Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 101 of 259
Found at i:32724965 original size:55 final size:55
Alignment explanation
Indices: 32724881--32725112 Score: 356
Period size: 55 Copynumber: 4.2 Consensus size: 55
32724871 ATATTAAGTC
* * *
32724881 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32724936 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32724991 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
32725046 CGCACACTTAGTGTTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32725102 CGCACACTTAG
1 CGCACACTTAG
32725113 CGCCAATCTC
Statistics
Matches: 165, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
55 149 0.90
56 16 0.10
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32732961 original size:27 final size:27
Alignment explanation
Indices: 32732944--32733150 Score: 216
Period size: 27 Copynumber: 7.6 Consensus size: 27
32732934 ATATTAAGTC
32732944 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
32732971 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32732999 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32733026 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32733054 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
32733081 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
32733109 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
32733136 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32733151 GCACAATTTA
Statistics
Matches: 173, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
27 93 0.54
28 80 0.46
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32733028 original size:55 final size:55
Alignment explanation
Indices: 32732944--32733175 Score: 365
Period size: 55 Copynumber: 4.2 Consensus size: 55
32732934 ATATTAAGTC
* * *
32732944 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32732999 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32733054 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
32733109 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32733165 CGCACACTTAG
1 CGCACACTTAG
32733176 CGCCAATCTC
Statistics
Matches: 166, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
55 150 0.90
56 16 0.10
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32735774 original size:46 final size:44
Alignment explanation
Indices: 32735654--32735776 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 44
32735644 TATGAGAGCT
**
32735654 AGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATGTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGATGT-AACC
**
32735700 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTAACC
32735744 AGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
32735777 ACCTTACCCC
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
44 11 0.16
45 15 0.21
46 44 0.63
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAACC
Found at i:32737819 original size:27 final size:27
Alignment explanation
Indices: 32737780--32737884 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
32737770 GGAAGCGTCT
* *
32737780 TGGTTGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
32737807 TGGTGGCTCTGCCACATATT-TCTGTTC
1 TGGTGGCTCTGCCACA-ATTATCTGATC
*
32737834 TGGTGGCTCTACCACAATTATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
* *
32737862 TGGTGACTCTGTCAC-ATTATCTG
1 TGGTGGCTCTGCCACAATTATCTG
32737885 TTTTGGCAGC
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.04
27 47 0.70
28 17 0.25
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:32741158 original size:42 final size:43
Alignment explanation
Indices: 32741096--32741206 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 43
32741086 CGACTTATGA
*
32741096 ATTATGTGTAAGACCATGTCTGGGACA-TCGACATC-ATATTTG
1 ATTACGTGTAAGACCATGTCTGGGACAGT-GACATCGATATTTG
* * *
32741138 ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTG
1 ATTACGTGTAAGACCATGTCTGGGACAGTGACATCGATATTTG
* * *
32741181 ATTACATGTAAGACCACGTTTGGGAC
1 ATTACGTGTAAGACCATGTCTGGGAC
32741207 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 29 0.50
43 29 0.50
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACAGTGACATCGATATTTG
Found at i:32741213 original size:43 final size:43
Alignment explanation
Indices: 32741056--32741214 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
32741046 TATGTGTTTT
* *
32741056 CATGTAAGACCACGCCTGGGACGTTGGCATCGACT-TATGAATTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTG-ATTA
** * * * * *
32741100 TGTGTAAGACCATGTCTGGGACATCGACATC-ATATTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
*
32741142 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
32741185 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
32741215 TGTATAAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 29 0.32
43 38 0.41
44 25 0.27
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:32741869 original size:10 final size:10
Alignment explanation
Indices: 32741856--32741883 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
32741846 AAATGGTCAA
32741856 TTTTGGTAAG
1 TTTTGGTAAG
32741866 TTTTGGTAAG
1 TTTTGGTAAG
32741876 TTTTGGTA
1 TTTTGGTA
32741884 TGTGCATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.54
Consensus pattern (10 bp):
TTTTGGTAAG
Found at i:32747696 original size:14 final size:13
Alignment explanation
Indices: 32747677--32747716 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
32747667 GTAGTAGAAG
32747677 AAGAAGAAGAATAA
1 AAGAAGAAGAA-AA
32747691 AAGAAGAAGAAAA
1 AAGAAGAAGAAAA
*
32747704 AGGAGAGAAGAAA
1 AAGA-AGAAGAAA
32747717 TGGAGCAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.03
Consensus pattern (13 bp):
AAGAAGAAGAAAA
Found at i:32749610 original size:68 final size:67
Alignment explanation
Indices: 32749564--32749721 Score: 262
Period size: 68 Copynumber: 2.3 Consensus size: 67
32749554 ATACTATATA
32749564 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
32749629 AAT
65 AAT
* *
32749632 GTAGCTAGGTCATATGTGTGATACGGGATGTATCTCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
32749697 AAT
65 AAT
* *
32749700 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
32749722 TCCAAGTGAA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 85 1.00
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.25
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:32749795 original size:66 final size:67
Alignment explanation
Indices: 32749598--32749795 Score: 174
Period size: 68 Copynumber: 2.9 Consensus size: 67
32749588 GGGATGTATC
** * *
32749598 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCATATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
32749660 TGTATC-
62 AGGA-CA
* *
32749666 TCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
32749731 AGGACA
62 AGGACA
* *
32749737 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
32749796 TTCACCATGT
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 53 0.47
69 1 0.01
70 1 0.01
71 25 0.22
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:32753648 original size:46 final size:46
Alignment explanation
Indices: 32753591--32753719 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
32753581 TGTAACCTGC
* *
32753591 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
* * * *
32753637 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
* *
32753683 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGA
32753720 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
Found at i:32759934 original size:68 final size:68
Alignment explanation
Indices: 32759862--32760019 Score: 253
Period size: 68 Copynumber: 2.3 Consensus size: 68
32759852 ATTCTATATA
* * * *
32759862 GTAGCTAGGTCATATGTGTGATACGGGATGTATCCTATGTAGACAATAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAACTACGTGAGAGATA
32759927 AAT
66 AAT
*
32759930 GTAGCTAGGTTACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAACTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAACTACGTGAGAGATA
32759995 AAT
66 AAT
* *
32759998 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
32760020 TCCAAGTGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 82 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAACTACGTGAGAGATA
AAT
Found at i:32760093 original size:66 final size:67
Alignment explanation
Indices: 32759964--32760093 Score: 165
Period size: 66 Copynumber: 1.9 Consensus size: 67
32759954 GGGATGTATC
*
32759964 CCATGTAGACAAGAGAACTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAACTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
32760029 AGGACA
62 AGGACA
* * *
32760035 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAACTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
32760094 TCCACCATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.17
68 1 0.02
71 20 0.37
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAACTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:32762664 original size:18 final size:18
Alignment explanation
Indices: 32762641--32762677 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32762631 CGTTATGTCC
*
32762641 CTTAATTGGACCCTAAGG
1 CTTAATTAGACCCTAAGG
*
32762659 CTTAATTAGACCCTGAGG
1 CTTAATTAGACCCTAAGG
32762677 C
1 C
32762678 CCAATACGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (18 bp):
CTTAATTAGACCCTAAGG
Found at i:32768037 original size:31 final size:29
Alignment explanation
Indices: 32767947--32768042 Score: 95
Period size: 29 Copynumber: 3.2 Consensus size: 29
32767937 TTCGATAATG
*
32767947 TTAGTGACTATTTTGTTATTTTCTTC-AAGT
1 TTAGTGACTGTTTTGTTA-TTT-TTCAAAGT
* ** * *
32767977 CTAGTGACTGAGTTGTAAGTTTTCAAAGT
1 TTAGTGACTGTTTTGTTATTTTTCAAAGT
32768006 TTAGTGACTGTTTTGTTATTTTAATCAAAGT
1 TTAGTGACTGTTTTGTTATTTT--TCAAAGT
32768037 TTAGTG
1 TTAGTG
32768043 TCTATTGGTG
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
28 3 0.06
29 23 0.44
30 13 0.25
31 13 0.25
ACGTcount: A:0.24, C:0.08, G:0.19, T:0.49
Consensus pattern (29 bp):
TTAGTGACTGTTTTGTTATTTTTCAAAGT
Found at i:32768488 original size:43 final size:43
Alignment explanation
Indices: 32768355--32768504 Score: 219
Period size: 43 Copynumber: 3.5 Consensus size: 43
32768345 TTATTTTAAA
* *
32768355 AAACGCTGCTAAAGGTCATGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAGAGGTCATGACCTTTAGCGGTGCTTTTCCCAC
* *
32768398 AAACACCGCTAGAGGTCTTGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAGAGGTCATGACCTTTAGCGGTGCTTTTCCCAC
* *
32768441 AAACGCCGCTAGAGGTCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAGAGGTCATGACCTTTAGCGGTGCTTTTCCCAC
* * *
32768484 AAACGCCACTAAAAGTCATGA
1 AAACGCCGCTAGAGGTCATGA
32768505 AATTTTTAAG
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 95 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAGAGGTCATGACCTTTAGCGGTGCTTTTCCCAC
Found at i:32772964 original size:7 final size:7
Alignment explanation
Indices: 32772952--32772977 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32772942 TCATACACTT
32772952 TAAACCC
1 TAAACCC
32772959 TAAACCC
1 TAAACCC
32772966 TAAACCC
1 TAAACCC
32772973 TAAAC
1 TAAAC
32772978 TATAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:32773146 original size:7 final size:7
Alignment explanation
Indices: 32773135--32773172 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
32773125 CTGAACCATG
32773135 AACCCCT
1 AACCCCT
* *
32773142 CACCCTT
1 AACCCCT
32773149 AACCCCT
1 AACCCCT
32773156 AACCCCT
1 AACCCCT
32773163 AACCCCT
1 AACCCCT
32773170 AAC
1 AAC
32773173 ACTTAAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.55, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCCT
Found at i:32773459 original size:41 final size:40
Alignment explanation
Indices: 32773382--32773468 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
32773372 TCAAATACAT
32773382 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATA
* * * **
32773423 TTAAAACAATTATTAAAACAATAGACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
*
32773463 ATAAAA
1 TTAAAA
32773469 AGTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 8 0.20
41 32 0.80
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.23
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:32773723 original size:41 final size:41
Alignment explanation
Indices: 32773659--32773835 Score: 270
Period size: 41 Copynumber: 4.4 Consensus size: 41
32773649 ATTATATGAC
* *
32773659 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
32773700 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
32773741 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-GG-
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
32773780 TTTTAGCGGCGTTTTAACAAAAAACTCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGGT
32773821 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
32773836 TGGTAAAACA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
39 15 0.12
40 21 0.17
41 91 0.72
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:32773850 original size:80 final size:79
Alignment explanation
Indices: 32773659--32773863 Score: 234
Period size: 80 Copynumber: 2.5 Consensus size: 79
32773649 ATTATATGAC
* * * *
32773659 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTT-TAGAAAACGCCGCTAATGCTC-GG-TTTTAGCGGCGTTTTACAAAAAAC
32773724 GCCGCTAATGCTCTGGT
63 GCCGCTAATGCTCTGGT
*
32773741 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCGGTTTTAGCGGCGTTTTAACAAAAAAC
1 TTTTAGCGGCGTTTTTA-GAAAA-CGCCGCTAATGCTCGGTTTTAGCGGCGTTTT-ACAAAAAAC
* *
32773805 TCCGCTATTGCTCT-GT
63 GCCGCTAATGCTCTGGT
* * * *
32773821 TTTTAGCGGCGTTTTTGGTAAAACACCGCTATTGCTCCGTTTT
1 TTTTAGCGGCGTTTTTAG-AAAACGCCGCTAATGCTCGGTTTT
32773864 TTTATAATTT
Statistics
Matches: 106, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
80 46 0.43
81 35 0.33
82 25 0.24
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (79 bp):
TTTTAGCGGCGTTTTTAGAAAACGCCGCTAATGCTCGGTTTTAGCGGCGTTTTACAAAAAACGCC
GCTAATGCTCTGGT
Found at i:32773865 original size:41 final size:40
Alignment explanation
Indices: 32773659--32773864 Score: 213
Period size: 41 Copynumber: 5.1 Consensus size: 40
32773649 ATTATATGAC
* *
32773659 TTTTAGCGGCG-TTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTA-CCAAAACGCCGCTAATGCTCT-GT
32773700 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTACCAAAA-CGCCGCTAATGCTCT-GT
*
32773741 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTC-GG
1 TTTTAGCGGCGTTTTTACCAAAA-CGCCGCTAATGCTCTGT
* * * *
32773780 TTTTAGCGGCGTTTTAACAAAAAACTCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTTAC-CAAAACGCCGCTAATGCTCTGT
*** * * *
32773821 TTTTAGCGGCGTTTTTGGTAAAACACCGCTATTGCTCCGT
1 TTTTAGCGGCGTTTTTACCAAAACGCCGCTAATGCTCTGT
32773861 TTTT
1 TTTT
32773865 TTATAATTTT
Statistics
Matches: 147, Mismatches: 14, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
39 12 0.08
40 44 0.30
41 91 0.62
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTACCAAAACGCCGCTAATGCTCTGT
Found at i:32774276 original size:17 final size:18
Alignment explanation
Indices: 32774254--32774289 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
32774244 CTTGTGGATT
32774254 TAATGCTCTAAATC-AAA
1 TAATGCTCTAAATCTAAA
32774271 TAATGCTCTAAATCTAAA
1 TAATGCTCTAAATCTAAA
32774289 T
1 T
32774290 CTTTTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (18 bp):
TAATGCTCTAAATCTAAA
Found at i:32779252 original size:25 final size:25
Alignment explanation
Indices: 32779206--32779253 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32779196 TTATAATATG
* * *
32779206 AAAATGACCATTTTGCCGCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
32779231 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32779254 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:32779360 original size:20 final size:20
Alignment explanation
Indices: 32779290--32779360 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
32779280 ATTTTGATAA
*
32779290 ACACGATATGTATAATATGC
1 ACACGATATGTATGATATGC
* *
32779310 ACATGACATGTATGATATGC
1 ACACGATATGTATGATATGC
* *
32779330 ACATGATATGTCTGATATGC
1 ACACGATATGTATGATATGC
*
32779350 ACACGAGATGT
1 ACACGATATGT
32779361 TCATAAATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
ACACGATATGTATGATATGC
Found at i:32779461 original size:23 final size:24
Alignment explanation
Indices: 32779406--32779511 Score: 171
Period size: 24 Copynumber: 4.4 Consensus size: 24
32779396 GAGGAAGTGC
32779406 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32779430 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32779454 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32779477 AAAGAAGGGCTT-TGCCCCAGTTATT
1 -AA-AAGGGCTTATGCCCCAGTTATT
32779502 AAAAGAGGCT
1 AAAAG-GGCT
32779512 AGGCCTCTAG
Statistics
Matches: 78, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
23 26 0.33
24 30 0.38
25 14 0.18
26 8 0.10
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:32779476 original size:47 final size:48
Alignment explanation
Indices: 32779407--32779504 Score: 173
Period size: 47 Copynumber: 2.1 Consensus size: 48
32779397 AGGAAGTGCA
32779407 AAAGGGCTTATGCCCCAGTTATT-AA-AAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGAAGGGCTT-TGCCCCAGTTATT
32779454 AAAGGGCTTATGCCCCAGTTATTAAAGAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGAAGGGCTTTGCCCCAGTTATT
32779502 AAA
1 AAA
32779505 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 18 0.37
49 8 0.16
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGAAGGGCTTTGCCCCAGTTATT
Found at i:32779753 original size:31 final size:31
Alignment explanation
Indices: 32779718--32779781 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32779708 CGTTTACAGT
32779718 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32779749 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32779780 AA
1 AA
32779782 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32781324 original size:37 final size:37
Alignment explanation
Indices: 32781273--32781373 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
32781263 AATAGTCCCA
*
32781273 ACACGTAGTTATCGGGTCTTACCCGGACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
*
32781310 ACACGTAGTCATCGGGTCTTACCCGGATATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
32781347 ACACGTAGTCATCGGGTCTTACCCGGA
1 ACACGTAGTCATCGGGTCTTACCCGGA
32781374 ATATATTTCC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
Found at i:32781575 original size:48 final size:48
Alignment explanation
Indices: 32781514--32782614 Score: 932
Period size: 48 Copynumber: 22.8 Consensus size: 48
32781504 ATATACACAC
* * *
32781514 ATCTCCTACATATTTCACACTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32781562 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32781610 ATCTCACACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32781658 ATCTCATACATATTTCAAATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32781706 CTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32781754 ATCTCAT-TCATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32781802 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32781850 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* **
32781898 ATCTCAT-TCATACTTCACACTAGCCGCTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32781946 ATCTCAT-TCATACTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
32781994 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * ** * ** * * *
32782042 ATCTCATACATATTTCGGCTTTACCACATATACATATCTCGTA-CATATTTCACATT
1 ATCTCATATATATTTC-ACACTAGC-CAT-T-C--GGCT-TTACCACATAT-ACA-T
* *** * * * *
32782098 AGC-CAT-TCGGCTTTACCACACATA--CATATC-TC-ATA-CATATTTCACACT
1 ATCTCATAT-ATATTT--CACAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* *** ** * * * *
32782146 AGC-CAT-TCGGCTTT-ACCACATATACATATC-TCATT--CATATTTCACATT
1 ATCTCATAT-ATATTTCA-CAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* *** ** * * * *
32782194 AGC-CAT-TCGGCTTT-ACCACATATACATATC-TC-ATA-CATATTTCACATT
1 ATCTCATAT-ATATTTCA-CAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* *** ** * *
32782242 AGC-CAT-TCGGCTTT-ACCACATATACATATC-TCATT--CACATATACAT
1 ATCTCATAT-ATATTTCA-CAC-TAGCCAT-TCGGCTTTACCACATATACAT
* *
32782288 ATCTCAT-TCATACTTCACACTGGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32782336 ATCTCAT-TCGTATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32782384 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
32782432 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32782480 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
32782528 TTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32782576 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCA
32782615 TACACATATA
Statistics
Matches: 945, Mismatches: 79, Indels: 58
0.87 0.07 0.05
Matches are distributed among these distances:
45 3 0.00
46 16 0.02
47 14 0.01
48 867 0.92
49 7 0.01
50 5 0.01
51 1 0.00
52 1 0.00
53 1 0.00
54 12 0.01
55 11 0.01
56 4 0.00
57 3 0.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:32781621 original size:96 final size:96
Alignment explanation
Indices: 32781514--32782275 Score: 1208
Period size: 96 Copynumber: 8.1 Consensus size: 96
32781504 ATATACACAC
* * * *
32781514 ATCTCCTACATATTTCACACTAGTCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32781579 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
32781610 ATCTCACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
32781675 AATTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * * *
32781706 CTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAACATATCTCATTCATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32781771 CACTAGCCATTCGACTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
32781802 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32781867 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * * ** * *
32781898 ATCTCATTCATACTTCACACTAGCCGCTCGGCTTTACCACATATACATATCTCATTCATACTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32781963 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
32781994 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATAC--A--T--
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32782053 -A-T-----TTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
32782077 ATCTCGTACATATTTCACATTAGCCATTCGGCTTTACCACACATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32782142 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
32782173 ATCTCATTCATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32782238 CATTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
32782269 ATCTCAT
1 ATCTCAT
32782276 TCACATATAC
Statistics
Matches: 611, Mismatches: 42, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
83 76 0.12
85 1 0.00
87 1 0.00
88 1 0.00
89 1 0.00
90 1 0.00
91 1 0.00
92 1 0.00
94 1 0.00
96 527 0.86
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:32781686 original size:144 final size:144
Alignment explanation
Indices: 32781514--32782275 Score: 1226
Period size: 144 Copynumber: 5.4 Consensus size: 144
32781504 ATATACACAC
* * * *
32781514 ATCTCCTACATATTTCACACTAGTCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
** *
32781579 CACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
32781644 TACCACATATACAT
131 TACCACATATACAT
* *
32781658 ATCTCATACATATTTCAAATTAGCCATTCGGCTTTACCACATATACATCTCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
32781723 CACTAGCCATTCGGCTTTACCACATAAACATATCTCATTCATATTTCACACTAGCCATTCGACTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
32781788 TACCACATATACAT
131 TACCACATATACAT
*
32781802 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* **
32781867 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATACTTCACACTAGCCGCTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
32781932 TACCACATATACAT
131 TACCACATATACAT
* * *
32781946 ATCTCATTCATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
32782011 CAGTAGCCATTCGGCTTTACCACATATACATA--TC--TC--A--T-ACA-TA---TTTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
32782063 TACCACATATACAT
131 TACCACATATACAT
* *
32782077 ATCTCGTACATATTTCACATTAGCCATTCGGCTTTACCACACATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32782142 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
32782207 TACCACATATACAT
131 TACCACATATACAT
32782221 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
32782276 TCACATATAC
Statistics
Matches: 570, Mismatches: 35, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
131 112 0.20
133 2 0.00
134 2 0.00
135 5 0.01
136 1 0.00
137 1 0.00
138 1 0.00
139 1 0.00
140 5 0.01
141 2 0.00
142 2 0.00
144 436 0.76
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (144 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
TACCACATATACAT
Found at i:32782062 original size:35 final size:35
Alignment explanation
Indices: 32782020--32782092 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
32782010 ACAGTAGCCA
32782020 TTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCGGCTTTACCACATATACATATCTCATACATAT
*
32782055 TTCGGCTTTACCACATATACATATCTCGTACATAT
1 TTCGGCTTTACCACATATACATATCTCATACATAT
32782090 TTC
1 TTC
32782093 ACATTAGCCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (35 bp):
TTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:32782110 original size:179 final size:179
Alignment explanation
Indices: 32781876--32782614 Score: 830
Period size: 211 Copynumber: 3.9 Consensus size: 179
32781866 ACACTAGCCA
* * *
32781876 TTCGGCTTTACCACATATACATATCTCATTCATACTTCACACTAGCCGCTCGGCTTTACCACATA
1 TTCGGCTTTACCACATATACATATCTCATACATACTTCACACTAGCCACTCGGCTTTACCACACA
*
32781941 TACATATCTCATTCATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
66 TACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
32782006 TTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
131 TTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * * *
32782055 TTCGGCTTTACCACATATACATATCTCGTACATATTTCACATTAGCCATTCGGCTTTACCACACA
1 TTCGGCTTTACCACATATACATATCTCATACATACTTCACACTAGCCACTCGGCTTTACCACACA
* *
32782120 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATA
66 TACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
*
32782185 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
131 TTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATAC--A--T---A-T
32782242 AGCCATTCGGCTTTACCACATATACATATCTCATTCACATATACATATCTCATTCATACTTCACA
1 -----TTCGGCTTTACCACATATACATATCTCA-T-AC--ATAC---T-TCA--C--AC-T---A
* * * * *
32782307 CTGGCCATTCGGCTTTACCACATATACATATCTCATTCGTATTTCACACTAGCCATTCGGCTTTA
45 ---GCCACTCGGCTTTACCACACATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTA
* *
32782372 CCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC
107 CCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTC
32782437 ATACATATTTCACATT
172 ATAC--A--T---A-T
* * * *
32782453 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACC
1 -----TTCGGCTTTACCACATATACATATCTCATACATACTTCACACTAGCCACTCGGCTTTACC
* * *
32782518 ACATATACATTTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
61 ACACATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* *
32782583 ATATATTTCACATTAGCCATTCGGCTTTACCA
126 ACATATTTCACAGTAGCCATTCGGCTTTACCA
32782615 TACACATATA
Statistics
Matches: 501, Mismatches: 27, Indels: 51
0.87 0.05 0.09
Matches are distributed among these distances:
179 164 0.33
181 1 0.00
183 1 0.00
186 1 0.00
187 1 0.00
192 135 0.27
193 1 0.00
194 2 0.00
195 1 0.00
196 3 0.01
198 1 0.00
199 2 0.00
200 3 0.01
201 1 0.00
202 1 0.00
203 3 0.01
204 2 0.00
205 1 0.00
207 3 0.01
208 1 0.00
209 2 0.00
210 1 0.00
211 170 0.34
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (179 bp):
TTCGGCTTTACCACATATACATATCTCATACATACTTCACACTAGCCACTCGGCTTTACCACACA
TACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
TTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:32782111 original size:83 final size:83
Alignment explanation
Indices: 32781972--32782140 Score: 311
Period size: 83 Copynumber: 2.0 Consensus size: 83
32781962 ACACTAGCCA
*
32781972 TTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATA
1 TTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACACA
32782037 TACATATCTCATACATAT
66 TACATATCTCATACATAT
* *
32782055 TTCGGCTTTACCACATATACATATCTCGTACATATTTCACATTAGCCATTCGGCTTTACCACACA
1 TTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACACA
32782120 TACATATCTCATACATAT
66 TACATATCTCATACATAT
32782138 TTC
1 TTC
32782141 ACACTAGCCA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (83 bp):
TTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACACA
TACATATCTCATACATAT
Found at i:32782282 original size:19 final size:19
Alignment explanation
Indices: 32782258--32782297 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
32782248 TCGGCTTTAC
32782258 CACATATACATATCTCATT
1 CACATATACATATCTCATT
32782277 CACATATACATATCTCATT
1 CACATATACATATCTCATT
32782296 CA
1 CA
32782298 TACTTCACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (19 bp):
CACATATACATATCTCATT
Found at i:32782283 original size:67 final size:67
Alignment explanation
Indices: 32782210--32782344 Score: 234
Period size: 67 Copynumber: 2.0 Consensus size: 67
32782200 TCGGCTTTAC
* *
32782210 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
32782275 TT
66 TT
* *
32782277 CACATATACATATCTCATTCATACTTCACACTGGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
32782342 TT
66 TT
32782344 C
1 C
32782345 GTATTTCACA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (67 bp):
CACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
TT
Found at i:32782293 original size:115 final size:115
Alignment explanation
Indices: 32782162--32782390 Score: 404
Period size: 115 Copynumber: 2.0 Consensus size: 115
32782152 TCGGCTTTAC
* *
32782162 CACATATACATATCTCATTCATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATTCATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32782227 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATT
66 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
*
32782277 CACATATACATATCTCATTCATACTTCACACTGGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATTCATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32782342 TTCGTATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
66 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
32782391 ATATATTTCA
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 108 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (115 bp):
CACATATACATATCTCATTCATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
Found at i:32782307 original size:163 final size:163
Alignment explanation
Indices: 32782114--32782438 Score: 578
Period size: 163 Copynumber: 2.0 Consensus size: 163
32782104 TCGGCTTTAC
*
32782114 CACACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACACATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32782179 TTCATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
66 TTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
32782244 CCATTCGGCTTTACCACATATACATATCTCATT
131 CCATTCGGCTTTACCACATATACATATCTCATT
* * *
32782277 CACATATACATATCTCATTCATACTTCACACTGGCCATTCGGCTTTACCACATATACATATCTCA
1 CACACATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32782342 TTCGTATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAG
66 TTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
32782407 CCATTCGGCTTTACCACATATACATATCTCAT
131 CCATTCGGCTTTACCACATATACATATCTCAT
32782439 ACATATTTCA
Statistics
Matches: 154, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
163 154 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (163 bp):
CACACATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
TTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCATT
Found at i:32782516 original size:259 final size:259
Alignment explanation
Indices: 32782055--32782614 Score: 888
Period size: 259 Copynumber: 2.2 Consensus size: 259
32782045 TCATACATAT
* *
32782055 TTCGGCTTTACCACATATACATATCTCGTACATATTTCACATTAGCCATTCGGCTTTACCACACA
1 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACA
*
32782120 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATA
66 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
32782185 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
131 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
*
32782250 GGCTTTACCACATATACATATCTCATTCACATATACATATCTCATTCATACTTCACACTGGCCA
196 AGCTTTACCACATATACATATCTCATTCACATATACATATCTCATTCATACTTCACACTGGCCA
* * *
32782314 TTCGGCTTTACCACATATACATATCTCATTCGTATTTCACACTAGCCATTCGGCTTTACCACATA
1 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACA
*
32782379 TACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
66 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
32782444 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
131 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
*
32782509 AGCTTTACCACATATAC--A--T--TT--C---T-CATA---CA-T-AT--TTCACACTAGCCA
196 AGCTTTACCACATATACATATCTCATTCACATATACATATCTCATTCATACTTCACACTGGCCA
* *
32782554 TTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
32782615 TACACATATA
Statistics
Matches: 288, Mismatches: 13, Indels: 19
0.90 0.04 0.06
Matches are distributed among these distances:
240 69 0.24
242 2 0.01
243 1 0.00
244 2 0.01
247 4 0.01
248 1 0.00
251 1 0.00
253 2 0.01
255 1 0.00
257 1 0.00
259 204 0.71
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (259 bp):
TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACA
TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
AGCTTTACCACATATACATATCTCATTCACATATACATATCTCATTCATACTTCACACTGGCCA
Found at i:32785966 original size:40 final size:40
Alignment explanation
Indices: 32785922--32786240 Score: 530
Period size: 40 Copynumber: 8.0 Consensus size: 40
32785912 GAATGCACAT
* * *
32785922 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
32785962 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32786002 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATCTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32786042 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32786082 CATCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32786122 CATCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32786162 CATCAGCACGAATGCTCTTCGGGACTTAGCCCGAACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32786202 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
32786241 TAACTCTCAA
Statistics
Matches: 264, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 264 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:32788483 original size:39 final size:40
Alignment explanation
Indices: 32788382--32788605 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
32788372 TTGAATGATG
* *
32788382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
32788421 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
32788462 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32788501 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
32788540 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32788579 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32788606 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 74 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32788557 original size:79 final size:79
Alignment explanation
Indices: 32788382--32788605 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
32788372 TTGAATGATG
* * * * *
32788382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
32788444 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* *
32788462 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
32788525 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * *
32788540 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
32788605 G
65 G
32788606 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 35 0.28
79 55 0.44
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:32788627 original size:79 final size:77
Alignment explanation
Indices: 32788435--32788638 Score: 216
Period size: 79 Copynumber: 2.6 Consensus size: 77
32788425 GGACTAAGAT
* *
32788435 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAA-TCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
32788499 ATTCCGGGCTAAGC
64 ATACCGGGCTAAGC
* * *
32788513 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACT-AATC-CGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
32788577 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
** * *
32788593 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTGCGAGATA-CTA-ATCCGGTTAAGTCCCGAAGG
32788639 TACGTGATTT
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
78 33 0.31
79 51 0.48
80 23 0.21
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:32790914 original size:11 final size:11
Alignment explanation
Indices: 32790898--32790923 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32790888 CCACATATAC
32790898 ATATCTCATAT
1 ATATCTCATAT
32790909 ATATCTCATAT
1 ATATCTCATAT
32790920 ATAT
1 ATAT
32790924 TTCACACTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATCTCATAT
Found at i:32790972 original size:48 final size:48
Alignment explanation
Indices: 32790909--32791287 Score: 652
Period size: 48 Copynumber: 7.9 Consensus size: 48
32790899 TATCTCATAT
*
32790909 ATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATAC
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
*
32790957 ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
*
32791005 ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
*
32791053 ATATCTCA-ATCATACTTCACACTAGCCATTCGGCTTTACCACATATAC
1 ATATCTCATA-CATATTTCACACTAGCCATTCGGCTTTACCACATATAC
*
32791101 ATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATAC
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
*
32791149 ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
*
32791197 ATATCTCATACATATTTCACACTAGCCATTCGGGTTTACCACATATAC
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
* * *
32791245 ATATCTCATATATATTTCACATTAGCCATTCAGCTTTACCACA
1 ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
32791288 CACATATATA
Statistics
Matches: 315, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 1 0.00
48 313 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
Found at i:32796303 original size:20 final size:20
Alignment explanation
Indices: 32796278--32796331 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
32796268 GGGTGTCACA
32796278 ATCTGAGCTCATGAGTTGTG
1 ATCTGAGCTCATGAGTTGTG
32796298 ATCTGAGCTCATGAGTTGTG
1 ATCTGAGCTCATGAGTTGTG
* * *
32796318 GTATGAGTTCATGA
1 ATCTGAGCTCATGA
32796332 TATATGTGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.22, C:0.13, G:0.30, T:0.35
Consensus pattern (20 bp):
ATCTGAGCTCATGAGTTGTG
Found at i:32811780 original size:55 final size:55
Alignment explanation
Indices: 32811719--32811898 Score: 234
Period size: 55 Copynumber: 3.3 Consensus size: 55
32811709 ATATTAAGTC
* * *
32811719 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32811774 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * * *
32811829 CGCACACTTAGTGCTACATATTCAATTCGCACACTTATTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
*
32811885 CGCACATTTAGTGC
1 CGCACACTTAGTGC
32811899 CGAGATCAAC
Statistics
Matches: 110, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 92 0.84
56 18 0.16
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32811783 original size:28 final size:27
Alignment explanation
Indices: 32811719--32811870 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
32811709 ATATTAAGTC
* *
32811719 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
32811746 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
32811774 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32811801 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
32811829 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
*
32811856 CGCACACTTATTGCT
1 CGCACACTTAGTGCT
32811871 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32819892 original size:55 final size:55
Alignment explanation
Indices: 32819831--32820006 Score: 235
Period size: 55 Copynumber: 3.2 Consensus size: 55
32819821 ATATTAAGTC
* * * *
32819831 CGCACACTCAGTGCTATATAATCAACTCTCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32819886 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
32819941 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32819997 CGCACACTTA
1 CGCACACTTA
32820007 ACGCCAATCT
Statistics
Matches: 107, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 92 0.86
56 15 0.14
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32819895 original size:28 final size:27
Alignment explanation
Indices: 32819831--32819982 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
32819821 ATATTAAGTC
* *
32819831 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32819858 CTCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
32819886 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32819913 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
32819941 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
32819968 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32819983 GCACAATTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32822271 original size:29 final size:30
Alignment explanation
Indices: 32822226--32822293 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
32822216 TGGCCCAAGG
* * *
32822226 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TAAAAATTTGAAGGACTAATAGT
32822256 GTAAATATAAAAATTTGAAGGACTAATAGT
1 GTAAATATAAAAATTTGAAGGACTAATAGT
*
32822286 GCAAATAT
1 GTAAATAT
32822294 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (30 bp):
GTAAATATAAAAATTTGAAGGACTAATAGT
Found at i:32825327 original size:25 final size:25
Alignment explanation
Indices: 32825299--32825374 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
32825289 AGACCATGGT
32825299 TGAAAGATACCATGGCAACATGATA
1 TGAAAGATACCATGGCAACATGATA
* * *
32825324 TGAAATGTGTA--A--G-ACCACGAT-
1 TGAAA-G-ATACCATGGCAACATGATA
32825345 TGAAAGATACCATGGCAACATGATA
1 TGAAAGATACCATGGCAACATGATA
32825370 TGAAA
1 TGAAA
32825375 TGTGTAAGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 6 0.16
22 6 0.16
23 2 0.05
24 6 0.16
25 11 0.30
26 1 0.03
27 2 0.05
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.21
Consensus pattern (25 bp):
TGAAAGATACCATGGCAACATGATA
Found at i:32825330 original size:46 final size:46
Alignment explanation
Indices: 32825280--32825546 Score: 374
Period size: 46 Copynumber: 5.8 Consensus size: 46
32825270 ATTGCGATTC
*
32825280 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
* * *
32825326 AAATGTGTAAGACCACGATTGAAAGATACCATGGCAACATGATATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
* * *
32825372 AAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACATGACATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
* *
32825418 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAGGG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA-TG
* * *
32825465 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACA-G
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
* * *
32825510 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
32825547 TCATTTCGAA
Statistics
Matches: 202, Mismatches: 17, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 158 0.78
47 43 0.21
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
Found at i:32825781 original size:102 final size:102
Alignment explanation
Indices: 32825605--32825809 Score: 401
Period size: 102 Copynumber: 2.0 Consensus size: 102
32825595 GTTAAACAAC
*
32825605 TAATATTCAGGTAATATGTACCAGATGACAAATGGTGATATGAATTGGTTATATAAAATGGTTGT
1 TAATATTCAGGTAATATATACCAGATGACAAATGGTGATATGAATTGGTTATATAAAATGGTTGT
32825670 GTGAAATGTTTACAGGAATTGGTCATATGGAAATATA
66 GTGAAATGTTTACAGGAATTGGTCATATGGAAATATA
32825707 TAATATTCAGGTAATATATACCAGATGACAAATGGTGATATGAATTGGTTATATAAAATGGTTGT
1 TAATATTCAGGTAATATATACCAGATGACAAATGGTGATATGAATTGGTTATATAAAATGGTTGT
32825772 GTGAAATGTTTACAGGAATTGGTCATATGGAAATATA
66 GTGAAATGTTTACAGGAATTGGTCATATGGAAATATA
32825809 T
1 T
32825810 GTACAAAATA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 102 1.00
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.35
Consensus pattern (102 bp):
TAATATTCAGGTAATATATACCAGATGACAAATGGTGATATGAATTGGTTATATAAAATGGTTGT
GTGAAATGTTTACAGGAATTGGTCATATGGAAATATA
Found at i:32826155 original size:24 final size:23
Alignment explanation
Indices: 32826124--32826170 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
32826114 ATTACATGAT
*
32826124 TATTCTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTGGGTTGGA
32826147 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGGGTTGGA
32826171 ATCCATGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGGGTTGGA
Found at i:32828436 original size:8 final size:8
Alignment explanation
Indices: 32828425--32828449 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32828415 TTTAATAAGA
32828425 TATTTTAT
1 TATTTTAT
32828433 TATTTTAT
1 TATTTTAT
32828441 TATTTTAT
1 TATTTTAT
32828449 T
1 T
32828450 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:32831178 original size:18 final size:19
Alignment explanation
Indices: 32831154--32831196 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
32831144 GTAACGCCCC
*
32831154 AATTTTCGGGATCTTC-GGG
1 AATTTTCAGGAT-TTCTGGG
32831173 -ATTTTCAGGATTTCTGGG
1 AATTTTCAGGATTTCTGGG
32831191 AATTTT
1 AATTTT
32831197 AGCGAACTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.14
18 13 0.62
19 5 0.24
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.44
Consensus pattern (19 bp):
AATTTTCAGGATTTCTGGG
Found at i:32833041 original size:27 final size:26
Alignment explanation
Indices: 32833003--32833088 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 26
32832993 GGAAGAAGTA
*
32833003 TTCTGGTGGCTCTACCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
*
32833030 TTCTGGTGGCTCTGCCACAATATTTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* *
32833056 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
32833083 TTCTGG
1 TTCTGG
32833089 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.25
27 40 0.75
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:32838969 original size:18 final size:19
Alignment explanation
Indices: 32838945--32838987 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
32838935 GTAACGCCCC
32838945 AATTTTTGGGATCTTC-GGG
1 AATTTTTGGGAT-TTCTGGG
32838964 -ATTTTTGGGATTTCTGGG
1 AATTTTTGGGATTTCTGGG
32838982 AATTTT
1 AATTTT
32838988 AGCGAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 14 0.64
19 5 0.23
ACGTcount: A:0.16, C:0.07, G:0.28, T:0.49
Consensus pattern (19 bp):
AATTTTTGGGATTTCTGGG
Found at i:32840824 original size:27 final size:26
Alignment explanation
Indices: 32840786--32840872 Score: 129
Period size: 27 Copynumber: 3.3 Consensus size: 26
32840776 GGAAGAAGTA
32840786 TTCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
*
32840813 TTCTGGTGGCTCTGCCACAATATTTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* *
32840839 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
32840866 TTCTGGT
1 TTCTGGT
32840873 AGCCGTGCTG
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 14 0.25
27 41 0.75
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:32843779 original size:25 final size:25
Alignment explanation
Indices: 32843737--32843785 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
32843727 ATTTATTATT
* *
32843737 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
32843762 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
32843786 GGTCCTCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:32847181 original size:15 final size:15
Alignment explanation
Indices: 32847158--32847191 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
32847148 TGGAAGGATT
32847158 ATGGCTTTCTCCAAA
1 ATGGCTTTCTCCAAA
*
32847173 ATGGTTTTCTCCAAA
1 ATGGCTTTCTCCAAA
32847188 ATGG
1 ATGG
32847192 ATAAATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (15 bp):
ATGGCTTTCTCCAAA
Found at i:32847249 original size:11 final size:12
Alignment explanation
Indices: 32847228--32847262 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
32847218 GTAGGTTTCA
32847228 AAAAATGGAAAT
1 AAAAATGGAAAT
*
32847240 AAAAATGAAAAT
1 AAAAATGGAAAT
*
32847252 AGAAATGGAAA
1 AAAAATGGAAA
32847263 CTTGCAATCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (12 bp):
AAAAATGGAAAT
Found at i:32849899 original size:20 final size:21
Alignment explanation
Indices: 32849874--32849913 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32849864 CACTTGAAAC
*
32849874 AGGGC-ACATACTCGTGTGGA
1 AGGGCAACATACCCGTGTGGA
*
32849894 AGGGCAACATGCCCGTGTGG
1 AGGGCAACATACCCGTGTGG
32849914 CCTTGTTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.17
Consensus pattern (21 bp):
AGGGCAACATACCCGTGTGGA
Found at i:32851999 original size:38 final size:38
Alignment explanation
Indices: 32851957--32852100 Score: 209
Period size: 38 Copynumber: 3.8 Consensus size: 38
32851947 ACTTTAAGAT
* *
32851957 CGGATATAATACCAGCACTAGGCCTGCAGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCAGGATTTAACC
*
32851995 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCAGGATTTAACC
*
32852033 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCAGGATTTAACC
* * *
32852071 CGGATATATTTCCAGCA-TATAGCCTGCAGG
1 CGGATATAATACCAGCACGA-AGCCTGCAGG
32852101 TCTTTAAGCC
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
37 1 0.01
38 97 0.99
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21
Consensus pattern (38 bp):
CGGATATAATACCAGCACGAAGCCTGCAGGATTTAACC
Found at i:32860308 original size:49 final size:49
Alignment explanation
Indices: 32860248--32860466 Score: 188
Period size: 49 Copynumber: 4.6 Consensus size: 49
32860238 CATTAAAGTC
* *
32860248 GATGCCGTGTCCCAGACAGGTCTTATACTGACTTTCATATATCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCT
* * * *
32860297 GATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCG-GTG-T
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCT
* * * * *
32860345 CGATGCCATGTCCCTGATAGGTCTTACACTGAC--ACACA-A-C-AAGCT
1 -GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCT
* ** *
32860390 GACGCCATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCCCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAGGCT
*
32860439 GAT-CCATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
32860467 CCTCTCGTCT
Statistics
Matches: 135, Mismatches: 24, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 28 0.21
45 2 0.01
46 3 0.02
47 2 0.01
48 27 0.20
49 72 0.53
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCT
Found at i:32860367 original size:98 final size:93
Alignment explanation
Indices: 32860245--32860418 Score: 222
Period size: 93 Copynumber: 1.8 Consensus size: 93
32860235 GTACATTAAA
* * * * * *
32860245 GTCGATGCCGTGTCCCAGACAGGTCTTATACTGACTTTCATATATCGAGGCTGATGCCATGTCCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-A-C-AAGCTGACGCCATGTCCC
32860310 AAACAGGTCTTACACTGGCTCTCATCTATCGGT
61 AAACAGGTCTTACACTGGCTCTCATCTATCGGT
* * *
32860343 GTCGATGCCATGTCCCTGATAGGTCTTACACTGACACACAACAAGCTGACGCCATGTCCCAGACA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGACGCCATGTCCCAAACA
32860408 GGTCTTACACT
66 GGTCTTACACT
32860419 AGCTTGTATA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
93 31 0.46
94 1 0.01
95 1 0.01
96 3 0.04
98 31 0.46
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (93 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGACGCCATGTCCCAAACA
GGTCTTACACTGGCTCTCATCTATCGGT
Found at i:32862892 original size:28 final size:26
Alignment explanation
Indices: 32862842--32862952 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
32862832 AGCATGGCTG
* *
32862842 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
32862868 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
32862896 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
32862923 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
32862950 CCA
1 CCA
32862953 AAACGCTTCC
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 53 0.71
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:32862906 original size:54 final size:54
Alignment explanation
Indices: 32862842--32862952 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
32862832 AGCATGGCTG
*
32862842 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAAATAATCGTGGCAGAGCCA
* * * * *
32862896 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
32862950 CCA
1 CCA
32862953 AAACGCTTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
Found at i:32864607 original size:26 final size:26
Alignment explanation
Indices: 32864569--32864678 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
32864559 CATGAAATTC
*
32864569 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
32864595 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
* *
32864621 TTATCATGGAACATTTGCCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
32864647 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
32864673 TTATCA
1 TTATCA
32864679 ATTTGCATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:32866636 original size:40 final size:40
Alignment explanation
Indices: 32866559--32866735 Score: 288
Period size: 40 Copynumber: 4.5 Consensus size: 40
32866549 AAACCAAGTA
* *
32866559 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
32866598 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32866638 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32866677 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32866717 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32866736 TTATCATCCA
Statistics
Matches: 130, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
39 52 0.40
40 78 0.60
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32866690 original size:79 final size:80
Alignment explanation
Indices: 32866559--32866735 Score: 288
Period size: 79 Copynumber: 2.2 Consensus size: 80
32866549 AAACCAAGTA
* * *
32866559 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
32866623 TAACTCGCACAAATG
66 CAACTCGCACAAATG
32866638 CCTTC-GGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
32866701 GCAACTCGCACAAATG
65 GCAACTCGCACAAATG
32866717 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32866736 TTATCATCCA
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
78 8 0.09
79 70 0.77
80 13 0.14
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
CAACTCGCACAAATG
Found at i:32877161 original size:40 final size:40
Alignment explanation
Indices: 32877091--32877268 Score: 288
Period size: 40 Copynumber: 4.5 Consensus size: 40
32877081 AAACCAAGTA
* * *
32877091 CCTTCGGGATTTAG-TCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
32877130 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32877170 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32877210 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32877250 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32877269 TTATCATCCG
Statistics
Matches: 130, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.11
40 116 0.89
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32887923 original size:17 final size:17
Alignment explanation
Indices: 32887885--32887923 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
32887875 TTAGAATTGG
*
32887885 GTTGAGAAAATAATTTA
1 GTTGAGAAAATAAATTA
* *
32887902 ATTGAGAAATTAAATTA
1 GTTGAGAAAATAAATTA
32887919 GTTGA
1 GTTGA
32887924 TTTAATTACT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.18, T:0.36
Consensus pattern (17 bp):
GTTGAGAAAATAAATTA
Found at i:32894232 original size:13 final size:13
Alignment explanation
Indices: 32894216--32894240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32894206 TAATTTTTTA
32894216 TTTTTAATTAATC
1 TTTTTAATTAATC
32894229 TTTTTAATTAAT
1 TTTTTAATTAAT
32894241 TTCTCTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATC
Found at i:32896244 original size:49 final size:50
Alignment explanation
Indices: 32896175--32896420 Score: 271
Period size: 49 Copynumber: 4.9 Consensus size: 50
32896165 ATCTATTGTG
* *
32896175 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * ** *
32896225 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
32896275 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * *
32896325 AGGTCACGCGTGTAGTACCAAGTGCAGGCTACTACATGTATCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * *
32896375 -GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
32896421 GCTTTGGCTA
Statistics
Matches: 161, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 77 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:32900761 original size:30 final size:28
Alignment explanation
Indices: 32900695--32900763 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
32900685 GCTTCAAGGG
* *
32900695 ACACACGGCCATGTACCAAGGCCACGTC
1 ACACACGGTCGTGTACCAAGGCCACGTC
* *
32900723 ACAAACGGTCGTGTACCAAGGCCATGTGTC
1 ACACACGGTCGTGTACCAAGGCCA--CGTC
32900753 ACACACGGTCG
1 ACACACGGTCG
32900764 AGCCATACGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 21 0.62
30 13 0.38
ACGTcount: A:0.28, C:0.33, G:0.25, T:0.14
Consensus pattern (28 bp):
ACACACGGTCGTGTACCAAGGCCACGTC
Found at i:32902133 original size:42 final size:43
Alignment explanation
Indices: 32902085--32902234 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
32902075 TATCCTAGAA
* * *
32902085 ATGGTCTTACATGTTATCACATATCGATGCC-ATGTCCCAGAG
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * * * * *
32902127 AGGGTCTTATACGAAATCATATAACGATACCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* *
32902170 ATGGTTTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
* *
32902213 ATGGTCTTACATGTTATCACAT
1 ATGGTCTTACACGTAATCACAT
32902235 CTCGTAATCC
Statistics
Matches: 83, Mismatches: 22, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
42 24 0.29
43 59 0.71
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:32904347 original size:26 final size:26
Alignment explanation
Indices: 32904309--32904361 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
32904299 AAACTCTTCT
32904309 AAAAGAAACTC-AAGAGAAATTATTG
1 AAAAGAAACTCAAAGAGAAATTATTG
*
32904334 AAAAGAAAACTCAAAGAGAATTTATTG
1 AAAAG-AAACTCAAAGAGAAATTATTG
32904361 A
1 A
32904362 CTCAAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 5 0.20
26 6 0.24
27 14 0.56
ACGTcount: A:0.57, C:0.08, G:0.15, T:0.21
Consensus pattern (26 bp):
AAAAGAAACTCAAAGAGAAATTATTG
Found at i:32908050 original size:48 final size:47
Alignment explanation
Indices: 32907953--32908129 Score: 196
Period size: 48 Copynumber: 3.7 Consensus size: 47
32907943 GTAAATTGCT
* * * * * ** *
32907953 GATGCCATATCCCAGACATTGTTTTACACTGGCTCACATGTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-AAGTGGCC
* *
32908001 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTCAA-T-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AAGTGGCC
*
32908049 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAA-GTGGCC
32908097 GATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
32908130 CCACCTATCA
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
45 2 0.02
46 1 0.01
47 1 0.01
48 104 0.95
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGTGGCC
Found at i:32908117 original size:96 final size:96
Alignment explanation
Indices: 32907953--32908129 Score: 282
Period size: 96 Copynumber: 1.8 Consensus size: 96
32907943 GTAAATTGCT
* * **
32907953 GATGCCATATCCCAGACATTGTTTTACACTGGCTCACATGTTGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCGATGCCATGTCCCAGAC
*
32908018 ATGGTCTTATACTAGCTCTCGTCTCAATGCC
66 ATGGTCTTACACTAGCTCTCGTCTCAATGCC
* * *
32908049 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
1 GATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCGATGCCATGTCCCAGAC
32908114 ATGGTCTTACACTAGC
66 ATGGTCTTACACTAGC
32908130 CCACCTATCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (96 bp):
GATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCGTCTCAATGCC
Found at i:32908431 original size:7 final size:7
Alignment explanation
Indices: 32908419--32908463 Score: 72
Period size: 7 Copynumber: 6.4 Consensus size: 7
32908409 AATTTATTTA
32908419 TTTAGGG
1 TTTAGGG
32908426 TTTAGGG
1 TTTAGGG
**
32908433 TTTATAG
1 TTTAGGG
32908440 TTTAGGG
1 TTTAGGG
32908447 TTTAGGG
1 TTTAGGG
32908454 TTTAGGG
1 TTTAGGG
32908461 TTT
1 TTT
32908464 GTAGTAACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:32908442 original size:14 final size:14
Alignment explanation
Indices: 32908425--32908468 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
32908415 TTTATTTAGG
32908425 GTTTAGGGTTTATA
1 GTTTAGGGTTTATA
**
32908439 GTTTAGGGTTTAGG
1 GTTTAGGGTTTATA
*
32908453 GTTTAGGGTTTGTA
1 GTTTAGGGTTTATA
32908467 GT
1 GT
32908469 AACCTTAAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTATA
Found at i:32911876 original size:39 final size:39
Alignment explanation
Indices: 32911822--32912132 Score: 496
Period size: 39 Copynumber: 8.0 Consensus size: 39
32911812 AAGACACTGA
*
32911822 AAATGTATCCCGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
32911861 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
32911900 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32911939 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32911978 AAATGTATCCGGACTAAAGTTCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
32912017 AAATGTATCCGGGCCAAAGTCCAGCAGGCTTCGTACTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32912056 AAATTTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
32912095 AAATGTATCTGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
32912133 ATAATATAAT
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 252 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:32915400 original size:30 final size:30
Alignment explanation
Indices: 32915339--32915402 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
32915329 GGGGTAGACC
* *
32915339 TGTGTCACACACGGCCTAGACCCACCTCCG
1 TGTGTCACACACGGCCTAGACACAACTCCG
32915369 TGTGTCACACACGGCCTAGACACATAC-CCG
1 TGTGTCACACACGGCCTAGACACA-ACTCCG
32915399 TGTG
1 TGTG
32915403 GACAAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.22, C:0.38, G:0.22, T:0.19
Consensus pattern (30 bp):
TGTGTCACACACGGCCTAGACACAACTCCG
Found at i:32916315 original size:48 final size:48
Alignment explanation
Indices: 32916179--32916445 Score: 201
Period size: 48 Copynumber: 5.6 Consensus size: 48
32916169 AAGAGGGTAA
* * *
32916179 AATGCCAATTCCATGTCCCAGACATCGTCTTACACTGGCTCATATGTC--
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-TGTCTT
* * * * *
32916227 GAGGCCGATGCCATGT-CCAAACATGGCCTTACACTAGCTCTTGTCTT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTGTCTT
* * *
32916274 AATGCCGATGCCATGTCCCAAATATGGTCTTACACTGGCTC---TCAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTGTCTT
* * * *** * *
32916319 AACGTGGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
1 AA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTGTCTT
* *
32916370 AACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC---TCAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTGTCTT
*
32916415 AATGTGGCCAATGCCATGTCCCAGACATGGT
1 AA--T-GCCGATGCCATGTCCCAGACATGGT
32916446 TTTATACTAG
Statistics
Matches: 176, Mismatches: 31, Indels: 24
0.76 0.13 0.10
Matches are distributed among these distances:
45 12 0.07
46 1 0.01
47 35 0.20
48 125 0.71
51 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTGTCTT
Found at i:32916388 original size:96 final size:96
Alignment explanation
Indices: 32916189--32916466 Score: 344
Period size: 96 Copynumber: 2.9 Consensus size: 96
32916179 AATGCCAATT
* ** * *
32916189 CCATGTCCCAGACATCGTCTTACACTGGCTCAT-ATGTCGAGGCCGATGCCATGT-CCAAACATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAACGTGGCCGATGCCATGTCCCAGACATG
* * *** * * *
32916252 GCCTTACACTAGCTCTTGTCTTAATGCCGATG
65 GTCTTACACTAGCACACATATCAACGCCGATG
* * *
32916284 CCATGTCCCAAATATGGTCTTACACTGGCTCTCATAACGTGGTCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGACATGG
32916349 TCTTACACTAGCACACATATCAACGCCGATG
66 TCTTACACTAGCACACATATCAACGCCGATG
* *
32916380 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGACATGG
* * *
32916445 TTTTATACTAGCACACCTATCA
66 TCTTACACTAGCACACATATCA
32916467 CCCAAATGTC
Statistics
Matches: 157, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
94 1 0.01
95 45 0.29
96 111 0.71
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGACATGG
TCTTACACTAGCACACATATCAACGCCGATG
Found at i:32918014 original size:52 final size:52
Alignment explanation
Indices: 32917885--32918092 Score: 233
Period size: 52 Copynumber: 4.0 Consensus size: 52
32917875 TTTTTATGAG
* * * * * *
32917885 AAAAATGTCTTCATTCTTTGAAACCATCCATGGTCATGCATTTGAATGGGAA
1 AAAAATGTATTCATGCATTGAAACCATCCATGCTCATGTATTTGAATGAGAA
* *
32917937 AAAAACTGTTTTCATGCATTGAAACCATCCATTCTCATGTATTTGAATGAGAA
1 AAAAA-TGTATTCATGCATTGAAACCATCCATGCTCATGTATTTGAATGAGAA
* *
32917990 AAAAATGTATTCATGCACTGAAACCATCCATGCTTATGTATTTGAATGAGAA
1 AAAAATGTATTCATGCATTGAAACCATCCATGCTCATGTATTTGAATGAGAA
** * * * *
32918042 AAAGGTCTA-T-ATGCATTGAAACCCTCTATGCT-TTAGTATTTGAATGAGAA
1 AAAAATGTATTCATGCATTGAAACCATCCATGCTCAT-GTATTTGAATGAGAA
32918092 A
1 A
32918093 TACATCTCTA
Statistics
Matches: 136, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
49 1 0.01
50 35 0.26
51 1 0.01
52 54 0.40
53 45 0.33
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (52 bp):
AAAAATGTATTCATGCATTGAAACCATCCATGCTCATGTATTTGAATGAGAA
Found at i:32918109 original size:50 final size:50
Alignment explanation
Indices: 32917902--32918113 Score: 174
Period size: 50 Copynumber: 4.1 Consensus size: 50
32917892 TCTTCATTCT
* * * * * * * *
32917902 TTGAAACCATCCATGGTCATGCATTTGAATGGGAAAAAAACTGTTTTCATGCA
1 TTGAAACCATCCATGCTTATGTATTTGAATGAGAAAAACA-T-CTAT-ATACA
* * * * *
32917955 TTGAAACCATCCATTCTCATGTATTTGAATGAGAAAAAAATGTATTCATGCA
1 TTGAAACCATCCATGCTTATGTATTTGAATGAGAAAAACATCTA-T-ATACA
* ** *
32918007 CTGAAACCATCCATGCTTATGTATTTGAATGAGAAAAAGGTCTATATGCA
1 TTGAAACCATCCATGCTTATGTATTTGAATGAGAAAAACATCTATATACA
* * * *
32918057 TTGAAACCCTCTATGCTT-TAGTATTTGAATGAGAAATACATCTCTATACA
1 TTGAAACCATCCATGCTTAT-GTATTTGAATGAGAAAAACATCTATATACA
32918107 TTGAAAC
1 TTGAAAC
32918114 TGTCCATGTT
Statistics
Matches: 137, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 52 0.38
51 2 0.01
52 46 0.34
53 36 0.26
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (50 bp):
TTGAAACCATCCATGCTTATGTATTTGAATGAGAAAAACATCTATATACA
Found at i:32918163 original size:19 final size:19
Alignment explanation
Indices: 32918139--32918191 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
32918129 CTTAAAAGCT
32918139 TCCATCCATGCTTGAAATG
1 TCCATCCATGCTTGAAATG
*
32918158 TCCATCTATGCTTGAAATG
1 TCCATCCATGCTTGAAATG
32918177 TCCATCCATGCTTGA
1 TCCATCCATGCTTGA
32918192 TGCTTGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (19 bp):
TCCATCCATGCTTGAAATG
Found at i:32921448 original size:30 final size:28
Alignment explanation
Indices: 32921403--32921464 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
32921393 CCCTCAATTC
* *
32921403 TTCTTTCTAGCTCATTCTCTCTCTTTTTTT
1 TTCTCTCTAGCTCATT-T-TCTCTTTTCTT
*
32921433 TTCTCTCTTGCTCATTTTCTCTTTTCTT
1 TTCTCTCTAGCTCATTTTCTCTTTTCTT
32921461 TTCT
1 TTCT
32921465 TTTTTCTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 14 0.48
29 1 0.03
30 14 0.48
ACGTcount: A:0.05, C:0.27, G:0.03, T:0.65
Consensus pattern (28 bp):
TTCTCTCTAGCTCATTTTCTCTTTTCTT
Found at i:32921499 original size:35 final size:35
Alignment explanation
Indices: 32921422--32921509 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 35
32921412 GCTCATTCTC
* *
32921422 TCTCTTTTTTTTTCTCTCTTGCTCATTTTCTCTTT
1 TCTCTTTCTTTTTCTCTCTTGCTCATCTTCTCTTT
*
32921457 TCT-TTTCTTTTT-TCT-TTGCCTTATCTTCTTCTTT
1 TCTCTTTCTTTTTCTCTCTTG-CTCATCTTC-TCTTT
32921491 TCTCTTTCTCATTTTCTCT
1 TCTCTTTCT--TTTTCTCT
32921510 TGATTTTGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
32 3 0.07
33 10 0.23
34 16 0.36
35 8 0.18
37 4 0.09
38 3 0.07
ACGTcount: A:0.03, C:0.26, G:0.02, T:0.68
Consensus pattern (35 bp):
TCTCTTTCTTTTTCTCTCTTGCTCATCTTCTCTTT
Found at i:32924766 original size:19 final size:19
Alignment explanation
Indices: 32924702--32924776 Score: 78
Period size: 19 Copynumber: 3.9 Consensus size: 19
32924692 CCATACTCCA
32924702 TGCTTGAAATCATCCATCTT
1 TGCTTGAAA-CATCCATCTT
* * *
32924722 TACTTGAAACGTCCATATT
1 TGCTTGAAACATCCATCTT
* *
32924741 TGTTTGAAACATCCATCTA
1 TGCTTGAAACATCCATCTT
* *
32924760 CGCTTGAAACACCCATC
1 TGCTTGAAACATCCATC
32924777 CATGCTTGAT
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
19 36 0.82
20 8 0.18
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (19 bp):
TGCTTGAAACATCCATCTT
Found at i:32924783 original size:19 final size:19
Alignment explanation
Indices: 32924744--32924785 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
32924734 CCATATTTGT
* *
32924744 TTGAAACATCCATCTACGC
1 TTGAAACACCCATCCACGC
*
32924763 TTGAAACACCCATCCATGC
1 TTGAAACACCCATCCACGC
32924782 TTGA
1 TTGA
32924786 TGCTTGAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (19 bp):
TTGAAACACCCATCCACGC
Found at i:32927223 original size:26 final size:26
Alignment explanation
Indices: 32927194--32927262 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
32927184 CATTCTGACC
*
32927194 CATAGCTCGTGTGAGTAGG-TGTATTT
1 CATAGCTCGTGTGAGCAGGCT-TATTT
*
32927220 CATAGCTGGTGTGAGCAGGCTTATTT
1 CATAGCTCGTGTGAGCAGGCTTATTT
*
32927246 CATAGCTCGTGTAAGCA
1 CATAGCTCGTGTGAGCA
32927263 ATAATGTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 37 0.97
27 1 0.03
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (26 bp):
CATAGCTCGTGTGAGCAGGCTTATTT
Found at i:32929168 original size:27 final size:28
Alignment explanation
Indices: 32929101--32929171 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
32929091 TTGGCTGGAG
* *
32929101 CTAAAACATATTAAAATTATGTAATAGG
1 CTAAGACATATTAAAATTATGTAATAGA
* * *
32929129 CTAAGAAAAATTAATAA-TATGTATTA-A
1 CTAAGACATATTAA-AATTATGTAATAGA
32929156 CTAAGACATATTAAAA
1 CTAAGACATATTAAAA
32929172 ACATGCATTA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
26 2 0.06
27 12 0.34
28 19 0.54
29 2 0.06
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (28 bp):
CTAAGACATATTAAAATTATGTAATAGA
Found at i:32943780 original size:43 final size:43
Alignment explanation
Indices: 32943683--32943790 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
32943673 ACCGAGATGT
* * * * *
32943683 GATTACATGTAAGACCATCTCTGGGACATTGGCATTGTATTGT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
* *
32943726 GACTAT-GTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GA-TTTCATGTAAGACCATGTCTGGGACATTGGCATCG-TAATGC
*
32943769 GATTTCATGTAAGACCCTGTCT
1 GATTTCATGTAAGACCATGTCT
32943791 AGAACAGTGT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
42 2 0.04
43 46 0.88
44 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
Found at i:32945223 original size:40 final size:40
Alignment explanation
Indices: 32945145--32945361 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
32945135 CGGATGATAG
* *
32945145 CCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATAT
*
32945184 CTGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATAT
* * *
32945224 CCGGGCTAAGTCTCGAAGG-TGTTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACTATAT
** *
32945264 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATAT
** * *
32945304 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACTATAT
*
32945344 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32945362 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 38 0.25
40 111 0.72
41 6 0.04
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATAT
Found at i:32945277 original size:80 final size:80
Alignment explanation
Indices: 32945145--32945361 Score: 278
Period size: 80 Copynumber: 2.7 Consensus size: 80
32945135 CGGATGATAG
** * * *
32945145 CCGGGCTAAGTCCCGAAGGCA-TGGTGCTAG-TGACTATATCTGGGCTAAGTCCCGAAGGCAGTT
1 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTT
*
32945208 GTGCTATTGACTATAT
65 GTGCTAGTGACTATAT
** * ** **
32945224 CCGGGCTAAGTCTCGAAGGTGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTTG
1 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
32945289 TGCTAGTGACTATAT
66 TGCTAGTGACTATAT
*
32945304 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
32945362 TACTTGGGTT
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 33 0.27
80 86 0.71
81 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
TGCTAGTGACTATAT
Found at i:32952169 original size:40 final size:40
Alignment explanation
Indices: 32952087--32952307 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
32952077 TATTCGGATG
* * *
32952087 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
32952126 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
32952166 ATATCCGGGCTAAGTCTCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
32952206 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
32952246 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
32952286 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32952308 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 42 0.26
40 114 0.71
41 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:32952227 original size:80 final size:79
Alignment explanation
Indices: 32952087--32952307 Score: 311
Period size: 80 Copynumber: 2.8 Consensus size: 79
32952077 TATTCGGATG
* * * *
32952087 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAG-TGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCA
*
32952151 GTTGTGCTATTGACT
65 GTTGTGCTAGTGACT
* *
32952166 ATATCCGGGCTAAGTCTCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
*
32952231 TTTGTGCTAGTGACT
65 GTTGTGCTAGTGACT
* *
32952246 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
32952308 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 38 0.30
80 88 0.69
81 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAG
TTGTGCTAGTGACT
Found at i:32954887 original size:15 final size:14
Alignment explanation
Indices: 32954865--32954899 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
32954855 AATAATCCAC
*
32954865 ATAAAAATGAATTA
1 ATAAAAATGAATGA
32954879 ATAAGAAATGAATGA
1 ATAA-AAATGAATGA
32954894 ATAAAA
1 ATAAAA
32954900 GAAGAAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (14 bp):
ATAAAAATGAATGA
Found at i:32956166 original size:24 final size:24
Alignment explanation
Indices: 32956137--32956272 Score: 141
Period size: 24 Copynumber: 5.7 Consensus size: 24
32956127 GAAATGACTT
32956137 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* **
32956161 TAGCACTATGTGTGCGAATTTCTA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
32956185 CGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
32956209 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
32956233 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
32956258 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
32956273 GGTAAACATG
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
24 89 0.97
25 2 0.02
26 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:32956262 original size:72 final size:72
Alignment explanation
Indices: 32956137--32956273 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
32956127 GAAATGACTT
* * * *
32956137 TGGCACTATGTGTGCGAATTTGAATAGCACTATGTGTGCGAATTTCTACGGCACTATGTGTGCGG
1 TGGCACTATGTGTGCGAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
32956202 ATTTGTA
66 ATTTGTA
* *
32956209 TGGCACTATGTGTGCGGATTTGAAT-GTCAATATGTATGTGAATTACTAAGGCACTATGTGTGCG
1 TGGCACTATGTGTGCGAATTTGAATAG-CAATATGTATGCGAATTACTAAGGCACTATGTGTGCG
32956273 G
65 G
32956274 GTAAACATGG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
71 1 0.02
72 57 0.98
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.34
Consensus pattern (72 bp):
TGGCACTATGTGTGCGAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
ATTTGTA
Found at i:32956284 original size:72 final size:72
Alignment explanation
Indices: 32956137--32956298 Score: 191
Period size: 72 Copynumber: 2.2 Consensus size: 72
32956127 GAAATGACTT
* * * *
32956137 TGGCACTATGTGTGCGAATTTGAATAGCACTATGTGTGCGAATTTCTACGGCACTATGTGTGCGG
1 TGGCACTATGTGTGCGAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
****
32956202 ATTTGTA
66 ATAAACA
* *
32956209 TGGCACTATGTGTGCGGATTTGAAT-GTCAATATGTATGTGAATTACTAAGGCACTATGTGTGCG
1 TGGCACTATGTGTGCGAATTTGAATAG-CAATATGTATGCGAATTACTAAGGCACTATGTGTGCG
*
32956273 GGTAAACA
65 GATAAACA
* *
32956281 TGGCACTTTGGGTGCGAA
1 TGGCACTATGTGTGCGAA
32956299 ATTCCTTGCT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
71 1 0.01
72 74 0.99
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (72 bp):
TGGCACTATGTGTGCGAATTTGAATAGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
ATAAACA
Found at i:32957900 original size:24 final size:24
Alignment explanation
Indices: 32957868--32957922 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
32957858 TGAGAGTGTG
*
32957868 GCGCCTGCTTCCGCGCTAGGGACA
1 GCGCCTGCTTCCGCGCTAGGAACA
32957892 GCGCCTGCTTCCGCGCTAGGAACA
1 GCGCCTGCTTCCGCGCTAGGAACA
32957916 GCGCCTG
1 GCGCCTG
32957923 TTGAACCTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.13, C:0.38, G:0.33, T:0.16
Consensus pattern (24 bp):
GCGCCTGCTTCCGCGCTAGGAACA
Found at i:32963379 original size:27 final size:28
Alignment explanation
Indices: 32963270--32963392 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
32963260 GAGATTGGCG
* * * *
32963270 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
32963299 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32963327 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
32963355 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
32963382 CTGAGTGTGCG
1 CTAAGTGTGCG
32963393 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.26
28 49 0.56
29 15 0.17
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:32963403 original size:27 final size:27
Alignment explanation
Indices: 32963295--32963405 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 27
32963285 TAAATTGTAC
*
32963295 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
* *
32963323 AGCACTAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
32963351 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
32963378 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
32963405 A
1 A
32963406 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 29 0.38
28 47 0.62
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:32965807 original size:11 final size:11
Alignment explanation
Indices: 32965776--32965809 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
32965766 CGAGTCATAA
**
32965776 AATTTATTTAA
1 AATTTATTTGC
32965787 AATTTATTTGC
1 AATTTATTTGC
32965798 AATTTATTTGC
1 AATTTATTTGC
32965809 A
1 A
32965810 TATCTTCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (11 bp):
AATTTATTTGC
Found at i:32966099 original size:15 final size:14
Alignment explanation
Indices: 32966076--32966111 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
32966066 AAATAATCCA
*
32966076 AATAAAAATGAATT
1 AATAAAAATGAATG
32966090 AATAAGAAATGAATG
1 AATAA-AAATGAATG
32966105 AATAAAA
1 AATAAAA
32966112 GAAGAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (14 bp):
AATAAAAATGAATG
Found at i:32967385 original size:24 final size:24
Alignment explanation
Indices: 32967358--32967443 Score: 95
Period size: 24 Copynumber: 3.6 Consensus size: 24
32967348 GAAATGACTT
32967358 TGGCACTATGTGTGTGAATTTGAA
1 TGGCACTATGTGTGTGAATTTGAA
* *
32967382 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGTGAATTTGAA
* * *
32967406 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGTGAATT--TGAA
32967431 -GGCACTATGTGTG
1 TGGCACTATGTGTG
32967444 CGGGTAAACA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 47 0.94
25 2 0.04
26 1 0.02
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGTGAATTTGAA
Found at i:32973474 original size:21 final size:20
Alignment explanation
Indices: 32973445--32973483 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32973435 AACGTCTCTA
*
32973445 TTCATTGAAACTGTCCATGC
1 TTCATTGAAACTATCCATGC
*
32973465 TTCAGTTGAATCTATCCAT
1 TTCA-TTGAAACTATCCAT
32973484 CTATGTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (20 bp):
TTCATTGAAACTATCCATGC
Found at i:32981398 original size:10 final size:9
Alignment explanation
Indices: 32981372--32981396 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32981362 GCTCATTAGC
32981372 AAAAAAACA
1 AAAAAAACA
32981381 AAAAAAACA
1 AAAAAAACA
32981390 AAAAAAA
1 AAAAAAA
32981397 ACTATTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:32992494 original size:37 final size:37
Alignment explanation
Indices: 32992444--32992519 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
32992434 TAATTAAGAA
32992444 TTATAGTTTATATGCCTAGATTCCTTATTGAGTCTAG
1 TTATAGTTTATATGCCTAGATTCCTTATTGAGTCTAG
32992481 TTATAGTTTATATGCCTAGATTCCTTATTGAGTCTAG
1 TTATAGTTTATATGCCTAGATTCCTTATTGAGTCTAG
32992518 TT
1 TT
32992520 TTAAATGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (37 bp):
TTATAGTTTATATGCCTAGATTCCTTATTGAGTCTAG
Found at i:32993639 original size:24 final size:22
Alignment explanation
Indices: 32993575--32993644 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 22
32993565 GACCAAATAA
32993575 AAAATATTGAATAAATTTTAAATAT
1 AAAATATT-AATAAATTTT--ATAT
* *
32993600 AAAATATTCATCAATTTTATAT
1 AAAATATTAATAAATTTTATAT
*
32993622 AAAACTCATTAATAAATTCTATA
1 AAAA-T-ATTAATAAATTTTATA
32993645 AATAAAAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
22 8 0.21
23 1 0.03
24 21 0.55
25 8 0.21
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.40
Consensus pattern (22 bp):
AAAATATTAATAAATTTTATAT
Found at i:32993789 original size:5 final size:6
Alignment explanation
Indices: 32993774--32993812 Score: 51
Period size: 6 Copynumber: 6.0 Consensus size: 6
32993764 ATGAGTGACT
32993774 TTTTTA TTTTTA TTTTTA TATTTTAA TTTTTA TCTTTTA
1 TTTTTA TTTTTA TTTTTA T-TTTT-A TTTTTA T-TTTTA
32993813 AATGTGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 15 0.50
7 13 0.43
8 2 0.07
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:32993795 original size:14 final size:14
Alignment explanation
Indices: 32993773--32993813 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
32993763 AATGAGTGAC
*
32993773 TTTTT-TATTTTTA
1 TTTTTATATTTTAA
32993786 TTTTTATATTTTAA
1 TTTTTATATTTTAA
*
32993800 TTTTTATCTTTTAA
1 TTTTTATATTTTAA
32993814 ATGTGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTATATTTTAA
Found at i:32994450 original size:5 final size:6
Alignment explanation
Indices: 32994437--32994489 Score: 70
Period size: 6 Copynumber: 8.5 Consensus size: 6
32994427 ATAATTTAAT
* *
32994437 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
32994487 AAA
1 AAA
32994490 ACATATAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Done.