1 TT
31973938 TTATGATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (20 bp):
TTGAGTGAGTTGAGGAGGGT
Found at i:31975140 original size:106 final size:107
Alignment explanation
Indices: 31974971--31975201 Score: 347
Period size: 106 Copynumber: 2.2 Consensus size: 107
31974961 CGTACCTGAA
* *
31974971 CCCTAATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGA
1 CCCTAATGTGATAAAATAACGATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGA
* * * *
31975036 TAAAATGACGATTTTTCCCTTATGTGGT-AATGACGATTTTT
66 TAAAATGACAATTTTTCCCTCATGTGATAAATGACAATTTTT
* * *
31975077 CCCTCATGTGGTAAAATAACGATTTTGCCTTCATGTGATAAAATGACGATTTTGCCCTCATGTGA
1 CCCTAATGTGATAAAATAACGATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGA
*
31975142 TAAAATGACAATTTTTCCCTCATGTGATAAAATGATAATTTTT
66 TAAAATGACAATTTTTCCCTCATGTGAT-AAATGACAATTTTT
*
31975185 CCCTTATGTGATAAAAT
1 CCCTAATGTGATAAAAT
31975202 GATCGAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
106 85 0.77
108 26 0.23
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (107 bp):
CCCTAATGTGATAAAATAACGATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGA
TAAAATGACAATTTTTCCCTCATGTGATAAATGACAATTTTT
Found at i:31975204 original size:27 final size:27
Alignment explanation
Indices: 31974971--31975203 Score: 317
Period size: 27 Copynumber: 8.7 Consensus size: 27
31974961 CGTACCTGAA
* * *
31974971 CCCTAATGTGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTT
*
31974998 CCCTCATGTGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTT
31975025 CCCTCATGTGATAAAATGACGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTT
* *
31975052 CCCTTATGTGGT--AATGACGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTT
* * *
31975077 CCCTCATGTGGTAAAATAACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTT
* *
31975104 CCTTCATGTGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTT
*
31975131 CCCTCATGTGATAAAATGACAATTTTT
1 CCCTCATGTGATAAAATGACGATTTTT
**
31975158 CCCTCATGTGATAAAATGATAATTTTT
1 CCCTCATGTGATAAAATGACGATTTTT
*
31975185 CCCTTATGTGATAAAATGA
1 CCCTCATGTGATAAAATGA
31975204 TCGAAATACC
Statistics
Matches: 188, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
25 24 0.13
27 164 0.87
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACGATTTTT
Found at i:31975285 original size:27 final size:27
Alignment explanation
Indices: 31975196--31975285 Score: 137
Period size: 27 Copynumber: 3.3 Consensus size: 27
31975186 CCTTATGTGA
*
31975196 TAAAATGATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
* *
31975223 TAAAATAACTGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
31975250 TAAAATGACCGAAATACCC-CTATAGGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
31975277 TAAAATGAC
1 TAAAATGAC
31975286 TATAATATCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCATAGGG
Found at i:31988794 original size:13 final size:13
Alignment explanation
Indices: 31988776--31988800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31988766 TAATGGTATA
31988776 TTGAATCCATGAC
1 TTGAATCCATGAC
31988789 TTGAATCCATGA
1 TTGAATCCATGA
31988801 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:31990290 original size:47 final size:47
Alignment explanation
Indices: 31990214--31990429 Score: 297
Period size: 47 Copynumber: 4.6 Consensus size: 47
31990204 TTAAACCCAT
31990214 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
31990263 ATGTGAAATTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
31990310 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*** * * * * * *
31990357 ATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAACGTGTTGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
31990404 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
31990430 TCCCGAAGGG
Statistics
Matches: 151, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
47 141 0.93
49 10 0.07
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:31990605 original size:38 final size:37
Alignment explanation
Indices: 31990548--31990626 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
31990538 CTGAGCTCTA
* *
31990548 AAGACCCGATGACTACGTGTGG-GAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-A-TTATGTCCGGGT
*
31990586 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
31990623 AAGA
1 AAGA
31990627 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 15 0.41
38 21 0.57
39 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:31993412 original size:17 final size:18
Alignment explanation
Indices: 31993390--31993423 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31993380 CACGTTGAAG
31993390 TGTTTT-ATTGAAAACCT
1 TGTTTTCATTGAAAACCT
31993407 TGTTTTCATTGAAAACC
1 TGTTTTCATTGAAAACC
31993424 CTTCCTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (18 bp):
TGTTTTCATTGAAAACCT
Found at i:31994540 original size:29 final size:29
Alignment explanation
Indices: 31994460--31994572 Score: 176
Period size: 29 Copynumber: 4.0 Consensus size: 29
31994450 ATACATGCAC
* * *
31994460 ATGGCCCACTAAGCCC-AATCTCATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
*
31994488 ATGGCCCATT-GGCCCAAATCACATTCGT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
31994516 ATGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
31994545 ATGGCCCATTAGGCCCAAATCACATTCA
1 ATGGCCCATTAGGCCCAAATCACATTCA
31994573 GATTCATGCT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
27 4 0.05
28 29 0.37
29 45 0.58
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTCAT
Found at i:31994551 original size:57 final size:57
Alignment explanation
Indices: 31994460--31994571 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
31994450 ATACATGCAC
*
31994460 ATGGCCCACTAAGCCCAATCTCATTCATATGGCCCATT-GGCCCAAATCACATTCGT
1 ATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACATTCGT
* *
31994516 ATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATCACATTC
1 ATGGCCCACTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCAAATCACATTC
31994572 AGATTCATGC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 14 0.27
57 21 0.41
58 16 0.31
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (57 bp):
ATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACATTCGT
Found at i:31996708 original size:22 final size:22
Alignment explanation
Indices: 31996655--31996708 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
31996645 ATGAACTCAA
*
31996655 TCATAAAACATTTCAATTTACT
1 TCATAAAACATTTCAATTTAAT
* **
31996677 TAATTTAACATTTC-ATTATAAT
1 TCATAAAACATTTCAATT-TAAT
31996699 TCATAAAACA
1 TCATAAAACA
31996709 AACATCTGCT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (22 bp):
TCATAAAACATTTCAATTTAAT
Found at i:32002396 original size:15 final size:17
Alignment explanation
Indices: 32002378--32002409 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
32002368 TAGCATATTT
32002378 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
32002393 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
32002410 CAAGTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:32005670 original size:27 final size:27
Alignment explanation
Indices: 32005640--32005818 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
32005630 ATATTGAGCC
* * *
32005640 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
32005667 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
32005694 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
32005722 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
32005749 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
32005776 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
32005803 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
32005819 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32005779 original size:82 final size:81
Alignment explanation
Indices: 32005661--32005816 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32005651 TGCTATATAA
* *
32005661 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32005726 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
32005743 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32005807 CACTTAGTGC
65 CACTTAGTGC
32005817 TATACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32006384 original size:13 final size:13
Alignment explanation
Indices: 32006366--32006390 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32006356 TACTAAATTT
32006366 TCATGGATTCAAG
1 TCATGGATTCAAG
32006379 TCATGGATTCAA
1 TCATGGATTCAA
32006391 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:32012158 original size:47 final size:47
Alignment explanation
Indices: 32012106--32012267 Score: 261
Period size: 47 Copynumber: 3.4 Consensus size: 47
32012096 GATAATTGTG
* *
32012106 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32012153 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32012200 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32012249 ATGTGAAAGTGTATATATG
1 ATGTGAAAGTATATATATG
32012268 CGAGAGTATT
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
47 61 0.58
49 45 0.42
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32012166 original size:49 final size:49
Alignment explanation
Indices: 32012106--32012266 Score: 276
Period size: 49 Copynumber: 3.4 Consensus size: 49
32012096 GATAATTGTG
*
32012106 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32012153 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32012200 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32012249 ATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATAT
32012267 GCGAGAGTAT
Statistics
Matches: 107, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
47 50 0.47
48 2 0.02
49 55 0.51
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32034937 original size:55 final size:55
Alignment explanation
Indices: 32034837--32034942 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
32034827 TAACTTTTAA
* * * * *
32034837 ACACGGCCATGGGACACGTCCGTATGGCCTGCCCGTGTTCAATACTGACTTTGGG
1 ACACGGCCATGGGACACGCCCGTATGACCTACCCGTGTCCAATACTAACTTTGGG
* * * * *
32034892 ACACGGCTATGGGACATGCCCGTGTGACCTACCTGTGTCCTATACTAACTT
1 ACACGGCCATGGGACACGCCCGTATGACCTACCCGTGTCCAATACTAACTT
32034943 AAAATTTTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 41 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.25
Consensus pattern (55 bp):
ACACGGCCATGGGACACGCCCGTATGACCTACCCGTGTCCAATACTAACTTTGGG
Found at i:32037440 original size:47 final size:47
Alignment explanation
Indices: 32037386--32037589 Score: 309
Period size: 47 Copynumber: 4.3 Consensus size: 47
32037376 CCCTTCGAGA
* *
32037386 CTTATCACATTTAAACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
* * * *
32037433 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
* * * *
32037480 CTTATCTCATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
32037527 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
32037574 CTTATCACATATATAC
1 CTTATCACATATATAC
32037590 TGTGACACCC
Statistics
Matches: 140, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 140 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:32040901 original size:47 final size:47
Alignment explanation
Indices: 32040832--32040999 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
32040822 AAGGGTTTGT
32040832 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32040879 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
32040926 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32040973 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32041000 TCTCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32043033 original size:40 final size:40
Alignment explanation
Indices: 32042978--32043196 Score: 375
Period size: 40 Copynumber: 5.5 Consensus size: 40
32042968 GAGAATTGAG
*
32042978 AGTGATATATCCGGGCTAAGCCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32043018 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
32043058 AGTGATATATCCGGGCTAAGTCCCAAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32043098 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
32043138 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
32043178 AGTAATATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
32043197 ACCTCGAAGA
Statistics
Matches: 170, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:32047298 original size:39 final size:40
Alignment explanation
Indices: 32047200--32047341 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
32047190 AATGATGTCT
*
32047200 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACCATATCC
*
32047240 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACCA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACCATA-TCC
* * *
32047280 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
*
32047319 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
32047342 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 33 0.38
40 44 0.50
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
Found at i:32047360 original size:79 final size:80
Alignment explanation
Indices: 32047200--32047347 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
32047190 AATGATGTCT
* **
32047200 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
32047265 CGAGATACCAATTCC
66 CGAGATACCAATTCC
* * * * *
32047280 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
32047342 AACGAG
64 AACGAG
32047348 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACCAATTCC
Found at i:32047635 original size:47 final size:47
Alignment explanation
Indices: 32047566--32047733 Score: 246
Period size: 47 Copynumber: 3.6 Consensus size: 47
32047556 AAGGGTTGGT
32047566 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32047613 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
32047660 AATGTGAAAGTTTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32047707 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32047734 TCCCGAAGGG
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 107 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32049318 original size:47 final size:47
Alignment explanation
Indices: 32049257--32049495 Score: 415
Period size: 47 Copynumber: 5.1 Consensus size: 47
32049247 TGTTACATAT
32049257 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
* * *
32049304 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
*
32049351 ACACTTTTACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
* * *
32049398 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
32049445 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
32049492 ACAC
1 ACAC
32049496 CTTGTACATC
Statistics
Matches: 178, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
Found at i:32049414 original size:94 final size:94
Alignment explanation
Indices: 32049253--32049495 Score: 477
Period size: 94 Copynumber: 2.6 Consensus size: 94
32049243 GGGGTGTTAC
32049253 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTC
32049318 ATCACATTGGCCATTCGGCCTTATCACAT
66 ATCACATTGGCCATTCGGCCTTATCACAT
*
32049347 ATATACACTTTTACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTC
32049412 ATCACATTGGCCATTCGGCCTTATCACAT
66 ATCACATTGGCCATTCGGCCTTATCACAT
32049441 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
32049496 CTTGTACATC
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 147 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACAT
Found at i:32057502 original size:56 final size:56
Alignment explanation
Indices: 32057416--32057578 Score: 220
Period size: 56 Copynumber: 2.9 Consensus size: 56
32057406 CATGGCATCG
* *
32057416 ATATATGTGTGCGAGTAAGACTACATTTAATACGTTGGCATCGATATGTGACTCTA
1 ATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGACTCCA
* * * * *
32057472 ATATATGTCTGCGAGTAAGACTATGTTTAATACATTGGCATCAATATGTGACTCCG
1 ATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGACTCCA
* * *
32057528 ATATATGTGTGTGAGTAAGACAACGTTTAATATAG-TGGCATCGATATGTGA
1 ATATATGTGTGCGAGTAAGACTACGTTTAATA-CGTTGGCATCGATATGTGA
32057579 TTACATGTAA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
56 92 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGACTCCA
Found at i:32058635 original size:17 final size:19
Alignment explanation
Indices: 32058593--32058636 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32058583 ATGAAATTTT
*
32058593 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
32058612 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
32058630 AA-TATTA
1 AATTATTA
32058637 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:32065743 original size:20 final size:20
Alignment explanation
Indices: 32065720--32065763 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
32065710 AGCTCTGTCT
32065720 AGCTCAATTCAGCTCATTTG
1 AGCTCAATTCAGCTCATTTG
** *
32065740 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAATTCAGCTCATTTG
32065760 AGCT
1 AGCT
32065764 AAATCAAGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
AGCTCAATTCAGCTCATTTG
Found at i:32065784 original size:21 final size:21
Alignment explanation
Indices: 32065760--32065805 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
32065750 AGCTCGTTTG
*
32065760 AGCTAAATCAAGCTTACTTTT
1 AGCTAAACCAAGCTTACTTTT
* *
32065781 AGCTCAACCGAGCTTACTTTT
1 AGCTAAACCAAGCTTACTTTT
32065802 AGCT
1 AGCT
32065806 CGTTCTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (21 bp):
AGCTAAACCAAGCTTACTTTT
Found at i:32067942 original size:12 final size:12
Alignment explanation
Indices: 32067910--32067943 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
32067900 CTCGAGAAAA
*
32067910 GATTCCTACTAT
1 GATTCCTATTAT
32067922 GATTCCTATTAT
1 GATTCCTATTAT
32067934 GATTCCTATT
1 GATTCCTATT
32067944 CACCAACAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.09, T:0.47
Consensus pattern (12 bp):
GATTCCTATTAT
Found at i:32071790 original size:50 final size:49
Alignment explanation
Indices: 32071582--32071857 Score: 184
Period size: 46 Copynumber: 5.8 Consensus size: 49
32071572 CGGCCACATT
* * *
32071582 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTA-TTG-AG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-ACTCGAAG
* * * * * * *
32071630 ACGAGTGCTAATGTAAGA-CATGTCTTGGACAT-GCATTAGCCTCG-AG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAAG
* * * * *
32071676 ACGTA-AGCTAGTATAAGA-CATGTTTGGGACAT-GCATC-GGCTACG-AG
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACT-CGAAG
* * * * *
32071722 AT--GTGTCAGTGTACGACCATGTCTGGGACATGGCATCAG-CATGGTTATG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGAC-TCG--AAG
* * *
32071771 -TGAGAGCTAGTGTAAGACCATGTCCGGGACATCGCATCAGACTCGAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAAG
*
32071819 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
32071858 GGCACTTTAC
Statistics
Matches: 175, Mismatches: 38, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
44 8 0.05
45 16 0.09
46 50 0.29
47 15 0.09
48 17 0.10
49 35 0.20
50 33 0.19
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAAG
Found at i:32073623 original size:10 final size:10
Alignment explanation
Indices: 32073608--32073653 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
32073598 CAAGCCCATC
32073608 CAGCTCGTTT
1 CAGCTCGTTT
*
32073618 CAGCTCATTT
1 CAGCTCGTTT
*
32073628 AAGCTCGTTT
1 CAGCTCGTTT
32073638 CAGCTCGTTT
1 CAGCTCGTTT
32073648 CAGCTC
1 CAGCTC
32073654 AACCGAGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.15, C:0.30, G:0.17, T:0.37
Consensus pattern (10 bp):
CAGCTCGTTT
Found at i:32075288 original size:42 final size:42
Alignment explanation
Indices: 32075242--32075328 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
32075232 CATTGCACTC
32075242 CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
1 CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
*
32075284 CTTTGTTAGTGCTACAATCTCGAACTCACTAAGCATTTTCTT
1 CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
32075326 CTT
1 CTT
32075329 AGACAGAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (42 bp):
CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
Found at i:32078522 original size:24 final size:24
Alignment explanation
Indices: 32078492--32078573 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
32078482 TGGCTATTCA
*
32078492 GAGCTTCCCGATATGGTTCTTTGT
1 GAGCTTCCCGAAATGGTTCTTTGT
* *
32078516 GAACTTCCCGACAA-GGTTCTTTAT
1 GAGCTTCCCGA-AATGGTTCTTTGT
* *
32078540 GAGCTTCCCGAAATGGCTCTGTGT
1 GAGCTTCCCGAAATGGTTCTTTGT
32078564 GAGCTTCCCG
1 GAGCTTCCCG
32078574 TTACAAGGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
23 2 0.04
24 46 0.94
25 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (24 bp):
GAGCTTCCCGAAATGGTTCTTTGT
Found at i:32089528 original size:50 final size:50
Alignment explanation
Indices: 32089470--32089798 Score: 297
Period size: 50 Copynumber: 6.8 Consensus size: 50
32089460 GTAATGTATG
* * *
32089470 ATGAGAGCTAGTGTAAAATCGTGTCTGGGACATGGCATCGGCCTCGAGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
* * *
32089520 ATGAGAGCTAGTGTAATACCATGTTTGGGACATGGCATCGG-CT--TGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
* * * * *
32089567 AT--GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGAT
* *
32089615 ATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGG-CT--TGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
* * * * * * * *
32089662 ATGTG-TC-AGCGTAAGACCATGTCTGGGGCATAGCATC-GCCACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGAGAT
* * * ** *
32089710 ATGAGAGCCATTGTAAGACCATGTCTGGGACATGGCATCAGTGTCGATAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
32089760 ATGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATC
32089799 AACTTTGATG
Statistics
Matches: 222, Mismatches: 42, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
44 1 0.00
45 59 0.27
46 1 0.00
47 11 0.05
48 9 0.04
49 3 0.01
50 137 0.62
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
Found at i:32089644 original size:95 final size:95
Alignment explanation
Indices: 32089491--32089798 Score: 404
Period size: 95 Copynumber: 3.2 Consensus size: 95
32089481 TGTAAAATCG
* * * * *
32089491 TGTCTGGGACATGGCATCGGC-CTCGAGATATGAGAGCTAGTGTAATACCATGTTTGGGACATGG
1 TGTCTGGGACATGGCATCGGCAC-CGATAGATGAGAGCTAATGTAAGACCATGTCTGGGACATGG
*
32089555 CATCGGCTTGATATGTGCCAGTGTAAGACCA
65 CATCGGCTTGATATGTGTCAGTGTAAGACCA
*
32089586 TGTCTAGGACATGGCATCGGCACCGATAGATGAGAGCTAATGTAAGACCATGTCTGGGACATGGC
1 TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAATGTAAGACCATGTCTGGGACATGGC
*
32089651 ATCGGCTTGATATGTGTCAGCGTAAGACCA
66 ATCGGCTTGATATGTGTCAGTGTAAGACCA
* * * * *
32089681 TGTCTGGGGCATAGCATCGCCACCGATAGATGAGAGCCATTGTAAGACCATGTCTGGGACATGGC
1 TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAATGTAAGACCATGTCTGGGACATGGC
* *
32089746 ATCAGTG-TCGATATATGAGAGTCAGTGTAAGACCA
66 ATC-G-GCTTG--ATAT--GTGTCAGTGTAAGACCA
32089781 TGTCTGGGACATGGCATC
1 TGTCTGGGACATGGCATC
32089799 AACTTTGATG
Statistics
Matches: 187, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
95 147 0.79
96 4 0.02
97 1 0.01
98 4 0.02
100 31 0.17
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (95 bp):
TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAATGTAAGACCATGTCTGGGACATGGC
ATCGGCTTGATATGTGTCAGTGTAAGACCA
Found at i:32092655 original size:39 final size:40
Alignment explanation
Indices: 32092593--32092847 Score: 369
Period size: 39 Copynumber: 6.5 Consensus size: 40
32092583 AAACCAAGTA
* * *
32092593 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
32092632 TCTTCGGGAC-TAGCCCGGTTATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32092671 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32092711 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32092750 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32092790 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32092829 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32092848 TTATCATCCG
Statistics
Matches: 199, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
38 4 0.02
39 110 0.55
40 85 0.43
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32092725 original size:79 final size:78
Alignment explanation
Indices: 32092593--32092847 Score: 354
Period size: 79 Copynumber: 3.2 Consensus size: 78
32092583 AAACCAAGTA
* * * *
32092593 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGTCTTCGGGAC-TAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGCCCGG-TATA
*
32092655 GTAACTCGGACAAATG
63 GTAACTCGCACAAATG
*
32092671 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG-TATAGT
32092736 AACTCGCACAAATG
65 AACTCGCACAAATG
* *
32092750 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTA-TAGT
* *
32092815 CACTAGCACAAATG
65 AACTCGCACAAATG
32092829 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32092848 TTATCATCCG
Statistics
Matches: 161, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
78 18 0.11
79 143 0.89
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTATAGTA
ACTCGCACAAATG
Found at i:32094798 original size:15 final size:16
Alignment explanation
Indices: 32094780--32094809 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32094770 AATTGTTTTA
32094780 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
32094795 TTACATAATTTCACT
1 TTACATAATTTCACT
32094810 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:32095075 original size:50 final size:50
Alignment explanation
Indices: 32095007--32095148 Score: 140
Period size: 50 Copynumber: 2.8 Consensus size: 50
32094997 GTAACTGAAG
* * * **
32095007 CTATCTGGTACGCATAGTAGCCTGCACTTATTACTACACGTGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAA
* *
32095057 CTATCTGGTACACGTAGTAGCCTACACTTAGTCCTACACACGTGACCTAAAA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCT--AA
* *** * * *
32095109 CCATCTTAAACACATAGTAGCCTGCACATAGTATTACACA
1 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACA
32095149 TGTGTTCTCA
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
50 41 0.55
52 33 0.45
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAA
Found at i:32097833 original size:8 final size:8
Alignment explanation
Indices: 32097820--32097937 Score: 74
Period size: 8 Copynumber: 15.0 Consensus size: 8
32097810 TTATGTTTAG
32097820 TATATTAT
1 TATATTAT
32097828 TATATTAT
1 TATATTAT
32097836 TATATTAT
1 TATATTAT
32097844 TATATTAT
1 TATATTAT
* *
32097852 TAAATAATAA
1 T--ATATTAT
*
32097862 AATATT-T
1 TATATTAT
*
32097869 TATGTT-T
1 TATATTAT
32097876 TA-ATTA-
1 TATATTAT
32097882 TAT-TATAT
1 TATAT-TAT
32097890 TATATTA-
1 TATATTAT
32097897 TAT-TATAT
1 TATAT-TAT
32097905 TATATTA-
1 TATATTAT
32097912 TAT-TATAT
1 TATAT-TAT
32097920 TATATTATAT
1 TATA-T-TAT
32097930 TATATTAT
1 TATATTAT
32097938 ATAAACTAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 28
0.71 0.06 0.23
Matches are distributed among these distances:
6 7 0.08
7 19 0.22
8 45 0.51
9 3 0.03
10 14 0.16
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (8 bp):
TATATTAT
Found at i:32097888 original size:5 final size:5
Alignment explanation
Indices: 32097878--32097939 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
32097868 TTATGTTTTA
32097878 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
32097928 ATTAT ATTAT AT
1 ATTAT ATTAT AT
32097940 AAACTAAAGA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Done.