Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 100 of 259
Found at i:32491247 original size:27 final size:27
Alignment explanation
Indices: 32491153--32491247 Score: 88
Period size: 27 Copynumber: 3.5 Consensus size: 27
32491143 GGTATTTTAG
* *
32491153 TAATTTTGTAAATCGAGGGTAAAACTG-
1 TAATTCTGTAAATCTAGGGTAAAAC-GA
* *
32491180 TAATTCTGTAAAT-TAAGGGAAAAATAGA
1 TAATTCTGTAAATCT-AGGGTAAAA-CGA
*
32491208 -AATTCTATAAATCTAGGGTAAAACGA
1 TAATTCTGTAAATCTAGGGTAAAACGA
*
32491234 TTATTCTGTAAATC
1 TAATTCTGTAAATC
32491248 GGGAGTACTT
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
26 2 0.04
27 51 0.94
28 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (27 bp):
TAATTCTGTAAATCTAGGGTAAAACGA
Found at i:32494355 original size:25 final size:25
Alignment explanation
Indices: 32494298--32494440 Score: 211
Period size: 25 Copynumber: 5.8 Consensus size: 25
32494288 CCTCTTTTAG
* * *
32494298 TAACTTGGGCAAAAGCCCTTTCT-A
1 TAACTGGGGCATAAGCCCTTTATCA
32494322 TAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTTATCA
*
32494347 TAACTGGGGCATAAGCCCTTCATCA
1 TAACTGGGGCATAAGCCCTTTATCA
32494372 TAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTTATCA
*
32494397 TAACTAGGGCATAAGCCCTTTA--A
1 TAACTGGGGCATAAGCCCTTTATCA
*
32494420 TAACTGGGGCATAAGGCCTTT
1 TAACTGGGGCATAAGCCCTTT
32494441 TGCACTTCCT
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
23 20 0.18
24 20 0.18
25 70 0.64
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
TAACTGGGGCATAAGCCCTTTATCA
Found at i:32494513 original size:9 final size:9
Alignment explanation
Indices: 32494499--32494555 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32494489 ATCTCATGTG
32494499 CATATCATA
1 CATATCATA
*
32494508 CATATCATGTG
1 CATATCA--TA
32494519 CATATCATA
1 CATATCATA
* *
32494528 CATGTCATGTG
1 CATATCA--TA
32494539 CATATCATA
1 CATATCATA
32494548 CATATCAT
1 CATATCAT
32494556 TTTATCAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32494515 original size:20 final size:20
Alignment explanation
Indices: 32494487--32494555 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
32494477 GCATTTATGA
*
32494487 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32494507 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
32494527 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32494547 ACATATCAT
1 ACATATCAT
32494556 TTTATCAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32494522 original size:11 final size:11
Alignment explanation
Indices: 32494492--32494546 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32494482 TATGAACATC
32494492 TCATGTGCATA
1 TCATGTGCATA
*
32494503 TCA--TACATA
1 TCATGTGCATA
32494512 TCATGTGCATA
1 TCATGTGCATA
* *
32494523 TCA--TACATG
1 TCATGTGCATA
32494532 TCATGTGCATA
1 TCATGTGCATA
32494543 TCAT
1 TCAT
32494547 ACATATCATT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:32494621 original size:25 final size:25
Alignment explanation
Indices: 32494593--32494640 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
32494583 ATATATAAAC
* *
32494593 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
32494618 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
32494641 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:32497240 original size:27 final size:26
Alignment explanation
Indices: 32497200--32497278 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
32497190 GCATGACTAG
* *
32497200 CAGAACAGATATTGTGAG-AGAGTCAC
1 CAGAATAGATATTGTG-GCAGAGCCAC
32497226 CAGATATAGATATTGTGGCAGAGCCAC
1 CAGA-ATAGATATTGTGGCAGAGCCAC
* * *
32497253 CAGAATAGATAATGTAGCAAAGCCAC
1 CAGAATAGATATTGTGGCAGAGCCAC
32497279 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGAATAGATATTGTGGCAGAGCCAC
Found at i:32497471 original size:22 final size:22
Alignment explanation
Indices: 32497437--32497496 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
32497427 GCAAATACGT
32497437 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACACAGCCAT-ATGTAGG
* *
32497459 TTGGCATAGAGCCATATGTAGG
1 TTGGCACACAGCCATATGTAGG
* *
32497481 TTGGCGCAAAGCCATA
1 TTGGCACACAGCCATA
32497497 ATCAGAAGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 2 0.06
22 30 0.94
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (22 bp):
TTGGCACACAGCCATATGTAGG
Found at i:32497905 original size:27 final size:27
Alignment explanation
Indices: 32497875--32498348 Score: 462
Period size: 27 Copynumber: 17.6 Consensus size: 27
32497865 TACCTCACGA
* *
32497875 GGGTATCTCGATAATTTTACCTTACAG
1 GGGTATTTCGATAATTCTACCTTACAG
* * *
32497902 GGGTATTTCAGCAT--TTGTACCCTACAA
1 GGGTATTTC-G-ATAATTCTACCTTACAG
* *
32497929 GGGTATTTCGGTAATTCTATCC-TATAG
1 GGGTATTTCGATAATTCTA-CCTTACAG
* *
32497956 GGGTATTT-TAGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCTTACAG
* *
32497983 GGGTATTTCTATAATTCTACCTTATAG
1 GGGTATTTCGATAATTCTACCTTACAG
* *
32498010 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCTTACAG
* *
32498037 TGGTATTTCGATAATTCTACCTTACAA
1 GGGTATTTCGATAATTCTACCTTACAG
*
32498064 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCTTACAG
* * * * *
32498091 GGCTATTTCGGTAATTCTATCTTATAA
1 GGGTATTTCGATAATTCTACCTTACAG
* * *
32498118 GAGTATTTC-AGTAATTCTACCCTATAG
1 GGGTATTTCGA-TAATTCTACCTTACAG
* * *
32498145 GGGTATTTTGGTAATTCTACCTTACAA
1 GGGTATTTCGATAATTCTACCTTACAG
*
32498172 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCTTACAG
*
32498199 TGGTATTTCCG-TAATTCTACCTTACAG
1 GGGTATTT-CGATAATTCTACCTTACAG
* *
32498226 GGGTATTTCGGTAATTTTACCTTACAG
1 GGGTATTTCGATAATTCTACCTTACAG
* *
32498253 GGGTGTTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCTTACAG
* *
32498280 GGGTATTTC-AGTAATTCTACCCTACAA
1 GGGTATTTCGA-TAATTCTACCTTACAG
* *
32498307 GGGTATTTCGGTAATTCTACATTACAG
1 GGGTATTTCGATAATTCTACCTTACAG
*
32498334 GGGTATTTCAATAAT
1 GGGTATTTCGATAAT
32498349 GCTAGCCTAT
Statistics
Matches: 368, Mismatches: 61, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.00
26 6 0.02
27 353 0.96
28 6 0.02
29 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCTTACAG
Found at i:32497944 original size:54 final size:54
Alignment explanation
Indices: 32497874--32498357 Score: 607
Period size: 54 Copynumber: 9.0 Consensus size: 54
32497864 TTACCTCACG
* * * * * *
32497874 AGGGTATCTCGATAATTTTACCTTACAGGGGTATTTCAGCATTTGTACCCTACA
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* *
32497928 AGGGTATTTCGGTAATTCTATCC-TATAGGGGTATTTTAGTAATTCTACCCTACA
1 AGGGTATTTCGGTAATTCTA-CCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* ** * *
32497982 GGGGTATTTCTATAATTCTACCTTATAGGGGTATTTCAATAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* *
32498035 AGTGGTATTTCGATAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTAC-
1 AG-GGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * * * *
32498089 AGGGCTATTTCGGTAATTCTATCTTATAAGAGTATTTCAGTAATTCTACCCTATA
1 AGGG-TATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * *
32498144 GGGGTATTTTGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * * *
32498197 AGTGGTATTTCCGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTACCTTACA
1 AG-GGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* *
32498252 GGGGTGTTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
* * * *
32498306 AGGGTATTTCGGTAATTCTACATTACAGGGGTATTTCAATAATGCTAGCCTA
1 AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTA
32498358 TAGATATGAG
Statistics
Matches: 375, Mismatches: 48, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
53 6 0.02
54 363 0.97
55 6 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACA
Found at i:32500151 original size:18 final size:18
Alignment explanation
Indices: 32500110--32500165 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
32500100 CTTAGCCCAT
* *
32500110 TACAGTAACAGTAAACAA
1 TACAGTAACAGTAAATAG
* *
32500128 TGCAGTAACAGTAATTAG
1 TACAGTAACAGTAAATAG
*
32500146 TACAGTAACAGTAAGTAG
1 TACAGTAACAGTAAATAG
32500164 TA
1 TA
32500166 TGCAAGTCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.23
Consensus pattern (18 bp):
TACAGTAACAGTAAATAG
Found at i:32500527 original size:27 final size:27
Alignment explanation
Indices: 32500495--32500709 Score: 227
Period size: 27 Copynumber: 8.0 Consensus size: 27
32500485 AAATATACAT
* **
32500495 CACATAAGGGCAAAACAGTTATCCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
32500522 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
32500549 CTCATAAGGGCAAAACCGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
32500576 CACGTAAGGGCAAAACCGTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
32500603 CACATAAGGG-AAAAGTAGTCATTTTGC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* * *
32500630 CACATAAGGGAAAAACTGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
32500657 CACATAAGGGCAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* * * *
32500684 TACATAATGGAAAAACAATCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
32500710 ACTTATAGGG
Statistics
Matches: 159, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.04
27 148 0.93
28 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:32500636 original size:81 final size:80
Alignment explanation
Indices: 32500495--32500697 Score: 253
Period size: 81 Copynumber: 2.5 Consensus size: 80
32500485 AAATATACAT
* * ** * * *
32500495 CACATAAGGGCAAAACAGTTATCCTACCACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGC
1 CACATAAGGGCAAAACCGTCATTTTAACACATAAGGG-AAAATAGTCATTTTACCACATAAGGGA
32500560 AAAACCGTCATTTTAC
65 AAAACCGTCATTTTAC
* *
32500576 CACGTAAGGGCAAAACCGTCATTTTAACACATAAGGGAAAAGTAGTCATTTTGCCACATAAGGGA
1 CACATAAGGGCAAAACCGTCATTTTAACACATAAGGGAAAA-TAGTCATTTTACCACATAAGGGA
* *
32500641 AAAACTGTCATTTTAT
65 AAAACCGTCATTTTAC
* * * *
32500657 CACATAAGGGCAAAATCATCATTTTAATACATAATGGAAAA
1 CACATAAGGGCAAAACCGTCATTTTAACACATAAGGGAAAA
32500698 ACAATCATTT
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 4 0.04
81 101 0.96
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (80 bp):
CACATAAGGGCAAAACCGTCATTTTAACACATAAGGGAAAATAGTCATTTTACCACATAAGGGAA
AAACCGTCATTTTAC
Found at i:32500790 original size:53 final size:54
Alignment explanation
Indices: 32500702--32500840 Score: 165
Period size: 53 Copynumber: 2.6 Consensus size: 54
32500692 GGAAAAACAA
* * **
32500702 TCATTTTAACTTATAGGGGTATTACAATCATTTTACCCTATAAGGGTATTAT-AG
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATT-TCAG
* **
32500756 TCATTTTACCTTAT-GGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTCAG
* * *
32500809 TCATATTACCCTATGGGGGTATTTCGGTCATT
1 TCATTTTACCTTATAGGGGTATTTCGGTCATT
32500841 ATTTCGTCCC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 43 0.59
54 29 0.40
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.42
Consensus pattern (54 bp):
TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTCAG
Found at i:32500832 original size:27 final size:27
Alignment explanation
Indices: 32500702--32500840 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
32500692 GGAAAAACAA
* * * * *
32500702 TCATTTTAACTTATAGGGGTATTACAA
1 TCATTTTACCCTATGGGGGTATTTCAG
**
32500729 TCATTTTACCCTATAAGGGTATTAT-AG
1 TCATTTTACCCTATGGGGGTATT-TCAG
* **
32500756 TCATTTTACCTTAT-GGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAG
32500782 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
32500809 TCATATTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
32500836 TCATT
1 TCATT
32500841 ATTTCGTCCC
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.01
26 21 0.22
27 73 0.77
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCAG
Found at i:32505508 original size:42 final size:43
Alignment explanation
Indices: 32505408--32505519 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
32505398 ATCGATATGT
* *
32505408 GATTACATGTAAGAACATGTCTGGGACATTAGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCATTGTATTGA
* *
32505451 GATTACGTGTAAGACCATGTTTGGGACATTGGCA-TGTTATT-A
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCATTG-TATTGA
* * *
32505493 GATTTCGTGTCAGACCCTGTCTGGGAC
1 GATTACGTGTAAGACCATGTCTGGGAC
32505520 GGAGGCATCG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTAGCATTGTATTGA
Found at i:32505527 original size:42 final size:43
Alignment explanation
Indices: 32505408--32505561 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 43
32505398 ATCGATATGT
* * *
32505408 GATTACATGTAAGAACATGTCTGGGACATTA-GCAT-TGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACA-GAGGCATGT-TATTGA
* **
32505451 GATTACGTGTAAGACCATGTTTGGGACATTGGCATGTTATT-A
1 GATTACGTGTAAGACCATGTCTGGGACAGAGGCATGTTATTGA
* * * * * *
32505493 GATTTCGTGTCAGACCCTGTCTGGGACGGAGGCATCGATA-TGT
1 GATTACGTGTAAGACCATGTCTGGGACAGAGGCAT-GTTATTGA
* * *
32505536 GATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
32505562 TATGTCATTG
Statistics
Matches: 88, Mismatches: 19, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
42 31 0.35
43 56 0.64
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACAGAGGCATGTTATTGA
Found at i:32509053 original size:37 final size:37
Alignment explanation
Indices: 32509003--32509076 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
32508993 TGTCGATGTC
*
32509003 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
32509040 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
32509077 TGTCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:32515448 original size:88 final size:88
Alignment explanation
Indices: 32515294--32515461 Score: 255
Period size: 88 Copynumber: 1.9 Consensus size: 88
32515284 TTTTGAAAGC
* * * *
32515294 TTACTTTGTGTGTGTTTGTATTATTTTATAGATCATCGAAGCTACCGGAAGATCGGGAATCGTCG
1 TTACTTTGTGTGTGTTTGCATTATTTTATAGATCATCGAAGCTACCGGAACATCGAGAATCATCG
32515359 AGGATCATCACCACAACATTATT
66 AGGATCATCACCACAACATTATT
* * * *
32515382 TTACTTTTTGTGTGTTTGCATTGTTTTATAGATCATCGAAGCTACCGGAACCTCGAGAATTATCG
1 TTACTTTGTGTGTGTTTGCATTATTTTATAGATCATCGAAGCTACCGGAACATCGAGAATCATCG
*
32515447 AGGATCATTACCACA
66 AGGATCATCACCACA
32515462 CTATCGAACT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 71 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (88 bp):
TTACTTTGTGTGTGTTTGCATTATTTTATAGATCATCGAAGCTACCGGAACATCGAGAATCATCG
AGGATCATCACCACAACATTATT
Found at i:32521015 original size:146 final size:140
Alignment explanation
Indices: 32520758--32521027 Score: 321
Period size: 146 Copynumber: 1.9 Consensus size: 140
32520748 TTGAGATGAA
* * * *
32520758 AGCTAGTGTAAGCCATGTCTGGGACATGCATCGGCCTCGTGACGTAAGCCAGTGTAAGATATGTC
1 AGCTAGTGTAAGCCATGTCTAGGACATGCATCAGCCTCGTGACGTAAGCCAGCGTAAGACATGTC
* * * * *
32520823 TGGGACATGCATCAGCTATGAAATGTGTCAGTGTAAGACCCTGTCTGGGACATGGCATCGGCACG
66 TGGGACATGAATCAACTATGAAATGAGCCAATGTAAGACCCTGTCTGGGACATGGCATCGGCACG
32520888 GATATGTGAG
131 GATATGTGAG
* ** *
32520898 AGCTAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCTCGATTTC-TATAGTCAGCGTAAGACC
1 AGCTAGTGTAAG-CCATGTCTAGGACAT-GCATCAGCCTCG-TGACGTA-AGCCAGCGTAAGA-C
32520962 ATGTCTGGGACATGGAATCAACT-TGATAAATGAGCCAATGTAAGACCAC-GTCTGGGACATGGC
61 ATGTCTGGGACAT-GAATCAACTATG--AAATGAGCCAATGTAAGACC-CTGTCTGGGACATGGC
32521025 ATC
122 ATC
32521028 AACATTATAC
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
140 12 0.11
141 14 0.13
142 12 0.11
143 13 0.12
144 15 0.14
145 7 0.06
146 34 0.31
147 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAGCCATGTCTAGGACATGCATCAGCCTCGTGACGTAAGCCAGCGTAAGACATGTC
TGGGACATGAATCAACTATGAAATGAGCCAATGTAAGACCCTGTCTGGGACATGGCATCGGCACG
GATATGTGAG
Found at i:32530552 original size:39 final size:39
Alignment explanation
Indices: 32530433--32530555 Score: 156
Period size: 39 Copynumber: 3.2 Consensus size: 39
32530423 GGACTTTAGC
* * * *
32530433 CCGGACATATTTCCAGCACGTAGCTTGTGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCTTGCGGACCTTAAGT
* * * *
32530472 CCAGTTATAATTCCAGCACATAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCTTGCGGACCTTAAGT
* *
32530511 CCGGATATAATTCCAACACATAGCTTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCTTGCGGACCTTAAGT
32530550 CCGGAT
1 CCGGAT
32530556 GAACATCACT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCTTGCGGACCTTAAGT
Found at i:32535677 original size:14 final size:14
Alignment explanation
Indices: 32535658--32535685 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32535648 CTTCAAGGAA
32535658 TGATAAATTAATAT
1 TGATAAATTAATAT
32535672 TGATAAATTAATAT
1 TGATAAATTAATAT
32535686 AAATTATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
TGATAAATTAATAT
Found at i:32541289 original size:42 final size:43
Alignment explanation
Indices: 32541180--32541367 Score: 188
Period size: 43 Copynumber: 4.4 Consensus size: 43
32541170 CCGAGATGAG
* *
32541180 ATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTATTGCA
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TA-TGCT
* *
32541223 ATTATGTGTAAGACCATATCTGGGACATTGGCATCATTATGCT
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATGCT
* * *
32541266 ATTACG-ATAAGACCATGTCTGGGACATTGGCATCGTTAT-AT
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATGCT
* * * *
32541307 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATG-T
1 -ATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATGCT
* *
32541350 GATAACATGTAAGACCAT
1 -ATTACGTGTAAGACCAT
32541368 ATTCGGGATA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 35 0.29
43 82 0.68
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATGCT
Found at i:32541331 original size:85 final size:84
Alignment explanation
Indices: 32541188--32541348 Score: 227
Period size: 85 Copynumber: 1.9 Consensus size: 84
32541178 AGATTACATG
* *
32541188 TAAGACCATGTCTGGGACATTGGCATTGTATTGCAATTATGTGTAAGACCATATCTGGGACATTG
1 TAAGACCATGTCTGGGACATTGGCATCGTATTG-AATTATGTGTAAGACCATATCTGGGACAGTG
*
32541253 GCATCATTATGCTATTACGA
65 GCATCAATATGCTATTACGA
* *
32541273 TAAGACCATGTCTGGGACATTGGCATCGTTATATG-ATT-TCGTGTAAGACCCTGTCTGGGACAG
1 TAAGACCATGTCTGGGACATTGGCATCG-TAT-TGAATTAT-GTGTAAGACCATATCTGGGACAG
32541336 TGGCATCAATATG
63 TGGCATCAATATG
32541349 TGATAACATG
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
84 1 0.01
85 62 0.91
86 3 0.04
87 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (84 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATTGAATTATGTGTAAGACCATATCTGGGACAGTGG
CATCAATATGCTATTACGA
Found at i:32548932 original size:14 final size:13
Alignment explanation
Indices: 32548913--32548943 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
32548903 AACGATAAAA
32548913 TTTCTTAACGAAAT
1 TTTCTTAACG-AAT
32548927 TTTCTTAACGAAT
1 TTTCTTAACGAAT
32548940 TTTC
1 TTTC
32548944 ACACCAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.48
Consensus pattern (13 bp):
TTTCTTAACGAAT
Found at i:32553859 original size:82 final size:82
Alignment explanation
Indices: 32553721--32553871 Score: 221
Period size: 82 Copynumber: 1.8 Consensus size: 82
32553711 TAGTAAATAT
* * * *
32553721 TAATTTTAATTGATATATAAATGTAACACTAATTAAATTATAATTAATTTAAAATAATATCTAAT
1 TAATTTTAATTGATATATAAATATAACACTAATTAAATTACAATTAATATAAAATAATATCTAAA
32553786 AATACTCCAATAAATTG
66 AATACTCCAATAAATTG
* * ** *
32553803 TAATTTTAATTTATATATAACTATAACACTAATTAAATTACAATTAATATCGAATAATATTTAAA
1 TAATTTTAATTGATATATAAATATAACACTAATTAAATTACAATTAATATAAAATAATATCTAAA
32553868 AATA
66 AATA
32553872 TTTAATCTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
82 60 1.00
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (82 bp):
TAATTTTAATTGATATATAAATATAACACTAATTAAATTACAATTAATATAAAATAATATCTAAA
AATACTCCAATAAATTG
Found at i:32559049 original size:14 final size:16
Alignment explanation
Indices: 32559015--32559048 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32559005 AGAAAAGTGA
32559015 AAAAGAGAGAGAAAAG
1 AAAAGAGAGAGAAAAG
*
32559031 AAAAGTGAGA-AAAAG
1 AAAAGAGAGAGAAAAG
32559046 AAA
1 AAA
32559049 GGAAAACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (16 bp):
AAAAGAGAGAGAAAAG
Found at i:32563693 original size:43 final size:44
Alignment explanation
Indices: 32563645--32563741 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 44
32563635 CCCACTTTTT
*
32563645 TATTTTCA-TTACTTTTAAAATGT-TATTTAATAA-ATTATAAAAA
1 TATTTT-ATTTACTTTTAAAATATATATTTAA-AATATTATAAAAA
* * *
32563688 TATTTTATTTATTTTTAAAATATATTTTTAAAATTTTATAAAAA
1 TATTTTATTTACTTTTAAAATATATATTTAAAATATTATAAAAA
*
32563732 TATATTATTT
1 TATTTTATTT
32563742 TATAGATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.02
43 21 0.46
44 24 0.52
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (44 bp):
TATTTTATTTACTTTTAAAATATATATTTAAAATATTATAAAAA
Found at i:32563713 original size:13 final size:13
Alignment explanation
Indices: 32563697--32563721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32563687 ATATTTTATT
32563697 TATTTTTAAAATA
1 TATTTTTAAAATA
32563710 TATTTTTAAAAT
1 TATTTTTAAAAT
32563722 TTTATAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTTTTAAAATA
Found at i:32563743 original size:26 final size:24
Alignment explanation
Indices: 32563704--32563756 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
32563694 ATTTATTTTT
32563704 AAAATATATTTTTA-AAATTTTATA
1 AAAATATATTTTTATAAATTTTA-A
*
32563728 AAAATATATTATTTTATAGATTTTAA
1 AAAATATA-T-TTTTATAAATTTTAA
32563754 AAA
1 AAA
32563757 TAAACACGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 8 0.32
25 1 0.04
26 9 0.36
27 7 0.28
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
AAAATATATTTTTATAAATTTTAA
Found at i:32564215 original size:16 final size:17
Alignment explanation
Indices: 32564177--32564214 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
32564167 TTAAACATTG
32564177 AAAAATATATTGTTTTC
1 AAAAATATATTGTTTTC
32564194 AAAAATATATAT-TTTTC
1 AAAAATATAT-TGTTTTC
32564211 AAAA
1 AAAA
32564215 TCATTTTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (17 bp):
AAAAATATATTGTTTTC
Found at i:32565521 original size:21 final size:22
Alignment explanation
Indices: 32565497--32565540 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
32565487 CCAAATTCTC
32565497 TCAAA-TT-TCTCTCAATTTTTG
1 TCAAAGTTGTCTCT-AATTTTTG
32565518 TCAAAGTTGTCTCTAATTTTTG
1 TCAAAGTTGTCTCTAATTTTTG
32565540 T
1 T
32565541 AAAAAAGCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.52
Consensus pattern (22 bp):
TCAAAGTTGTCTCTAATTTTTG
Found at i:32566694 original size:7 final size:7
Alignment explanation
Indices: 32566674--32566723 Score: 82
Period size: 7 Copynumber: 7.0 Consensus size: 7
32566664 CATAATAAAA
32566674 TAGTCATT
1 TAGT-ATT
*
32566682 TCGTATT
1 TAGTATT
32566689 TAGTATT
1 TAGTATT
32566696 TAGTATT
1 TAGTATT
32566703 TAGTATT
1 TAGTATT
32566710 TAGTATT
1 TAGTATT
32566717 TAGTATT
1 TAGTATT
32566724 ACCTATATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 37 0.93
8 3 0.08
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:32570624 original size:51 final size:50
Alignment explanation
Indices: 32570493--32570637 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 50
32570483 CACTTGTAGC
* * **
32570493 CAAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACTTGCGA
1 CAAAGTTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA
* *** *
32570543 CCAA-TTATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 CAAAGTTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA
* *
32570592 TCAAAGTTATCGGGTACGCATAGTAGCATGCACTTAGTACTACACA
1 -CAAAGTTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA
32570638 TGCGGCCAAT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
49 37 0.47
50 6 0.08
51 35 0.45
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
CAAAGTTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA
Found at i:32572318 original size:6 final size:6
Alignment explanation
Indices: 32572309--32572456 Score: 81
Period size: 6 Copynumber: 23.8 Consensus size: 6
32572299 TGTCAGAACT
* *
32572309 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * *
32572358 AGAATC AGAATT AG-GTGAC AGAATC AAAACC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC A-G-AATC
* * *
32572408 CGAATC AAAATC AGAATC A-ATATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC AGAATC AGAATC AGA-ATC A-G-AATC AGAATC -AGAATC AGAAT
32572457 GTGAATGCAA
Statistics
Matches: 107, Mismatches: 20, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
5 7 0.07
6 82 0.77
7 13 0.12
8 4 0.04
9 1 0.01
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:32572322 original size:18 final size:18
Alignment explanation
Indices: 32572309--32572456 Score: 81
Period size: 19 Copynumber: 7.9 Consensus size: 18
32572299 TGTCAGAACT
32572309 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATC
*
32572327 AGAATCAGAATCAGAATT
1 AGAATCAGAATCAGAATC
*
32572345 AG-GTGACAGAATCAGAATC
1 AGAAT--CAGAATCAGAATC
* *
32572364 AGAATTAG-GTGACAGAATC
1 AGAATCAGAAT--CAGAATC
* * *
32572383 AAAACCAGAATCAGTATC
1 AGAATCAGAATCAGAATC
* *
32572401 AGGTAA-CCGAATCAAAATC
1 A-G-AATCAGAATCAGAATC
32572420 AGAATCA-ATATCAGGTAA-C
1 AGAATCAGA-ATCA-G-AATC
*
32572439 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
32572457 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
17 5 0.05
18 36 0.37
19 45 0.46
20 11 0.11
21 1 0.01
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (18 bp):
AGAATCAGAATCAGAATC
Found at i:32572358 original size:31 final size:31
Alignment explanation
Indices: 32572354--32572456 Score: 136
Period size: 31 Copynumber: 3.3 Consensus size: 31
32572344 TAGGTGACAG
* *
32572354 AATCAGAATCAGAATTAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
* * *
32572385 AACCAGAATCAGTATCAGGTAACCGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
32572416 AATCAGAATCA-ATATCAGGTAACAGAATCAAA
1 AATCAGAATCAGA-ATCAGGTAACAGAATC-AA
32572448 AATCAGAAT
1 AATCAGAAT
32572457 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
31 51 0.82
32 11 0.18
ACGTcount: A:0.50, C:0.17, G:0.16, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:32572360 original size:25 final size:25
Alignment explanation
Indices: 32572326--32572393 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
32572316 GAATCAGAAT
32572326 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
32572351 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* *
32572376 CAGAATCAAAACCAGAAT
1 CAGAATCAGAATCAGAAT
32572394 CAGTATCAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:32572426 original size:25 final size:25
Alignment explanation
Indices: 32572311--32572396 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
32572301 TCAGAACTAG
*
32572311 AATCAGAATCA-G-AATCAGAATCAG
1 AATCAGAATCAGGTAA-CAGAATCAA
* * *
32572335 AATCAGAATTAGGTGACAGAATCAG
1 AATCAGAATCAGGTAACAGAATCAA
* *
32572360 AATCAGAATTAGGTGACAGAATCAA
1 AATCAGAATCAGGTAACAGAATCAA
*
32572385 AACCAGAATCAG
1 AATCAGAATCAG
32572397 TATCAGGTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
24 10 0.18
25 44 0.80
26 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (25 bp):
AATCAGAATCAGGTAACAGAATCAA
Found at i:32572623 original size:27 final size:26
Alignment explanation
Indices: 32572593--32572694 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
32572583 GCTCAGTTAT
* *
32572593 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
32572620 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
32572646 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
32572674 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
32572695 TTAACAAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:32572889 original size:22 final size:22
Alignment explanation
Indices: 32572864--32572917 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
32572854 TGGCACACAA
32572864 CCATAATCAGGTTGGA-ACAAAG
1 CCATAATCAGGTT-GACACAAAG
*
32572886 CCAT-ATGTAGGTTGACACAAAG
1 CCATAAT-CAGGTTGACACAAAG
32572908 CCATAATCAG
1 CCATAATCAG
32572918 AAGGCTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 4 0.15
22 21 0.78
23 2 0.07
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (22 bp):
CCATAATCAGGTTGACACAAAG
Found at i:32573363 original size:27 final size:27
Alignment explanation
Indices: 32573302--32573363 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
32573292 AGTCACTTGG
*
32573302 CCACAAGGGCAAAATAGTCATTTAACA
1 CCACAAGGGCAAAATAGTAATTTAACA
** * * *
32573329 CCTTAAGGGCAAAATGGTAATTTTACC
1 CCACAAGGGCAAAATAGTAATTTAACA
32573356 CCACAAGG
1 CCACAAGG
32573364 TATCTTGGTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.21
Consensus pattern (27 bp):
CCACAAGGGCAAAATAGTAATTTAACA
Found at i:32573401 original size:27 final size:27
Alignment explanation
Indices: 32573345--32573547 Score: 167
Period size: 27 Copynumber: 7.2 Consensus size: 27
32573335 GGGCAAAATG
* * * *
32573345 GTAATTTTACCCCACAA-GGTATCTTG
1 GTAATTCTACCCTACAAGGGTATTTTA
*
32573371 GTAATTCCACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTTA
*
32573398 GTAATTCTACTCTACAAGGGTATTTCGGTTATTA
1 GTAATTCTACCCTACAAGGGTA------TT-TTA
**
32573432 CGATAATTCTACCCTACAAGGGTATTTCG
1 -G-TAATTCTACCCTACAAGGGTATTTTA
* **
32573461 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTTA
* *
32573488 GTAATTCTACCCTACAGGGGTA-TTTC
1 GTAATTCTACCCTACAAGGGTATTTTA
* *
32573514 GATATTTCTACCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTTA
32573542 GTAATT
1 GTAATT
32573548 TTGTAAATCG
Statistics
Matches: 147, Mismatches: 18, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
26 17 0.12
27 97 0.66
28 4 0.03
29 1 0.01
30 2 0.01
33 2 0.01
34 3 0.02
35 1 0.01
36 20 0.14
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTTA
Found at i:32573503 original size:90 final size:89
Alignment explanation
Indices: 32573346--32573514 Score: 241
Period size: 90 Copynumber: 1.9 Consensus size: 89
32573336 GGCAAAATGG
* * *
32573346 TAATTTTACCCCACAAGGTATCTTGGTAATTCCACCCTACAAGGGTATTTTAGTAATTCTACTCT
1 TAATTCTACCCCACAAGGTATCTTGGTAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCT
32573411 ACAAGGGTATTTCGGTTATTACGA
66 ACAAGGGTATTTCGGTTATTACGA
* * * *
32573435 TAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 TAATTCTACCCCACAA-GGTATCTT-GGTAATTCCACCCTACAAGGGTATTTCAGTAATTCTACC
*
32573499 CTACAGGGGTATTTCG
64 CTACAAGGGTATTTCG
32573515 ATATTTCTAC
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
89 16 0.23
90 54 0.77
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (89 bp):
TAATTCTACCCCACAAGGTATCTTGGTAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGTTATTACGA
Found at i:32573627 original size:27 final size:27
Alignment explanation
Indices: 32573597--32573674 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
32573587 GGTACTTTGG
32573597 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * *
32573624 TAATTTTATAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
32573651 TAATTTAACAAATC-AGGGGTATTT
1 TAATTTTACAAGTCGA-GGGTATTT
32573675 TGGTAATCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:32573654 original size:81 final size:81
Alignment explanation
Indices: 32573531--32573688 Score: 183
Period size: 81 Copynumber: 2.0 Consensus size: 81
32573521 CTACCCTACA
* * * ** *
32573531 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT-GTAAATTAGGGGTACTTT
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAACAGTAATT-TAACAAATCAGGGGTACTTT
*
32573595 GGTAATTTTACAAGTCG
65 GGTAATCTTACAAGTCG
** *** *
32573612 AGGGTATTTCAATAATTTTATAGGTCGAGGGTATTTCAGTAATTTAACAAATCAGGGGTATTTTG
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAACAGTAATTTAACAAATCAGGGGTACTTTG
32573677 GTAATCTTACAA
66 GTAATCTTACAA
32573689 ACCAGGGGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
80 1 0.02
81 62 0.98
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.37
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAACAGTAATTTAACAAATCAGGGGTACTTTG
GTAATCTTACAAGTCG
Found at i:32573680 original size:27 final size:27
Alignment explanation
Indices: 32573639--32574035 Score: 463
Period size: 27 Copynumber: 14.7 Consensus size: 27
32573629 TTATAGGTCG
** * *
32573639 AGGGTATTTCAGTAATTTAACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
32573666 GGGGTATTTTGGTAATCTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
32573693 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
32573720 AGGGTATTTTAGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
32573747 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
32573774 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
32573801 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
32573828 AGGGTATTATAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
**
32573855 AGGGTATTTTTGGTAATTTTGTAAACCA
1 AGGGTA-TTTTGGTAATTTTACAAACCA
*
32573883 AGGGTATTTTAGTAATTTTACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
* * **
32573909 AGTGGTATTTTAGTGATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* **
32573937 AGGGTATTTTAGTAATTTTACAAACTG
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
32573964 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
32573991 AGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
32574018 AGGGTGTTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
32574036 GGTAAAGTAA
Statistics
Matches: 312, Mismatches: 55, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 285 0.91
28 25 0.08
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:32573698 original size:54 final size:54
Alignment explanation
Indices: 32573667--32574041 Score: 561
Period size: 54 Copynumber: 6.9 Consensus size: 54
32573657 AACAAATCAG
* * * *
32573667 GGGTATTTTGGTAATCTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
*
32573721 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
* * *
32573775 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
* *
32573829 GGGTATTATAGTAATTTTACAAACCAAGGGTATTTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTA-TTTTGGTAATTTTGTAAACCAA
* * *
32573884 GGGTATTTTAGTAATTTTACAAACCAGTGGTATTTTAGTGATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
**
32573938 GGGTATTTTAGTAATTTTACAAACTGGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
* * * * *
32573992 GGGTATTTTGGTAATTTTACAAACTAAGGGTGTTTTGGTAATTTGGTAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAA
32574042 GTAAAGTATT
Statistics
Matches: 291, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
54 242 0.83
55 49 0.17
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
Found at i:32573698 original size:81 final size:81
Alignment explanation
Indices: 32573579--32574015 Score: 286
Period size: 81 Copynumber: 5.4 Consensus size: 81
32573569 GTAATTCTGT
* * ** ** *
32573579 AAATTAGGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTATAGGTC-GAGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTCAATAATTTTATA-AACAAAGG
32573642 GTATTTCAGTAATTTAAC
64 GTATTTCAGTAATTTAAC
* ***
32573660 AAATCAGGGGTATTTTGGTAATCTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCAATAATTTTATAAACAAAGGGT
* *
32573725 ATTTTAGTAATTTTAC
66 ATTTCAGTAATTTAAC
** * *** * * *
32573741 AAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGG
1 AAATC-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCAATAATTTTATAAACAAAGGG
** * * *
32573805 TATTTTGGTGATTTTAT
65 TATTTCAGTAATTTAAC
* * * * * *** * *
32573822 AAACCAAGGGTATTATAGTAATTTTACAAACCAAGGGTATTTTTGGTAATTTTGTAAACCAAGGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTA-TTTCAATAATTTTATAAACAAAGGG
* *
32573887 TATTTTAGTAATTTTAC
65 TATTTCAGTAATTTAAC
* * * * ** * * * * ***
32573904 AAACCAGTGGTATTTTAGTGATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTGGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCAATAATTTTATAAACAAAGGGT
** ***
32573969 ATTTTGGTAATTTTGT
66 ATTTCAGTAATTTAAC
* *
32573985 AAACCAAGGGTATTTTGGTAATTTTACAAAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAAC
32574016 TAAGGGTGTT
Statistics
Matches: 296, Mismatches: 55, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
80 2 0.01
81 223 0.75
82 71 0.24
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCAATAATTTTATAAACAAAGGGT
ATTTCAGTAATTTAAC
Found at i:32575884 original size:47 final size:47
Alignment explanation
Indices: 32575806--32576290 Score: 736
Period size: 47 Copynumber: 10.2 Consensus size: 47
32575796 TCCTTCGGGA
* * * * * **
32575806 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
32575853 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
32575900 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
32575947 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
32575996 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
32576043 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
32576092 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
32576139 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
** *
32576188 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
32576235 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
32576282 CTTATCACA
1 CTTATCACA
32576291 ATTTAGAATT
Statistics
Matches: 402, Mismatches: 30, Indels: 12
0.91 0.07 0.03
Matches are distributed among these distances:
47 268 0.67
49 134 0.33
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:32576001 original size:96 final size:96
Alignment explanation
Indices: 32575806--32576290 Score: 780
Period size: 96 Copynumber: 5.1 Consensus size: 96
32575796 TCCTTCGGGA
** * * * * ** * *
32575806 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
32575869 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32575900 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
32575965 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32575996 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
32576061 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32576092 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
32576157 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
32576188 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
32576251 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
32576282 CTTATCACA
1 CTTATCACA
32576291 ATTTAGAATT
Statistics
Matches: 365, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 90 0.25
96 275 0.75
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32576023 original size:143 final size:141
Alignment explanation
Indices: 32575806--32576290 Score: 781
Period size: 143 Copynumber: 3.4 Consensus size: 141
32575796 TCCTTCGGGA
* * * * * * * *
32575806 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32575871 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
*
32575936 GGCCATTAAGC
131 GGCCATTAGGC
* * *
32575947 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
**
32576012 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--GCATATACACTTTCACATTCATCA
32576077 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
32576092 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32576157 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
32576222 TCGGCCATTAGGC
129 TCGGCCATTAGGC
32576235 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
32576291 ATTTAGAATT
Statistics
Matches: 317, Mismatches: 21, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
141 9 0.03
143 218 0.69
145 90 0.28
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:32581017 original size:125 final size:126
Alignment explanation
Indices: 32580774--32581080 Score: 485
Period size: 125 Copynumber: 2.5 Consensus size: 126
32580764 AGTCTAAGGC
* * * *
32580774 TTTT-TCAAATACTACTGTAGCAAAAGAGAGTCCACGTGGGAGCTTTTTTCCGCAATTTTGCTAA
1 TTTTATCAGATACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTAA
* *
32580838 CAGTGCATCCTTCTTGAAGCGTTTTTGACATTATTTGTTCAGAAACATCTTCTCAAATTTA
66 CAGTGCATCCTTCTTGAAGCGTTTTTGACATTATTTATTCAAAAACATCTTCTCAAATTTA
* *
32580899 TTTTATCAGATACTAC-ATAGTAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGA
1 TTTTATCAGATACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTAA
*
32580963 CAGTGCATCCTTCTTGAAGCGTTTTTGACATTATTTATTCAAAAACATCTTCTCAATTTTA
66 CAGTGCATCCTTCTTGAAGCGTTTTTGACATTATTTATTCAAAAACATCTTCTCAAATTTA
* * *
32581024 TTTTTTCTGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTCCGTAATT
1 TTTTATCAGATACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATT
32581081 AATAGTAAAT
Statistics
Matches: 167, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
125 132 0.79
126 35 0.21
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (126 bp):
TTTTATCAGATACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTAA
CAGTGCATCCTTCTTGAAGCGTTTTTGACATTATTTATTCAAAAACATCTTCTCAAATTTA
Found at i:32581542 original size:16 final size:16
Alignment explanation
Indices: 32581523--32581558 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32581513 TGAAAAAATA
32581523 CTAAAACACTAAAACC
1 CTAAAACACTAAAACC
* *
32581539 CTAAACCACTGAAACC
1 CTAAAACACTAAAACC
32581555 CTAA
1 CTAA
32581559 TCTTAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.33, G:0.03, T:0.14
Consensus pattern (16 bp):
CTAAAACACTAAAACC
Found at i:32581693 original size:165 final size:158
Alignment explanation
Indices: 32581106--32582015 Score: 1370
Period size: 157 Copynumber: 5.7 Consensus size: 158
32581096 TAATAAATCC
* * *
32581106 TAAAAAATCCTAAACCCTAATTTAATTAATTTTTTTTAATTTCATAGTTAATTTAATTAATTAAC
1 TAAAAAACCCTAAACCCTAATTTAATTGA-TTTTTTTATTTTCATAGTTAATTTAATTAATTAAC
32581171 CCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCT
65 CCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCT
*
32581236 AATCTTAAAACAATCAAAAACCTTAACCT
130 AATCTTAAAACAATCAAAAACCCTAACCT
**
32581265 TAAAAAACCCTAAACATTAATTTAATTGATTTTTTTTATTTTCATAGTTAATTTAATTAATTAAC
1 TAAAAAACCCTAAACCCTAATTTAATTGA-TTTTTTTATTTTCATAGTTAATTTAATTAATTAAC
*
32581330 CCTCAACTCTAATTAAATTAA-TTTT-CCTTAAAAAACACTAAAGCCCTAAACCACTAAAACCCT
65 CCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCT
*
32581393 AATCCTAAAACAATCAAAAACCCTAA-CT
130 AATCTTAAAACAATCAAAAACCCTAACCT
*
32581421 TAAAAAACCCTAAACCCTAATTTAATTGA-TTTTTTATTTTCATAGTTAATTTAATTTATTAACC
1 TAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
* *
32581485 CTCAACTCTAATTAAATTAATTTTTCCCTGAAAAAATACTAAAACACTAAAACCCTAAACCACTG
66 CTCAACTCTAATTAAATTAATTTTTCCCT-------TA-AAAAACACTAAAACCCTAAACCACTA
* * *
32581550 AAACCCTAATCTTAAAACAATCAAAAATCTTAATCT
123 AAACCCTAATCTTAAAACAATCAAAAACCCTAACCT
*
32581586 T-AAAAACCCTAAACCCTAATTTAATTGATTTTTTTAGTTTCATAGTTAATTTAATTAATTAACC
1 TAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
* * * *
32581650 ATCAACTCTAATTAAATTAATTTTTCCCTTAACAAACACTAAAACCCTAAACTATTAAAACCCTA
66 CTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTA
* *
32581715 ATCCTAAAACAATAAAAAACCCTAACCT
131 ATCTTAAAACAATCAAAAACCCTAACCT
*
32581743 TAAAAAATCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTTAAAATTA
1 TAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAA-TT--AATTA
* * *
32581808 ACCCTTAACTCTAATTAAATTAA-TTTTCCCTTAAAAAATACTAAAACCCTAAACCATTAAAACC
63 ACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACC
* *
32581872 CTAATCTTAAAATAATAAAAAACCCTAACCT
128 CTAATCTTAAAACAATCAAAAACCCTAACCT
* *
32581903 TAAAAAATCCTAAACCCTAATTTAATTGATTTTTTTAGTTTCATAGTTAATTTAATTAATTAACC
1 TAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
32581968 CTCAACTCTAA-TAAATTAATTTTTCCCTTAAAAATACA--AAAACCCTAA
66 CTCAACTCTAATTAAATTAATTTTTCCCTTAAAAA-ACACTAAAACCCTAA
32582016 TCTTAAAACA
Statistics
Matches: 691, Mismatches: 42, Indels: 39
0.90 0.05 0.05
Matches are distributed among these distances:
154 54 0.08
155 4 0.01
156 50 0.07
157 146 0.21
158 59 0.09
159 85 0.12
160 121 0.18
161 26 0.04
163 2 0.00
164 80 0.12
165 64 0.09
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (158 bp):
TAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
CTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTA
ATCTTAAAACAATCAAAAACCCTAACCT
Found at i:32582017 original size:140 final size:142
Alignment explanation
Indices: 32581866--32582172 Score: 485
Period size: 140 Copynumber: 2.2 Consensus size: 142
32581856 CTAAACCATT
* *
32581866 AAAACCCTAATCTTAAAATAATAAAAAACCCTAACCTT-AAAAAATCCTAAACCCTAATTTAATT
1 AAAACCCTAATCTTAAAACAATAAAAAACCCTAA-CTTAAAAAAACCCTAAACCCTAATTTAATT
*
32581930 GATTTTTTTAGTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAA-TAAATTAATTTTTCC
65 GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCC
*
32581994 CTTAA-AAATACA
130 CTTAATAAACACA
*
32582006 AAAACCCTAATCTTAAAACAATCAAAAACCCTAACTTAAAAAAACCCTAAACCCTAATTTAATTG
1 AAAACCCTAATCTTAAAACAATAAAAAACCCTAACTTAAAAAAACCCTAAACCCTAATTTAATTG
*
32582071 ATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTTCC
66 ATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCC
* *
32582136 TTAATAACCACT
131 TTAATAAACACA
* *
32582148 AAAACCCTAAACCTTAAAACCATAA
1 AAAACCCT-AATCTTAAAACAATAA
32582173 CCCTAAAGTA
Statistics
Matches: 152, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
139 3 0.02
140 105 0.69
141 19 0.12
142 12 0.08
143 13 0.09
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.35
Consensus pattern (142 bp):
AAAACCCTAATCTTAAAACAATAAAAAACCCTAACTTAAAAAAACCCTAAACCCTAATTTAATTG
ATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCC
TTAATAAACACA
Found at i:32582020 original size:23 final size:22
Alignment explanation
Indices: 32581997--32582048 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 22
32581987 TTTTTCCCTT
32581997 AAAAATACAAAAACCCTAATCTTA
1 AAAAAT-CAAAAACCCTAA-CTTA
32582021 AAACAATCAAAAACCCTAACTTA
1 AAA-AATCAAAAACCCTAACTTA
32582044 AAAAA
1 AAAAA
32582049 ACCCTAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 2 0.07
23 7 0.26
24 15 0.56
25 3 0.11
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAAATCAAAAACCCTAACTTA
Found at i:32582057 original size:23 final size:23
Alignment explanation
Indices: 32581994--32582067 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 23
32581984 TAATTTTTCC
*
32581994 CTTAAAAATA-CAAAAACCCTAA
1 CTTAAAAAAACCAAAAACCCTAA
* *
32582016 TCTTAAAACAATCAAAAACCCTAA
1 -CTTAAAAAAACCAAAAACCCTAA
**
32582040 CTTAAAAAAACCCTAAACCCTAA
1 CTTAAAAAAACCAAAAACCCTAA
*
32582063 TTTAA
1 CTTAA
32582068 TTGATTTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 31 0.72
24 12 0.28
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (23 bp):
CTTAAAAAAACCAAAAACCCTAA
Found at i:32583219 original size:15 final size:15
Alignment explanation
Indices: 32583201--32583233 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32583191 GATGTAATTA
*
32583201 TAAATTTTTATATTT
1 TAAATATTTATATTT
32583216 TAAATATTTATATTT
1 TAAATATTTATATTT
32583231 TAA
1 TAA
32583234 TATAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TAAATATTTATATTT
Found at i:32584411 original size:64 final size:64
Alignment explanation
Indices: 32584342--32584463 Score: 217
Period size: 64 Copynumber: 1.9 Consensus size: 64
32584332 CTAACTTCAA
* *
32584342 CAACACTATTGTTTTCAGCTAATCCATTTTGCAGGATGTCAACTAAAAGAGCATTATACTTTAG
1 CAACACTATTGTTTTCAGCTAATCCATTCTGCAGGAAGTCAACTAAAAGAGCATTATACTTTAG
*
32584406 CAACACTATTGTTTTCAGCTAATCCATTCTGTAGGAAGTCAACTAAAAGAGCATTATA
1 CAACACTATTGTTTTCAGCTAATCCATTCTGCAGGAAGTCAACTAAAAGAGCATTATA
32584464 ACTCTCCAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (64 bp):
CAACACTATTGTTTTCAGCTAATCCATTCTGCAGGAAGTCAACTAAAAGAGCATTATACTTTAG
Found at i:32590754 original size:18 final size:17
Alignment explanation
Indices: 32590733--32590791 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
32590723 AAATTAATCG
*
32590733 AATTAATCGAATTACCCA
1 AATTAA-CGAATTAACCA
* *
32590751 AATTACCGAAATTAACCG
1 AATTAACG-AATTAACCA
*
32590769 AATTAACTGAATTATCCA
1 AATTAAC-GAATTAACCA
32590787 AATTA
1 AATTA
32590792 TTTGTATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.46, C:0.19, G:0.07, T:0.29
Consensus pattern (17 bp):
AATTAACGAATTAACCA
Found at i:32590765 original size:36 final size:36
Alignment explanation
Indices: 32590723--32590791 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
32590713 AATAAGTATA
*
32590723 AAATTAATCGAATTAA-TCGAATTACCCAAATTACCG
1 AAATTAACCGAATTAACT-GAATTACCCAAATTACCG
*
32590759 AAATTAACCGAATTAACTGAATTATCCAAATTA
1 AAATTAACCGAATTAACTGAATTACCCAAATTA
32590792 TTTGTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (36 bp):
AAATTAACCGAATTAACTGAATTACCCAAATTACCG
Found at i:32590772 original size:9 final size:9
Alignment explanation
Indices: 32590724--32590782 Score: 57
Period size: 9 Copynumber: 6.6 Consensus size: 9
32590714 ATAAGTATAA
*
32590724 AATTAATCG
1 AATTAACCG
*
32590733 AATTAATCG
1 AATTAACCG
* *
32590742 AATTACCCA
1 AATTAACCG
32590751 AATT-ACCG
1 AATTAACCG
32590759 AAATTAACCG
1 -AATTAACCG
*
32590769 AATTAACTG
1 AATTAACCG
32590778 AATTA
1 AATTA
32590783 TCCAAATTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 36 0.86
10 4 0.10
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:32590822 original size:6 final size:6
Alignment explanation
Indices: 32590811--32590851 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
32590801 AATAATATGT
*
32590811 TTTTTA TTTTTA TTTTTA GTTTTTGA TTTTGA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTTT-A TTTTTA TTTTTA TTT
32590852 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 21 0.68
7 9 0.29
8 1 0.03
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:32590834 original size:20 final size:20
Alignment explanation
Indices: 32590809--32590848 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32590799 AAAATAATAT
* *
32590809 GTTTTTTATTTTTATTTTTA
1 GTTTTTGATTTTGATTTTTA
32590829 GTTTTTGATTTTGATTTTTA
1 GTTTTTGATTTTGATTTTTA
32590849 TTTATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.75
Consensus pattern (20 bp):
GTTTTTGATTTTGATTTTTA
Found at i:32590892 original size:13 final size:13
Alignment explanation
Indices: 32590876--32590900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32590866 AATTTTTATG
32590876 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
32590889 ATTGGGTTGGGT
1 ATTGGGTTGGGT
32590901 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:32590900 original size:18 final size:18
Alignment explanation
Indices: 32590877--32590914 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32590867 ATTTTTATGA
32590877 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
32590895 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
32590913 TT
1 TT
32590915 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:32592665 original size:31 final size:31
Alignment explanation
Indices: 32592630--32592705 Score: 152
Period size: 31 Copynumber: 2.5 Consensus size: 31
32592620 TTAATGACTC
32592630 AGTGACTAAAATGTTACAACACGATAATGTA
1 AGTGACTAAAATGTTACAACACGATAATGTA
32592661 AGTGACTAAAATGTTACAACACGATAATGTA
1 AGTGACTAAAATGTTACAACACGATAATGTA
32592692 AGTGACTAAAATGT
1 AGTGACTAAAATGT
32592706 AACCTGTGAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (31 bp):
AGTGACTAAAATGTTACAACACGATAATGTA
Found at i:32598498 original size:32 final size:32
Alignment explanation
Indices: 32598462--32598529 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
32598452 ATTCCCAATT
*
32598462 TTTTTCAAAAGTTAACCTAAATTTACCCTTGG
1 TTTTTCAAAAGTTAACCAAAATTTACCCTTGG
*
32598494 TTTTTCAAAAGTTAACCAAAATTTAGCCTTGG
1 TTTTTCAAAAGTTAACCAAAATTTACCCTTGG
32598526 TTTT
1 TTTT
32598530 ATTTTTTAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (32 bp):
TTTTTCAAAAGTTAACCAAAATTTACCCTTGG
Found at i:32600971 original size:16 final size:16
Alignment explanation
Indices: 32600950--32600989 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
32600940 GTTTTGGGTT
32600950 TTCTTTATGTTTTTTA
1 TTCTTTATGTTTTTTA
32600966 TTCTTTATGTTTTTTA
1 TTCTTTATGTTTTTTA
32600982 TTCTTTAT
1 TTCTTTAT
32600990 TATTCTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.75
Consensus pattern (16 bp):
TTCTTTATGTTTTTTA
Found at i:32603757 original size:45 final size:44
Alignment explanation
Indices: 32603668--32603786 Score: 161
Period size: 45 Copynumber: 2.7 Consensus size: 44
32603658 CTGACATTTC
* * *
32603668 GCCTGTTAGGCTCGAA-GCCCGATA-TCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCAATAGT-ATCTCACCGGCATTATA
32603711 GCCTGCTAGGCTCGAAGGCCCAAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGGCCC-AATAGTATCTCACCGGCATTATA
*
32603756 GCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 GCCTGCTAGGCTCGAAGGCCC-AATAGTATC
32603787 ACCGTACAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
43 15 0.22
44 4 0.06
45 48 0.71
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (44 bp):
GCCTGCTAGGCTCGAAGGCCCAATAGTATCTCACCGGCATTATA
Found at i:32611523 original size:85 final size:85
Alignment explanation
Indices: 32611380--32611558 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
32611370 GGCCGGCCAT
32611380 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
32611445 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32611465 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
32611530 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32611550 GGGCATGGG
1 GAGCATGGG
32611559 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:32613835 original size:47 final size:47
Alignment explanation
Indices: 32613771--32614087 Score: 454
Period size: 47 Copynumber: 6.6 Consensus size: 47
32613761 ACCCGTATAT
32613771 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * **
32613818 GTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACCTGTATATAT
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGC
*
32613871 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
32613918 GTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
32613965 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGCATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
32614012 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
32614059 ATATATGTGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
32614088 CGAAACGTGT
Statistics
Matches: 242, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
47 199 0.82
48 1 0.00
52 1 0.00
53 41 0.17
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:32613892 original size:100 final size:98
Alignment explanation
Indices: 32613746--32614087 Score: 502
Period size: 94 Copynumber: 3.6 Consensus size: 98
32613736 TTAGGATTTT
*
32613746 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
32613811 AACATGCGTATGTGTGATAAGGCCGAATGACCA
66 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
32613844 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAACCTG--TATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
*
32613909 TGAACATGCGTATGTGTGATAAGACCGAATGGCCA
64 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** *
32613944 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGCATGTG
1 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
32614005 AACATGCATATATGAGATAAGGCCGAATGGCCA
66 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
32614038 ATGTGATGAATGTGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATG
32614088 CGAAACGTGT
Statistics
Matches: 223, Mismatches: 16, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
94 103 0.46
95 1 0.00
96 7 0.03
97 1 0.00
98 19 0.09
99 1 0.00
100 91 0.41
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:32613927 original size:147 final size:141
Alignment explanation
Indices: 32613771--32614087 Score: 472
Period size: 147 Copynumber: 2.2 Consensus size: 141
32613761 ACCCGTATAT
*
32613771 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
* *
32613836 AATGACCAATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGT
66 AATGACCAATGTGATGAATGTGAA-C---ATACATATAT--GAGATAAGGCCGAATGGCCAATGT
*
32613901 GATGAATGTGAACATGC
125 GATGAATGTGAACATGA
* *
32613918 GTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
* * *
32613983 AATGGCCAATGTGATGCATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
66 AATGACCAATGTGATGAATGTGAACATACATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
32614048 TGTGAACATGA
131 TGTGAACATGA
* * *
32614059 ATATATGTGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
32614088 CGAAACGTGT
Statistics
Matches: 156, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 63 0.40
143 8 0.05
146 1 0.01
147 84 0.54
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (141 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
AATGACCAATGTGATGAATGTGAACATACATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
TGTGAACATGA
Found at i:32614150 original size:46 final size:46
Alignment explanation
Indices: 32614061--32614151 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
32614051 GAACATGAAT
* * * *
32614061 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
32614107 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
32614152 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:32614158 original size:141 final size:140
Alignment explanation
Indices: 32613746--32614136 Score: 392
Period size: 147 Copynumber: 2.7 Consensus size: 140
32613736 TTAGGATTTT
** * * *
32613746 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG-A-ATATA--TGTGATAAGACCGAATGGCCAATGCGA-GAACGTG
* * * * * **
32613811 AACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACCTGTATATATATATG
61 AACATGCATATGTGTGATAAAGCCAAATGGCCAATGTGATGCATGTGAA-C---ATGCATATAT-
*
32613876 CGTGATAAGGCCGAATGGCCA
121 -GAGATAAGGCCGAATGGCCA
** * * *
32613897 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGACCGAATGGCCAATGCGA-GAACGTGAACA
* *
32613962 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGCATGTGAACATGCATATATGAGATAAGG
65 TGCATATGTGTGATAAAGCCAAATGGCCAATGTGATGCATGTGAACATGCATATATGAGATAAGG
32614027 CCGAATGGCCA
130 CCGAATGGCCA
* * *
32614038 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGACCGAATGGCCAATGCGAGAACGTG-A--A
* * *
32614102 GATGGATATGTG-G-TAAAGCCAAATGGCTAATGTGA
63 CATGCATATGTGTGATAAAGCCAAATGGCCAATGTGA
32614137 GATATGTACG
Statistics
Matches: 212, Mismatches: 25, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
139 5 0.02
140 20 0.09
141 66 0.31
142 11 0.05
143 8 0.04
146 1 0.00
147 80 0.38
149 3 0.01
151 18 0.08
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGAATATATGTGATAAGACCGAATGGCCAATGCGAGAACGTGAACAT
GCATATGTGTGATAAAGCCAAATGGCCAATGTGATGCATGTGAACATGCATATATGAGATAAGGC
CGAATGGCCA
Found at i:32614478 original size:37 final size:37
Alignment explanation
Indices: 32614296--32614477 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
32614286 GGAAATATAT
32614296 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32614333 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32614370 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
32614407 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32614444 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
32614478 TCGTCTGAGC
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 137 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32616109 original size:40 final size:40
Alignment explanation
Indices: 32615746--32616097 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
32615736 GAGAATTGAG
*
32615746 AGTGATATATCCGGGCTAAGTCCCGAGGAGTATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
32615786 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
32615826 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGTT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32615866 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
32615906 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32615946 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
32615986 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
32616026 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
32616066 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
32616098 ATCATGCTGG
Statistics
Matches: 293, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 293 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:32618010 original size:85 final size:85
Alignment explanation
Indices: 32617867--32618045 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
32617857 GGCCGGCCAT
32617867 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
32617932 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32617952 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
32618017 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32618037 GGGCATGGG
1 GAGCATGGG
32618046 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:32620321 original size:47 final size:47
Alignment explanation
Indices: 32620257--32620573 Score: 445
Period size: 47 Copynumber: 6.6 Consensus size: 47
32620247 ACCCGTATAT
32620257 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * **
32620304 GTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACCTGTATAT
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C---ATGC
*
32620355 ATATATGCATGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTG--TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
32620404 GTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
32620451 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGCATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
32620498 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
32620545 ATATATGTGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
32620574 CGAAACGTGT
Statistics
Matches: 242, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
47 192 0.79
48 1 0.00
49 7 0.03
51 7 0.03
52 1 0.00
53 34 0.14
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:32620379 original size:100 final size:98
Alignment explanation
Indices: 32620232--32620573 Score: 493
Period size: 94 Copynumber: 3.6 Consensus size: 98
32620222 TTAGGATTTT
*
32620232 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
32620297 AACATGCGTATGTGTGATAAGGCCGAATGACCA
66 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
32620330 ATGTGATGAATGTGAACCTGTATATATATATGCATGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAACCTGTATATATATGTG--TGATAAGGCCGAATGGCCAATGTGATGAATG
*
32620395 TGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
64 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
32620430 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGCATGTG
1 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
32620491 AACATGCATATATGAGATAAGGCCGAATGGCCA
66 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
32620524 ATGTGATGAATGTGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATG
32620574 CGAAACGTGT
Statistics
Matches: 221, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
94 95 0.43
95 1 0.00
96 13 0.06
97 1 0.00
98 30 0.14
99 1 0.00
100 80 0.36
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (98 bp):
ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:32620409 original size:23 final size:23
Alignment explanation
Indices: 32620383--32620457 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
32620373 CGAATGGCCA
32620383 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* **
32620406 ATGTG-TGATAAGGCTG-A-ATGGCCA
1 ATGTGATG--AATG-TGAACAT-GCGT
32620430 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
32620453 ATGTG
1 ATGTG
32620458 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 4 0.10
23 18 0.46
24 13 0.33
25 4 0.10
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:32620412 original size:25 final size:25
Alignment explanation
Indices: 32620384--32620461 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
32620374 GAATGGCCAA
32620384 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * *
32620409 TGTGAT-AAGGCTG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
32620431 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
32620456 TGTGAT
1 TGTGAT
32620462 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.28, C:0.09, G:0.32, T:0.31
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:32620413 original size:147 final size:141
Alignment explanation
Indices: 32620257--32620573 Score: 490
Period size: 147 Copynumber: 2.2 Consensus size: 141
32620247 ACCCGTATAT
32620257 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
*
32620322 AATGACCAATGTGATGAATGTGAACCTGTATATATATATGCATGATAAGGCCGAATGGCCAATGT
66 AATGACCAATGTGATGAATGTGAA-C---ATACATATATG-A-GATAAGGCCGAATGGCCAATGT
*
32620387 GATGAATGTGAACATGC
125 GATGAATGTGAACATGA
* *
32620404 GTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
* * *
32620469 AATGGCCAATGTGATGCATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
66 AATGACCAATGTGATGAATGTGAACATACATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
32620534 TGTGAACATGA
131 TGTGAACATGA
* * *
32620545 ATATATGTGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
32620574 CGAAACGTGT
Statistics
Matches: 158, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
141 62 0.39
142 1 0.01
143 9 0.06
146 1 0.01
147 85 0.54
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
AATGACCAATGTGATGAATGTGAACATACATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
TGTGAACATGA
Found at i:32620636 original size:46 final size:46
Alignment explanation
Indices: 32620547--32620637 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
32620537 GAACATGAAT
* * * *
32620547 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
32620593 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
32620638 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:32620644 original size:141 final size:142
Alignment explanation
Indices: 32620232--32620622 Score: 416
Period size: 147 Copynumber: 2.7 Consensus size: 142
32620222 TTAGGATTTT
** * *
32620232 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG-A-ATATA--TGTGATAAGGCCGAATGGCCAATGCGA-GAACGTG
* * * * **
32620297 AACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACCTGTATATATATATG
61 AACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGCATGTGAA-C---ATGCATATATG
32620362 CATGATAAGGCCGAATGGCCA
122 CATGATAAGGCCGAATGGCCA
** * * * *
32620383 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* *
32620448 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGCATGTGAACATGCATATATG-A-GATAA
65 TGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGCATGTGAACATGCATATATGCATGATAA
32620511 GGCCGAATGGCCA
130 GGCCGAATGGCCA
* *
32620524 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--A
* *
32620588 GATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
63 CATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
32620623 GATATGTACG
Statistics
Matches: 214, Mismatches: 22, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
139 5 0.02
140 20 0.09
141 66 0.31
142 11 0.05
143 9 0.04
146 1 0.00
147 81 0.38
149 3 0.01
151 18 0.08
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (142 bp):
ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
GCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGCATGTGAACATGCATATATGCATGATAAG
GCCGAATGGCCA
Found at i:32620964 original size:37 final size:37
Alignment explanation
Indices: 32620782--32620963 Score: 301
Period size: 37 Copynumber: 4.9 Consensus size: 37
32620772 GGAAATATAT
32620782 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32620819 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32620856 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32620893 TCCGGGTAAGACCGGATGACTACGCGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32620930 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
32620964 TCGTCTGAGC
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32622936 original size:13 final size:13
Alignment explanation
Indices: 32622918--32622944 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32622908 GAAGTAATCG
32622918 CACACGGGCGTGT
1 CACACGGGCGTGT
32622931 CACACGGGCGTGT
1 CACACGGGCGTGT
32622944 C
1 C
32622945 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:32627924 original size:15 final size:16
Alignment explanation
Indices: 32627906--32627945 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
32627896 TTAAACTCGT
*
32627906 TTTATTTTTATTT-TC
1 TTTATTTTTATTTCTA
*
32627921 TTTACTTTTATTTCTA
1 TTTATTTTTATTTCTA
32627937 TTTATTTTT
1 TTTATTTTT
32627946 GAAGACTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTTTATTTCTA
Found at i:32628901 original size:2 final size:2
Alignment explanation
Indices: 32628894--32628920 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32628884 TTGTTCTAAA
32628894 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
32628921 TACATACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:32635860 original size:52 final size:52
Alignment explanation
Indices: 32635782--32635885 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
32635772 TCCAATTACA
*
32635782 TAGGTACCTAAATCAATTCATAACACATGATCACAAGACTATAACCACACCT
1 TAGGTACCTAAACCAATTCATAACACATGATCACAAGACTATAACCACACCT
32635834 TAGGTACCTAAACCAATTCATAACACATGATCACAAGACTATAACCACACCT
1 TAGGTACCTAAACCAATTCATAACACATGATCACAAGACTATAACCACACCT
32635886 AAAAGCAACC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.42, C:0.28, G:0.08, T:0.22
Consensus pattern (52 bp):
TAGGTACCTAAACCAATTCATAACACATGATCACAAGACTATAACCACACCT
Found at i:32635921 original size:34 final size:34
Alignment explanation
Indices: 32635881--32635966 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
32635871 ACTATAACCA
32635881 CACCTAAAAGCAACCAAAACATGCAAATTTGAAC
1 CACCTAAAAGCAACCAAAACATGCAAATTTGAAC
*
32635915 CACCTAAAAGCAACCAAAACATGCCAATTTGAAC
1 CACCTAAAAGCAACCAAAACATGCAAATTTGAAC
*
32635949 CACCTAAAACCAAACCAA
1 CACCTAAAAGC-AACCAA
32635967 GATGTCATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 43 0.88
35 6 0.12
ACGTcount: A:0.50, C:0.30, G:0.07, T:0.13
Consensus pattern (34 bp):
CACCTAAAAGCAACCAAAACATGCAAATTTGAAC
Found at i:32642538 original size:13 final size:13
Alignment explanation
Indices: 32642520--32642546 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32642510 AATTGAAGGT
32642520 TGTTATGAAATTA
1 TGTTATGAAATTA
32642533 TGTTATGAAATTA
1 TGTTATGAAATTA
32642546 T
1 T
32642547 AGGTATAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TGTTATGAAATTA
Found at i:32645407 original size:26 final size:26
Alignment explanation
Indices: 32645378--32645428 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
32645368 TAATGGACAT
*
32645378 AAATGGCCTTATTATATGTG-ATTTTA
1 AAATGG-CTTATTAAATGTGTATTTTA
*
32645404 AAATGGTTTATTAAATGTGTATTTT
1 AAATGGCTTATTAAATGTGTATTTT
32645429 GGTCATTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.31, C:0.04, G:0.16, T:0.49
Consensus pattern (26 bp):
AAATGGCTTATTAAATGTGTATTTTA
Found at i:32648186 original size:60 final size:60
Alignment explanation
Indices: 32648093--32648217 Score: 250
Period size: 60 Copynumber: 2.1 Consensus size: 60
32648083 ATGTGGTTGG
32648093 GAAAGAGGTTAGTACGAGGCGATACAGGTATGTACAGAACCTATTTGAGTATTAAATAGA
1 GAAAGAGGTTAGTACGAGGCGATACAGGTATGTACAGAACCTATTTGAGTATTAAATAGA
32648153 GAAAGAGGTTAGTACGAGGCGATACAGGTATGTACAGAACCTATTTGAGTATTAAATAGA
1 GAAAGAGGTTAGTACGAGGCGATACAGGTATGTACAGAACCTATTTGAGTATTAAATAGA
32648213 GAAAG
1 GAAAG
32648218 TTCAATGAGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (60 bp):
GAAAGAGGTTAGTACGAGGCGATACAGGTATGTACAGAACCTATTTGAGTATTAAATAGA
Found at i:32651164 original size:46 final size:47
Alignment explanation
Indices: 32651013--32651278 Score: 217
Period size: 46 Copynumber: 5.7 Consensus size: 47
32651003 GGTCACTTGT
* * * *
32651013 GTGAGCTAGTGTAAGA-CATATCTGGGACATGTATTGGCCA-C-ATTAT
1 GTGAGCTAGTGTAAGACCATGTCTGGGACATGCATTGG-CATCGA-GAC
* * * *
32651059 GAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATTGGCATAGAGAC
1 GTGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATTGGCATCGAGAC
* * * *
32651107 GAGCGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGTATCGAGAC
1 GTGAGCTAGTGTAAGACCATGTCTGGGACATGCATTGGCATCGAGAC
*
32651153 GTGAGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGC-TACGAGAT
1 GTGAGCTAGTGTAAGACCATGTCTGGGACATGCATTGGCAT-CGAGAC
* * * * * *
32651199 GTG-TC-AGTGTAAGACCATGTTTGGGACATGGCATCGACATAGATATAC
1 GTGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATTGGCATCG--AGAC
*
32651247 -TAGAGCTTGTGTAAGACCATGTCTGGGACATG
1 GT-GAGCTAGTGTAAGACCATGTCTGGGACATG
32651279 ATATCAGCAT
Statistics
Matches: 178, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
44 9 0.05
45 15 0.08
46 76 0.43
47 29 0.16
48 24 0.13
49 3 0.02
50 22 0.12
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
GTGAGCTAGTGTAAGACCATGTCTGGGACATGCATTGGCATCGAGAC
Found at i:32652405 original size:21 final size:20
Alignment explanation
Indices: 32652376--32652414 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32652366 TCTTAGTGAT
32652376 CACACGGGCATGTTGCCATTC
1 CACACGGGCATG-TGCCATTC
* *
32652397 CACATGGGCGTGTGCCAT
1 CACACGGGCATGTGCCAT
32652415 GTTTCAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.18, C:0.31, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGGGCATGTGCCATTC
Found at i:32656075 original size:28 final size:27
Alignment explanation
Indices: 32656012--32656163 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32656002 ATATTAAGTC
* * *
32656012 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32656039 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
32656067 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
32656094 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
32656122 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
32656149 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32656164 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32656096 original size:55 final size:55
Alignment explanation
Indices: 32656012--32656163 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32656002 ATATTAAGTC
* * *
32656012 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32656067 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32656122 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32656164 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32661141 original size:79 final size:77
Alignment explanation
Indices: 32660954--32661201 Score: 230
Period size: 79 Copynumber: 3.2 Consensus size: 77
32660944 CAATCATGTA
* * * ** * * * *
32660954 CCTTCGGGATTTAACCGGATATAGCTCCTCGTTCAAATG-CTTCGGGACATAGCCCGGTTTTAGT
1 CCTTCGGGACTTAACCGGATTTAG-TACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAAT
*
32661018 AACTCACACAATG
65 AACTCGCACAATG
* ** *
32661031 CCTTCGGGACATAACCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAAT
1 CCTTCGGGACTTAACCGGATTT-AGTACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAAT
32661096 AACTCGCACGAATG
65 AACTCGCAC-AATG
* * * * *
32661110 CCTTCGGGACTTAACCCGGATTTAGTTCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATATAT
1 CCTTCGGGACTTAA-CCGGATTTAGTACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAA
* * *
32661174 TCACTTAGCACAAAG
64 TAAC-TCGCACAATG
32661189 CCTTCGGGACTTA
1 CCTTCGGGACTTA
32661202 GCCCGGACAG
Statistics
Matches: 139, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
77 28 0.20
78 33 0.24
79 65 0.47
80 13 0.09
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (77 bp):
CCTTCGGGACTTAACCGGATTTAGTACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAATA
ACTCGCACAATG
Found at i:32661162 original size:39 final size:40
Alignment explanation
Indices: 32660989--32661208 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
32660979 TCCTCGTTCA
* * * * *
32660989 AATG-CTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32661027 AATGCCTTCGGGACATAA-CCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32661066 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32661106 AATGCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32661145 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32661185 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32661209 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
38 23 0.15
39 58 0.37
40 67 0.43
41 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32674280 original size:28 final size:27
Alignment explanation
Indices: 32674217--32674368 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32674207 ATATTAAGTC
* * *
32674217 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32674244 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
32674272 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
32674299 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
32674327 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
32674354 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32674369 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32674301 original size:55 final size:55
Alignment explanation
Indices: 32674217--32674368 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32674207 ATATTAAGTC
* * *
32674217 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32674272 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32674327 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32674369 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32677762 original size:43 final size:42
Alignment explanation
Indices: 32677699--32677785 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 42
32677689 ACATGTATCG
* * *
32677699 CATCCATTATGAACTTGGACCACTCAACGAGCTCGGATGCTCA
1 CATCCATAACGAACTCGGACCACTCAACGAGCTCGGATGC-CA
32677742 CATCCATAACGAACTCGGACCACTCAACGAGCTCGGATGCCA
1 CATCCATAACGAACTCGGACCACTCAACGAGCTCGGATGCCA
32677784 CA
1 CA
32677786 AATATCATGA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.10
43 37 0.90
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.18
Consensus pattern (42 bp):
CATCCATAACGAACTCGGACCACTCAACGAGCTCGGATGCCA
Found at i:32677776 original size:18 final size:18
Alignment explanation
Indices: 32677715--32677778 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 18
32677705 TTATGAACTT
32677715 GGACCACTCAACGAGCTC
1 GGACCACTCAACGAGCTC
*
32677733 GGATGCTCACATCCATAACGAACTC
1 GGA--C-CAC-T-C--AACGAGCTC
32677758 GGACCACTCAACGAGCTC
1 GGACCACTCAACGAGCTC
32677776 GGA
1 GGA
32677779 TGCCACAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
18 14 0.38
20 2 0.05
21 4 0.11
22 4 0.11
23 2 0.05
25 11 0.30
ACGTcount: A:0.30, C:0.34, G:0.22, T:0.14
Consensus pattern (18 bp):
GGACCACTCAACGAGCTC
Found at i:32684047 original size:47 final size:47
Alignment explanation
Indices: 32683994--32684414 Score: 626
Period size: 47 Copynumber: 9.0 Consensus size: 47
32683984 TTAGGATTTT
** *
32683994 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32684041 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
32684088 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
32684135 ATGTGATGAATGTGAGTATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32684182 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32684229 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32684276 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32684323 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
32684370 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
32684415 TAGTGTGAAA
Statistics
Matches: 335, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 335 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32684262 original size:25 final size:25
Alignment explanation
Indices: 32684228--32684307 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
32684218 CCGAATGGCC
32684228 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
* * *
32684253 TATGTGATG-AGGCCG-A-ATGGC-CA
1 TATGTGATGAATG-TGAACAT-GCATA
*
32684276 -ATGTGATGAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
32684300 TATGTGAT
1 TATGTGAT
32684308 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 8 0.20
25 17 0.41
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.30
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:32684378 original size:25 final size:25
Alignment explanation
Indices: 32684303--32684378 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
32684293 ATGCATATAT
32684303 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
32684328 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
32684350 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
32684375 GTGA
1 GTGA
32684379 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:32684627 original size:37 final size:37
Alignment explanation
Indices: 32684577--32684728 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
32684567 GGAAATATAT
* * *
32684577 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
32684614 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
32684651 CCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
32684688 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
32684725 TCCG
1 TCCG
32684729 AGCTAAAGGT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:32696400 original size:26 final size:26
Alignment explanation
Indices: 32696370--32696480 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
32696360 AGCATGGCTG
* * *
32696370 CCAGAACAGATAATGTGATAAAGTCA
1 CCAGAACAGATAATGTGGTAGAGCCA
32696396 CCAGAACAGATAATTGTGGTAGAGCCA
1 CCAGAACAGATAA-TGTGGTAGAGCCA
*
32696423 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGTAGAGCCA
* * *
32696450 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGTAGAGCCA
32696477 CCAG
1 CCAG
32696481 GACGTTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 13 0.17
27 61 0.80
28 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGTAGAGCCA
Found at i:32700826 original size:21 final size:21
Alignment explanation
Indices: 32700792--32700831 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32700782 AATGGTCATG
*
32700792 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
32700813 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
32700832 GTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:32701402 original size:28 final size:28
Alignment explanation
Indices: 32701337--32701432 Score: 122
Period size: 28 Copynumber: 3.5 Consensus size: 28
32701327 ATTGCATGAC
* * * *
32701337 TATGAGTGTGATTGGACCTGACGGG-CA
1 TATGAATGTGATTGGGCTTGATGGGCCA
*
32701364 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCTTGATGGGCCA
*
32701392 TATGAATGTGATTGGGCTCGATGGGCCA
1 TATGAATGTGATTGGGCTTGATGGGCCA
*
32701420 TATGAATGAGATT
1 TATGAATGTGATT
32701433 TGGTCTAAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
27 20 0.33
28 40 0.67
ACGTcount: A:0.25, C:0.11, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGCTTGATGGGCCA
Found at i:32701447 original size:29 final size:28
Alignment explanation
Indices: 32701362--32701454 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 28
32701352 ACCTGACGGG
* * ** *
32701362 CATATGAAAGTGATTGGGCTTGATGGGC
1 CATATGAATGAGATTGGGCTAAAGGGGC
* ** *
32701390 CATATGAATGTGATTGGGCTCGATGGGC
1 CATATGAATGAGATTGGGCTAAAGGGGC
*
32701418 CATATGAATGAGATTTGGTCTAAAGGGGC
1 CATATGAATGAGA-TTGGGCTAAAGGGGC
*
32701447 CAAATGAA
1 CATATGAA
32701455 CAAGTATGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 38 0.68
29 18 0.32
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.27
Consensus pattern (28 bp):
CATATGAATGAGATTGGGCTAAAGGGGC
Found at i:32707035 original size:15 final size:15
Alignment explanation
Indices: 32707016--32707056 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
32707006 ATGACAGAGG
*
32707016 AATCCAAGATAAAGA
1 AATCCAAGATAAAAA
* *
32707031 TATCCAAGGTAAAAA
1 AATCCAAGATAAAAA
32707046 AATCCAAGATA
1 AATCCAAGATA
32707057 CCATATCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAAA
Found at i:32718815 original size:21 final size:21
Alignment explanation
Indices: 32718789--32718828 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32718779 AATGGTCATG
*
32718789 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
32718810 GATGATTTACGAGTCACTT
1 GATGATTTAAGAGTCACTT
32718829 GTGTTTAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:32719373 original size:28 final size:28
Alignment explanation
Indices: 32719341--32719406 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
32719331 ACTATGAGTA
*
32719341 TGATTAGGCTTGACAAGCCATATGAAAG
1 TGATTGGGCTTGACAAGCCATATGAAAG
* *** *
32719369 TGATTGGGCCTGATGGGCCATATGAATG
1 TGATTGGGCTTGACAAGCCATATGAAAG
32719397 TGATTGGGCT
1 TGATTGGGCT
32719407 CGATGGGTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.29
Consensus pattern (28 bp):
TGATTGGGCTTGACAAGCCATATGAAAG
Found at i:32719411 original size:28 final size:29
Alignment explanation
Indices: 32719357--32719434 Score: 115
Period size: 28 Copynumber: 2.8 Consensus size: 29
32719347 GGCTTGACAA
*
32719357 GCCATATGAAAGTGATTGGGC-CTGATGG
1 GCCATATGAATGTGATTGGGCTCTGATGG
32719385 GCCATATGAATGTGATTGGGCTC-GATGG
1 GCCATATGAATGTGATTGGGCTCTGATGG
* *
32719413 GTCATATGAATGAGATTGGGCT
1 GCCATATGAATGTGATTGGGCT
32719435 TAAAGGGACC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 45 0.98
29 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.35, T:0.28
Consensus pattern (29 bp):
GCCATATGAATGTGATTGGGCTCTGATGG
Found at i:32720719 original size:17 final size:18
Alignment explanation
Indices: 32720686--32720719 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32720676 TTTAAAGAAG
32720686 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
32720704 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
32720720 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:32724898 original size:27 final size:27
Alignment explanation
Indices: 32724881--32725087 Score: 207
Period size: 27 Copynumber: 7.6 Consensus size: 27
32724871 ATATTAAGTC
32724881 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
32724908 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32724936 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32724963 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32724991 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32725018 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * * *
32725046 CGCACACTTAGTGTTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
32725073 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32725088 GCACAATTTA
Statistics
Matches: 171, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
27 92 0.54
28 79 0.46
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Done.