Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 102 of 259
Found at i:32994530 original size:9 final size:9
Alignment explanation
Indices: 32994518--32994549 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
32994508 ATAATTTGGA
32994518 TAATTCGGT
1 TAATTCGGT
*
32994527 TAATTCGAT
1 TAATTCGGT
32994536 TAATTCGGT
1 TAATTCGGT
32994545 TAATT
1 TAATT
32994550 TTATACATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:32995129 original size:19 final size:19
Alignment explanation
Indices: 32995089--32995131 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
32995079 ATTTAAAATA
* *
32995089 AAAAAGGGAAATAAACGTG
1 AAAAAGGGAAACAAAAGTG
32995108 AAAAA-GGAAACAAAAGTAG
1 AAAAAGGGAAACAAAAGT-G
32995127 AAAAA
1 AAAAA
32995132 AAAGGGGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.67, C:0.05, G:0.21, T:0.07
Consensus pattern (19 bp):
AAAAAGGGAAACAAAAGTG
Found at i:32996540 original size:32 final size:30
Alignment explanation
Indices: 32996475--32996541 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
32996465 CTTTCAAACA
*
32996475 AAAATTTTATCAATAGTTAATAAATTTAATT
1 AAAATTTTATCAATAG-TAATAAATTAAATT
*
32996506 AAAATTTTAATCAATA-TAATAGTATTAAATT
1 AAAATTTT-ATCAATAGTAATA-AATTAAATT
*
32996537 TAAAT
1 AAAAT
32996542 ATGTACTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 5 0.16
31 19 0.61
32 7 0.23
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (30 bp):
AAAATTTTATCAATAGTAATAAATTAAATT
Found at i:33001607 original size:18 final size:18
Alignment explanation
Indices: 33001579--33001614 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
33001569 TTCATTAAAA
33001579 AATAAATTTTTTTATATTT
1 AATAAATTTTTTTA-ATTT
33001598 AATAAA-TTTTTTAATTT
1 AATAAATTTTTTTAATTT
33001615 CAAAATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
AATAAATTTTTTTAATTT
Found at i:33001658 original size:112 final size:114
Alignment explanation
Indices: 33001536--33001762 Score: 377
Period size: 112 Copynumber: 2.0 Consensus size: 114
33001526 TTTATGTTGG
33001536 TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAAT-AAATTTTTTTATATTTAA
1 TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAATCAAATTTTTTTATATTTAA
*
33001600 TA-AATTTTTTAATTTCAAAATACATAGTGACAAAAACCAAAAGATATT
66 TATAATTTTTTAATTTCAAAATACATAGTAACAAAAACCAAAAGATATT
* * *
33001648 TATCAATTTCACATTTTATCTTTAAGATAACTTTTTATTAAGACATCAAATTTTTTTATATTTAA
1 TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAATCAAATTTTTTTATATTTAA
* * *
33001713 TATATTTTTTTAATTTCAAAATACATAGTAACAAAAATCAGAAGATATT
66 TATAATTTTTTAATTTCAAAATACATAGTAACAAAAACCAAAAGATATT
33001762 T
1 T
33001763 GAAGCAACTA
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
112 43 0.41
113 20 0.19
114 43 0.41
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (114 bp):
TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAATCAAATTTTTTTATATTTAA
TATAATTTTTTAATTTCAAAATACATAGTAACAAAAACCAAAAGATATT
Found at i:33008748 original size:27 final size:27
Alignment explanation
Indices: 33008718--33008895 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
33008708 ATATCGAGTC
* *
33008718 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
33008745 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
33008772 TGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
33008800 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
33008827 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
33008854 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
33008881 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
33008896 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:33008859 original size:82 final size:81
Alignment explanation
Indices: 33008739--33008894 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
33008729 TGCTATATAA
*
33008739 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAA-TCGCA
33008804 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * * *
33008821 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCGAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATT-GCACACTTAGTGCAACATAGTCAAATCGC
*
33008884 ACCCTTAGTGC
64 ACACTTAGTGC
33008895 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33026697 original size:27 final size:27
Alignment explanation
Indices: 33026667--33026844 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
33026657 ATATCGAGTC
* *
33026667 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
33026694 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
33026721 TGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
33026749 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
33026776 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
33026803 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
33026830 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
33026845 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:33026808 original size:82 final size:81
Alignment explanation
Indices: 33026688--33026843 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
33026678 TGCTATATAA
*
33026688 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAA-TCGCA
33026753 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * * *
33026770 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCGAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATT-GCACACTTAGTGCAACATAGTCAAATCGC
*
33026833 ACCCTTAGTGC
64 ACACTTAGTGC
33026844 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33028646 original size:44 final size:44
Alignment explanation
Indices: 33028548--33028653 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 44
33028538 AACTTTAGAA
** * * *
33028548 AGACTAGACTCATAGCTTTAATATGCTTCACTGCAAGTTTAGGG
1 AGACTAGACTTGTAGCTTTAATATGCTTCACTACAACTTCAGGG
* * *
33028592 AGGCTAGACTTGTAGCTTTAATCTGCTTTACTACAACTTCAGGG
1 AGACTAGACTTGTAGCTTTAATATGCTTCACTACAACTTCAGGG
33028636 AGACTAGACTTGTAGCTT
1 AGACTAGACTTGTAGCTT
33028654 CAATTACCCC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (44 bp):
AGACTAGACTTGTAGCTTTAATATGCTTCACTACAACTTCAGGG
Found at i:33028981 original size:44 final size:45
Alignment explanation
Indices: 33028746--33029500 Score: 424
Period size: 45 Copynumber: 16.8 Consensus size: 45
33028736 TAACTTTAAC
* ** * * *
33028746 CTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGTATTTTTA-T
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-CTATCTTCAGT
* * * ** **
33028791 CCTGCTCTACTGCAACTTTAGAGAGATAAGGA-TTG-TGGCTTTGGT
1 -CTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGCTATCTTCAGT
* * * *
33028836 ATGCTCCAATGTAATTTCAGGGAG--AAGA-TCTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCTATCTTCAGT
* *
33028879 CTACTCCACTGCAACTTTAGGGAGATAAGACTTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
* * * * **
33028924 TTGCTCCATTGCAACTTCAGGAAGATAAGACTTACTA-CTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
** * * **
33028968 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TATTTTTACC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
* * * *
33029012 CTGCTCTACTGCAACTTCAGAGAGATAAGGA-TT-ATGGT-TTC-GAT
1 CTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGCT-ATCTTCAG-T
* *
33029056 TTGCTCCACTACAACTTCAGGGAGATAAGA-TCTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCTATCTTCAGT
*
33029101 ATGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
** * * *
33029146 CTGCTCCACTGCAACTTCATAGAGATAAGA-TTTCTGTATTTTTA-T
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC--TATCTTCAGT
* * * * * * *
33029191 CCTGCTCTACTGTAACTTTAGAGAGATAAGGA-TT-ATGGT-TTCAAT
1 -CTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGCT-ATCTTCAGT
* *
33029236 CTTCTCCACTACAACTTCAGGGAGATAAGA-TCTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCTATCTTCAGT
** * * * *
33029281 CTATTCTACTACAACTTTAGGGAGATAAGACTTGCTTATTTATAGCTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-----TAT--CTTCAGT
* * * * * * *
33029333 CTGTTTCACTGCAATTTCAGGGAAATGAGA-TTCTCTATCTTTAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTATCTTCAGT
* * * **
33029378 CTGCTCCACTACAACTTTAGGGAGATAAGACTT--TAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
* ** ** * *
33029421 CTGCTCCACTGCTACTTCAGGGAGATAAGGTTTAG-TGGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTATCTTCAGT
*
33029466 CTAG-TCCACTGCAACTTCAGGGAGATAAGATTTGC
1 CT-GCTCCACTGCAACTTCAGGGAGATAAGACTTGC
33029501 CATTATAACT
Statistics
Matches: 551, Mismatches: 118, Indels: 81
0.73 0.16 0.11
Matches are distributed among these distances:
41 3 0.01
42 4 0.01
43 66 0.12
44 147 0.27
45 225 0.41
46 64 0.12
47 8 0.01
50 3 0.01
51 2 0.00
52 29 0.05
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGT
Found at i:33029129 original size:222 final size:222
Alignment explanation
Indices: 33028738--33029164 Score: 662
Period size: 222 Copynumber: 1.9 Consensus size: 222
33028728 AGAATTGGTA
* * *
33028738 ACTTTAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTCTACTG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTACCCTGCTCTACTG
* * * ** *
33028803 CAACTTTAGAGAGATAAGGATTGTGGCTTTGGTATGCTCCAATGTAATTTCAGGGAGAAGATCTG
66 CAACTTCAGAGAGATAAGGATTATGGCTTTGATATGCTCCAATACAACTTCAGGGAGAAGATCTG
* * * *
33028868 CTATCTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTTGCTATCTTCAGTTTGCTCCAT
131 CTATCTTCAGTATACTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCAC
33028933 TGCAACTTCAGGAAGATAAGACTTACT
196 TGCAACTTCAGGAAGATAAGACTTACT
33028960 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG-TT-TGTATTTTTACCCTGCTCTACTG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTACCCTGCTCTACTG
* *
33029023 CAACTTCAGAGAGATAAGGATTATGG-TTTCGATTTGCTCCACTACAACTTCAGGGAGATAAGAT
66 CAACTTCAGAGAGATAAGGATTATGGCTTT-GATATGCTCCAATACAACTTCAGGGAG--AAGAT
*
33029087 CTGCTATCTTCAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTC
128 CTGCTATCTTCAGTATACTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTC
33029152 CACTGCAACTTCA
193 CACTGCAACTTCA
33029165 TAGAGATAAG
Statistics
Matches: 186, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
219 3 0.02
220 67 0.36
221 2 0.01
222 114 0.61
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (222 bp):
ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTACCCTGCTCTACTG
CAACTTCAGAGAGATAAGGATTATGGCTTTGATATGCTCCAATACAACTTCAGGGAGAAGATCTG
CTATCTTCAGTATACTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCAC
TGCAACTTCAGGAAGATAAGACTTACT
Found at i:33029248 original size:180 final size:177
Alignment explanation
Indices: 33028873--33029316 Score: 622
Period size: 180 Copynumber: 2.5 Consensus size: 177
33028863 ATCTGCTATC
* * * * * *
33028873 TTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGA-CTTGCTATCTTCAGTTTGCTCCATTGCA
1 TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATC-TGCTATCTTCAGTATGCTCCACTGCA
* * *
33028937 ACTTCAGGAAGATAAGACTTACTACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG
65 ACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTG
33029002 TATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
130 TATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
*
33029050 TTCGAT-TTGCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCA
1 TTCAATCTT-CTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCA
** * *
33029114 ACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCATAGAGATAAGATTT
65 ACTTCAGGGAGATAAGACTTGCTA-CTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAG-GTT
* * *
33029179 CTGTATTTTTATCCTGCTCTACTGTAACTTTAGAGAGATAAGGATTATGGT
128 -TGTATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
* ** * *
33029230 TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTCTATTCTACTACAA
1 TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCAA
*
33029295 CTTTAGGGAGATAAGACTTGCT
66 CTTCAGGGAGATAAGACTTGCT
33029317 TATTTATAGC
Statistics
Matches: 237, Mismatches: 24, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
176 1 0.00
177 75 0.32
178 33 0.14
179 2 0.01
180 124 0.52
181 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (177 bp):
TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCAA
CTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGT
ATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
Found at i:33030033 original size:46 final size:46
Alignment explanation
Indices: 33029901--33030037 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
33029891 TGTGGTTTCT
* * *
33029901 TCCATCCCACTGCAACTCAAGGGTATAAGATTTGTACCATCTTCAA
1 TCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCTTCTTCAA
* * *
33029947 TCCATCCCACTGCAGCTCAGGGGTATAGGACTTGTATCTTCTTCAA
1 TCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCTTCTTCAA
*
33029993 TCCATCCCACTGCAACTCAAGGGTATAGGATTTGTGTCTTCTTCA
1 TCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCTTCTTCA
33030038 CTCAATTTGA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (46 bp):
TCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCTTCTTCAA
Found at i:33032220 original size:93 final size:94
Alignment explanation
Indices: 33032060--33032248 Score: 344
Period size: 93 Copynumber: 2.0 Consensus size: 94
33032050 TATCACAATA
* *
33032060 TATCGTGGTACCAGGGGCGATCATCTTTTTCTTCATCTTCTTCGGTATTGTAACAGTGAGCCAAA
1 TATCGTGGTACCAGGGGCGATCATCATTTTCTTCATCTTCTTCGGTATTGTAACAGTAAGCCAAA
33032125 ATTTCTTAAATGCTCACCTGGATGGGTTT
66 ATTTCTTAAATGCTCACCTGGATGGGTTT
*
33032154 TATCGTGGTACCAGGGGTGATCAT-ATTTTCTTCATCTTCTTCGGTATTGTAACAGTAAGCCAAA
1 TATCGTGGTACCAGGGGCGATCATCATTTTCTTCATCTTCTTCGGTATTGTAACAGTAAGCCAAA
33032218 ATTTCTTAAATGCTCACCTGGATGGGTTT
66 ATTTCTTAAATGCTCACCTGGATGGGTTT
33032247 TA
1 TA
33032249 CATCTTCTTG
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
93 69 0.75
94 23 0.25
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.38
Consensus pattern (94 bp):
TATCGTGGTACCAGGGGCGATCATCATTTTCTTCATCTTCTTCGGTATTGTAACAGTAAGCCAAA
ATTTCTTAAATGCTCACCTGGATGGGTTT
Found at i:33038920 original size:40 final size:40
Alignment explanation
Indices: 33038890--33039059 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
33038880 GGACTAAGAT
* *
33038890 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
33038930 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
33038970 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * * *
33039010 CCGGAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
33039049 CCGAAGGCATT
1 CCGAAGGCATT
33039060 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:33038986 original size:80 final size:79
Alignment explanation
Indices: 33038844--33039059 Score: 227
Period size: 80 Copynumber: 2.7 Consensus size: 79
33038834 CTGTCAGGGC
* * * * * * * * *
33038844 TAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGA
1 TAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATTCGTGCGA
33038908 GATACTAAATCCGGGT
64 GATACTAAATCCGGGT
* * *
33038924 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAG
* **
33038989 TTGTTAAATCCGGGT
65 ATACTAAATCCGGGT
* * * *
33039004 TATGTCCCGGAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
33039060 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
79 35 0.30
80 76 0.66
81 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGA
TACTAAATCCGGGT
Found at i:33039079 original size:79 final size:80
Alignment explanation
Indices: 33038912--33039094 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
33038902 GTGCGAGATA
* * *
33038912 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
33038977 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
33038992 TTAAATCCGGGTTATGTCCCGGAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
33039056 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
33039071 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
33039095 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 13 0.15
79 46 0.54
80 26 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:33043677 original size:34 final size:36
Alignment explanation
Indices: 33043634--33043706 Score: 132
Period size: 34 Copynumber: 2.1 Consensus size: 36
33043624 TTGAAAGATT
33043634 ACGAGCTTGTCATTGATTACCA-CCGGG-AAGGCTA
1 ACGAGCTTGTCATTGATTACCACCCGGGAAAGGCTA
33043668 ACGAGCTTGTCATTGATTACCACCCGGGAAAGGCTA
1 ACGAGCTTGTCATTGATTACCACCCGGGAAAGGCTA
33043704 ACG
1 ACG
33043707 TGGTTGCGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 22 0.59
35 5 0.14
36 10 0.27
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (36 bp):
ACGAGCTTGTCATTGATTACCACCCGGGAAAGGCTA
Found at i:33046977 original size:39 final size:40
Alignment explanation
Indices: 33046773--33046995 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
33046763 TTGAATGCTG
* * * * * *
33046773 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
33046813 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
33046853 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
33046893 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
33046933 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
33046972 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33046996 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:33047015 original size:79 final size:80
Alignment explanation
Indices: 33046848--33047030 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
33046838 GTGCGAGATA
* * *
33046848 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
33046913 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
33046928 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
33046992 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
33047007 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
33047031 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:33053496 original size:18 final size:20
Alignment explanation
Indices: 33053459--33053498 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
33053449 AATTCTAGAA
33053459 AATGAATAATGAATAAATTAC
1 AATGAATAA-GAATAAATTAC
33053480 AATGAATAA-AA-AAATTAC
1 AATGAATAAGAATAAATTAC
33053498 A
1 A
33053499 TAAACTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 2 0.11
21 9 0.47
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (20 bp):
AATGAATAAGAATAAATTAC
Found at i:33056440 original size:112 final size:114
Alignment explanation
Indices: 33056313--33056539 Score: 359
Period size: 112 Copynumber: 2.0 Consensus size: 114
33056303 TTTATGTTGG
**
33056313 TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAAT-AATTTTTTTTATATTTAA
1 TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAATCAAAATTTTTTATATTTAA
* * *
33056377 TATA-TTCTTTAATTTTAAAATGCATAGTGACAAAAACCAGAAGATATT
66 TATATTTCTTTAATTTCAAAATACATAGTAACAAAAACCAGAAGATATT
* *
33056425 TATCAATTTCACATTTTATCTTTAAGATAACTTTTTATTAAGAAATCAAAATTTTTTATATTTAA
1 TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAATCAAAATTTTTTATATTTAA
* *
33056490 TATATTTTTTTAATTTCAAAATACATAGTAACAAAAATCAGAAGATATT
66 TATATTTCTTTAATTTCAAAATACATAGTAACAAAAACCAGAAGATATT
33056539 T
1 T
33056540 GAAGCAACTA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
112 44 0.42
113 20 0.19
114 40 0.38
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (114 bp):
TATCAATTTCACATTTTATCTTTAAGATAACTTTTCATTAAAAAATCAAAATTTTTTATATTTAA
TATATTTCTTTAATTTCAAAATACATAGTAACAAAAACCAGAAGATATT
Found at i:33060226 original size:13 final size:13
Alignment explanation
Indices: 33060208--33060233 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33060198 AGAATTTTGT
33060208 ATATCTGAATCTG
1 ATATCTGAATCTG
33060221 ATATCTGAATCTG
1 ATATCTGAATCTG
33060234 GATCTGTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
ATATCTGAATCTG
Found at i:33066118 original size:55 final size:56
Alignment explanation
Indices: 33066059--33066177 Score: 152
Period size: 56 Copynumber: 2.1 Consensus size: 56
33066049 GTGTCCAACA
* * *
33066059 CTGACTT-TAGGACACGGCCATGACGCACG-CCTGTGTGGCCTACCCGTGGACAATG
1 CTGACTTATA-GACACGGCCATGACACACGCCCCGTGTAGCCTACCCGTGGACAATG
* * *
33066114 CTGACTTATAGACACGGCTATGGCACACGCCCCGTGTAGCCTACCCGTGGACAATA
1 CTGACTTATAGACACGGCCATGACACACGCCCCGTGTAGCCTACCCGTGGACAATG
*
33066170 CTAACTTA
1 CTGACTTA
33066178 AAAGTTTAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
55 23 0.42
56 32 0.58
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (56 bp):
CTGACTTATAGACACGGCCATGACACACGCCCCGTGTAGCCTACCCGTGGACAATG
Found at i:33068530 original size:16 final size:16
Alignment explanation
Indices: 33068509--33068551 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
33068499 GTAGATCAGC
33068509 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
33068525 AAAAGCCAAAATGCTG
1 AAAAGCCGAAATGCCG
*
33068541 AAAAGCTGAAA
1 AAAAGCCGAAA
33068552 GTTTGACTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:33068845 original size:28 final size:28
Alignment explanation
Indices: 33068763--33068852 Score: 144
Period size: 29 Copynumber: 3.1 Consensus size: 28
33068753 TGAGCAAGAC
33068763 TATAAATGTGAATTGGGCCTAATGGGCCA
1 TATAAATGTG-ATTGGGCCTAATGGGCCA
*
33068792 TATAAATATGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
*
33068821 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAATGGGCCA
33068849 TATA
1 TATA
33068853 CAGGTATGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Found at i:33071967 original size:29 final size:29
Alignment explanation
Indices: 33071928--33072006 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
33071918 CTTAATAATC
*
33071928 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
33071958 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
33071987 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33072007 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:33074065 original size:20 final size:20
Alignment explanation
Indices: 33074040--33074082 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
33074030 ATTTTGATAA
*
33074040 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
33074060 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
33074080 ACA
1 ACA
33074083 CGAGATGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:33074090 original size:20 final size:20
Alignment explanation
Indices: 33074047--33074090 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
33074037 TAAACATGAT
*
33074047 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACACGAC
*
33074067 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAC
33074087 ATGT
1 ATGT
33074091 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (20 bp):
ATGTATGATATGCACACGAC
Found at i:33074191 original size:23 final size:24
Alignment explanation
Indices: 33074136--33074255 Score: 147
Period size: 24 Copynumber: 5.0 Consensus size: 24
33074126 GAGGAAGTGC
33074136 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
33074160 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
33074184 -AAAGGGCTTATGCCCCAGCTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
33074207 AAAGAAGGGCTT-TGCCCTAGTTATT
1 -AA-AAGGGCTTATGCCCCAGTTATT
*
33074232 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
33074256 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
23 25 0.30
24 31 0.37
25 19 0.23
26 8 0.10
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:33074207 original size:47 final size:48
Alignment explanation
Indices: 33074137--33074234 Score: 164
Period size: 47 Copynumber: 2.1 Consensus size: 48
33074127 AGGAAGTGCA
*
33074137 AAAGGGCTTATGCCCCAGTTATT-AA-AAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGCTATTAAAGAAGGGCTT-TGCCCTAGTTATT
33074184 AAAGGGCTTATGCCCCAGCTATTAAAGAAGGGCTTTGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGCTATTAAAGAAGGGCTTTGCCCTAGTTATT
33074232 AAA
1 AAA
33074235 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 22 0.46
48 18 0.38
49 8 0.17
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGCTATTAAAGAAGGGCTTTGCCCTAGTTATT
Found at i:33074255 original size:25 final size:23
Alignment explanation
Indices: 33074137--33074234 Score: 126
Period size: 23 Copynumber: 4.1 Consensus size: 23
33074127 AGGAAGTGCA
33074137 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
33074160 AAAAGGGCTTATGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
33074184 AAAGGGCTTATGCCCCAGCTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
33074207 AAAGAAGGGCTT-TGCCCTAGTTATT
1 --A-AAGGGCTTATGCCCCAGTTATT
33074232 AAA
1 AAA
33074235 AGAGGCTAGG
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
22 2 0.03
23 22 0.33
24 22 0.33
25 12 0.18
26 8 0.12
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:33074486 original size:31 final size:31
Alignment explanation
Indices: 33074448--33074511 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
33074438 CGTTTACAGT
33074448 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* ** *
33074479 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
33074510 AA
1 AA
33074512 TATGAAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:33082116 original size:9 final size:9
Alignment explanation
Indices: 33082104--33082160 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
33082094 TTTGATAAAC
33082104 ATGATATGT
1 ATGATATGT
*
33082113 ATGATATGCAC
1 ATGATATG--T
*
33082124 ATGACATGT
1 ATGATATGT
*
33082133 ATGATATGCAC
1 ATGATATG--T
33082144 ATGATATGT
1 ATGATATGT
33082153 ATGATATG
1 ATGATATG
33082161 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:33082127 original size:20 final size:20
Alignment explanation
Indices: 33082102--33082164 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
33082092 ATTTTGATAA
33082102 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
33082122 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
33082142 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33082162 ACA
1 ACA
33082165 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:33082245 original size:24 final size:24
Alignment explanation
Indices: 33082218--33082300 Score: 132
Period size: 24 Copynumber: 3.4 Consensus size: 24
33082208 GAGGAAGTGC
33082218 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33082242 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33082266 AAAGAAGGGCTT-TGCCCCAGTTATT
1 -AA-AAGGGCTTATGCCCCAGTTATT
33082291 AAAAGAGGCT
1 AAAAG-GGCT
33082301 AGCCCTCCAG
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
23 3 0.05
24 30 0.54
25 15 0.27
26 8 0.14
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:33082310 original size:25 final size:24
Alignment explanation
Indices: 33082218--33082314 Score: 103
Period size: 24 Copynumber: 4.0 Consensus size: 24
33082208 GAGGAAGTGC
33082218 AAAAG-GGCTTATGCCCCAGTTATT
1 AAAAGAGGCTTA-GCCCCAGTTATT
33082242 AAAAG-GGCTTATGCCCCAGTTATT
1 AAAAGAGGCTTA-GCCCCAGTTATT
*
33082266 -AAAGAAGGGCTTTGCCCCAGTTATT
1 AAAAG-A-GGCTTAGCCCCAGTTATT
33082291 AAAAGAGGC-TAGCCCTCCAGTTAT
1 AAAAGAGGCTTAG-CC-CCAGTTAT
33082315 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 2, Indels: 11
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.09
24 29 0.45
25 21 0.32
26 9 0.14
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGAGGCTTAGCCCCAGTTATT
Found at i:33082542 original size:31 final size:31
Alignment explanation
Indices: 33082507--33082570 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
33082497 CGTTTACAGT
33082507 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
33082538 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
33082569 AA
1 AA
33082571 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:33084773 original size:49 final size:50
Alignment explanation
Indices: 33084716--33084846 Score: 146
Period size: 49 Copynumber: 2.7 Consensus size: 50
33084706 GTTAAGTTGT
* *
33084716 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-T-TCATCGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTGT-AT-AAGTGC
* * * *
33084765 CGATGCCATTTCCTAGACATGGTATTACACTAGCTTTCGTGTATAAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTGTATAAGTGC
*
33084815 TGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC
33084847 ATGAAGCTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
48 12 0.17
49 47 0.68
50 9 0.13
51 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTGTATAAGTGC
Found at i:33093390 original size:43 final size:43
Alignment explanation
Indices: 33093336--33093420 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
33093326 CTTCTTTGTG
* *
33093336 CCAATTTCCATTCTTCTTCTACTTCATTGCTGACTTTTCTTTA
1 CCAATTTCCATTCTTCCTCTACTTCATTGCCGACTTTTCTTTA
33093379 CCAATTTCCATTCTTCCTCTACTTCATTGCCGACTTTTCTTT
1 CCAATTTCCATTCTTCCTCTACTTCATTGCCGACTTTTCTTT
33093421 CTTTTTCCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.15, C:0.31, G:0.05, T:0.49
Consensus pattern (43 bp):
CCAATTTCCATTCTTCCTCTACTTCATTGCCGACTTTTCTTTA
Found at i:33095060 original size:21 final size:18
Alignment explanation
Indices: 33095034--33095086 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 18
33095024 CACATGTATA
33095034 AATAATAAATAAGTATTATTT
1 AATAATAAATAA-TATTA--T
33095055 AATAATAATATAATATTAT
1 AATAATAA-ATAATATTAT
33095074 AATAGATAAATAA
1 AATA-ATAAATAA
33095087 AGAAACAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 9 0.30
20 4 0.13
21 13 0.43
22 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
AATAATAAATAATATTAT
Found at i:33095109 original size:15 final size:15
Alignment explanation
Indices: 33095089--33095118 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33095079 ATAAATAAAG
33095089 AAACAAAAGAAAGAA
1 AAACAAAAGAAAGAA
*
33095104 AAACAATAGAAAGAA
1 AAACAAAAGAAAGAA
33095119 TAGAACATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.13, T:0.03
Consensus pattern (15 bp):
AAACAAAAGAAAGAA
Found at i:33095158 original size:11 final size:11
Alignment explanation
Indices: 33095144--33095169 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33095134 AAATGGGGAG
33095144 AAAGAAAAGAA
1 AAAGAAAAGAA
33095155 AAAGAAAAGAA
1 AAAGAAAAGAA
33095166 AAAG
1 AAAG
33095170 GGAAAACTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:33095793 original size:3 final size:3
Alignment explanation
Indices: 33095785--33095821 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
33095775 ATGGTAAGTT
33095785 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
33095822 GGTATTGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:33099005 original size:3 final size:3
Alignment explanation
Indices: 33098997--33099023 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33098987 AGATGTTTTA
33098997 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
33099024 TAGTATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:33100476 original size:45 final size:44
Alignment explanation
Indices: 33100310--33100482 Score: 188
Period size: 45 Copynumber: 3.8 Consensus size: 44
33100300 ATGGTTGAGC
33100310 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * * *
33100354 ATGTCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGA
*
33100403 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
33100447 ACCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 A-TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33100483 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 33 0.31
46 31 0.30
47 30 0.29
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:33102147 original size:8 final size:8
Alignment explanation
Indices: 33102134--33102167 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
33102124 CTCAGGTGAA
33102134 GGCGCATG
1 GGCGCATG
33102142 GGCGCATG
1 GGCGCATG
33102150 GGCGCATG
1 GGCGCATG
33102158 GGCGCATG
1 GGCGCATG
33102166 GG
1 GG
33102168 TGGACGAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.12, C:0.24, G:0.53, T:0.12
Consensus pattern (8 bp):
GGCGCATG
Found at i:33107503 original size:21 final size:21
Alignment explanation
Indices: 33107477--33107516 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
33107467 CACATGTATA
33107477 AATAATAA-ATAAGTATTATTT
1 AATAATAATATAA-TATTATTT
33107498 AATAATAATATAATATTAT
1 AATAATAATATAATATTAT
33107517 AATAGTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
AATAATAATATAATATTATTT
Found at i:33107607 original size:11 final size:11
Alignment explanation
Indices: 33107593--33107626 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
33107583 TGAAAATGGG
33107593 GAGAAAGAAAA
1 GAGAAAGAAAA
33107604 GAGAAAGAAAA
1 GAGAAAGAAAA
*
33107615 GAAAAAGGAAAA
1 GAGAAA-GAAAA
33107627 ACTAGGGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
GAGAAAGAAAA
Found at i:33108244 original size:3 final size:3
Alignment explanation
Indices: 33108236--33108262 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33108226 GAATGGTAAG
33108236 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
33108263 GGTATTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:33109181 original size:24 final size:24
Alignment explanation
Indices: 33109154--33109205 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
33109144 TAATGAAGAG
*
33109154 TAAATGGTTGAAGTATTAAGACTC
1 TAAATGGTTGAAGTATGAAGACTC
33109178 TAAATGGTTGAAGTATGAAGACTC
1 TAAATGGTTGAAGTATGAAGACTC
33109202 TAAA
1 TAAA
33109206 GTAATGCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (24 bp):
TAAATGGTTGAAGTATGAAGACTC
Found at i:33110368 original size:26 final size:27
Alignment explanation
Indices: 33110339--33110390 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
33110329 AAAACCGTAA
* * *
33110339 TAAGGG-AAAATTTACCGAAATACCCC
1 TAAGGGCAAAAATGACCAAAATACCCC
33110365 TAAGGGCAAAAATGACCAAAATACCC
1 TAAGGGCAAAAATGACCAAAATACCC
33110391 TTATGTGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (27 bp):
TAAGGGCAAAAATGACCAAAATACCCC
Found at i:33114338 original size:28 final size:27
Alignment explanation
Indices: 33114306--33114404 Score: 103
Period size: 27 Copynumber: 3.6 Consensus size: 27
33114296 TTAGAATACT
*
33114306 TTAGTTTACTAAAATTACTGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
* *
33114334 TTAGTTTGTAAAAATACCGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
33114361 -TCGATTTGTAAAATTACTGAAATA-CC
1 TTAG-TTTGTAAAATTACTGAAATACCC
* *
33114387 TTCGACTTGTAAAATTAC
1 TTAG-TTTGTAAAATTAC
33114405 CAAAGTACCC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.06
27 51 0.82
28 7 0.11
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:33114413 original size:27 final size:26
Alignment explanation
Indices: 33114339--33114414 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
33114329 TACCCTTAGT
* *
33114339 TTGTAAAAATACCGAAATACCCTCGAT
1 TTGTAAAATTACC-AAATACCCTCGAC
* *
33114366 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAC
33114393 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAA-TACCC
33114415 CTGATTTACA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAC
Found at i:33114430 original size:54 final size:54
Alignment explanation
Indices: 33114310--33114431 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 54
33114300 AATACTTTAG
*
33114310 TTTACTAAAATTACTGAAATACCCTTAGTTTGTAAAAATACCGAAATACCCTCGA
1 TTTAC-AAAATTACTGAAATACCCTTAGCTTGTAAAAATACCGAAATACCCTCGA
** * *
33114365 TTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACC-AAAGTACCC-CTGA
1 TTTACAAAATTACTGAAATACCCTTAG-CTTGTAAAAATACCGAAA-TACCCTC-GA
*
33114419 TTTACAGAATTAC
1 TTTACAAAATTAC
33114432 CGTTTTACCC
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
53 9 0.16
54 44 0.79
55 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TTTACAAAATTACTGAAATACCCTTAGCTTGTAAAAATACCGAAATACCCTCGA
Found at i:33114441 original size:81 final size:81
Alignment explanation
Indices: 33114356--33114748 Score: 265
Period size: 81 Copynumber: 4.9 Consensus size: 81
33114346 AATACCGAAA
* * * *
33114356 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCTGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCCTGATT
*
33114421 TACAGAATTACCGTTT
66 TACAGAATTACCATTT
* * * *** ** * * ***
33114437 TACCCCCGATTTACATAATTACCGTTTTACC-TCTGATTTACATAATTATCATTTTA-CCCTCGA
1 TACCCTCGATTTATAAAATTACCGAAATACCTTC-GATTTGTAAAATTACCAAAATACCCCT-GA
*
33114500 TTTACAGAATTACCGTTT
64 TTTACAGAATTACCATTT
* * *** * * * * *** *
33114518 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCCTGATT
*
33114583 TACAGAATTACTATTT
66 TACAGAATTACCATTT
* * * ** * *
33114599 TATCATCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCCTAGT
1 TACCCTCGATTTATAAAATTACCGAAATA-CCTTCGATTTGTAAAATTACCAAAATACCCCT-GA
***
33114663 TTGTA-A-AATTACCAAAA
64 TT-TACAGAATTACCATTT
* * * * * *
33114680 TACCCTTGGTTTGTGAAATTACCGAAATACCTTCAATTTGTAAAATTACCAAAATACCCTTGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCCTGATT
33114745 TACA
66 TACA
33114749 AAGTTACATA
Statistics
Matches: 239, Mismatches: 64, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
79 2 0.01
80 14 0.06
81 208 0.87
82 13 0.05
83 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCCTGATT
TACAGAATTACCATTT
Found at i:33114594 original size:27 final size:27
Alignment explanation
Indices: 33114413--33114620 Score: 240
Period size: 27 Copynumber: 7.7 Consensus size: 27
33114403 ACCAAAGTAC
*
33114413 CCCT-GATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
33114439 CCCCCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
33114466 -CCTCTGATTTACATAATTATCATTTTA
1 CCCTC-GATTTACAGAATTACCATTTTA
*
33114493 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
33114520 CCCTTGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
33114547 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
33114574 CCCTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
33114601 TCATCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
33114621 TAAAATACCC
Statistics
Matches: 160, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.04
27 150 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:33114643 original size:27 final size:27
Alignment explanation
Indices: 33114613--33114850 Score: 207
Period size: 27 Copynumber: 8.7 Consensus size: 27
33114603 ATCGATTTAC
*
33114613 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
33114640 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
33114667 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
33114694 GAAATTACCGAAATA-CCTTCAATTTGT
1 AAAATTACCAAAATACCCTT-AGTTTGT
*
33114721 AAAATTACCAAAATACCCTT-GATT-T
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
33114746 ACAAAGTTA-CATAAATACCCTTGACTTTCT
1 A-AAA-TTACCA-AAATACCCTT-AGTTTGT
* * * **
33114776 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACCA-AAATACCCTTAGTTTGT
**
33114804 AAAATTACTGAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
33114831 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
33114851 GTAGGATGAA
Statistics
Matches: 170, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.01
26 11 0.06
27 129 0.76
28 8 0.05
29 15 0.09
30 4 0.02
31 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:33114946 original size:27 final size:27
Alignment explanation
Indices: 33114869--33114946 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
33114859 AAATGACTAA
* *
33114869 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
33114896 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
33114923 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
33114947 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:33116121 original size:25 final size:25
Alignment explanation
Indices: 33116092--33116139 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33116082 TTATAATATG
* * *
33116092 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
33116117 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
33116140 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:33116206 original size:20 final size:20
Alignment explanation
Indices: 33116183--33116246 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
33116173 TAAACATAAT
33116183 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
33116203 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
33116223 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
33116243 ATGT
1 ATGT
33116247 TCATAAATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:33116223 original size:11 final size:11
Alignment explanation
Indices: 33116187--33116241 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
33116177 CATAATATGT
33116187 ATGATATGCAC
1 ATGATATGCAC
* *
33116198 ATGACATG--T
1 ATGATATGCAC
33116207 ATGATATGCAC
1 ATGATATGCAC
*
33116218 ATGATATG--T
1 ATGATATGCAC
33116227 ATGATATGCAC
1 ATGATATGCAC
33116238 ATGA
1 ATGA
33116242 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:33116351 original size:25 final size:24
Alignment explanation
Indices: 33116293--33116438 Score: 181
Period size: 25 Copynumber: 6.0 Consensus size: 24
33116283 AGGAAGTGCA
33116293 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
33116316 AAAGGGTTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
33116341 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
33116366 AAAGGGTTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
33116390 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
33116414 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
33116439 GATAAATCAG
Statistics
Matches: 109, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
23 21 0.19
24 30 0.28
25 58 0.53
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:33116437 original size:49 final size:47
Alignment explanation
Indices: 33116292--33116417 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 47
33116282 GAGGAAGTGC
*
33116292 AAAAGGGCTTATGCCCCAGTTATTAAAGGGTTTATGCCCCAGTTATGA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGTTTATGCCCCAGTTAT-A
*
33116340 TAAAGGGCTTATGCCCCAGTTATGATAAAGGGTTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTAT-A-AAAGGGTTTATGCCCCAGTTATA
*
33116389 AAAAGGGCTTTTGCCCCAGTTACTAAAAG
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG
33116418 AGGCTAGGCC
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
48 26 0.37
49 22 0.31
50 23 0.32
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGTTTATGCCCCAGTTATA
Found at i:33116667 original size:31 final size:31
Alignment explanation
Indices: 33116632--33116692 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
33116622 TTTACAGTAA
*
33116632 AGGCTTCGGCCCAGTAATATGAAATTTGAAG
1 AGGCTTCGGCCCAGTAATATGAAATATGAAG
**
33116663 AGGCTTCGGCCCAGTGTTATGAAATATGAA
1 AGGCTTCGGCCCAGTAATATGAAATATGAA
33116693 ATATGAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (31 bp):
AGGCTTCGGCCCAGTAATATGAAATATGAAG
Found at i:33120768 original size:26 final size:26
Alignment explanation
Indices: 33120731--33120814 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
33120721 TGATACAAAT
* *
33120731 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33120757 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33120783 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33120809 TGATAA
1 TGATAA
33120815 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:33122328 original size:26 final size:26
Alignment explanation
Indices: 33122299--33122351 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33122289 TTTACAGTTT
33122299 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
33122325 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
33122351 T
1 T
33122352 GCATATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:33122844 original size:137 final size:136
Alignment explanation
Indices: 33122599--33122884 Score: 536
Period size: 137 Copynumber: 2.1 Consensus size: 136
33122589 GAGTAGTCTC
*
33122599 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
33122664 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
33122729 CTGTTA
131 CTGTTA
33122735 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
33122800 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
33122865 ACTGTTA
130 ACTGTTA
**
33122872 CCTGAATGGGCTT
1 CCCAAATGGGCTT
33122885 AGGCGTAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 20 0.14
137 126 0.86
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:33126585 original size:26 final size:26
Alignment explanation
Indices: 33126548--33126631 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
33126538 TGATACAAAT
* *
33126548 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33126574 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33126600 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33126626 TGATAA
1 TGATAA
33126632 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:33128143 original size:26 final size:26
Alignment explanation
Indices: 33128114--33128166 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33128104 TTTACAGTTT
*
33128114 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
33128140 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
33128166 T
1 T
33128167 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:33128659 original size:137 final size:136
Alignment explanation
Indices: 33128414--33128699 Score: 518
Period size: 137 Copynumber: 2.1 Consensus size: 136
33128404 GAGTAGTCTC
* *
33128414 CCCAAATGGGCTTGCGTATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
33128479 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGAGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGAGCTCTGGCCCAGTACCA
33128544 CTGTTA
131 CTGTTA
33128550 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
33128615 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGAGCTCTGGCCCAGTACC
33128680 ACTGTTA
130 ACTGTTA
**
33128687 CCTGAATGGGCTT
1 CCCAAATGGGCTT
33128700 AGGCCCAAGA
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 19 0.13
137 125 0.87
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGAGCTCTGGCCCAGTACCA
CTGTTA
Found at i:33129803 original size:23 final size:23
Alignment explanation
Indices: 33129759--33129817 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
33129749 CCAATAGGAG
*
33129759 ACTTCTGTT-TTAGTCATACAGT
1 ACTTCTGTTATTAGTAATACAGT
* *
33129781 ACTTTTGTTATTAGTAATTCAGT
1 ACTTCTGTTATTAGTAATACAGT
*
33129804 ACTTCTATTATTAG
1 ACTTCTGTTATTAG
33129818 CACTTTGGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 8 0.26
23 23 0.74
ACGTcount: A:0.25, C:0.14, G:0.12, T:0.49
Consensus pattern (23 bp):
ACTTCTGTTATTAGTAATACAGT
Found at i:33130940 original size:17 final size:18
Alignment explanation
Indices: 33130902--33130943 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
33130892 TTGTCATATG
*
33130902 AATTAAATTAATTATTAT
1 AATTAAATTAATTATGAT
*
33130920 -ATTAATTTAATT-TGAT
1 AATTAAATTAATTATGAT
33130936 AATTAAAT
1 AATTAAAT
33130944 ATTGTGCACT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
AATTAAATTAATTATGAT
Found at i:33134539 original size:48 final size:49
Alignment explanation
Indices: 33134468--33134569 Score: 145
Period size: 48 Copynumber: 2.1 Consensus size: 49
33134458 CATTCCAGGA
* * * *
33134468 GTAAATAAGTTTTAATGAGTGAAAACACGC-AATATGTTAT-TTGAATTG
1 GTAAATAAGTTTTAATAAGTGAAAACACCCTAAAATGTTATGCT-AATTG
33134516 GTAAATAAGTTTTAATAAGTGAAAACACCCTAAAATGTTATGCTAATTG
1 GTAAATAAGTTTTAATAAGTGAAAACACCCTAAAATGTTATGCTAATTG
33134565 GTAAA
1 GTAAA
33134570 GTCGATCATG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
48 28 0.58
49 19 0.40
50 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (49 bp):
GTAAATAAGTTTTAATAAGTGAAAACACCCTAAAATGTTATGCTAATTG
Found at i:33137527 original size:28 final size:28
Alignment explanation
Indices: 33137495--33137591 Score: 104
Period size: 28 Copynumber: 3.5 Consensus size: 28
33137485 ATTTGTCACG
* * *
33137495 AAGGCTTCCATTTTCTTCGATCACCACA
1 AAGGCTTCCATTGTCATAGATCACCACA
**
33137523 AAGGCTTCCATTGTCATAGATTGCCACA
1 AAGGCTTCCATTGTCATAGATCACCACA
* * ** *
33137551 AAGGCTTCAATGGTCATAGATTGCTACA
1 AAGGCTTCCATTGTCATAGATCACCACA
33137579 AAGGCTTCCATTG
1 AAGGCTTCCATTG
33137592 CCTGTCGTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (28 bp):
AAGGCTTCCATTGTCATAGATCACCACA
Found at i:33140891 original size:119 final size:120
Alignment explanation
Indices: 33140709--33140931 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
33140699 TCCTCGTTCA
* *
33140709 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* * *
33140774 TTAGTAAC-TCGCACAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAA-AGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
33140829 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * *
33140891 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
33140932 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 65 0.74
120 19 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:33140931 original size:40 final size:40
Alignment explanation
Indices: 33140707--33140931 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
33140697 GCTCCTCGTT
* *
33140707 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
33140747 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
33140787 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
33140827 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
33140866 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
33140907 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33140932 CATCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 116 0.73
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:33146074 original size:39 final size:40
Alignment explanation
Indices: 33145905--33146129 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
33145895 GCTCCTCGTT
* *
33145905 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
33145945 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
33145985 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
33146025 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
33146064 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
33146105 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33146130 CATCATTCAA
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 113 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33146089 original size:79 final size:80
Alignment explanation
Indices: 33145905--33146126 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 80
33145895 GCTCCTCGTT
* * * * * * * *
33145905 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATACCTTCGGGACTTAACCCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCAG
*
33145970 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * *
33145985 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACCAATGCCTTCGGG-CTTAGCCCAG
1 CAAATACCTTCGGGACTTAACCCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCAG
*
33146049 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
** * * *
33146064 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
1 CAAATACCTTCGGGA-CTTAACCCGGATATAGTAACTT-GCACCAATGCCTTCGGGACTTAGCCC
33146127 GGACATCATT
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
78 3 0.03
79 59 0.49
80 58 0.48
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATACCTTCGGGACTTAACCCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCAG
AATTAGTAACTCGCA
Found at i:33146089 original size:119 final size:120
Alignment explanation
Indices: 33145907--33146129 Score: 274
Period size: 119 Copynumber: 1.9 Consensus size: 120
33145897 TCCTCGTTCA
** *
33145907 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* * *
33145972 TTAGTAAC-TCGCACAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACC
66 ATAGTAACTTAGCACAA-AGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACC
* * **
33146027 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * *
33146089 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
33146130 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 63 0.72
120 21 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACC
Found at i:33151871 original size:28 final size:28
Alignment explanation
Indices: 33151835--33151913 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
33151825 GAATCATTCG
33151835 ATATTTCACACACTAAGTGCCATTCTCA
1 ATATTTCACACACTAAGTGCCATTCTCA
* * **
33151863 ATATCTCACATACTAAGTTTCATTCTCA
1 ATATTTCACACACTAAGTGCCATTCTCA
**
33151891 ATATTTTGCACACTAAGTGCCAT
1 ATATTTCACACACTAAGTGCCAT
33151914 ATTTGATGTC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (28 bp):
ATATTTCACACACTAAGTGCCATTCTCA
Found at i:33155377 original size:30 final size:29
Alignment explanation
Indices: 33155341--33155404 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
33155331 ATGAATCGGA
33155341 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
*
33155371 AGCTTTGGCACTAAGTGTGCTATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
33155400 AGCTT
1 AGCTT
33155405 CGGCTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:33162749 original size:30 final size:29
Alignment explanation
Indices: 33162715--33162782 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 29
33162705 ATGAATCAGA
**
33162715 AGCTTTGGCACTAAGTGTGTGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCAATTT-AACT
33162745 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTGGCACTAAGTGTGCAATTTAACT
33162774 AGCTTTGGC
1 AGCTTTGGC
33162783 TACTTGAGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 13 0.36
30 23 0.64
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCAATTTAACT
Found at i:33166328 original size:72 final size:72
Alignment explanation
Indices: 33166206--33166340 Score: 243
Period size: 72 Copynumber: 1.9 Consensus size: 72
33166196 AGTGCACTCG
* *
33166206 GAAGGTAAATTTATCTTTCTTACCGATTTCTTTATTTTAGAATGTGAAGCTGAACAAGATGTGTT
1 GAAGATAAATTTATCTTTCTTACCGATTTCTTTATTTTAGAATGTGAAGCTAAACAAGATGTGTT
33166271 AGTAAGA
66 AGTAAGA
*
33166278 GAAGATAAATTTATCTTTCTTACTGATTTCTTTATTTTAGAATGTGAAGCTAAACAAGATGTG
1 GAAGATAAATTTATCTTTCTTACCGATTTCTTTATTTTAGAATGTGAAGCTAAACAAGATGTG
33166341 CCAATTATTC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (72 bp):
GAAGATAAATTTATCTTTCTTACCGATTTCTTTATTTTAGAATGTGAAGCTAAACAAGATGTGTT
AGTAAGA
Found at i:33188883 original size:43 final size:43
Alignment explanation
Indices: 33188834--33188928 Score: 133
Period size: 43 Copynumber: 2.2 Consensus size: 43
33188824 TACTACATAG
33188834 GGTCTTACACG-AA-ATCAATTA-ATGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATATCAA-TACA--ATGCCAATGTCCCAGACAT
*
33188877 GGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATATCAATACAATGCCAATGTCCCAGACAT
33188920 GGTCTTACA
1 GGTCTTACA
33188929 TATAATCCGA
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
43 39 0.81
44 4 0.08
45 5 0.10
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATATCAATACAATGCCAATGTCCCAGACAT
Found at i:33203631 original size:198 final size:197
Alignment explanation
Indices: 33203386--33203783 Score: 724
Period size: 198 Copynumber: 2.0 Consensus size: 197
33203376 TCCTTCACTT
* *
33203386 GGAACCACGCATGCGACCTAGCTACATATATCCTGTAGCTCTCTTGTCTCCATGGTGTACACATA
1 GGAACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTCCATGGTGTACACATA
* *
33203451 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTATTGTACACATGATGTCCAC
33203516 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
33203581 CGA
196 C-A
* *
33203584 GGAACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTGCATGGTGTACACATG
1 GGAACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTCCATGGTGTACACATA
33203649 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTATTGTACACATGATGTCCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTATTGTACACATGATGTCCAC
*
33203714 TCAGCACTATACATGTGACCTAGCTACATCCCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
33203779 CA
196 CA
33203781 GGA
1 GGA
33203784 TTTCTCTCTC
Statistics
Matches: 193, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
197 4 0.02
198 189 0.98
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (197 bp):
GGAACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTCCATGGTGTACACATA
GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTATTGTACACATGATGTCCAC
TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
CA
Found at i:33208167 original size:68 final size:66
Alignment explanation
Indices: 33208026--33208374 Score: 192
Period size: 68 Copynumber: 5.3 Consensus size: 66
33208016 TGGAGCCACG
* * * * *
33208026 CATGCGACCTAGCTACAT-AT-A-TCCTGTACCTCTCTTGTCTACATGGTGTACACAT-AGTA-T
1 CATGCGACCTAGCTACATCATAATTCTTGTAGCTCTCTTGTC-ACATGATGTGCAC-TCAGCACT
*
33208086 CACC
64 -ACA
33208090 CATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACT
1 CATGCGACCTAGCTACATCATAAT-TCTTGTAGCTCTCTTGT-CACATGATGTGCACTCAGCACT
*
33208155 ATA
64 ACA
* ** * * * * *
33208158 CATGTGACCTAGCTACAT-ACCA-TC-TGTATCATCCAATCTT-TC-CA-AAGGTTCAAC-CGGG
1 CATGCGACCTAGCTACATCATAATTCTTGTAGC-T-C--TCTTGTCACATGATGTGC-ACTC--A
* * *
33208216 GAACCACG
59 GCACTACA
* * * * *
33208224 CATGCGACCTAGCTACAT-AT-ATCCCT-TAGCTCTCTTGTCTACATGGTGTACACAT-AGTA-T
1 CATGCGACCTAGCTACATCATAATTCTTGTAGCTCTCTTGTC-ACATGATGTGCAC-TCAGCACT
*
33208284 CACC
64 -ACA
33208288 CATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACT
1 CATGCGACCTAGCTACATCATAAT-TCTTGTAGCTCTCTTGT-CACATGATGTGCACTCAGCACT
*
33208353 ATA
64 ACA
*
33208356 CATGTGACCTAGCTACATC
1 CATGCGACCTAGCTACATC
33208375 CCATCTGTAT
Statistics
Matches: 216, Mismatches: 39, Indels: 56
0.69 0.13 0.18
Matches are distributed among these distances:
62 4 0.02
63 2 0.01
64 51 0.24
65 17 0.08
66 34 0.16
67 8 0.04
68 96 0.44
69 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (66 bp):
CATGCGACCTAGCTACATCATAATTCTTGTAGCTCTCTTGTCACATGATGTGCACTCAGCACTAC
A
Found at i:33208262 original size:198 final size:198
Alignment explanation
Indices: 33208021--33208410 Score: 737
Period size: 198 Copynumber: 2.0 Consensus size: 198
33208011 TCACATGGAG
33208021 CCACGCATGCGACCTAGCTACATATATCCTGTACCTCTCTTGTCTACATGGTGTACACATAGTAT
1 CCACGCATGCGACCTAGCTACATATATCCTGTACCTCTCTTGTCTACATGGTGTACACATAGTAT
33208086 CACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAG
66 CACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAG
33208151 CACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCAAAGGTTCAACCGGG
131 CACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCAAAGGTTCAACCGGG
33208216 GAA
196 GAA
*
33208219 CCACGCATGCGACCTAGCTACATATATCCCT-TAGCTCTCTTGTCTACATGGTGTACACATAGTA
1 CCACGCATGCGACCTAGCTACATATAT-CCTGTACCTCTCTTGTCTACATGGTGTACACATAGTA
33208283 TCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCA
65 TCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCA
* *
33208348 GCACTATACATGTGACCTAGCTACATCCCATCTGTATCATCCAATCTTTCCGAAGGTTCAACC
130 GCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCAAAGGTTCAACC
33208411 AGGATTTCTC
Statistics
Matches: 188, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
198 185 0.98
199 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (198 bp):
CCACGCATGCGACCTAGCTACATATATCCTGTACCTCTCTTGTCTACATGGTGTACACATAGTAT
CACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAG
CACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCAAAGGTTCAACCGGG
GAA
Found at i:33210773 original size:29 final size:29
Alignment explanation
Indices: 33210712--33210801 Score: 121
Period size: 29 Copynumber: 3.1 Consensus size: 29
33210702 ACATACATGT
* *
33210712 ATATGACCCACTAGGCCC-AATC-TCATTC
1 ATATGGCCCATTAGGCCCAAATCAT-ATTC
33210740 ATATGGCCCATTAGGCCCAAATCATATTC
1 ATATGGCCCATTAGGCCCAAATCATATTC
* *
33210769 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCATATTC
33210798 ATAT
1 ATAT
33210802 ATATGCTTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
28 16 0.29
29 38 0.69
30 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCATATTC
Found at i:33211053 original size:16 final size:16
Alignment explanation
Indices: 33211012--33211062 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
33211002 GTAGCCAAAC
33211012 TTTCGGCTTTT-GGCA
1 TTTCGGCTTTTCGGCA
** *
33211027 TTTTAGCTTTTCGGCC
1 TTTCGGCTTTTCGGCA
33211043 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
33211059 TTTC
1 TTTC
33211063 AGGATTTGCC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
15 9 0.31
16 20 0.69
ACGTcount: A:0.06, C:0.24, G:0.22, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:33215323 original size:29 final size:29
Alignment explanation
Indices: 33215255--33215408 Score: 229
Period size: 29 Copynumber: 5.3 Consensus size: 29
33215245 AAGTCTACAA
* *
33215255 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** *
33215283 TTATTCATATGGTCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
33215312 ACTTTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
33215341 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
33215370 ACATTCATATGGCCCATTAGACCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
33215399 ACATTCATAT
1 ACATTCATAT
33215409 ACATGCTTTC
Statistics
Matches: 112, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.17
29 93 0.83
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:33222380 original size:43 final size:43
Alignment explanation
Indices: 33222267--33222433 Score: 110
Period size: 43 Copynumber: 3.9 Consensus size: 43
33222257 ACATAAGCTC
* * * *
33222267 ATACAATGCC-ATATCCCAAATATGGTCTTACATGT--TATCA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCA
* * * * * *
33222307 CATATCGATGCCACTGTCCTAAAAAGGGTCTTACACG-AA-ATCA
1 -ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCA
* *
33222350 ATTAACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCA
1 A-T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCA
* * * * *
33222395 ATACATTGGCAATGTCCTAGACATAGTCTTACATGTAAT
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
33222434 CACATTTCGA
Statistics
Matches: 99, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 81 0.82
44 4 0.04
45 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCA
Found at i:33226044 original size:27 final size:27
Alignment explanation
Indices: 33225996--33226127 Score: 135
Period size: 27 Copynumber: 4.9 Consensus size: 27
33225986 GCAAGGCTTC
* * * *
33225996 CAGATATTATGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
33226023 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
33226049 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
33226076 CAGATAATTGTGGTATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
33226103 CAGATATATGTGGCATAGCCACCAG
1 CAGATAT-TGTGGCAGAGCCACCAG
33226128 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.10
27 79 0.88
28 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:33226086 original size:54 final size:54
Alignment explanation
Indices: 33226014--33226127 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
33226004 ATGACGGAGT
*
33226014 CACCAGATACAGATATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* * * *
33226068 CACCAGAT-CAGATAATTGTGGTATAGCCACCAGGACAGATATATGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
33226122 CACCAG
1 CACCAG
33226128 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 5 0.09
54 49 0.91
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:33227752 original size:26 final size:26
Alignment explanation
Indices: 33227722--33227803 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
33227712 TGAAATGCCC
33227722 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33227748 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
33227774 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33227800 ATCA
1 ATCA
33227804 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:33234006 original size:27 final size:27
Alignment explanation
Indices: 33233958--33234113 Score: 169
Period size: 27 Copynumber: 5.8 Consensus size: 27
33233948 GCGAGGCTGC
* *
33233958 CAGATATTGTGAC-GTAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
33233985 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
33234011 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
33234038 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
33234065 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
33234092 TAGATATTTGTGGCATAGCCAC
1 CAGATA-TTGTGGCAGAGCCAC
33234114 TAGGATGCTT
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 4 0.04
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:33234048 original size:54 final size:54
Alignment explanation
Indices: 33233976--33234113 Score: 215
Period size: 54 Copynumber: 2.6 Consensus size: 54
33233966 GTGACGTAGT
* *
33233976 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
33234030 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
33234084 CACCAGATTAGATATTTGTGGCATAGCCAC
1 CACCAGATCAGATAATTGTGGCATAGCCAC
33234114 TAGGATGCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 73 0.94
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:33234077 original size:81 final size:80
Alignment explanation
Indices: 33233958--33234113 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 80
33233948 GCGAGGCTGC
* * *
33233958 CAGATATTGTGACGTAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTG
1 CAGATATTGTGACATAGCCACCAGAGACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTG
*
33234023 GTAGAGCCACCAGAT
66 GCAGAGCCACCAGAT
* ** *
33234038 CAGATAATTGTGGCATAGCCACCAG-GACAGATATATGTGGCAGAGCCACCAGATTAGATATTTG
1 CAGAT-ATTGTGACATAGCCACCAGAGACAGATAT-TGTGGCAGAGCCACCAGAACAGATATATG
*
33234102 TGGCATAGCCAC
64 TGGCAGAGCCAC
33234114 TAGGATGCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
80 13 0.20
81 52 0.80
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (80 bp):
CAGATATTGTGACATAGCCACCAGAGACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTG
GCAGAGCCACCAGAT
Found at i:33235241 original size:24 final size:20
Alignment explanation
Indices: 33235186--33235246 Score: 122
Period size: 20 Copynumber: 3.0 Consensus size: 20
33235176 AATCTTTCAC
33235186 ACATAACTTGCATGCATGTT
1 ACATAACTTGCATGCATGTT
33235206 ACATAACTTGCATGCATGTT
1 ACATAACTTGCATGCATGTT
33235226 ACATAACTTGCATGCATGTT
1 ACATAACTTGCATGCATGTT
33235246 A
1 A
33235247 TTTAAACATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (20 bp):
ACATAACTTGCATGCATGTT
Found at i:33235783 original size:26 final size:26
Alignment explanation
Indices: 33235753--33235834 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
33235743 TGAAATGCCC
33235753 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33235779 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
33235805 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33235831 ATCA
1 ATCA
33235835 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:33236202 original size:46 final size:48
Alignment explanation
Indices: 33236136--33236259 Score: 135
Period size: 46 Copynumber: 2.6 Consensus size: 48
33236126 TCAAGATATT
* * * * *
33236136 TAAGCCAGCGTAAGAAATGTCCGGGACATGCATCGGTATTGAGACA-A
1 TAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATA
* * * * *
33236183 -GAGCTAGTGTAAGACATGTCTTGGACATGCATCGGCCTTGCGATATA
1 TAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATA
*
33236230 TAAGCTAGTGTAAGACCTGTCTGGGACATG
1 TAAGCTAGTGTAAGACATGTCTGGGACATG
33236260 GTATTAGCTT
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
46 35 0.56
47 1 0.02
48 26 0.42
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
TAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATA
Found at i:33238483 original size:46 final size:46
Alignment explanation
Indices: 33238413--33238676 Score: 234
Period size: 46 Copynumber: 5.7 Consensus size: 46
33238403 TGATATGTGT
*
33238413 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-CAGCATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATGAG-ATGAGA
* * * *
33238459 GCCAGTGTAAGACATGTCTTGGACATGCATCGGCC-TCGAGAT-ATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-GAGATGA---GA
* * * * * * *
33238507 GCCAGTGTAAGACATGTCTAGAACATGAAT-TGGCATTGAGTTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-TGAGATGAGA
* * *
33238553 GCTAGTGTAAGACATGTTTGGGACATGCATCA-ACATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-TGAGATGAGA
* * *
33238599 GCTAGTGTAAGACATGTCAGGGACATGCAT-TGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-TGAGATGAGA
*
33238645 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
33238677 GATATCTTAA
Statistics
Matches: 178, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 135 0.76
47 8 0.04
48 32 0.18
49 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATGAGATGAGA
Found at i:33244361 original size:46 final size:47
Alignment explanation
Indices: 33244194--33244448 Score: 446
Period size: 46 Copynumber: 5.5 Consensus size: 47
33244184 GTATATATGA
*
33244194 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
33244241 --TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
33244286 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33244333 GATAAGG-CGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33244379 GTTAA-GCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33244425 GATAAGGCCGAATGGCTAATGTGA
1 GATAAGGCCGAATGGCCAATGTGA
33244449 AATATGTATG
Statistics
Matches: 198, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
45 45 0.23
46 84 0.42
47 69 0.35
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
Found at i:33244409 original size:139 final size:139
Alignment explanation
Indices: 33244194--33244448 Score: 469
Period size: 139 Copynumber: 1.8 Consensus size: 139
33244184 GTATATATGA
33244194 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTTAAGGCCGAATGGCCAAT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTTAAGGCCGAATGGCCAAT
33244259 GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
66 GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
33244324 CATATGTGT
131 CATATGTGT
33244333 GATAAGG-CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGTTAA-GCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA--TGTTAAGGCCGAATGGCCA
*
33244396 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCTAATGTGA
64 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA
33244449 AATATGTATG
Statistics
Matches: 113, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
138 36 0.32
139 71 0.63
140 6 0.05
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.26
Consensus pattern (139 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTTAAGGCCGAATGGCCAAT
GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
CATATGTGT
Found at i:33244487 original size:48 final size:47
Alignment explanation
Indices: 33244200--33244504 Score: 158
Period size: 46 Copynumber: 6.6 Consensus size: 47
33244190 ATGAGATAAG
* * * * * *
33244200 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATATGTTAAG
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTGGTAAA
* * * *
33244245 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGTGTGATAAG
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G-TAAA
* * *
33244292 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGT-GTGATAA
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTGGT-A-AA
* * * *
33244338 GGCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATATGT-GTTAA
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATG--TATATGTGGTAAA
* * * *
33244384 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGTGTGATAAG
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G-TAAA
*
33244431 GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 GCCGAATGGCTAATGTGAAATATGTATGA-ACATGTATATGTGGTAAA
*
33244479 GCCGAATGGCTAGTGTGAAATATGTA
1 GCCGAATGGCTAATGTGAAATATGTA
33244505 GGCGATGTGC
Statistics
Matches: 231, Mismatches: 16, Indels: 23
0.86 0.06 0.09
Matches are distributed among these distances:
44 7 0.03
45 41 0.18
46 67 0.29
47 65 0.28
48 36 0.16
49 4 0.02
50 11 0.05
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
GCCGAATGGCTAATGTGAAATATGTATGAACATGTATATGTGGTAAA
Found at i:33244758 original size:37 final size:37
Alignment explanation
Indices: 33244650--33244758 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
33244640 GGAAATATAT
** *
33244650 TCCGGGTAAGATTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
33244687 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
33244724 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
33244759 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:33246338 original size:40 final size:40
Alignment explanation
Indices: 33246015--33246326 Score: 473
Period size: 40 Copynumber: 7.8 Consensus size: 40
33246005 GAGAATTGAG
*
33246015 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATCCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
33246055 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
33246095 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
33246135 AGCGATATATCTAGGCTAAGTCCCG-AGTAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAG-AGCATTCGTGCT
* *
33246175 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
33246215 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
33246255 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
33246295 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
33246327 ATCATGCTGG
Statistics
Matches: 246, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 2 0.01
40 242 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:33250395 original size:47 final size:47
Alignment explanation
Indices: 33250326--33250588 Score: 444
Period size: 47 Copynumber: 5.7 Consensus size: 47
33250316 TTTTAGGTGT
*
33250326 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33250373 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33250420 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33250467 ATATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
33250513 ATATATGTG-TAA-GCCGAATGG-CAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
33250557 ATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
33250589 AATATGTATG
Statistics
Matches: 205, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
44 32 0.16
45 13 0.06
46 48 0.23
47 112 0.55
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:33250626 original size:48 final size:47
Alignment explanation
Indices: 33250340--33250644 Score: 162
Period size: 47 Copynumber: 6.6 Consensus size: 47
33250330 ATGAGATAAG
* * * *
33250340 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATATGTGTTAAG
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATG--TATATGTGGTAAA
* * * *
33250387 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGTGTGATAAG
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G-TAAA
* * *
33250434 GCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGT-GTGATAA
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTGGT-A-AA
* * *
33250480 GGCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATATGT-GT-AA
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATG--TATATGTGGTAAA
* * *
33250525 GCCGAATGGC-AATGTGATGA-ATG--TGAACATGCATATGTGTGATAAG
1 GCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G-TAAA
*
33250571 GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 GCCGAATGGCTAATGTGAAATATGTATGA-ACATGTATATGTGGTAAA
*
33250619 GCCGAATGGCTAGTGTGAAATATGTA
1 GCCGAATGGCTAATGTGAAATATGTA
33250645 GGCGATGTGC
Statistics
Matches: 230, Mismatches: 13, Indels: 29
0.85 0.05 0.11
Matches are distributed among these distances:
42 6 0.03
44 23 0.10
45 21 0.09
46 44 0.19
47 85 0.37
48 36 0.16
49 4 0.02
50 11 0.05
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
GCCGAATGGCTAATGTGAAATATGTATGAACATGTATATGTGGTAAA
Found at i:33250898 original size:37 final size:37
Alignment explanation
Indices: 33250790--33250898 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
33250780 GGAAATATAT
** *
33250790 TCCGGGTAAGATTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
33250827 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
33250864 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
33250899 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:33252482 original size:40 final size:40
Alignment explanation
Indices: 33252160--33252470 Score: 473
Period size: 40 Copynumber: 7.8 Consensus size: 40
33252150 GAGAATTGAG
33252160 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA-TCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
33252199 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
33252239 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
33252279 AGCGATATATCTAGGCTAAGTCCCG-AGTAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAG-AGCATTCGTGCT
* *
33252319 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
33252359 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
33252399 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
33252439 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
33252471 ATCATGCTGG
Statistics
Matches: 246, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 33 0.13
40 211 0.86
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:33256604 original size:47 final size:47
Alignment explanation
Indices: 33256543--33256801 Score: 473
Period size: 47 Copynumber: 5.5 Consensus size: 47
33256533 GTATATAGGA
*
33256543 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33256590 GTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
33256637 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33256684 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33256731 GTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
33256778 GATAAGGCCGAATGGCTAATGTGA
1 GATAAGGCCGAATGGCCAATGTGA
33256802 AATATGTATG
Statistics
Matches: 204, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 204 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
Found at i:33256661 original size:22 final size:22
Alignment explanation
Indices: 33256634--33256708 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
33256624 CATGCATATG
33256634 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
33256656 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
33256679 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
33256703 TGTGAT
1 TGTGAT
33256709 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:33256840 original size:48 final size:47
Alignment explanation
Indices: 33256545--33256857 Score: 215
Period size: 47 Copynumber: 6.6 Consensus size: 47
33256535 ATATAGGAGA
* * *
33256545 TAAGGCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATATGTGT
1 TAAGGCCGAATGGCTAATGTGA-AATATGTATGAACATG--TATATGTGG
* * *
33256592 TAAGGCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGTGTG
1 TAAGGCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G
* * *
33256638 ATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGTGTG
1 -TAAGGCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G
* * *
33256685 ATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATATGTGT
1 -TAAGGCCGAATGGCTAATGTGA-AATATGTATGAACATG--TATATGTGG
* * *
33256733 TAAGGCCGAATGGCCAATGTGATGA-ATG--TGAACATGCATATGTGTG
1 TAAGGCCGAATGGCTAATGTGA-AATATGTATGAACATGTATATGTG-G
*
33256779 ATAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 -TAAGGCCGAATGGCTAATGTGAAATATGTATGA-ACATGTATATGTGG
* *
33256828 TAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TAAGGCCGAATGGCTAATGTGAAATATGTA
33256858 GGCGATGTGC
Statistics
Matches: 244, Mismatches: 12, Indels: 19
0.89 0.04 0.07
Matches are distributed among these distances:
45 14 0.06
46 1 0.00
47 179 0.73
48 28 0.11
49 11 0.05
50 11 0.05
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
TAAGGCCGAATGGCTAATGTGAAATATGTATGAACATGTATATGTGG
Found at i:33257112 original size:37 final size:37
Alignment explanation
Indices: 33257004--33257112 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
33256994 GGAAATATAT
* *
33257004 TCCGGGTAAGACCAGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
33257041 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
33257078 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
33257113 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:33259505 original size:40 final size:41
Alignment explanation
Indices: 33259460--33259567 Score: 114
Period size: 46 Copynumber: 2.5 Consensus size: 41
33259450 AAATTCAGAT
*
33259460 ATATATATGGCACTTAGTGTGTGATTC-AAGAAAG-ATTCGGC
1 ATATATATGGCACTTAGTGTGCGATTCGAA-AAAGCA-TCGGC
*
33259501 TATATATATGTATGGCACTTAGTGTGCGATTCGAAATAGCATCGGC
1 ---ATATA--TATGGCACTTAGTGTGCGATTCGAAAAAGCATCGGC
33259547 -TATATATGGCACTTAGTGTGC
1 ATATATATGGCACTTAGTGTGC
33259568 AAGACCGGGA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
40 17 0.29
42 4 0.07
44 5 0.09
46 29 0.50
47 3 0.05
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (41 bp):
ATATATATGGCACTTAGTGTGCGATTCGAAAAAGCATCGGC
Found at i:33259522 original size:46 final size:46
Alignment explanation
Indices: 33259458--33259553 Score: 133
Period size: 46 Copynumber: 2.1 Consensus size: 46
33259448 GAAAATTCAG
*
33259458 ATATATATATGGCACTTAGTGTGTGATTC-AAGAAAG-ATTCGGCTAT
1 ATATATATATGGCACTTAGTGTGCGATTCGAA-AAAGCA-TCGGCTAT
* *
33259504 ATATATGTATGGCACTTAGTGTGCGATTCGAAATAGCATCGGCTAT
1 ATATATATATGGCACTTAGTGTGCGATTCGAAAAAGCATCGGCTAT
33259550 ATAT
1 ATAT
33259554 GGCACTTAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
46 42 0.93
47 3 0.07
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (46 bp):
ATATATATATGGCACTTAGTGTGCGATTCGAAAAAGCATCGGCTAT
Found at i:33273473 original size:40 final size:41
Alignment explanation
Indices: 33273428--33273530 Score: 122
Period size: 44 Copynumber: 2.5 Consensus size: 41
33273418 CAATTCAGAT
*
33273428 ATATATATGGCACTTAGT-ATGCGATTCAAGAA-AGCTTCGGC
1 ATATATATGGCACTTAGTGA-GCGATTC-AGAATAGCATCGGC
33273469 TATATATATATGGCACTTAGTGAGCGATTCAGAATAGCATCGGC
1 ---ATATATATGGCACTTAGTGAGCGATTCAGAATAGCATCGGC
*
33273513 -TATATATGGCGCTTAGTG
1 ATATATATGGCACTTAGTG
33273531 TGCAAGACTG
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
40 17 0.31
43 4 0.07
44 33 0.60
45 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (41 bp):
ATATATATGGCACTTAGTGAGCGATTCAGAATAGCATCGGC
Found at i:33273483 original size:44 final size:44
Alignment explanation
Indices: 33273426--33273519 Score: 147
Period size: 44 Copynumber: 2.1 Consensus size: 44
33273416 GACAATTCAG
*
33273426 ATATATATATGGCACTTAGT-ATGCGATTCAAGAA-AGCTTCGGCT
1 ATATATATATGGCACTTAGTGA-GCGATTC-AGAATAGCATCGGCT
33273470 ATATATATATGGCACTTAGTGAGCGATTCAGAATAGCATCGGCT
1 ATATATATATGGCACTTAGTGAGCGATTCAGAATAGCATCGGCT
33273514 ATATAT
1 ATATAT
33273520 GGCGCTTAGT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
43 4 0.09
44 42 0.89
45 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (44 bp):
ATATATATATGGCACTTAGTGAGCGATTCAGAATAGCATCGGCT
Done.