Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 103 of 259
Found at i:33277785 original size:14 final size:14
Alignment explanation
Indices: 33277768--33277794 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33277758 ATGTATGATA
33277768 ATTTTAGTATAGTC
1 ATTTTAGTATAGTC
33277782 ATTTTAGTATAGT
1 ATTTTAGTATAGT
33277795 TAAATCTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.52
Consensus pattern (14 bp):
ATTTTAGTATAGTC
Found at i:33281570 original size:27 final size:27
Alignment explanation
Indices: 33281540--33281644 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 27
33281530 AAATTGTACA
* * *
33281540 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
* * *
33281567 GCACTCAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
* **
33281594 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGAT
*
33281621 GCACTAAGTGTGCGAGATGGACTA
1 GCACTAAGTGTGCGA-ATTGACTA
33281645 AGATTTGATT
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 57 0.90
28 6 0.10
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:33283537 original size:17 final size:18
Alignment explanation
Indices: 33283489--33283544 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
33283479 GCCCCATGTG
*
33283489 CCCGTGTGGGCCCACACG
1 CCCGTGTGGGCCCACACA
*
33283507 CCCGTATGGGCCCACACA
1 CCCGTGTGGGCCCACACA
*
33283525 CCTGTGT-GGCCCACACA
1 CCCGTGTGGGCCCACACA
33283542 CCC
1 CCC
33283545 AGATTGACCT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.16, C:0.46, G:0.25, T:0.12
Consensus pattern (18 bp):
CCCGTGTGGGCCCACACA
Found at i:33290719 original size:7 final size:7
Alignment explanation
Indices: 33290707--33290732 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
33290697 ATAATTTTGG
33290707 CGTTCGA
1 CGTTCGA
33290714 CGTTCGA
1 CGTTCGA
33290721 CGTTCGA
1 CGTTCGA
33290728 CGTTC
1 CGTTC
33290733 ACCGATCACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.27, T:0.31
Consensus pattern (7 bp):
CGTTCGA
Found at i:33293708 original size:17 final size:18
Alignment explanation
Indices: 33293666--33293708 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
33293656 TTCAGTATAA
*
33293666 TGGGCCCATATGCTCGCG
1 TGGGCCCATACGCTCGCG
33293684 TGGGCCCATACG-TC-CG
1 TGGGCCCATACGCTCGCG
33293700 TGTGGCCCA
1 TG-GGCCCA
33293709 CACACCCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 11 0.48
ACGTcount: A:0.12, C:0.35, G:0.33, T:0.21
Consensus pattern (18 bp):
TGGGCCCATACGCTCGCG
Found at i:33294479 original size:46 final size:46
Alignment explanation
Indices: 33294412--33294503 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
33294402 GTTAGTTTTT
33294412 TTCTCATGAAGAGGGAGAGAAAATTTTTCAAAAAGAGAAGATAGCA
1 TTCTCATGAAGAGGGAGAGAAAATTTTTCAAAAAGAGAAGATAGCA
*
33294458 TTCTCATGAAGAGGGAGAGAAATTTTTTCAAAAAGAGAAGATAGCA
1 TTCTCATGAAGAGGGAGAGAAAATTTTTCAAAAAGAGAAGATAGCA
33294504 ATTTTTGATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.23
Consensus pattern (46 bp):
TTCTCATGAAGAGGGAGAGAAAATTTTTCAAAAAGAGAAGATAGCA
Found at i:33294787 original size:29 final size:29
Alignment explanation
Indices: 33294745--33294804 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
33294735 TTGCTAAAGG
33294745 TAGAGCTTGAACTTCAGACCTCACACACA
1 TAGAGCTTGAACTTCAGACCTCACACACA
** *
33294774 TAGAGCTTGAACTTGGGAGCTCACACACA
1 TAGAGCTTGAACTTCAGACCTCACACACA
33294803 TA
1 TA
33294805 CCCAGAGCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (29 bp):
TAGAGCTTGAACTTCAGACCTCACACACA
Found at i:33299217 original size:16 final size:16
Alignment explanation
Indices: 33299193--33299229 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
33299183 TTTAAAAAGG
*
33299193 AAAACAAATGAATCTT
1 AAAAAAAATGAATCTT
*
33299209 AAAAAAAATGAGTCTT
1 AAAAAAAATGAATCTT
33299225 AAAAA
1 AAAAA
33299230 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (16 bp):
AAAAAAAATGAATCTT
Found at i:33301996 original size:32 final size:32
Alignment explanation
Indices: 33301955--33302018 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
33301945 TAAGGCAGAG
33301955 ATGGAAAGAGTTACCGAATACCAAAAAATCAT
1 ATGGAAAGAGTTACCGAATACCAAAAAATCAT
*
33301987 ATGGAAAGAGTTACCGAATACCGAAAAATCAT
1 ATGGAAAGAGTTACCGAATACCAAAAAATCAT
33302019 CCATGAAGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (32 bp):
ATGGAAAGAGTTACCGAATACCAAAAAATCAT
Found at i:33304507 original size:8 final size:8
Alignment explanation
Indices: 33304494--33304523 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
33304484 CAAAATGCCG
33304494 GCTTTTCA
1 GCTTTTCA
*
33304502 GCTTTTCG
1 GCTTTTCA
33304510 GCTTTTCA
1 GCTTTTCA
33304518 GCTTTT
1 GCTTTT
33304524 GCCAATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.07, C:0.23, G:0.17, T:0.53
Consensus pattern (8 bp):
GCTTTTCA
Found at i:33304513 original size:16 final size:16
Alignment explanation
Indices: 33304492--33304523 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33304482 CTCAAAATGC
33304492 CGGCTTTTCAGCTTTT
1 CGGCTTTTCAGCTTTT
33304508 CGGCTTTTCAGCTTTT
1 CGGCTTTTCAGCTTTT
33304524 GCCAATCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
CGGCTTTTCAGCTTTT
Found at i:33318845 original size:15 final size:16
Alignment explanation
Indices: 33318825--33318860 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
33318815 ATAGATACGA
33318825 TATTTATTTTT-TGTT
1 TATTTATTTTTATGTT
*
33318840 TATTTATTTTTATTTT
1 TATTTATTTTTATGTT
33318856 TATTT
1 TATTT
33318861 TCTTTTTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TATTTATTTTTATGTT
Found at i:33322927 original size:28 final size:28
Alignment explanation
Indices: 33322894--33322948 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
33322884 AATACAGTCC
* *
33322894 GGGCCTTAGCCCTATACAGTAACAGTAT
1 GGGCCTAAGCCCAATACAGTAACAGTAT
*
33322922 GGGCCTAAGCCCAATACAGTATCAGTA
1 GGGCCTAAGCCCAATACAGTAACAGTA
33322949 CAGTGTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (28 bp):
GGGCCTAAGCCCAATACAGTAACAGTAT
Found at i:33323316 original size:27 final size:27
Alignment explanation
Indices: 33323286--33323347 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
33323276 TACGAAACAT
33323286 AAGGGCATAATCATCATTTTACCATAC
1 AAGGGCATAATCATCATTTTACCATAC
* * ** * *
33323313 AAGGGTATTATGGTCATTTTACCCTAT
1 AAGGGCATAATCATCATTTTACCATAC
33323340 AAGGGCAT
1 AAGGGCAT
33323348 TACAATCATT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (27 bp):
AAGGGCATAATCATCATTTTACCATAC
Found at i:33323349 original size:27 final size:27
Alignment explanation
Indices: 33323299--33323592 Score: 284
Period size: 27 Copynumber: 10.6 Consensus size: 27
33323289 GGCATAATCA
*
33323299 TCATTTTACCATACAAGGGTATTATGG
1 TCATTTTACCCTACAAGGGTATTATGG
* * ***
33323326 TCATTTTACCCTATAAGGGCATTACAA
1 TCATTTTACCCTACAAGGGTATTATGG
* * * *
33323353 TCATTTTGCCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAAGGGTATTATGG
*
33323380 TCATTTTACCCTACAGGGGCATTATGGTCATTATGG
1 TCATTTTACCCT--A----CA--AGGGT-ATTATGG
* * * *
33323416 TCATTTTGCCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAAGGGTATTATGG
*
33323443 TCATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAAGGGTATTATGG
*
33323470 TCATTTTACCCTAC-AGTGGTATTATGT
1 TCATTTTACCCTACAAG-GGTATTATGG
* * *
33323497 TCATGTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAAGGGTATTATGG
33323524 TCATTTTACCCTACAAGGGTATTATGG
1 TCATTTTACCCTACAAGGGTATTATGG
* * *
33323551 TTATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAAGGGTATTATGG
33323578 TCATTTTACCCTACA
1 TCATTTTACCCTACA
33323593 CAGGCATGAC
Statistics
Matches: 219, Mismatches: 37, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.00
27 189 0.86
28 5 0.02
29 1 0.00
30 1 0.00
33 1 0.00
34 1 0.00
35 3 0.01
36 17 0.08
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGTATTATGG
Found at i:33323408 original size:81 final size:81
Alignment explanation
Indices: 33323299--33323614 Score: 339
Period size: 81 Copynumber: 3.8 Consensus size: 81
33323289 GGCATAATCA
* * ** *
33323299 TCATTTTACCATACAAGGGTATTATGGTCATTTTACCCTATAAGGGCATTACAATCATTTTGCCC
1 TCATTTTACCCTACAAGGGCATTATGGTCATTTTACCCTATAAGGGCATTACGGTCATTTTACCC
* *
33323364 TATAGGGGTATTACGG
66 TACAGGGGTATTATGG
* * *
33323380 TCATTTTACCCTACAGGGGCATTATGGTCATTATGGTCATTTTGCCCTATAGGGGTATTACGGTC
1 TCATTTTACCCTACAAGGGCATTATGGTCATT-T--T-A-----CCCTATAAGGGCATTACGGTC
33323445 ATTTTACCCTACAGGGGTATTATGG
57 ATTTTACCCTACAGGGGTATTATGG
* * * *
33323470 TCATTTTACCCTAC-AGTGGTATTATGTTCATGTTACCCTACAAGGGCATTACGGTCATTTTACC
1 TCATTTTACCCTACAAG-GGCATTATGGTCATTTTACCCTATAAGGGCATTACGGTCATTTTACC
*
33323534 CTACAAGGGTATTATGG
65 CTACAGGGGTATTATGG
* * * * *
33323551 TTATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACACA-GGCATGACGGTTATTTTACC
1 TCATTTTACCCTACAAGGGCATTATGGTCATTTTACCCTATA-AGGGCATTACGGTCATTTTACC
33323615 TATTTTGGGG
Statistics
Matches: 198, Mismatches: 25, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
81 123 0.62
82 4 0.02
84 1 0.01
85 1 0.01
86 1 0.01
87 1 0.01
89 2 0.01
90 65 0.33
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
TCATTTTACCCTACAAGGGCATTATGGTCATTTTACCCTATAAGGGCATTACGGTCATTTTACCC
TACAGGGGTATTATGG
Found at i:33323428 original size:36 final size:36
Alignment explanation
Indices: 33323373--33323447 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
33323363 CTATAGGGGT
*
33323373 ATTACGGTCATTTTACCCTACAGGGGCATTATGGTC
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGGTC
* * * *
33323409 ATTATGGTCATTTTGCCCTATAGGGGTATTACGGTC
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGGTC
33323445 ATT
1 ATT
33323448 TTACCCTACA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (36 bp):
ATTACGGTCATTTTACCCTACAGGGGCATTACGGTC
Found at i:33323444 original size:63 final size:63
Alignment explanation
Indices: 33323353--33323474 Score: 235
Period size: 63 Copynumber: 1.9 Consensus size: 63
33323343 GGCATTACAA
33323353 TCATTTTGCCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTCATTATGG
1 TCATTTTGCCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTCATTATGG
*
33323416 TCATTTTGCCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCATT
1 TCATTTTGCCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTCATT
33323475 TTACCCTACA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (63 bp):
TCATTTTGCCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTCATTATGG
Found at i:33323598 original size:27 final size:26
Alignment explanation
Indices: 33323408--33323614 Score: 189
Period size: 27 Copynumber: 7.7 Consensus size: 26
33323398 GCATTATGGT
* * * *
33323408 CATTATGGTCATTTTGCCCTATAGGGG
1 CATTACGGTCATTTTACCCTACA-AGG
* *
33323435 TATTACGGTCATTTTACCCTACAGGGG
1 CATTACGGTCATTTTACCCTACA-AGG
* * *
33323462 TATTATGGTCATTTTACCCTACAGTGG
1 CATTACGGTCATTTTACCCTACA-AGG
* * * *
33323489 TATTATGTTCATGTTACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACAA-GG
33323516 CATTACGGTCATTTTACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACAA-GG
* * *
33323543 TATTATGGTTATTTTACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACAA-GG
33323570 CATTACGGTCATTTTACCCTACACAGG
1 CATTACGGTCATTTTACCCTACA-AGG
* *
33323597 CATGACGGTTATTTTACC
1 CATTACGGTCATTTTACC
33323615 TATTTTGGGG
Statistics
Matches: 157, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 156 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
CATTACGGTCATTTTACCCTACAAGG
Found at i:33323607 original size:54 final size:53
Alignment explanation
Indices: 33323408--33323614 Score: 236
Period size: 54 Copynumber: 3.8 Consensus size: 53
33323398 GCATTATGGT
* * * * * *
33323408 CATTATGGTCATTTTGCCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGG
1 CATTACGGTCATTTTACCCTACA-AGGTATTACGGTTATTTTACCCTACAAGGG
* * * * *
33323462 TATTATGGTCATTTTACCCTACAGTGGTATTA-TGTTCATGTTACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACA-AGGTATTACGGTT-ATTTTACCCTACAAGGG
*
33323516 CATTACGGTCATTTTACCCTACAAGGGTATTATGGTTATTTTACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACAA-GGTATTACGGTTATTTTACCCTACAAGGG
* *
33323570 CATTACGGTCATTTTACCCTACACAGGCATGACGGTTATTTTACC
1 CATTACGGTCATTTTACCCTACA-AGGTATTACGGTTATTTTACC
33323615 TATTTTGGGG
Statistics
Matches: 133, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.02
54 127 0.95
55 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (53 bp):
CATTACGGTCATTTTACCCTACAAGGTATTACGGTTATTTTACCCTACAAGGG
Found at i:33326888 original size:11 final size:11
Alignment explanation
Indices: 33326874--33326899 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33326864 CCAATTTTCT
33326874 TTAATAATTCC
1 TTAATAATTCC
33326885 TTAATAATTCC
1 TTAATAATTCC
33326896 TTAA
1 TTAA
33326900 ATGAACCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAATAATTCC
Found at i:33330947 original size:17 final size:17
Alignment explanation
Indices: 33330927--33330973 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
33330917 GGTTTATCGC
*
33330927 TTTTAGTTGTTTGTTTA
1 TTTTAGTTGTTTATTTA
**
33330944 TTTTTCTTGTTTATTTA
1 TTTTAGTTGTTTATTTA
*
33330961 TTTTAGTTATTTA
1 TTTTAGTTGTTTA
33330974 ATTTCTCTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.15, C:0.02, G:0.11, T:0.72
Consensus pattern (17 bp):
TTTTAGTTGTTTATTTA
Found at i:33333667 original size:42 final size:43
Alignment explanation
Indices: 33333571--33333735 Score: 126
Period size: 43 Copynumber: 3.8 Consensus size: 43
33333561 AGCTCGTATA
* ***
33333571 ATGCCAAC-GTCCCAGACATGGTCATACATGTAATCAAATAGCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACAAAATCAAATAGCG
* *
33333614 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCGAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACAAAATCAAATAGCG
* * *
33333656 ATGCCGA-TGTCCTAGACATCGTCTTACACGTAAATCTCAAAT--CG
1 ATGCC-ACTGTCCCAGACATGGTCTTACAC--AAA-ATCAAATAGCG
* * *
33333700 ATGCCAACT-TCCCAAACGTGGTCTTACACGAAATCA
1 ATGCC-ACTGTCCCAGACATGGTCTTACACAAAATCA
33333736 CATATTGGAA
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 30 0.31
43 32 0.33
44 27 0.28
45 6 0.06
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACAAAATCAAATAGCG
Found at i:33341024 original size:42 final size:41
Alignment explanation
Indices: 33340965--33341077 Score: 118
Period size: 44 Copynumber: 2.7 Consensus size: 41
33340955 AATGCCACTA
* * * *
33340965 TCCCAAACAGGGTCTTACACGAAATCAAATAAGATGTCGATG
1 TCCCAAACATGGTCTTACACGAAATCAAAT-AGATGCCAACG
* *
33341007 TCCCAGACATGGTCTTACACGTAAATAGCAAATCGATGCCAACG
1 TCCCAAACATGGTCTTACACG-AAAT--CAAATAGATGCCAACG
* *
33341051 TCCCAAACGTGGTCTTACACAAAATCA
1 TCCCAAACATGGTCTTACACGAAATCA
33341078 CACATCGGAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.03
42 19 0.32
43 8 0.14
44 25 0.42
45 5 0.08
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (41 bp):
TCCCAAACATGGTCTTACACGAAATCAAATAGATGCCAACG
Found at i:33341064 original size:44 final size:42
Alignment explanation
Indices: 33340930--33341077 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
33340920 CATTCCAGAT
* * * *
33340930 GTGGTCTTACATGTAATCAAATATAAATGCC-ACTATCCCAAAC
1 GTGGTCTTACACGAAATCAAATA-AGATGCCAAC-GTCCCAAAC
* * * *
33340973 AG-GGTCTTACACGAAATCAAATAAGATGTCGATGTCCCAGAC
1 -GTGGTCTTACACGAAATCAAATAAGATGCCAACGTCCCAAAC
* *
33341015 ATGGTCTTACACGTAAATAGCAAAT-CGATGCCAACGTCCCAAAC
1 GTGGTCTTACACG-AAAT--CAAATAAGATGCCAACGTCCCAAAC
*
33341059 GTGGTCTTACACAAAATCA
1 GTGGTCTTACACGAAATCA
33341078 CACATCGGAA
Statistics
Matches: 84, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 23 0.27
43 28 0.33
44 26 0.31
45 5 0.06
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
GTGGTCTTACACGAAATCAAATAAGATGCCAACGTCCCAAAC
Found at i:33346804 original size:37 final size:37
Alignment explanation
Indices: 33346762--33346834 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
33346752 TTCTCAGAAG
33346762 TATATGTGACTGTTTAGTTCAGAAAGAATTCTTATCA
1 TATATGTGACTGTTTAGTTCAGAAAGAATTCTTATCA
33346799 TATATGTGACTGTTTAGTTCAGAAAGAATTCTTATC
1 TATATGTGACTGTTTAGTTCAGAAAGAATTCTTATC
33346835 GTATGAGAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (37 bp):
TATATGTGACTGTTTAGTTCAGAAAGAATTCTTATCA
Found at i:33350206 original size:43 final size:45
Alignment explanation
Indices: 33350137--33350238 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 45
33350127 TTGAATTTGA
*
33350137 GGCACTGAGTGTGCCTGATACAATTATAGCCTC-GACTAATTAAT-T
1 GGCACTAAGTGTG-CTGATACAATTATAGCCTCAG-CTAATTAATCT
**
33350182 GGCACTAAGTGTG-TGATACAATTATAGTTTCAGCTAATTAATCT
1 GGCACTAAGTGTGCTGATACAATTATAGCCTCAGCTAATTAATCT
33350226 -GCACTAAGTGTGC
1 GGCACTAAGTGTGC
33350239 GAGTTTGTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
43 37 0.73
44 2 0.04
45 12 0.24
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (45 bp):
GGCACTAAGTGTGCTGATACAATTATAGCCTCAGCTAATTAATCT
Found at i:33355671 original size:27 final size:27
Alignment explanation
Indices: 33355641--33355845 Score: 178
Period size: 27 Copynumber: 7.6 Consensus size: 27
33355631 ATATTGAGCC
* *
33355641 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
33355668 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
33355695 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
33355723 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
33355750 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
33355777 CGCACACTTAGTGC-ATTATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
33355804 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
33355831 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
33355846 GTACAATTTA
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
27 129 0.84
28 24 0.16
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:33355806 original size:54 final size:54
Alignment explanation
Indices: 33355641--33355844 Score: 203
Period size: 54 Copynumber: 3.8 Consensus size: 54
33355631 ATATTGAGCC
* * * * * * * *
33355641 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTA-CGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC-AGCATAGTCAATT
* * *
33355695 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTAGTGCAGCATAGTCAATT
** * * ** * *
33355750 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATTATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCAGCATAGTCAATT
*
33355804 CGCACACTTAGTGCAACATAGTCAAATCGTACACTTAGTGC
1 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
33355845 TGTACAATTT
Statistics
Matches: 124, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
54 80 0.65
55 44 0.35
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCAGCATAGTCAATT
Found at i:33363089 original size:33 final size:33
Alignment explanation
Indices: 33363020--33363090 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
33363010 AATAATATTA
* *
33363020 TAAAA-ATATAAAGATTAAATTAAATTAAAAAT
1 TAAAATATATAAAGATTAAATTAAATCAAAAAC
* *
33363052 TAAAATATATAAATATATAAATTAAA-CCAAAAC
1 TAAAATATATAAAGAT-TAAATTAAATCAAAAAC
33363085 TAAAAT
1 TAAAAT
33363091 TTATTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 5 0.15
33 19 0.58
34 9 0.27
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (33 bp):
TAAAATATATAAAGATTAAATTAAATCAAAAAC
Found at i:33364457 original size:31 final size:31
Alignment explanation
Indices: 33364391--33364468 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
33364381 TCAATCTTTA
*
33364391 AATTATGTCTTGCATTATATGTCTGCAAATTT
1 AATTATGTCATGCATTATATGTCT-CAAATTT
* * *
33364423 AATTATGTCGTGCATTATGTGT-TCTATATTT
1 AATTATGTCATGCATTATATGTCTC-AAATTT
*
33364454 AATTAAGTCATGCAT
1 AATTATGTCATGCAT
33364469 AAAAACATCT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
30 1 0.03
31 19 0.47
32 20 0.50
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (31 bp):
AATTATGTCATGCATTATATGTCTCAAATTT
Found at i:33364515 original size:50 final size:49
Alignment explanation
Indices: 33364451--33364568 Score: 141
Period size: 49 Copynumber: 2.4 Consensus size: 49
33364441 GTGTTCTATA
*
33364451 TTTAATTAAGTCATGCA-TA-AAAACATCTTATATGTTAATTAAGTTTGTAT
1 TTTAATTAAGTCATGCATTATAAAAC-TC--ATATGTTAAATAAGTTTGTAT
** *
33364501 TTTAATTATTTCATGCATTATGAAACTCATATGTTAAATAAGTTTGTAT
1 TTTAATTAAGTCATGCATTATAAAACTCATATGTTAAATAAGTTTGTAT
* *
33364550 TTTAATTAAGCCGTGCATT
1 TTTAATTAAGTCATGCATT
33364569 TATGCATCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
49 35 0.60
50 15 0.26
51 4 0.07
52 4 0.07
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (49 bp):
TTTAATTAAGTCATGCATTATAAAACTCATATGTTAAATAAGTTTGTAT
Found at i:33364593 original size:50 final size:49
Alignment explanation
Indices: 33364451--33364594 Score: 153
Period size: 50 Copynumber: 2.9 Consensus size: 49
33364441 GTGTTCTATA
* * **
33364451 TTTAATTAAGTCATGCATAAAAACATCTTATATGTTAATTAAGTTTGTAT
1 TTTAATTAAGCCATGCAT-TATGCATCTTATATGTTAATTAAGTTTGTAT
*** * * * *
33364501 TTTAATTATTTCATGCATTATGAAACTCATATGTTAAATAAGTTTGTAT
1 TTTAATTAAGCCATGCATTATGCATCTTATATGTTAATTAAGTTTGTAT
* *
33364550 TTTAATTAAGCCGTGCATTTATGCATCTTATTTGTTAATTAAGTT
1 TTTAATTAAGCCATGCA-TTATGCATCTTATATGTTAATTAAGTT
33364595 CAAGCATGAG
Statistics
Matches: 75, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
49 37 0.49
50 38 0.51
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (49 bp):
TTTAATTAAGCCATGCATTATGCATCTTATATGTTAATTAAGTTTGTAT
Found at i:33364953 original size:37 final size:37
Alignment explanation
Indices: 33364903--33365004 Score: 114
Period size: 37 Copynumber: 2.8 Consensus size: 37
33364893 TTAAGCCTCC
* *
33364903 ATCAAGTATAGAGACATGACTATTCAAAAACACATAG
1 ATCAAGTAAAGAGACATGACTTTTCAAAAACACATAG
* ** * *
33364940 ATCAAGTAAAGAGACATGGCTTTTCAACTAGACATGG
1 ATCAAGTAAAGAGACATGACTTTTCAAAAACACATAG
* * *
33364977 AACAAGTGAAGAAACATGACTTTTCAAA
1 ATCAAGTAAAGAGACATGACTTTTCAAA
33365005 TATTATCTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.23
Consensus pattern (37 bp):
ATCAAGTAAAGAGACATGACTTTTCAAAAACACATAG
Found at i:33370648 original size:26 final size:26
Alignment explanation
Indices: 33370600--33370667 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
33370590 AGCCCGAATA
33370600 AGCTTCCTGA-T-A-GGCTCTTTGTG
1 AGCTTCCTGATTAATGGCTCTTTGTG
33370623 AGCTTCCTGATTAATGGCTCTTTGTG
1 AGCTTCCTGATTAATGGCTCTTTGTG
33370649 AGCTTCCTG-TTATATGGCT
1 AGCTTCCTGATTA-ATGGCT
33370668 TGAGAGAGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
23 10 0.24
24 1 0.02
25 4 0.10
26 26 0.63
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.41
Consensus pattern (26 bp):
AGCTTCCTGATTAATGGCTCTTTGTG
Found at i:33385799 original size:30 final size:29
Alignment explanation
Indices: 33385756--33385819 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
33385746 CAAGGAGCCG
*
33385756 AAGCTAGTTAAATCGTACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
33385785 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
33385815 AAGCT
1 AAGCT
33385820 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:33387046 original size:21 final size:21
Alignment explanation
Indices: 33387020--33387070 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
33387010 CTGTTTCAGA
33387020 GCATCTTCAGGCTCCCACGTT
1 GCATCTTCAGGCTCCCACGTT
33387041 GCATCTTCAGGCTCCCACGTT
1 GCATCTTCAGGCTCCCACGTT
*
33387062 GCTTCTTCA
1 GCATCTTCA
33387071 ATACTGTGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.37, G:0.18, T:0.31
Consensus pattern (21 bp):
GCATCTTCAGGCTCCCACGTT
Found at i:33392369 original size:40 final size:39
Alignment explanation
Indices: 33392285--33392469 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
33392275 TCGAATGATG
* * * *
33392285 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
33392325 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33392365 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
33392404 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
33392445 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
33392470 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.30
40 78 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33392421 original size:79 final size:81
Alignment explanation
Indices: 33392285--33392467 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33392275 TCGAATGATG
* *
33392285 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33392349 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
33392364 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
33392426 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
33392444 ACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33392468 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:33399564 original size:29 final size:30
Alignment explanation
Indices: 33399483--33399564 Score: 157
Period size: 30 Copynumber: 2.8 Consensus size: 30
33399473 CTAAGTCAGT
33399483 ATCGCACACTTAGTGCCAAAGCTAGTTTAA
1 ATCGCACACTTAGTGCCAAAGCTAGTTTAA
33399513 ATCGCACACTTAGTGCCAAAGCTAGTTTAA
1 ATCGCACACTTAGTGCCAAAGCTAGTTTAA
33399543 ATCGCACA-TTAGTGCCAAAGCT
1 ATCGCACACTTAGTGCCAAAGCT
33399565 TTCGATTCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 14 0.27
30 38 0.73
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (30 bp):
ATCGCACACTTAGTGCCAAAGCTAGTTTAA
Found at i:33402013 original size:53 final size:53
Alignment explanation
Indices: 33401834--33402038 Score: 203
Period size: 53 Copynumber: 3.8 Consensus size: 53
33401824 TAGGGTTTAT
* * * * *
33401834 GGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAA
* * * * * * * * *
33401888 GGAAATCATGTAAGACAATGTCAAGACATGGCATTGATAAACTACGATAATGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAA
* * * *
33401943 AGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAA
* *
33401996 GGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
33402039 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 45 0.38
54 35 0.30
55 38 0.32
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAA
Found at i:33413277 original size:11 final size:11
Alignment explanation
Indices: 33413261--33413285 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
33413251 TTGGAAAACC
33413261 AAAAATTCTGG
1 AAAAATTCTGG
33413272 AAAAATTCTGG
1 AAAAATTCTGG
33413283 AAA
1 AAA
33413286 GAAGATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (11 bp):
AAAAATTCTGG
Found at i:33416318 original size:79 final size:81
Alignment explanation
Indices: 33416209--33416391 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
33416199 TACTCGTTCA
* *
33416209 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
33416272 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
33416289 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
33416352 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
33416368 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33416392 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:33416391 original size:40 final size:40
Alignment explanation
Indices: 33416188--33416391 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
33416178 CAGAATTTAA
** *
33416188 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33416228 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33416268 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33416307 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
33416347 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33416387 CCGGA
1 CCGGA
33416392 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33423218 original size:40 final size:40
Alignment explanation
Indices: 33423120--33423289 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
33423110 TCCTCGTTCA
* * * *
33423120 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
33423159 AATGCCTTCGGGACATAACCCGGATTTAACAACTTGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
33423199 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
33423239 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
33423279 AAGGCCTTCGG
1 AATGCCTTCGG
33423290 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:33423221 original size:79 final size:80
Alignment explanation
Indices: 33423120--33423266 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 80
33423110 TCCTCGTTCA
* * *
33423120 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
33423184 TTAACAACTTGCACG
66 TTAACAACTTGCACG
* * *
33423199 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
33423264 TTA
66 TTA
33423267 GTATCTCGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 34 0.56
80 27 0.44
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAACTTGCACG
Found at i:33423286 original size:80 final size:79
Alignment explanation
Indices: 33423118--33423342 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
33423108 GCTCCTCGTT
* * * * *
33423118 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
*
33423183 TTTAACAACTTGCA
66 TTTAACAACTCGCA
* *
33423197 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
** *
33423262 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
* * * * * * * *
33423277 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCG
33423341 GA
64 GA
33423343 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 38 0.31
80 79 0.65
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:33423302 original size:40 final size:40
Alignment explanation
Indices: 33423118--33423342 Score: 204
Period size: 40 Copynumber: 5.7 Consensus size: 40
33423108 GCTCCTCGTT
* * * * * *
33423118 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
33423158 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTTGCA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
33423197 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
33423237 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
** * * * *
33423277 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAAGGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
33423318 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGA
33423343 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 36 0.22
40 113 0.71
41 11 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:33423342 original size:120 final size:119
Alignment explanation
Indices: 33423120--33423342 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
33423110 TCCTCGTTCA
* * * *
33423120 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
*
33423185 TAACAACTTGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTTGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
33423239 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
33423303 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAACTT-GCACGAAAGCCTTCGGGACTTAACCCGGA
33423343 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 45 0.52
121 5 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTTGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33423351 original size:41 final size:41
Alignment explanation
Indices: 33423274--33423351 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33423264 TTAGTATCTC
* * *
33423274 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33423315 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33423352 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33439068 original size:20 final size:21
Alignment explanation
Indices: 33439043--33439081 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
33439033 GTGTCTATGT
*
33439043 CACACAGGTGTGT-CCCTGAC
1 CACACAGCTGTGTGCCCTGAC
33439063 CACACAGCTGTGTGCCCTG
1 CACACAGCTGTGTGCCCTG
33439082 CATCTAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.36, G:0.26, T:0.21
Consensus pattern (21 bp):
CACACAGCTGTGTGCCCTGAC
Found at i:33444023 original size:79 final size:81
Alignment explanation
Indices: 33443914--33444096 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
33443904 TACTCGTTCA
* *
33443914 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
33443977 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
33443994 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
33444057 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
33444073 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33444097 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:33444096 original size:40 final size:40
Alignment explanation
Indices: 33443893--33444096 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
33443883 CGGAATTTAA
** *
33443893 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33443933 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33443973 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33444012 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
33444052 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33444092 CCGGA
1 CCGGA
33444097 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33452265 original size:39 final size:40
Alignment explanation
Indices: 33452154--33452331 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
33452144 ACTCGTTCAG
*
33452154 ATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAA
* *
33452194 ATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCA
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
*
33452234 ATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
* * * * * *
33452273 ATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 ATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAA
33452314 A-GCCTTCGGGACTTAGCC
1 ATGCCTTCGGGACTTAGCC
33452332 TGGACATCAT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.28
40 72 0.61
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
Found at i:33452295 original size:79 final size:80
Alignment explanation
Indices: 33452154--33452331 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 80
33452144 ACTCGTTCAG
* * * *
33452154 ATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGATA
*
33452219 TAGTAAC-TCGCACCA
66 TAGTAACTTAGCA-CA
**
33452234 ATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGGA
1 ATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGGA
* *
33452296 TATGGTCACTTAGCACA
64 TATAGTAACTTAGCACA
*
33452313 AAGCCTTCGGGACTTAGCC
1 ATGCCTTCGGGACTTAGCC
33452332 TGGACATCAT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.04
79 59 0.70
80 22 0.26
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
ATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGATA
TAGTAACTTAGCACA
Found at i:33461473 original size:44 final size:44
Alignment explanation
Indices: 33461410--33461554 Score: 290
Period size: 44 Copynumber: 3.3 Consensus size: 44
33461400 CGAATAAATA
33461410 ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
1 ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
33461454 ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
1 ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
33461498 ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
1 ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
33461542 ACTTATGTGTTAT
1 ACTTATGTGTTAT
33461555 CATAAATTCA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 101 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (44 bp):
ACTTATGTGTTATATATATAAATACCAATGACATAACATAGTTT
Found at i:33461579 original size:19 final size:19
Alignment explanation
Indices: 33461555--33461596 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
33461545 TATGTGTTAT
*
33461555 CATAAATTCATAGGCATAA
1 CATAAATTCATAGACATAA
**
33461574 CATAAATTTGTAGACATAA
1 CATAAATTCATAGACATAA
33461593 CATA
1 CATA
33461597 CACATTTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (19 bp):
CATAAATTCATAGACATAA
Found at i:33470249 original size:12 final size:12
Alignment explanation
Indices: 33470232--33470259 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
33470222 ACATGTTTGT
33470232 CACGACCTAGCA
1 CACGACCTAGCA
33470244 CACGACCTAGCA
1 CACGACCTAGCA
33470256 CACG
1 CACG
33470260 GGCGTGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.43, G:0.18, T:0.07
Consensus pattern (12 bp):
CACGACCTAGCA
Found at i:33473576 original size:38 final size:38
Alignment explanation
Indices: 33473509--33473588 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
33473499 GATGTGTATT
* * * *
33473509 CGGGTTAAATCCCGCAGGCTTCGTACTGGTATTATATC
1 CGGGATAAATCCCGCAGCCCTAGTACTGGTATTATATC
* *
33473547 CGGGATAAATCCCGCAGCCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGCCCTAGTACTGGTATTATATC
33473585 CGGG
1 CGGG
33473589 CCTTTGTGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGCCCTAGTACTGGTATTATATC
Found at i:33473642 original size:43 final size:43
Alignment explanation
Indices: 33473581--33473662 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
33473571 GCTGGTATTA
*
33473581 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
33473624 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGA
33473663 ATTGATATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.10, C:0.26, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:33478722 original size:28 final size:29
Alignment explanation
Indices: 33478680--33478740 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
33478670 ACATACATGT
*
33478680 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCACTAGGCCCAAATCACATTC
*
33478708 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCCAAATCACATTC
33478737 ATAT
1 ATAT
33478741 ACATGCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCACATTC
Found at i:33478983 original size:16 final size:16
Alignment explanation
Indices: 33478951--33478985 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
33478941 GTAGCCACAC
*
33478951 TTTTGGCTTTTTAGCA
1 TTTTGGCTTTTCAGCA
*
33478967 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCAGCA
33478983 TTT
1 TTT
33478986 CAGCTTTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.14, G:0.20, T:0.57
Consensus pattern (16 bp):
TTTTGGCTTTTCAGCA
Found at i:33482315 original size:13 final size:13
Alignment explanation
Indices: 33482297--33482321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33482287 TTAATCGCAC
33482297 ATCACATATCGAA
1 ATCACATATCGAA
33482310 ATCACATATCGA
1 ATCACATATCGA
33482322 TGCCAACGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (13 bp):
ATCACATATCGAA
Found at i:33482317 original size:45 final size:44
Alignment explanation
Indices: 33482242--33482326 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
33482232 AAAACGTGGA
* * * *
33482242 CTTACTCGCACACATATATTGAAGTCACATATCGATGCCATGGT
1 CTTAATCGCACACACATATCGAAATCACATATCGATGCCATGGT
33482286 CTTAATCGCACATCACATATCGAAATCACATATCGATGCCA
1 CTTAATCGCACA-CACATATCGAAATCACATATCGATGCCA
33482327 ACGTATTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 11 0.31
45 25 0.69
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (44 bp):
CTTAATCGCACACACATATCGAAATCACATATCGATGCCATGGT
Found at i:33482318 original size:101 final size:101
Alignment explanation
Indices: 33482208--33482406 Score: 301
Period size: 101 Copynumber: 2.0 Consensus size: 101
33482198 CATATATCAG
* *
33482208 AATCACATATCGATGCCAACGTATAAAACGTGGACTTACTCGCACACATATAT-TGAAGTCACAT
1 AATCACATATCGATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATAAGAA-TCACAC
*
33482272 ATCGATGCCATGGTCTTAATCGCACATCACATATCGA
65 ATCAATGCCATGGTCTTAATCGCACATCACATATCGA
* * * *
33482309 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCGCACATATATAAGAATCGCACA
1 AATCACATATCGATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATAAGAATCACACA
* *
33482374 TCAATGCTATGGTCTTACTCGCACATCACATAT
66 TCAATGCCATGGTCTTAATCGCACATCACATAT
33482407 TGTAATTCAC
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 85 0.97
102 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (101 bp):
AATCACATATCGATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATAAGAATCACACA
TCAATGCCATGGTCTTAATCGCACATCACATATCGA
Found at i:33490306 original size:25 final size:25
Alignment explanation
Indices: 33490277--33490325 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
33490267 CCTTATAATA
33490277 TAAAAATGACCGTTTTGCCCCTAGT
1 TAAAAATGACCGTTTTGCCCCTAGT
33490302 TAAAAATGACCGTTTTGCCCCTAG
1 TAAAAATGACCGTTTTGCCCCTAG
33490326 GGTTTATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (25 bp):
TAAAAATGACCGTTTTGCCCCTAGT
Found at i:33490377 original size:9 final size:9
Alignment explanation
Indices: 33490365--33490421 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
33490355 TTTGATAAAC
33490365 ATGATATGT
1 ATGATATGT
*
33490374 ATGATATGCAC
1 ATGATATG--T
33490385 ATGATATGT
1 ATGATATGT
*
33490394 ATGATATGCAC
1 ATGATATG--T
33490405 ATGATATGT
1 ATGATATGT
33490414 ATGATATG
1 ATGATATG
33490422 CACAAGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:33490390 original size:11 final size:11
Alignment explanation
Indices: 33490374--33490425 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
33490364 CATGATATGT
33490374 ATGATATGCAC
1 ATGATATGCAC
*
33490385 ATGATATG--T
1 ATGATATGCAC
33490394 ATGATATGCAC
1 ATGATATGCAC
*
33490405 ATGATATG--T
1 ATGATATGCAC
33490414 ATGATATGCAC
1 ATGATATGCAC
33490425 A
1 A
33490426 AGAGATGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
9 16 0.48
11 17 0.52
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:33490433 original size:20 final size:20
Alignment explanation
Indices: 33490363--33490425 Score: 126
Period size: 20 Copynumber: 3.1 Consensus size: 20
33490353 ATTTTGATAA
33490363 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33490383 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33490403 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33490423 ACA
1 ACA
33490426 AGAGATGTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:33490554 original size:23 final size:24
Alignment explanation
Indices: 33490479--33490608 Score: 192
Period size: 24 Copynumber: 5.4 Consensus size: 24
33490469 GAGGAAGTGC
33490479 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
33490503 AAAAAGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33490527 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
33490551 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
33490574 AAAAAAGGGATT-TGCCCCATTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
33490599 AAAAGAGGCT
1 AAAAG-GGCT
33490609 AGGCCTCCAA
Statistics
Matches: 97, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
23 28 0.29
24 49 0.51
25 12 0.12
26 8 0.08
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:33494563 original size:18 final size:19
Alignment explanation
Indices: 33494540--33494576 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
33494530 TGGGCCCAAC
*
33494540 AGCCCA-TCGGGCCCATTT
1 AGCCCACTCCGGCCCATTT
33494558 AGCCCACTCCGGCCCATTT
1 AGCCCACTCCGGCCCATTT
33494577 GGCCAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.16, C:0.43, G:0.19, T:0.22
Consensus pattern (19 bp):
AGCCCACTCCGGCCCATTT
Found at i:33494724 original size:16 final size:16
Alignment explanation
Indices: 33494683--33494725 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
33494673 GTAGCCAAAC
33494683 TTTCAGCTTTTTGACA
1 TTTCAGCTTTTTGACA
* *
33494699 TTTCAACTTTTTGGCA
1 TTTCAGCTTTTTGACA
*
33494715 TTTCGGCTTTT
1 TTTCAGCTTTT
33494726 CGGGATATGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTTGACA
Found at i:33502124 original size:173 final size:172
Alignment explanation
Indices: 33501835--33502182 Score: 633
Period size: 173 Copynumber: 2.0 Consensus size: 172
33501825 TACCATTTCA
*
33501835 ATATATTTCATTATGATTAAGCATTATATAATCCAAACATAAGTTTGGCACAAGCATAAGCATCA
1 ATATATTTCAATATGATTAAGCATTATATAATCCAAACATAAGTTTGGCACAAGCATAAGCATCA
* *
33501900 TCCACAAGACATGTTAGAGCATCAACTCATAAATCACTTAAAATAACATAAGATAAGTCATATAC
66 TCCACAACACATGTTAGAACATCAACTCATAAATCACTTAAAATAACATAAGATAAGTCATATAC
*
33501965 ATGAACAACATCAGTTGAAATCATCAATTTCATGAACATAAAC
131 ATAAACAA-ATCAGTTGAAATCATCAATTTCATGAACATAAAC
33502008 ATATATTTCAATATGATTAAGCATTATATAATCCAAACATAAGTTTGGCACAAGCATAAGCATCA
1 ATATATTTCAATATGATTAAGCATTATATAATCCAAACATAAGTTTGGCACAAGCATAAGCATCA
* *
33502073 TCCACAACACATGTTAGAACATCAACTCATAAGTCACTTGAAATAACATAAGATAAGTCATATAC
66 TCCACAACACATGTTAGAACATCAACTCATAAATCACTTAAAATAACATAAGATAAGTCATATAC
33502138 ATAAACAAATCAGTTGAAATCATCAATTTCATGAACATAAAC
131 ATAAACAAATCAGTTGAAATCATCAATTTCATGAACATAAAC
33502180 ATA
1 ATA
33502183 CTTTCATTAA
Statistics
Matches: 169, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
172 37 0.22
173 132 0.78
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (172 bp):
ATATATTTCAATATGATTAAGCATTATATAATCCAAACATAAGTTTGGCACAAGCATAAGCATCA
TCCACAACACATGTTAGAACATCAACTCATAAATCACTTAAAATAACATAAGATAAGTCATATAC
ATAAACAAATCAGTTGAAATCATCAATTTCATGAACATAAAC
Found at i:33508081 original size:26 final size:26
Alignment explanation
Indices: 33508012--33508082 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
33508002 CGTTCCAACC
*
33508012 CACAGCTAGTGTGAGCAGACCCATTT
1 CACAGCTAGTGTGAGCATACCCATTT
* **
33508038 CACAGCTCGTGTGAGCATAGTCATTT
1 CACAGCTAGTGTGAGCATACCCATTT
* *
33508064 CATAGCTTGTGTGAGCATA
1 CACAGCTAGTGTGAGCATA
33508083 ACTATACAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (26 bp):
CACAGCTAGTGTGAGCATACCCATTT
Found at i:33515040 original size:26 final size:26
Alignment explanation
Indices: 33514970--33515066 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
33514960 CCTCTTTAAT
* *
33514970 AACTGGGG-AAAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
33514995 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
33515020 AACTGGGGTATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
33515046 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33515067 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
25 29 0.46
26 34 0.54
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:33515046 original size:51 final size:51
Alignment explanation
Indices: 33514970--33515066 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
33514960 CCTCTTTAAT
*
33514970 AACTGGGGAAAAGCCCTTTTTGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
33515020 AACTGGGGTATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGG-AAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
33515067 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 8 0.19
51 25 0.58
52 10 0.23
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (51 bp):
AACTGGGGAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:33515141 original size:20 final size:20
Alignment explanation
Indices: 33515116--33515162 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
33515106 TTATGAATTC
*
33515116 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
33515135 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
33515156 ATCATGT
1 ATCATGT
33515163 ATATCACATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:33518130 original size:46 final size:47
Alignment explanation
Indices: 33518063--33518231 Score: 190
Period size: 46 Copynumber: 3.6 Consensus size: 47
33518053 TGTAACCCGC
33518063 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAG-CGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGACGTTCACAT
*
33518109 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GAC--GTTCACAT
* * * *
33518159 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGACGTTCACAT
*
33518202 CCATAAGTGAACTCAGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
33518232 TTTCGGATGC
Statistics
Matches: 105, Mismatches: 7, Indels: 22
0.78 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
46 56 0.53
47 27 0.26
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGACGTTCACAT
Found at i:33518183 original size:93 final size:93
Alignment explanation
Indices: 33518071--33518242 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
33518061 GCCCATAAGT
* *
33518071 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCACATCCATAAGTGAACTCAGACTCAACTCA
33518135 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
33518164 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
**
33518229 CGATTTCGGATGCC
66 CGAGCTCGGATGCC
33518243 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:33525839 original size:26 final size:26
Alignment explanation
Indices: 33525768--33525890 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
33525758 CCTCTTTAAT
* **
33525768 AACTCGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
33525793 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
33525818 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
33525844 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
33525870 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33525891 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 32 0.36
26 56 0.64
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:33525878 original size:52 final size:51
Alignment explanation
Indices: 33525768--33525890 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
33525758 CCTCTTTAAT
* *
33525768 AACTCGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
33525818 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
33525870 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33525891 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 9 0.13
51 24 0.35
52 36 0.52
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATA
Found at i:33525976 original size:20 final size:20
Alignment explanation
Indices: 33525940--33525986 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
33525930 TTATGAATTC
**
33525940 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATACCATATCA
33525959 TATCATGTGCATACCATATCA
1 -ATCATGTGCATACCATATCA
33525980 ATCATGT
1 ATCATGT
33525987 ATATCATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATACCATATCA
Found at i:33535790 original size:20 final size:20
Alignment explanation
Indices: 33535767--33535807 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
33535757 GGACATTAAT
*
33535767 GTGTGAACAAGGGCACTGAA
1 GTGTGAACAAGGGCACCGAA
**
33535787 GTGTGAGTAAGGGCACCGAA
1 GTGTGAACAAGGGCACCGAA
33535807 G
1 G
33535808 AGCAAACTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.15, G:0.39, T:0.15
Consensus pattern (20 bp):
GTGTGAACAAGGGCACCGAA
Found at i:33537633 original size:24 final size:24
Alignment explanation
Indices: 33537600--33537697 Score: 117
Period size: 24 Copynumber: 4.0 Consensus size: 24
33537590 AACGCTATTA
*
33537600 GGAAAAGATTTAGGAGCTGATAAG
1 GGAAAGGATTTAGGAGCTGATAAG
*
33537624 GGAAAGGATTTAGGAGCTAATAAG
1 GGAAAGGATTTAGGAGCTGATAAG
* * * *
33537648 GGAGAGGCTTTAGGAGTTGATAAA
1 GGAAAGGATTTAGGAGCTGATAAG
33537672 GGAGAA-GATTTAGGAGCTGATCAAG
1 GGA-AAGGATTTAGGAGCTGAT-AAG
33537697 G
1 G
33537698 AGCAGGATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
24 57 0.93
25 4 0.07
ACGTcount: A:0.38, C:0.05, G:0.36, T:0.21
Consensus pattern (24 bp):
GGAAAGGATTTAGGAGCTGATAAG
Found at i:33545529 original size:24 final size:24
Alignment explanation
Indices: 33545502--33545589 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
33545492 AAGGCTGTCA
33545502 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
33545526 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * * *
33545550 GGGGAGGCTTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
33545574 GGAGAAGATTTAGGAG
1 GGAGAAGATTTAGGAG
33545590 TTGACCAAGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.34, C:0.05, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:33548799 original size:48 final size:48
Alignment explanation
Indices: 33548728--33548862 Score: 191
Period size: 48 Copynumber: 2.8 Consensus size: 48
33548718 CATTACGGAA
* * *
33548728 TACATTGATTTGGCTTCGGGCCATGATATCGGCACTTTAG-GTGCAAGT
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCAC-TTAGAATGCAAGC
* *
33548776 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGAATGCGAGC
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTAGAATGCAAGC
* *
33548824 TACATTGATTTGGCTTCAGGCCATGATATTGGCAATTAG
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTAG
33548863 GGTGTCAGAC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 3 0.04
48 75 0.96
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (48 bp):
TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTAGAATGCAAGC
Found at i:33574080 original size:46 final size:45
Alignment explanation
Indices: 33574030--33574202 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
33574020 TGGTTGAGCA
* *
33574030 TTCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCAAATG
* * * *
33574076 TTCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA-GATGTAACTAGG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCAA--ATG
* * *
33574120 CATCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAACG
1 -TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCAAATG
** *
33574167 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
33574203 GGCGGGTTAC
Statistics
Matches: 104, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
42 5 0.05
44 4 0.04
45 29 0.28
46 56 0.54
47 4 0.04
49 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (45 bp):
TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCAAATG
Found at i:33577226 original size:22 final size:22
Alignment explanation
Indices: 33577192--33577235 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
33577182 TGCTGCGATA
33577192 TCTACAGCATTGAGCCGTCCTG
1 TCTACAGCATTGAGCCGTCCTG
* *
33577214 TCTACGGCGTTGAGCCGTCCTG
1 TCTACAGCATTGAGCCGTCCTG
33577236 CTGACTTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.32, G:0.27, T:0.27
Consensus pattern (22 bp):
TCTACAGCATTGAGCCGTCCTG
Found at i:33583826 original size:27 final size:27
Alignment explanation
Indices: 33583796--33583848 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
33583786 GACCCCAGTT
*
33583796 TGTAAAATCAATGAAATACCCTTGTAG
1 TGTAAAATCAATGAAATACCCCTGTAG
* * *
33583823 TGTAAAATGACTGTAATACCCCTGTA
1 TGTAAAATCAATGAAATACCCCTGTA
33583849 TGGTAGAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (27 bp):
TGTAAAATCAATGAAATACCCCTGTAG
Found at i:33584122 original size:22 final size:22
Alignment explanation
Indices: 33584095--33584139 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
33584085 TGTTGCGATA
33584095 TCTACGGCATTGAGCTGTCCTG
1 TCTACGGCATTGAGCTGTCCTG
*
33584117 TCTACGGCGTTGAGCTGTCCTG
1 TCTACGGCATTGAGCTGTCCTG
33584139 T
1 T
33584140 TGACTTAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.29, T:0.33
Consensus pattern (22 bp):
TCTACGGCATTGAGCTGTCCTG
Found at i:33594707 original size:18 final size:17
Alignment explanation
Indices: 33594665--33594718 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 17
33594655 GTGAACCAGA
*
33594665 AAAAGAAATTGAAAAAG
1 AAAAGAGATTGAAAAAG
33594682 AGAAAGAGATTGAAGAAAG
1 A-AAAGAGATTGAA-AAAG
33594701 AAAAGAGAGTGTGAAAAA
1 AAAAGAGA-T-TGAAAAA
33594719 AACGAGTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.03
18 18 0.56
19 9 0.28
20 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.26, T:0.11
Consensus pattern (17 bp):
AAAAGAGATTGAAAAAG
Found at i:33596408 original size:51 final size:52
Alignment explanation
Indices: 33596348--33596445 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
33596338 TTTAGTTACT
* * *
33596348 TTAGTTAAAGTTTGCATCA-TAAATTATGACATGCATTATGTAACTCCCATG
1 TTAGTTAAAGTTTGCATCATTAAATTAAGACATGCAATAAGTAACTCCCATG
*
33596399 TTAGTTAAAGTTTGCATCATTAAATTAAGTCATGCAATAAGTAACTC
1 TTAGTTAAAGTTTGCATCATTAAATTAAGACATGCAATAAGTAACTC
33596446 ATTTGTTCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 19 0.45
52 23 0.55
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (52 bp):
TTAGTTAAAGTTTGCATCATTAAATTAAGACATGCAATAAGTAACTCCCATG
Found at i:33598575 original size:13 final size:15
Alignment explanation
Indices: 33598551--33598582 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
33598541 TATCTTATTT
33598551 TATTACTAATTAA-A
1 TATTACTAATTAACA
33598565 TATTA-TAATTAACA
1 TATTACTAATTAACA
33598579 TATT
1 TATT
33598583 TCCACTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTACTAATTAACA
Found at i:33599597 original size:15 final size:16
Alignment explanation
Indices: 33599574--33599609 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
33599564 TTTAGTGATT
*
33599574 CGGGTCGGGTCGGG-C
1 CGGGCCGGGTCGGGCC
33599589 CGGGCCGGGTCGGGCC
1 CGGGCCGGGTCGGGCC
33599605 CGGGC
1 CGGGC
33599610 TAAAAATACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.00, C:0.33, G:0.58, T:0.08
Consensus pattern (16 bp):
CGGGCCGGGTCGGGCC
Found at i:33600194 original size:17 final size:17
Alignment explanation
Indices: 33600174--33600217 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
33600164 AATATATTAA
33600174 TTTTAATATTTTATTTT
1 TTTTAATATTTTATTTT
*
33600191 TTTTAA-AATTTATTTT
1 TTTTAATATTTTATTTT
*
33600207 TGTTAAT-TTTT
1 TTTTAATATTTT
33600218 TTAATAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TTTTAATATTTTATTTT
Found at i:33601570 original size:8 final size:8
Alignment explanation
Indices: 33601557--33601584 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
33601547 TACATTTCTA
33601557 TTTTTTAT
1 TTTTTTAT
33601565 TTTTTTAT
1 TTTTTTAT
33601573 TTTTTTAT
1 TTTTTTAT
33601581 TTTT
1 TTTT
33601585 CTAGTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:33601592 original size:16 final size:15
Alignment explanation
Indices: 33601551--33601596 Score: 65
Period size: 16 Copynumber: 3.0 Consensus size: 15
33601541 CTATTTTACA
33601551 TTTCTATTTTTTATT
1 TTTCTATTTTTTATT
*
33601566 TTTTTATTTTTTTATT
1 TTTCTA-TTTTTTATT
*
33601582 TTTCTAGTTTTTATT
1 TTTCTATTTTTTATT
33601597 GTACTTGCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTCTATTTTTTATT
Found at i:33604506 original size:21 final size:24
Alignment explanation
Indices: 33604466--33604508 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
33604456 ATACGTTAAA
33604466 TAAAAAATACTTTGATCATTTTTT
1 TAAAAAATACTTTGATCATTTTTT
33604490 TAAAAAA-A-TTT-ATCATTTT
1 TAAAAAATACTTTGATCATTTT
33604509 ATACTATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 3 0.16
23 1 0.05
24 7 0.37
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (24 bp):
TAAAAAATACTTTGATCATTTTTT
Found at i:33608247 original size:16 final size:16
Alignment explanation
Indices: 33608205--33608248 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
33608195 TGATTCACTA
*
33608205 TAATAGAATAAAACTG
1 TAATAGAATAGAACTG
*
33608221 TAATTGAATAGAACTG
1 TAATAGAATAGAACTG
*
33608237 TAATAAAATAGA
1 TAATAGAATAGA
33608249 GTTGTAATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (16 bp):
TAATAGAATAGAACTG
Found at i:33608327 original size:44 final size:46
Alignment explanation
Indices: 33608242--33608332 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 46
33608232 AACTGTAATA
*
33608242 AAATAGAGTTGTAATCAGTAATTCAACTGTTTAGTTGAATGGAATG
1 AAATAGAGCTGTAATCAGTAATTCAACTGTTTAGTTGAATGGAATG
*** * *
33608288 AAATAGAGCTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGGTATG
1 AAATAGAGCTGTAATCAGTAATTCAACTGTTTAGTTGAATGGAATG
33608332 A
1 A
33608333 TGTTGTAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 22 0.56
45 3 0.08
46 14 0.36
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (46 bp):
AAATAGAGCTGTAATCAGTAATTCAACTGTTTAGTTGAATGGAATG
Found at i:33608523 original size:17 final size:17
Alignment explanation
Indices: 33608501--33608533 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33608491 AATTATTATT
*
33608501 AAATATAATTTAATAAA
1 AAATATAAATTAATAAA
33608518 AAATATAAATTAATAA
1 AAATATAAATTAATAA
33608534 CATTCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATAAATTAATAAA
Found at i:33608554 original size:58 final size:57
Alignment explanation
Indices: 33608434--33608559 Score: 154
Period size: 58 Copynumber: 2.2 Consensus size: 57
33608424 TTTTAATAAG
*
33608434 ATTATTATTGAAAATAATTTAATAAAAATAATAAATAATTTAACCATATTTTAACATA
1 ATTATTATTGAAAATAATTTAATAAAAATAATAAATAA-TTAACCATATCTTAACATA
*
33608492 ATTATTATT-AAATATAATTTAATAAAAA-ATATAAATTAA-TAA-CAT-TCTTAATATA
1 ATTATTATTGAAA-ATAATTTAATAAAAATA-ATAAA-TAATTAACCATATCTTAACATA
33608547 ATTATTATATGAA
1 ATTATTAT-TGAA
33608560 TTAAAAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
55 16 0.26
56 4 0.07
57 9 0.15
58 29 0.48
59 3 0.05
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (57 bp):
ATTATTATTGAAAATAATTTAATAAAAATAATAAATAATTAACCATATCTTAACATA
Found at i:33612988 original size:20 final size:21
Alignment explanation
Indices: 33612963--33613006 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
33612953 TACTAATAAG
33612963 TTTAGTATGATGACATTAT-T
1 TTTAGTATGATGACATTATCT
33612983 TTTAGTATGATGACATTATCT
1 TTTAGTATGATGACATTATCT
33613004 TTT
1 TTT
33613007 TAAATAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.52
Consensus pattern (21 bp):
TTTAGTATGATGACATTATCT
Found at i:33614940 original size:47 final size:47
Alignment explanation
Indices: 33614878--33615005 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 47
33614868 GTGTTAATAA
* * ** *
33614878 TACCTTGATTTGGCTACGAGCCATGATATAGGTATT-TTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCCAG-GAGAAGT
* *
33614925 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCCAGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCCAGGAGAAGT
33614972 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
33615006 CTTATCGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 71 0.99
48 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCCAGGAGAAGT
Found at i:33627392 original size:28 final size:28
Alignment explanation
Indices: 33627352--33627410 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
33627342 GTCATTATCA
33627352 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
33627380 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
33627408 ACC
1 ACC
33627411 TCATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:33629496 original size:22 final size:23
Alignment explanation
Indices: 33629471--33629516 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
33629461 CAACCAAATC
33629471 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
33629493 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
33629516 A
1 A
33629517 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:33629522 original size:23 final size:23
Alignment explanation
Indices: 33629478--33629522 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
33629468 ATCAATTCAA
*
33629478 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
33629501 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
33629523 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:33635734 original size:28 final size:28
Alignment explanation
Indices: 33635694--33635756 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
33635684 GTCATTATCA
33635694 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
33635722 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
33635750 ACCCCAT
1 ACCCCAT
33635757 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:33636704 original size:19 final size:19
Alignment explanation
Indices: 33636680--33636734 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
33636670 CACTGTCATT
33636680 CATCGTAATAAAATTTGTC
1 CATCGTAATAAAATTTGTC
33636699 CATCGTAATAAAATTTGTC
1 CATCGTAATAAAATTTGTC
* *
33636718 CACCTTAATTAAAATTT
1 CATCGTAA-TAAAATTT
33636735 TTATTAACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 25 0.76
20 8 0.24
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (19 bp):
CATCGTAATAAAATTTGTC
Found at i:33639987 original size:18 final size:18
Alignment explanation
Indices: 33639961--33639995 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33639951 GTATTATTGT
* *
33639961 TAAATTTTATTATTAAAA
1 TAAAATTTAATATTAAAA
33639979 TAAAATTTAATATTAAA
1 TAAAATTTAATATTAAA
33639996 TAATTTATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:33640045 original size:29 final size:30
Alignment explanation
Indices: 33639970--33640034 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
33639960 TTAAATTTTA
* *
33639970 TTATTAAAATAA-AATTTAATATTAAATAAT
1 TTATTAAAATAATAAATT-ATATTAAACAAT
33640000 TTATTAAAATAATAAATTATATT-AACAAT
1 TTATTAAAATAATAAATTATATTAAACAAT
33640029 TTATTA
1 TTATTA
33640035 TATTATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 11 0.34
30 17 0.53
31 4 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (30 bp):
TTATTAAAATAATAAATTATATTAAACAAT
Found at i:33640083 original size:28 final size:27
Alignment explanation
Indices: 33640052--33640114 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
33640042 AAATATAAAT
*
33640052 AATTAAATATGTGTTTAATAATATTGAA
1 AATTAAATATGTG-ATAATAATATTGAA
* * *
33640080 AATTATAATATTTGATATTAATATTTAA
1 AATTA-AATATGTGATAATAATATTGAA
33640108 AATTAAA
1 AATTAAA
33640115 ATTAAAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 2 0.07
28 21 0.70
29 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.44
Consensus pattern (27 bp):
AATTAAATATGTGATAATAATATTGAA
Found at i:33640112 original size:13 final size:13
Alignment explanation
Indices: 33640070--33640125 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
33640060 ATGTGTTTAA
*
33640070 TAATATTGAAAATT
1 TAATATTTAAAA-T
* *
33640084 ATAATATTTGATAT
1 -TAATATTTAAAAT
33640098 TAATATTTAAAAT
1 TAATATTTAAAAT
*
33640111 TAA-AATTAAAAT
1 TAATATTTAAAAT
33640123 TAA
1 TAA
33640126 AAATTTATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
12 11 0.31
13 14 0.40
14 1 0.03
15 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (13 bp):
TAATATTTAAAAT
Found at i:33640604 original size:31 final size:31
Alignment explanation
Indices: 33640518--33640595 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
33640508 ATGCGATTTG
* * * *
33640518 ATACATG-AACTTTAATT-TGGTGCAATTAT
1 ATACATGAAACTTTAATTGTAGTTCAAGTGT
* *
33640547 ATATATGAAACTTTGATTGTAGTTCAAGTGT
1 ATACATGAAACTTTAATTGTAGTTCAAGTGT
33640578 ATACATGAAACTTTAATT
1 ATACATGAAACTTTAATT
33640596 TTCATTCAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 6 0.15
30 9 0.23
31 24 0.62
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (31 bp):
ATACATGAAACTTTAATTGTAGTTCAAGTGT
Found at i:33648766 original size:671 final size:673
Alignment explanation
Indices: 33647660--33648992 Score: 1832
Period size: 671 Copynumber: 2.0 Consensus size: 673
33647650 AATCATTCGG
* * * * * * * * * *
33647660 AGGCTAACTACTTAGGTAATAGGGGATCTAACCCGTACTCTAAAACCTATAATTCGGGGTGGCAA
1 AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAACCAAAAATTCGAGGTAGCAA
* * *
33647725 GATCACCCCAATCTTAGGTGGGGAGGGAACCATAGGGGTCCCTCCAACCAAGGAGTACCCATGCA
66 GATCACCCCAATATTAAGTGGGGAGGGAACCATAGGGGTACCTCCAACCAAGGAGTACCCATGCA
* * * * * *
33647790 TGGCCCGTTTAAGCCCTCAATTATAGAAATGTTTAGTGGATTTGTATGTGCATGAATGGTGATTT
131 TGACCCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGACTTGTATGTGCATGAACGGTGATTG
* * *
33647855 GTTAAAAAATAACTTATTTTTAATTTTCTTCCAGTATAAATTATACGGTGAAGGAAGACTCCATT
196 GTTAAAAAATAACTTATTTTAAATTTTCTTCAAGTATAAATTATACGGTGAAGGAAGACTACATT
* * * * * *
33647920 TTTCTTTTAGAATTTTGCCTTTGTTTCCGTTGACTAGTTTTGGGTGGTTGAAACTCCATTTTGCA
261 TTTCGTTCAGAATTTTGCCATTGTTTCCGATCACTAGTTTTGGGTGGTGGAAACTCCATTTTGCA
* * * ***
33647985 TGTTAGAACAATTATGGTTTTGGCCTGCTTAAAGGCTATTCTTCGAATGGTAATGTTAAATTTCC
326 TGTTAGAAAAATTATGGTTTTGGCCTGCTTAAAGACTATTCTTCGAATGGAAACAATAAATTTCC
* *
33648050 TAAACACTCTTTTGGCCGTAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTGTAGAGAAAGCT
391 TAAACACTCTTTTGGCCATAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTATAGAGAAAGCT
* * * *
33648115 TATCTTAAAATTTTAAAGTAGATAAGAATCTCCCTTTCTGTTGTGAATGGTGCATGTTACAATAG
456 TATCTTAAAATTTTAAAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAATAG
* *
33648180 TTGTTAGATTCTTATCTATATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTTATG
521 TTGTTAGATTCTTATATACATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTTATG
* * *
33648245 AATATGGAATGTATATAGAAATGAGCTCGGCATGATCGCAAGCTCCCAATCAGCCCCTTCTAACC
586 AATATGGAATGTATATAGAAATGAGCTCAGCACGATCGCAAGCTCCCAATCAACCCCTTCTAACC
33648310 AGCTCAAATGTAGAGATAACATGA
651 A-CTCAAATGTAGAGATAACATGA
* *
33648334 AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAA-CAAAAATTTGAGG-AGCGA
1 AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAACCAAAAATTCGAGGTAGCAA
* * * *
33648397 GATCACCCCAATATTAAGTGGGGAGGGAA-CA-AGGGGGTACCTTCGACCAATGAGTACCCGTGC
66 GATCACCCCAATATTAAGTGGGGAGGGAACCATA-GGGGTACCTCCAACCAAGGAGTACCCATGC
* * *
33648460 ATGACTCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGACTTGTGTTTGCATGAACGGTGATT
130 ATGACCCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGACTTGTATGTGCATGAACGGTGATT
* * * *
33648525 GGTTAAAGAATAATTTATTTTAAATTTTCTTTAAGTATAAATTATATGGTGAAGGAAGACTACAT
195 GGTTAAAAAATAACTTATTTTAAATTTTCTTCAAGTATAAATTATACGGTGAAGGAAGACTACAT
* * * *
33648590 TTTTCGTTCAGAATTTTTCCATTGTTTCC-ATCACTAGTTTTGGGTGGTGGAAAGTCCTTTTTTC
260 TTTTCGTTCAGAATTTTGCCATTGTTTCCGATCACTAGTTTTGGGTGGTGGAAACTCCATTTTGC
* * * * * *
33648654 ATTTTAGAAAAATTATGGTTTTGGCTTGCTTAGAGACTGTTCCTTTGAGTGGAAACAATAAATTT
325 ATGTTAGAAAAATTATGGTTTTGGCCTGCTTAAAGACTATT-CTTCGAATGGAAACAATAAATTT
* * * *
33648719 CCTAAACATTTCTTTT-GTCATAGCTTGTTATTTAATTTATGATTTGGACATTGCTATAGAGAAA
389 CCTAAACA-CTCTTTTGGCCATAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTATAGAGAAA
* **
33648783 GCTTATCTTAAAGTTTTGGAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAA
453 GCTTATCTTAAAATTTTAAAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAA
* * * *
33648848 TAGTTGTTTGATTCTTATATACATTAAAGACATTAGTTGATGTTGTGGCTTATTTCTTTGTATTT
518 TAGTTGTTAGATTCTTATATACATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTT
* * * * *
33648913 TTTAATATGGAATGTATATAGAAATTAGCTCAGCACGATTGTAAGCTCCCAATCAACCCCTTCTA
583 ATGAATATGGAATGTATATAGAAATGAGCTCAGCACGATCGCAAGCTCCCAATCAACCCCTTCTA
33648978 ACCACTCAAATGTAG
648 ACCACTCAAATGTAG
33648993 GGCATGACGG
Statistics
Matches: 572, Mismatches: 84, Indels: 10
0.86 0.13 0.02
Matches are distributed among these distances:
670 76 0.13
671 412 0.72
672 36 0.06
673 9 0.02
674 39 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (673 bp):
AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAACCAAAAATTCGAGGTAGCAA
GATCACCCCAATATTAAGTGGGGAGGGAACCATAGGGGTACCTCCAACCAAGGAGTACCCATGCA
TGACCCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGACTTGTATGTGCATGAACGGTGATTG
GTTAAAAAATAACTTATTTTAAATTTTCTTCAAGTATAAATTATACGGTGAAGGAAGACTACATT
TTTCGTTCAGAATTTTGCCATTGTTTCCGATCACTAGTTTTGGGTGGTGGAAACTCCATTTTGCA
TGTTAGAAAAATTATGGTTTTGGCCTGCTTAAAGACTATTCTTCGAATGGAAACAATAAATTTCC
TAAACACTCTTTTGGCCATAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTATAGAGAAAGCT
TATCTTAAAATTTTAAAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAATAG
TTGTTAGATTCTTATATACATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTTATG
AATATGGAATGTATATAGAAATGAGCTCAGCACGATCGCAAGCTCCCAATCAACCCCTTCTAACC
ACTCAAATGTAGAGATAACATGA
Found at i:33650177 original size:40 final size:40
Alignment explanation
Indices: 33650123--33650332 Score: 188
Period size: 41 Copynumber: 5.1 Consensus size: 40
33650113 GCAAAAATTG
* *
33650123 TAAAACACAAAGCAATAGTGGC-ATTTTTGTCAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGATTTTTGT-AAAACGCCGC
* *
33650164 TAAAAACTGAGCAATAGCGGCGTTTTTTTGTTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-ATTTTTG-TAAAACGCCGC
* * * *
33650206 TAAAAACAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGATTTTTGTAAAACGCCGC
* * * * *
33650246 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAA-AACAGAGCAATAGCGGCGATTTTTGTAAAACGCCGC
* * * * * *
33650287 TAAAGACCAGAGTATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAA-AACAGAGCAATAGCGGCGATTTTTGTAAAACGCCGC
33650328 TAAAA
1 TAAAA
33650333 GTCATGTAAC
Statistics
Matches: 154, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
40 28 0.18
41 89 0.58
42 36 0.23
43 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGATTTTTGTAAAACGCCGC
Found at i:33650191 original size:41 final size:40
Alignment explanation
Indices: 33650155--33650332 Score: 248
Period size: 41 Copynumber: 4.3 Consensus size: 40
33650145 ATTTTTGTCA
* * * * *
33650155 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTTTGTTA
1 AAACGCCGCTAAAAACAGAGCATTAGCGGCG--CTTTTGGTG
33650197 AAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTG
1 AAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTG
*
33650237 AAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTG
1 AAACGCCGCTAAA-AACAGAGCATTAGCGGCGCTTTTGGTG
* *
33650278 AAACGCCGCTAAAGACCAGAGTATTAGCGGCGCTTTTGGTG
1 AAACGCCGCTAAA-AACAGAGCATTAGCGGCGCTTTTGGTG
33650319 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
33650333 GTCATGTAAC
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 20 0.16
41 79 0.62
42 29 0.23
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.21
Consensus pattern (40 bp):
AAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTG
Found at i:33654197 original size:671 final size:673
Alignment explanation
Indices: 33653091--33654423 Score: 1841
Period size: 671 Copynumber: 2.0 Consensus size: 673
33653081 AATCATTCGG
* * * * * * * * * *
33653091 AGGCTAACTACTTAGGTAATAGGGGATCTAACCCGTACTCTAAAACCTATAATTCGGGGTGGCAA
1 AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAACCAAAAATTCGAGGTAGCAA
* * *
33653156 GATCACCCCAATCTTAGGTGGGGAGGGAACCATAGGGGTCCCTCCAACCAAGGAGTACCCATGCA
66 GATCACCCCAATATTAAGTGGGGAGGGAACCATAGGGGTACCTCCAACCAAGGAGTACCCATGCA
* * * * *
33653221 TGGCCCGTTTAAGCCCTCAATTATAGAAATGTTTAGTGGATTTGTATGTGCATGAATGGTGATTT
131 TGACCCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGATTTGTATGTGCATGAACGGTGATTG
* * *
33653286 GTTAAAAAATAACTTATTTTTAATTTTCTTCCAGTATAAATTATACGGTGAAGGAAGACTCCATT
196 GTTAAAAAATAACTTATTTTAAATTTTCTTCAAGTATAAATTATACGGTGAAGGAAGACTACATT
* * * * * *
33653351 TTTCTTTTAGAATTTTGCCTTTGTTTCCGTTGACTAGTTTTGGGTGGTTGAAACTCCATTTTGCA
261 TTTCGTTCAGAATTTTGCCATTGTTTCCGATCACTAGTTTTGGGTGGTGGAAACTCCATTTTGCA
* * * ***
33653416 TGTTAGAACAATTATGGTTTTGGCCTGCTTAAAGGCTATTCTTCGAATGGTAATGTTAAATTTCC
326 TGTTAGAAAAATTATGGTTTTGGCCTGCTTAAAGACTATTCTTCGAATGGAAACAATAAATTTCC
* *
33653481 TAAACACTCTTTTGGCCGTAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTGTAGAGAAAGCT
391 TAAACACTCTTTTGGCCATAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTATAGAGAAAGCT
* * * *
33653546 TATCTTAAAATTTTAAAGTAGATAAGAATCTCCCTTTCTGTTGTGAATGGTGCATGTTACAATAG
456 TATCTTAAAATTTTAAAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAATAG
* *
33653611 TTGTTAGATTCTTATCTATATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTTATG
521 TTGTTAGATTCTTATATACATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTTATG
* * *
33653676 AATATGGAATGTATATAGAAATGAGCTCGGCATGATCGCAAGCTCCCAATCAGCCCCTTCTAACC
586 AATATGGAATGTATATAGAAATGAGCTCAGCACGATCGCAAGCTCCCAATCAACCCCTTCTAACC
33653741 AGCTCAAATGTAGAGATAACATGA
651 A-CTCAAATGTAGAGATAACATGA
* *
33653765 AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAA-CAAAAATTTGAGG-AGCGA
1 AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAACCAAAAATTCGAGGTAGCAA
* * * *
33653828 GATCACCCCAATATTAAGTGGGGAGGGAA-CA-AGGGGGTACCTTCGACCAATGAGTACCCGTGC
66 GATCACCCCAATATTAAGTGGGGAGGGAACCATA-GGGGTACCTCCAACCAAGGAGTACCCATGC
* * *
33653891 ATGACTCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGATTTGTGTTTGCATGAACGGTGATT
130 ATGACCCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGATTTGTATGTGCATGAACGGTGATT
* * * *
33653956 GGTTAAAGAATAATTTATTTTAAATTTTCTTTAAGTATAAATTATATGGTGAAGGAAGACTACAT
195 GGTTAAAAAATAACTTATTTTAAATTTTCTTCAAGTATAAATTATACGGTGAAGGAAGACTACAT
* * * *
33654021 TTTTCGTTCAGAATTTTTCCATTGTTTCC-ATCACTAGTTTTGGGTGGTGGAAAGTCCTTTTTTC
260 TTTTCGTTCAGAATTTTGCCATTGTTTCCGATCACTAGTTTTGGGTGGTGGAAACTCCATTTTGC
* * * * * *
33654085 ATTTTAGAAAAATTATGGTTTTGGCTTGCTTAGAGACTGTTCCTTTGAGTGGAAACAATAAATTT
325 ATGTTAGAAAAATTATGGTTTTGGCCTGCTTAAAGACTATT-CTTCGAATGGAAACAATAAATTT
* * * *
33654150 CCTAAACATTTCTTTT-GTCATAGCTTGTTATTTAATTTATGATTTGGACATTGCTATAGAGAAA
389 CCTAAACA-CTCTTTTGGCCATAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTATAGAGAAA
* **
33654214 GCTTATCTTAAAGTTTTGGAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAA
453 GCTTATCTTAAAATTTTAAAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAA
* * * *
33654279 TAGTTGTTTGATTCTTATATACATTAAAGACATTAGTTGATGTTGTGGCTTATTTCTTTGTATTT
518 TAGTTGTTAGATTCTTATATACATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTT
* * * * *
33654344 TTTAATATGGAATGTATATAGAAATTAGCTCAGCACGATTGTAAGCTCCCAATCAACCCCTTCTA
583 ATGAATATGGAATGTATATAGAAATGAGCTCAGCACGATCGCAAGCTCCCAATCAACCCCTTCTA
33654409 ACCACTCAAATGTAG
648 ACCACTCAAATGTAG
33654424 GGCATGACGG
Statistics
Matches: 573, Mismatches: 83, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
670 76 0.13
671 413 0.72
672 36 0.06
673 9 0.02
674 39 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (673 bp):
AGGCCAACTACTGAGGTAATAGGGGATATAACCCATACCCCAAAACCAAAAATTCGAGGTAGCAA
GATCACCCCAATATTAAGTGGGGAGGGAACCATAGGGGTACCTCCAACCAAGGAGTACCCATGCA
TGACCCGTTTAAGCCCTCAATTATAAAAAAGTTTAGTGGATTTGTATGTGCATGAACGGTGATTG
GTTAAAAAATAACTTATTTTAAATTTTCTTCAAGTATAAATTATACGGTGAAGGAAGACTACATT
TTTCGTTCAGAATTTTGCCATTGTTTCCGATCACTAGTTTTGGGTGGTGGAAACTCCATTTTGCA
TGTTAGAAAAATTATGGTTTTGGCCTGCTTAAAGACTATTCTTCGAATGGAAACAATAAATTTCC
TAAACACTCTTTTGGCCATAGCTTGTTATTTAAGTTATGATTTGGAAATTGCTATAGAGAAAGCT
TATCTTAAAATTTTAAAGCAGATAAGAATCTCCCTTTCTATTGTAAATAGTGCATGTTACAATAG
TTGTTAGATTCTTATATACATTAAAGAAATTAGTTGATGTTGTGGCTGATCTCTTTGTATTTATG
AATATGGAATGTATATAGAAATGAGCTCAGCACGATCGCAAGCTCCCAATCAACCCCTTCTAACC
ACTCAAATGTAGAGATAACATGA
Found at i:33655609 original size:40 final size:40
Alignment explanation
Indices: 33655565--33655763 Score: 184
Period size: 41 Copynumber: 4.9 Consensus size: 40
33655555 TAAAACACAA
*
33655565 AGCAATAGTGGC-ATTTTTGTCAAAACGCCGCTAAAAACCG
1 AGCAATAGCGGCGATTTTTGT-AAAACGCCGCTAAAAACCG
* *
33655605 AGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAAACAG
1 AGCAATAGCGGCGATTTTTG-TAAAACGCCGCTAAAAACCG
* * * * *
33655646 AGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGACCAG
1 AGCAATAGCGGCGATTTTTGTAAAACGCCGCTAAAAACC-G
* * * * * *
33655687 AGCATTAGCGACGCTTTTGGTGAAACGCCGCTAAAGACCAG
1 AGCAATAGCGGCGATTTTTGTAAAACGCCGCTAAAAACC-G
* * * * *
33655728 AGTATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAA
1 AGCAATAGCGGCGATTTTTGTAAAACGCCGCTAAAA
33655764 GTCATGTAAC
Statistics
Matches: 143, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 27 0.19
41 115 0.80
42 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (40 bp):
AGCAATAGCGGCGATTTTTGTAAAACGCCGCTAAAAACCG
Found at i:33655623 original size:41 final size:41
Alignment explanation
Indices: 33655587--33655763 Score: 259
Period size: 41 Copynumber: 4.3 Consensus size: 41
33655577 ATTTTTGTCA
* * * *
33655587 AAACGCCGCTAAAAACC-GAGCAATAGCGGCGTTTTTTGTTA
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCG-CTTTTGGTG
33655628 AAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGTG
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTG
* *
33655668 AAACGCCGCTAAAGACCAGAGCATTAGCGACGCTTTTGGTG
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTG
* *
33655709 AAACGCCGCTAAAGACCAGAGTATTAGCGGCGCTTTTGGTG
1 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTG
33655750 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
33655764 GTCATGTAAC
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
40 21 0.17
41 104 0.83
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTG
Done.