Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 105 of 259
Found at i:33971954 original size:81 final size:81
Alignment explanation
Indices: 33971841--33972001 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 81
33971831 TTTCACAATC
* * * *** *
33971841 GAGGGTAAAATAGTAATTTTTTAAACTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAAC
1 GAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACAATAATTCTATAAATTAAGGGTAAAAC
*
33971906 GGTAATTTTATAAATT
66 AGTAATTTTATAAATT
* *
33971922 GAGGGTAAAACGGTAATTCTATAAA-TCGAGGGTAAAACAATAATTCTGTAAATTAAGGGTAAAA
1 GAGGGTAAAACAGTAATTCTATAAACT-GAGGGTAAAACAATAATTCTATAAATTAAGGGTAAAA
33971986 CAGTAATTTTATAAAT
65 CAGTAATTTTATAAAT
33972002 CGATGGTACT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 68 0.99
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.32
Consensus pattern (81 bp):
GAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACAATAATTCTATAAATTAAGGGTAAAAC
AGTAATTTTATAAATT
Found at i:33975229 original size:20 final size:19
Alignment explanation
Indices: 33975200--33975239 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
33975190 CCTTGTTTGC
33975200 AAAATTTTCCTATTTTTCT
1 AAAATTTTCCTATTTTTCT
33975219 AAAACTTTTCCTATTTTTCT
1 AAAA-TTTTCCTATTTTTCT
33975239 A
1 A
33975240 TTTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (19 bp):
AAAATTTTCCTATTTTTCT
Found at i:33979415 original size:39 final size:40
Alignment explanation
Indices: 33979361--33979460 Score: 130
Period size: 39 Copynumber: 2.5 Consensus size: 40
33979351 TGGATGATAA
*
33979361 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAAT
* ** *
33979400 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAAT
**
33979440 CCGGGCTAAGTCTTGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
33979461 ATTGTGCGAG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 31 0.58
40 22 0.42
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAAT
Found at i:33979458 original size:40 final size:39
Alignment explanation
Indices: 33979361--33979511 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
33979351 TGGATGATAA
* ** * *
33979361 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
33979400 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
** *
33979440 CCGGGCTAAGTCTTGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* * * *
33979480 CTGGGCTATGTCCAGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
33979512 AGTTATATCC
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 31 0.33
40 60 0.63
41 2 0.02
42 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:33987496 original size:39 final size:38
Alignment explanation
Indices: 33987442--33987590 Score: 169
Period size: 39 Copynumber: 3.8 Consensus size: 38
33987432 TGGATGATAA
* * *
33987442 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCAT-TGTGCGAGTTACTAAT
33987481 CCGGGCTAAGTCCCG-AGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-AAT
33987520 CCGGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTA--CTAAT
* *
33987559 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGT
33987591 AGTTATATCC
Statistics
Matches: 97, Mismatches: 5, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
38 18 0.19
39 57 0.59
40 20 0.21
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAT
Found at i:33987572 original size:78 final size:79
Alignment explanation
Indices: 33987442--33987590 Score: 198
Period size: 78 Copynumber: 1.9 Consensus size: 79
33987432 TGGATGATAA
* *
33987442 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAATCCGGGCTAAGTCCCG-AGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGA
33987506 GCGAGTTACTAAAT
66 GCGAGTTACTAAAT
* * *
33987520 CCGGGCTAAGT-CCGAAGGCAAT-TGTGCGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-ATCTGCGCGAGTGA--CTAATCCGGGCTAAGTCCCGAAGGCATT
33987582 TGAGCGAGT
63 TGAGCGAGT
33987591 AGTTATATCC
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
77 16 0.26
78 27 0.44
79 19 0.31
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACTAAAT
Found at i:33995561 original size:38 final size:38
Alignment explanation
Indices: 33995475--33995612 Score: 148
Period size: 38 Copynumber: 3.8 Consensus size: 38
33995465 TGGATGATAA
* * * *
33995475 CGGGCTAAGTCCGAAGG-ATCTGCGCTAGTGACTAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATC
33995512 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AATC
33995551 CGGGCT-AGTCCGAAGGCATTT-T-CGAGTT-CT--T-
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATC
* *
33995582 CGGGCTATGTCCTGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCC-GAAGGCATTTGTGCGAGT
33995613 AGCTATATCG
Statistics
Matches: 89, Mismatches: 6, Indels: 14
0.82 0.06 0.13
Matches are distributed among these distances:
31 6 0.07
32 5 0.06
33 10 0.11
35 7 0.08
36 6 0.07
37 18 0.20
38 27 0.30
39 10 0.11
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (38 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATC
Found at i:33995755 original size:1 final size:1
Alignment explanation
Indices: 33995749--33995815 Score: 71
Period size: 1 Copynumber: 67.0 Consensus size: 1
33995739 TATTCGCTCA
* * * * ** *
33995749 TTTTTTTTTTTTTTTTTTGTATGTTTTTTTTTTTTTTTTTTTTTTTATTTGATTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33995814 TT
1 TT
33995816 ATGCTAATTA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.04, C:0.00, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:33995785 original size:26 final size:25
Alignment explanation
Indices: 33995749--33995815 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 25
33995739 TATTCGCTCA
*
33995749 TTTTTTTTTTTTTTTTTTGTATGTTT
1 TTTTTTTTTTTTTTTTTTGTAT-TTG
*
33995775 TTTTTTTTTTTTTTTTTTTTATTTG
1 TTTTTTTTTTTTTTTTTTGTATTTG
* *
33995800 ATTTTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTT
33995816 ATGCTAATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 16 0.43
26 21 0.57
ACGTcount: A:0.04, C:0.00, G:0.06, T:0.90
Consensus pattern (25 bp):
TTTTTTTTTTTTTTTTTTGTATTTG
Found at i:33995789 original size:28 final size:28
Alignment explanation
Indices: 33995749--33995815 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
33995739 TATTCGCTCA
* *
33995749 TTTTTTTTTTTTTTTTTTGTATGTTTTT
1 TTTTTTTTTTTTTTTTTTATATGATTTT
*
33995777 TTTTTTTTTTTTTTTTTTATTTGATTTT
1 TTTTTTTTTTTTTTTTTTATATGATTTT
*
33995805 TTTTTGTTTTT
1 TTTTTTTTTTT
33995816 ATGCTAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.04, C:0.00, G:0.06, T:0.90
Consensus pattern (28 bp):
TTTTTTTTTTTTTTTTTTATATGATTTT
Found at i:34006222 original size:29 final size:29
Alignment explanation
Indices: 34006177--34006435 Score: 191
Period size: 29 Copynumber: 8.9 Consensus size: 29
34006167 ATGTGCTAAA
*
34006177 CGATGGTCGTAACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* *
34006206 CGGTGGTCGAAACCATCCCTTTTCATTAAT
1 CGATGGTCGAAACCATCCCTTTTCA-TATT
* * ** *
34006236 CGATAGTTGTCACCATCCCTTTTACTTA-T
1 CGATGGTCGAAACCATCCCTTTT-CATATT
* * * * *
34006265 CGATAGTTGAATCTATCCCGTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* * * *
34006294 CGATAGCCGAAGCTATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* * **
34006323 CAATGGTTGTCACCATCCCTTTTCATAGTT
1 CGATGGTCGAAACCATCCCTTTTCATA-TT
** *
34006353 -GATGGTCGTCACCATCCCTTTTCATAAT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* * * *
34006381 CAATAGTCGAAGCTATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* *
34006410 CGATAGGT-GAAGCTATCCCTTTTCAT
1 CGAT-GGTCGAAACCATCCCTTTTCAT
34006436 TGGTTGATGA
Statistics
Matches: 185, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
28 4 0.02
29 153 0.83
30 27 0.15
31 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (29 bp):
CGATGGTCGAAACCATCCCTTTTCATATT
Found at i:34006376 original size:87 final size:87
Alignment explanation
Indices: 34006177--34006415 Score: 275
Period size: 87 Copynumber: 2.7 Consensus size: 87
34006167 ATGTGCTAAA
* * * * * *
34006177 CGATGGTCGTAACCATCCCTTTTCATATTCGGTGGTCGAAACCATCCCTTTTCATTAATCGATAG
1 CGATGGTCGTAACCATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCA-TATTCAATAG
*
34006242 TTGTCACCATCCCTTTTACTTAT
65 TTGTCACCATCCCTTTTACATAT
* * * * * *
34006265 CGATAGTTG-AATCTATCCCGTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTCAATGG
1 CGATGGTCGTAA-CCATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATATTCAATAG
34006329 TTGTCACCATCCCTTTT-CATAGT
65 TTGTCACCATCCCTTTTACATA-T
* * * * *
34006352 TGATGGTCGTCACCATCCCTTTTCATAATCAATAGTCGAAGCTATCCCTTTTCATATTCGATAG
1 CGATGGTCGTAACCATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATATTCAATAG
34006416 GTGAAGCTAT
Statistics
Matches: 124, Mismatches: 24, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
86 3 0.02
87 78 0.63
88 43 0.35
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (87 bp):
CGATGGTCGTAACCATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATATTCAATAGT
TGTCACCATCCCTTTTACATAT
Found at i:34006428 original size:87 final size:88
Alignment explanation
Indices: 34006279--34006444 Score: 221
Period size: 87 Copynumber: 1.9 Consensus size: 88
34006269 AGTTGAATCT
* * *
34006279 ATCCCGTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTCAATGGTTGTCACCATCCCTT
1 ATCCCGTTTCATAATCAATAGCCGAAGCTATCCCTTTTCATATTCAATGGTTGTAACCATCCCTT
34006344 TTCA-TAGTTGATGGTCGTCACC
66 TTCATTAGTTGATGGTCGTCACC
* * * *
34006366 ATCCCTTTTCATAATCAATAGTCGAAGCTATCCCTTTTCATATTCGATAGG-TG-AAGCTATCCC
1 ATCCCGTTTCATAATCAATAGCCGAAGCTATCCCTTTTCATATTCAAT-GGTTGTAA-CCATCCC
*
34006429 TTTTCATTGGTTGATG
64 TTTTCATTAGTTGATG
34006445 ATAGCCGATA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
86 1 0.01
87 57 0.84
88 10 0.15
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (88 bp):
ATCCCGTTTCATAATCAATAGCCGAAGCTATCCCTTTTCATATTCAATGGTTGTAACCATCCCTT
TTCATTAGTTGATGGTCGTCACC
Found at i:34006970 original size:28 final size:29
Alignment explanation
Indices: 34006938--34006992 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
34006928 TACTTTTAAA
*
34006938 TAACAACTAATAT-ATCAA-ATTCATCATT
1 TAACAACTAAAATCA-CAAGATTCATCATT
*
34006966 TAACATCTAAAATCACAAGATTCATCA
1 TAACAACTAAAATCACAAGATTCATCA
34006993 ATGGAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.31
Consensus pattern (29 bp):
TAACAACTAAAATCACAAGATTCATCATT
Found at i:34007846 original size:29 final size:29
Alignment explanation
Indices: 34007804--34007861 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
34007794 TAAATATATG
34007804 TATAATATCTCTTTGGAACTCACTAAGTT
1 TATAATATCTCTTTGGAACTCACTAAGTT
34007833 TATAATATCTCTTTGGAACTCACTAAGTT
1 TATAATATCTCTTTGGAACTCACTAAGTT
34007862 CATATGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (29 bp):
TATAATATCTCTTTGGAACTCACTAAGTT
Found at i:34011450 original size:20 final size:21
Alignment explanation
Indices: 34011405--34011450 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
34011395 ATCATGGATG
*
34011405 TATTATGCTAGAAATTAGAAA
1 TATTATGCTAGAAAATAGAAA
*
34011426 T-TTATGGTAGAAAAT-GAAA
1 TATTATGCTAGAAAATAGAAA
34011445 TATTAT
1 TATTAT
34011451 TGATAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 5 0.23
20 16 0.73
21 1 0.05
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.37
Consensus pattern (21 bp):
TATTATGCTAGAAAATAGAAA
Found at i:34017162 original size:41 final size:42
Alignment explanation
Indices: 34017058--34017175 Score: 123
Period size: 41 Copynumber: 2.8 Consensus size: 42
34017048 TGTGTTCTCA
** * **
34017058 TGTAAGACCACATCTGGGACGTTGGCATCGATAAGTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTACG
* * * *
34017101 TGTAAGACTATGTTTAGGACATCGGCATCGTATTTGATT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTACG
*
34017142 TGTAAGACCCTGTCTGGGACATTGGCATCG-ATTT
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTT
34017176 ATCGATATGT
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
40 4 0.07
41 27 0.44
42 7 0.11
43 23 0.38
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTACG
Found at i:34047590 original size:40 final size:41
Alignment explanation
Indices: 34047546--34047662 Score: 166
Period size: 40 Copynumber: 2.9 Consensus size: 41
34047536 GGATATAGCT
* * *
34047546 ACTCGCTCAAATGCCTTCAGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* * *
34047586 ACTCGAACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
34047626 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAG
34047663 TCACTAGCGC
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
40 64 0.97
41 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:34047682 original size:39 final size:40
Alignment explanation
Indices: 34047553--34047694 Score: 135
Period size: 40 Copynumber: 3.6 Consensus size: 40
34047543 GCTACTCGCT
* * * * * *
34047553 CAAATGCCTTCAGGACATAGCCCGG-TTAGAGTAACTCGAA
1 CAAATACCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* * *
34047593 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATACCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* * *
34047633 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTCACTAGCG
1 CAAATACCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
34047672 CAGATACCTTCGAGACTTAGCCC
1 CAAATACCTTCGGGACTTAGCCC
34047695 AGTTATCATC
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
39 30 0.34
40 57 0.64
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATACCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:34061209 original size:30 final size:30
Alignment explanation
Indices: 34061173--34061234 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
34061163 GTCCTTAACT
*
34061173 TAAACTTTTTCAAAATTACAATTTTGCCCC
1 TAAACTTTTGCAAAATTACAATTTTGCCCC
* * * *
34061203 TAAACTTTTGCATATTTACACTTTTTCCCC
1 TAAACTTTTGCAAAATTACAATTTTGCCCC
34061233 TA
1 TA
34061235 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (30 bp):
TAAACTTTTGCAAAATTACAATTTTGCCCC
Found at i:34062510 original size:27 final size:27
Alignment explanation
Indices: 34062480--34062535 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
34062470 TTGTTTCTCC
* **
34062480 GCCACATATACTATTACTGGTGGCTTT
1 GCCACAGATACTATTACTGGCAGCTTT
* *
34062507 GCCATAGGTACTATTACTGGCAGCTTT
1 GCCACAGATACTATTACTGGCAGCTTT
34062534 GC
1 GC
34062536 TGAGGTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (27 bp):
GCCACAGATACTATTACTGGCAGCTTT
Found at i:34072419 original size:20 final size:20
Alignment explanation
Indices: 34072394--34072435 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
34072384 GAATAAGTTT
34072394 AATTTGAATTTTTTTAGATC
1 AATTTGAATTTTTTTAGATC
34072414 AATTTGAATTTTTTTAGATC
1 AATTTGAATTTTTTTAGATC
34072434 AA
1 AA
34072436 GAACCAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (20 bp):
AATTTGAATTTTTTTAGATC
Found at i:34072779 original size:45 final size:44
Alignment explanation
Indices: 34072730--34072862 Score: 112
Period size: 45 Copynumber: 3.0 Consensus size: 44
34072720 AGGATTTTCG
34072730 ATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTT-TCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * * * * * *
34072775 ATATGTGGTTACGAGTACGACCATGTTTGGGACATCGACATCG-G
1 ATATGT-GTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * *
34072819 AT-T-TGATTCGTGTAAGACC-CTATCTGGGACAGTGGCATCGAT
1 ATATGTGTTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
34072861 AT
1 AT
34072863 GAGATAGCAT
Statistics
Matches: 66, Mismatches: 19, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
41 25 0.38
42 3 0.05
43 1 0.02
44 2 0.03
45 32 0.48
46 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (44 bp):
ATATGTGTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:34075264 original size:43 final size:43
Alignment explanation
Indices: 34075197--34075404 Score: 264
Period size: 43 Copynumber: 4.9 Consensus size: 43
34075187 ATAGCTCGTA
* * *
34075197 CAATGCC-ATATCCCAGATATGGTCTTACATGTCATTACAT-AT-
1 CAATGCCAATGTCCCAGACATGGTCTTACATGT-AAT-CATAATG
* * * ** *
34075239 CGATGCCAATATCCCAGACAGGGTCTTACACATAAACGATTAATG
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC-A-TAATG
34075284 --ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATG
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATG
34075325 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATG
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATG
34075368 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
34075405 TCATCTCAGT
Statistics
Matches: 147, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
41 6 0.04
42 9 0.06
43 130 0.88
44 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATG
Found at i:34077779 original size:39 final size:39
Alignment explanation
Indices: 34077729--34077856 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
34077719 TATATGAGAT
34077729 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
34077768 TGGAAACATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* * **
34077807 CGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
34077846 TGGAAAAATAT
1 TGGAAATATAT
34077857 TCGGGTTAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:34077874 original size:78 final size:78
Alignment explanation
Indices: 34077730--34077878 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 78
34077720 ATATGAGATT
* * * **
34077730 GGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAACATATCCGGACATGAGGTCCG
1 GGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCG
34077795 CAGGCTATATGCC
66 CAGGCTATATGCC
* * * **
34077808 GGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATTCGG-GTTAAAGACCC
1 GGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCC
34077872 GCAGGCT
65 GCAGGCT
34077879 TACGCTAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 1 0.02
78 59 0.98
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (78 bp):
GGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCG
CAGGCTATATGCC
Found at i:34079439 original size:85 final size:85
Alignment explanation
Indices: 34079296--34079474 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
34079286 GGCCGGCCAT
34079296 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
34079361 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
34079381 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
34079446 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
34079466 GGGCATGGG
1 GAGCATGGG
34079475 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:34081668 original size:47 final size:47
Alignment explanation
Indices: 34081614--34082057 Score: 771
Period size: 47 Copynumber: 9.4 Consensus size: 47
34081604 TATTTGAATA
34081614 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34081661 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
34081708 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34081755 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
34081802 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
34081851 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34081898 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34081947 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
34081994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
34082041 AATGTGAAAGGGTATAT
1 AATGTGAAAGTGTATAT
34082058 GTGACAGCCC
Statistics
Matches: 378, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 286 0.76
49 92 0.24
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:34081848 original size:96 final size:94
Alignment explanation
Indices: 34081614--34082057 Score: 789
Period size: 96 Copynumber: 4.7 Consensus size: 94
34081604 TATTTGAATA
34081614 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
34081679 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
* *
34081708 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATAAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
34081773 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
34081802 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
34081867 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
*
34081898 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
34081963 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
*
34081994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34082058 GTGACAGCCC
Statistics
Matches: 335, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 154 0.46
96 181 0.54
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:34081894 original size:143 final size:141
Alignment explanation
Indices: 34081611--34082057 Score: 777
Period size: 143 Copynumber: 3.1 Consensus size: 141
34081601 GTATATTTGA
34081611 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
34081676 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
34081741 TGACCGATGTG
131 TGGCCGATGTG
*
34081752 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
* *
34081817 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
64 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
34081882 AATGGCCAATGTG
129 AATGGCCGATGTG
* *
34081895 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATAAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
34081960 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
64 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
34082025 AATGGCCGATGTG
129 AATGGCCGATGTG
* *
34082038 ATGAATGTGAAAGGGTATAT
1 ATAAATGTGAAAGTGTATAT
34082058 GTGACAGCCC
Statistics
Matches: 290, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
141 66 0.23
143 179 0.62
145 45 0.16
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (141 bp):
ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTG
Found at i:34083725 original size:80 final size:79
Alignment explanation
Indices: 34083641--34083812 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
34083631 GGACTAAGAT
*
34083641 CCGAAGGCATTTGTGCAAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCAAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
34083705 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
34083721 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
34083786 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
34083800 CCGAAGGCATTTG
1 CCGAAGGCATTTG
34083813 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:34083792 original size:39 final size:39
Alignment explanation
Indices: 34083588--34083810 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
34083578 TTGAATGCTG
* * * * * *
34083588 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
34083628 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
34083667 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
34083708 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
34083748 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
34083787 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
34083811 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 40 0.26
40 105 0.67
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:34083830 original size:79 final size:80
Alignment explanation
Indices: 34083668--34083835 Score: 180
Period size: 79 Copynumber: 2.1 Consensus size: 80
34083658 AGATACAAAT
* * *
34083668 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
34083733 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * * *
34083748 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
34083812 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
34083827 TCC-GGTTAA
1 TCCGGGTTAA
34083836 ATCCCAAAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
78 6 0.08
79 48 0.67
80 18 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:34090092 original size:39 final size:40
Alignment explanation
Indices: 34090047--34090218 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
34090037 GCTCCTCGTT
* * *
34090047 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
34090087 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
34090126 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
34090166 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
34090206 CAAATGCCTTCGG
1 CAAATGCCTTCGG
34090219 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:34090147 original size:40 final size:39
Alignment explanation
Indices: 34090049--34090271 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
34090039 TCCTCGTTCA
* * * *
34090049 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
34090088 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
34090127 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
34090167 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
34090207 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
34090248 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34090272 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:34090231 original size:80 final size:79
Alignment explanation
Indices: 34090047--34090271 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
34090037 GCTCCTCGTT
* * * * *
34090047 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
34090111 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
34090126 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
34090191 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
34090206 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
34090270 GA
63 GA
34090272 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:34090280 original size:41 final size:41
Alignment explanation
Indices: 34090203--34090280 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34090193 TTTGTATCTC
* * *
34090203 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34090244 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34090281 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34094104 original size:80 final size:79
Alignment explanation
Indices: 34094020--34094191 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
34094010 GGACTAAGAT
*
34094020 CCGAAGGCATTTGTGCAAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCAAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
34094084 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
34094100 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
34094165 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
34094179 CCGAAGGCATTTG
1 CCGAAGGCATTTG
34094192 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:34094171 original size:39 final size:39
Alignment explanation
Indices: 34093967--34094189 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
34093957 TTGAATGCTG
* * * * * *
34093967 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
34094007 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
34094046 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
34094087 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
34094127 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
34094166 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
34094190 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 40 0.26
40 105 0.67
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:34094209 original size:79 final size:80
Alignment explanation
Indices: 34094047--34094224 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
34094037 AGATACAAAT
* * * *
34094047 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
34094112 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
34094127 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
34094191 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
34094206 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
34094225 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:34097377 original size:40 final size:40
Alignment explanation
Indices: 34097094--34097365 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
34097084 GAGAATTGAG
34097094 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
34097134 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
34097174 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
34097214 AGTGATATATCCGGGATAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
34097254 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** **
34097294 AGTGATATATCCATGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
34097334 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
34097366 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:34097646 original size:58 final size:57
Alignment explanation
Indices: 34097577--34097685 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
34097567 CGAATGATTA
* *
34097577 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
* * *
34097635 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCG
34097686 ATCAGTGGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 26 0.57
58 20 0.43
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:34101415 original size:47 final size:47
Alignment explanation
Indices: 34101361--34101452 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 47
34101351 TGAATAAATA
*
34101361 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
*
34101408 TGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAA
1 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
34101453 GGCCTAATAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
Found at i:34101457 original size:23 final size:23
Alignment explanation
Indices: 34101421--34101475 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
34101411 AAGTGTATAT
*
34101421 ATGTGAT-AAGGCCTAATAGCTG
1 ATGTGATGAAGGCCTAATAGCCG
34101443 ATGTGATGAAGGCCTAATAGCCG
1 ATGTGATGAAGGCCTAATAGCCG
34101466 ATGTGATGAA
1 ATGTGATGAA
34101476 TGTGAAAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 7 0.23
23 24 0.77
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (23 bp):
ATGTGATGAAGGCCTAATAGCCG
Found at i:34101457 original size:70 final size:70
Alignment explanation
Indices: 34101374--34101522 Score: 264
Period size: 70 Copynumber: 2.1 Consensus size: 70
34101364 AAGTGTATAT
*
34101374 ATGTGAT-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 ATGTGATGAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
34101438 AGCTG
66 AGCCG
34101443 ATGTGATGAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 ATGTGATGAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
34101508 GGCCG
66 AGCCG
34101513 ATGTGATGAA
1 ATGTGATGAA
34101523 TGTGAAAGTG
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
69 7 0.09
70 69 0.91
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (70 bp):
ATGTGATGAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
AGCCG
Found at i:34101504 original size:47 final size:47
Alignment explanation
Indices: 34101443--34101880 Score: 714
Period size: 47 Copynumber: 9.2 Consensus size: 47
34101433 CTAATAGCTG
*
34101443 ATGTGATGAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34101491 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
34101540 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
34101587 ATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
34101636 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
34101683 ATGTGATAAGGCTTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34101730 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34101777 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
34101824 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34101871 ATGTGATAAG
1 ATGTGATAAG
34101881 TCCCGAAGGG
Statistics
Matches: 367, Mismatches: 19, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
47 268 0.73
48 7 0.02
49 92 0.25
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:34101755 original size:94 final size:95
Alignment explanation
Indices: 34101443--34101880 Score: 718
Period size: 96 Copynumber: 4.6 Consensus size: 95
34101433 CTAATAGCTG
*
34101443 ATGTGATGAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 ATGTGAT-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
34101508 GGCCGATGTGATGAATGTGAAAGTGTATATAT
65 GGCCGATGTGATGAATGTGAAAGTG-ATATAT
*
34101540 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
34101605 GCCAATGTGATGAATGTGAAAGTGTATATAT
66 GCCGATGTGATGAATGTGAAAGTG-ATATAT
* *
34101636 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
34101701 GCCGATGTGATGAATGTGAAAGTG-TATAT
66 GCCGATGTGATGAATGTGAAAGTGATATAT
34101730 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
34101795 GCCGATGTGATGAATGTGAAAGTG-TATAT
66 GCCGATGTGATGAATGTGAAAGTGATATAT
* * * * * * * *
34101824 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
34101881 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
94 146 0.45
96 171 0.53
97 7 0.02
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGATATAT
Found at i:34108478 original size:2 final size:2
Alignment explanation
Indices: 34108427--34108461 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
34108417 GTTGATGAGC
* *
34108427 TA TA TA AA TA TA TA TA TA TA TA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34108462 TCGGCTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:34109683 original size:39 final size:39
Alignment explanation
Indices: 34109639--34109718 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
34109629 ATGAGATTGA
34109639 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
34109678 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
34109717 AA
1 AA
34109719 TATTGTAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (39 bp):
AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
Found at i:34111102 original size:27 final size:27
Alignment explanation
Indices: 34111072--34111249 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
34111062 TTATTGAGCC
* *
34111072 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
34111099 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
34111126 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
34111154 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
34111181 CGCACACTTAGTGC-ATCAT-ATCCATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* *
34111208 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
34111235 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34111250 GTACAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 26 0.21
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:34111238 original size:54 final size:53
Alignment explanation
Indices: 34111097--34111248 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 53
34111087 ATATAATCAA
* * *
34111097 CTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTG-CACATAGTCCAT
** *
34111152 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TCCAT
1 CTCGCACACTTAGTGCAACATAGTCAA-TCGCACACTTAGTGCA-CATAGTCCAT
*
34111206 TTCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTGC
34111249 TGTACAATTT
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
54 45 0.53
55 40 0.47
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (53 bp):
CTCGCACACTTAGTGCAACATAGTCAATCGCACACTTAGTGCACATAGTCCAT
Found at i:34119159 original size:27 final size:27
Alignment explanation
Indices: 34119129--34119305 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
34119119 ATATTGAGCC
* * * *
34119129 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
34119156 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
34119183 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
34119211 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
34119238 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
34119265 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
34119292 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
34119306 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:34119221 original size:55 final size:55
Alignment explanation
Indices: 34119129--34119305 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
34119119 ATATTGAGCC
* * * * *
34119129 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
34119183 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
34119238 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
34119292 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
34119306 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:34119268 original size:82 final size:81
Alignment explanation
Indices: 34119150--34119305 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
34119140 TGCTATACAA
* * * **
34119150 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
34119215 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34119232 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
34119296 CCCTTAGTGC
65 CACTTAGTGC
34119306 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34124063 original size:40 final size:40
Alignment explanation
Indices: 34123866--34124049 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
34123856 CGAATGATGT
* * * * *
34123866 CCGGGCTAAGCCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
34123906 CTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
34123946 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
34123985 CCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34124025 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34124050 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 32 0.27
40 81 0.68
41 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34124080 original size:79 final size:79
Alignment explanation
Indices: 34123917--34124082 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
34123907 TGGACTAAGA
* **
34123917 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
**
34123982 AAACCGGGTTAGGT
66 AAACCGGGTTAAAT
* * * *
34123996 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* *
34124059 CTATATCC-GGTTAAAT
63 CTAAAACCGGGTTAAAT
34124075 TCCGAAGG
1 TCCGAAGG
34124083 TACGTGATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
AAACCGGGTTAAAT
Found at i:34130465 original size:17 final size:19
Alignment explanation
Indices: 34130423--34130466 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
34130413 ATGAAATTTT
*
34130423 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
34130442 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
34130460 AA-TATTA
1 AATTATTA
34130467 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:34130579 original size:15 final size:15
Alignment explanation
Indices: 34130561--34130589 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34130551 ATATTTATAA
34130561 AATTATTATTATTAT
1 AATTATTATTATTAT
34130576 AATTATTATTATTA
1 AATTATTATTATTA
34130590 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:34134230 original size:37 final size:37
Alignment explanation
Indices: 34134167--34134273 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
34134157 AGCTCAGACG
* * * *
34134167 AAATCTCCACATGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
34134204 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34134241 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
34134274 AAATATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:34134546 original size:47 final size:47
Alignment explanation
Indices: 34134484--34135411 Score: 1217
Period size: 47 Copynumber: 19.1 Consensus size: 47
34134474 ACACGTTTCG
* * * **
34134484 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
34134531 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
34134578 CATTGGCCATTCGGCCTTATCACACACACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
34134625 CATTGGCCATTCCGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
34134672 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
34134725 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
34134772 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
34134819 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
34134870 CATTAGCCATTCGGCCTTATCACACATACGAATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
34134917 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
34134968 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** *
34135015 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCA
*
34135066 CATTGGCCATTCGGTCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
34135113 CATTGGCCATTCAGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
34135164 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** **
34135211 CATTGGCCATTCGGCCTTATCACACATTTATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCA
34135262 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
34135309 CATTGGCCATTCGGCCTTATCACACATATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC--ATACGCAT----GTTCACATTCATCA
*
34135362 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
34135409 CAT
1 CAT
34135412 AAAATCCTAA
Statistics
Matches: 783, Mismatches: 66, Indels: 64
0.86 0.07 0.07
Matches are distributed among these distances:
47 474 0.61
49 6 0.01
51 222 0.28
53 81 0.10
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:34134624 original size:25 final size:25
Alignment explanation
Indices: 34134596--34134673 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
34134586 ATTCGGCCTT
34134596 ATCACACACACGCATGTTCACATTC
1 ATCACACACACGCATGTTCACATTC
**** * * *
34134621 ATCACATTGGC-CAT-TCCGCCTT-
1 ATCACACACACGCATGTTCACATTC
*
34134643 ATCACACATACGCATGTTCACATTC
1 ATCACACACACGCATGTTCACATTC
34134668 ATCACA
1 ATCACA
34134674 TTGGCCATTC
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.29, C:0.35, G:0.09, T:0.27
Consensus pattern (25 bp):
ATCACACACACGCATGTTCACATTC
Found at i:34134899 original size:98 final size:98
Alignment explanation
Indices: 34134484--34135411 Score: 1439
Period size: 98 Copynumber: 9.5 Consensus size: 98
34134474 ACACGTTTCG
* * * **
34134484 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * **
34134549 AT--CTC--ATATATGCATGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
* *
34134578 CATTGGCCATTCGGCCTTATCACACACACGCATGTTCACATTCATCACATTGGCCATTCCGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
***
34134643 ATCACACATACGCAT----GTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
* ** *
34134672 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCACATTGGCCATTC
*** *
34134737 GGCCTTATCACACATACGCAT----GTTCATATTCATCA
60 GGCCTTATCACACATATATATACGGGTTCACATTCATCA
34134772 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34134837 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
* *
34134870 CATTAGCCATTCGGCCTTATCACACATACGAATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34134935 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34134968 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
34135033 ATCACACATATATATACAGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
* *
34135066 CATTGGCCATTCGGTCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34135131 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34135164 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
34135229 ATCACACATTTATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34135262 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34135327 ATCACACATATATATATACGGGTTCACATTCATCA
66 ATCACAC--ATATATATACGGGTTCACATTCATCA
*
34135362 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
34135412 AAAATCCTAA
Statistics
Matches: 779, Mismatches: 39, Indels: 26
0.92 0.05 0.03
Matches are distributed among these distances:
94 146 0.19
96 3 0.00
98 470 0.60
100 160 0.21
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACGGGTTCACATTCATCA
Found at i:34135238 original size:24 final size:24
Alignment explanation
Indices: 34135162--34135238 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
34135152 TCACATTCAT
34135162 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
** * *
34135186 CACATACG-CATGTTC--ACAT-TCA
1 CACATTGGCCA--TTCGGCCTTATCA
34135208 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
34135233 CACATT
1 CACATT
34135239 TATATACGGG
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 6 0.16
23 10 0.26
24 16 0.42
25 6 0.16
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:34137714 original size:85 final size:85
Alignment explanation
Indices: 34137585--34137763 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
34137575 TATTTTATTG
*
34137585 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
34137650 TAGCCATAACAGCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
34137670 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
34137735 TAGCCATAACATCTTGTCCA
66 TAGCCATAACAGCTTGTCCA
34137755 CCCATGCTC
1 CCCATGCTC
34137764 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACAGCTTGTCCA
Found at i:34139277 original size:57 final size:58
Alignment explanation
Indices: 34139208--34139318 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
34139198 GTGCCCACTG
* *
34139208 ATCGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATT
1 ATCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
* * *
34139265 ATCGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 ATCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
34139319 TAATCATTCG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 26 0.54
58 22 0.46
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (58 bp):
ATCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
Found at i:34139562 original size:40 final size:40
Alignment explanation
Indices: 34139530--34140000 Score: 757
Period size: 40 Copynumber: 11.8 Consensus size: 40
34139520 CCAGCATGAT
* * *
34139530 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
34139570 TGCTCTTCGAGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATATATCACTAGCACGAA
* *
34139610 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34139650 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34139690 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34139730 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34139770 TGCTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
34139809 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAC
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* **
34139849 TGCTCCTCGGGACTTAGCCTAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
34139889 TGCTCTTCGGAACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
34139929 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
34139969 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
34140001 CTCAATTCTC
Statistics
Matches: 399, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
39 40 0.10
40 357 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:34141329 original size:37 final size:37
Alignment explanation
Indices: 34141268--34141376 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
34141258 AGCTCAGACG
* * * *
34141268 AAATCTCCACATGAAGTTAACGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
34141305 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34141342 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
34141377 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:34141649 original size:47 final size:47
Alignment explanation
Indices: 34141587--34142422 Score: 988
Period size: 47 Copynumber: 17.1 Consensus size: 47
34141577 ACACGTTTCG
* * *
34141587 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34141634 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34141681 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34141728 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34141775 CATTGGCCATTCGGCCTTATCACGCATATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C------ATATATGCATGTTCACATTCATCA
** *
34141830 CATTGGCCATTCGGCCTTATCACGCATATATATAAATAGGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATGCAT--GTTCACATTCATCA
* **
34141883 CATTGGCCATTCGGCCTTATCACGCATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATGCATGTTCACATTCATCA
* *
34141934 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
34141981 CATTGGCCATTCGGCCTTATCACAAATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
34142028 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* *
34142079 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
34142126 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* *
34142177 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
34142224 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* *
34142275 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
34142322 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* * *
34142373 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
34142420 CAT
1 CAT
34142423 AAAATCCTAA
Statistics
Matches: 696, Mismatches: 67, Indels: 52
0.85 0.08 0.06
Matches are distributed among these distances:
47 377 0.54
49 26 0.04
51 201 0.29
53 47 0.07
55 45 0.06
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:34142069 original size:98 final size:98
Alignment explanation
Indices: 34141587--34142422 Score: 1192
Period size: 98 Copynumber: 8.5 Consensus size: 98
34141577 ACACGTTTCG
* * * **
34141587 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * ** *
34141652 AT--CTC--ATATATGCATGTTCACATTTATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34141681 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
***
34141746 ATCACACATACGCAT----GTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
* ** *
34141775 CATTGGCCATTCGGCCTTATCACGCATATATATATATACAGGTTCACATTCATCACATTGGCCAT
1 CATTGGCCATTCGGCCTTATCA--C------ACATACGCATGTTCACATTCATCACATTGGCCAT
* ** *
34141840 TCGGCCTTATCACGCATATATATAAATAGGTTCACATTTATCA
58 TCGGCCTTATCACACATATATAT--ACGGGTTCACATTCATCA
* ***
34141883 CATTGGCCATTCGGCCTTATCACGCATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCCATTCGG
***
34141948 CCTTATCACACATACGCAT----GTTCACATTCATCA
62 CCTTATCACACATATATATACGGGTTCACATTCATCA
*
34141981 CATTGGCCATTCGGCCTTATCACAAATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34142046 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34142079 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34142144 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34142177 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34142242 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
34142275 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
34142340 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACGGGTTCACATTCATCA
*
34142373 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
34142423 AAAATCCTAA
Statistics
Matches: 678, Mismatches: 38, Indels: 48
0.89 0.05 0.06
Matches are distributed among these distances:
94 141 0.21
96 3 0.00
98 400 0.59
100 6 0.01
102 49 0.07
104 43 0.06
106 1 0.00
108 35 0.05
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACGGGTTCACATTCATCA
Found at i:34142454 original size:145 final size:142
Alignment explanation
Indices: 34141869--34142423 Score: 667
Period size: 145 Copynumber: 3.8 Consensus size: 142
34141859 ATATAAATAG
* *
34141869 GTTCACATTTATCACATTGGCCATTCGGCCTTATCACGCATATATATACGGGTTCACATTCATCA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
* * **
34141934 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC-ATTCGGCCT
66 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATAGGCCTAATC-AAC-
*
34141998 TATCACAAATACGCAT
129 -AT-ATAAATACGCAT
34142014 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
*
34142079 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
66 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA-T----A---GGCCTA
* *
34142144 ATCACACATATATATACG--G
123 ATCA-ACATATAAATACGCAT
***
34142163 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
*** * *
34142224 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCC-ATTCG
66 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATAGGCCTAATC-
** *
34142288 GCCTTATCACACATACGCAT
126 AACATAT-A-A-ATACGCAT
34142308 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
*
34142373 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATA
66 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATA
34142424 AAATCCTAAA
Statistics
Matches: 354, Mismatches: 32, Indels: 48
0.82 0.07 0.11
Matches are distributed among these distances:
140 6 0.02
141 5 0.01
143 5 0.01
145 216 0.61
146 1 0.00
148 1 0.00
149 104 0.29
151 7 0.02
152 2 0.01
153 4 0.01
154 3 0.01
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.31
Consensus pattern (142 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATAGGCCTAATCAACAT
ATAAATACGCAT
Found at i:34144741 original size:85 final size:85
Alignment explanation
Indices: 34144612--34144790 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
34144602 TATTTTATTG
*
34144612 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
34144677 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
34144697 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
34144762 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
34144782 CCCATGCTC
1 CCCATGCTC
34144791 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:34145835 original size:16 final size:17
Alignment explanation
Indices: 34145803--34145835 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34145793 CATCAATAAG
34145803 GGTTTTCGATGAAAACAT
1 GGTTTTCGA-GAAAACAT
34145821 GGTTTTCGA-AAAACA
1 GGTTTTCGAGAAAACA
34145836 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (17 bp):
GGTTTTCGAGAAAACAT
Found at i:34146615 original size:51 final size:51
Alignment explanation
Indices: 34146539--34146640 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
34146529 CACCTATTGC
*
34146539 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGTAGAATTTCCTTACAT
1 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
34146590 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
1 TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
34146641 CATTACTATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (51 bp):
TTAGTCCTTAATGTTTTACAATGTTTTCCAATTAGCAGAATTTCCTTACAT
Found at i:34146929 original size:5 final size:5
Alignment explanation
Indices: 34146919--34146945 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
34146909 GTCTGATGTA
34146919 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
34146946 TTAGTACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:34148238 original size:23 final size:21
Alignment explanation
Indices: 34148196--34148238 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
34148186 ATCGAGAACT
* *
34148196 TTAGAAATTTTTTTACAACAC
1 TTAGAAATTTTTCTAAAACAC
34148217 TTAGAAAATTTTTGCTAAAACA
1 TTAG-AAATTTTT-CTAAAACA
34148239 GTGGTAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.40
Consensus pattern (21 bp):
TTAGAAATTTTTCTAAAACAC
Found at i:34149215 original size:10 final size:10
Alignment explanation
Indices: 34149200--34149228 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
34149190 GTGTGATAGG
34149200 ATCTCCGGTA
1 ATCTCCGGTA
34149210 ATCTCCGGTA
1 ATCTCCGGTA
34149220 ATCTCCGGT
1 ATCTCCGGT
34149229 TGATAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (10 bp):
ATCTCCGGTA
Found at i:34149972 original size:42 final size:42
Alignment explanation
Indices: 34149809--34149972 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
34149799 TACTGTACCA
* ** *
34149809 ATGCCATGTCCCAGATATGGTCTTACATATAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * * * * *
34149851 ATGCCAATAGCCCAGCTATAGCCTTACCCGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * * * *
34149894 ATGTCATATCCAAGATATGGTCTTATACG-AAGTCTCACATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
34149936 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
34149973 GTAACCCTAA
Statistics
Matches: 95, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 2 0.02
42 60 0.63
43 33 0.35
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:34153767 original size:46 final size:45
Alignment explanation
Indices: 34153668--34153778 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 45
34153658 TGATATGTGT
* *
34153668 GCTAGTGTAAGACATGTCTGGTACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACATTACGAGA
*
34153714 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-ACATTGAAACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATT---ACGAGA
*
34153760 TCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCT
34153779 AGGAGCATCA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
43 5 0.09
45 1 0.02
46 51 0.89
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATTACGAGA
Found at i:34153913 original size:49 final size:48
Alignment explanation
Indices: 34153851--34154121 Score: 271
Period size: 49 Copynumber: 5.6 Consensus size: 48
34153841 TGTTGTGTGT
* *
34153851 CAGTTTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAAAGC
* * * *
34153900 CAGTGTAAGACCTGTCTGGGGCATGACATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCT-GATAGATGAAAGC
* * *
34153949 CAGTGTAAGACCTGTCTGGGACATGGTATCGAGACC-GATAGGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATC--GACCTGATAGATGAAAGC
* * * * * *
34153998 TAGTGTAAGACCTATCTAGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAGATGAAAGC
* * **
34154047 CAGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGAT--ATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAAAGC
34154094 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
34154122 GTCGGCATCT
Statistics
Matches: 183, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
47 20 0.11
48 17 0.09
49 142 0.78
50 1 0.01
51 2 0.01
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAAAGC
Found at i:34153958 original size:142 final size:135
Alignment explanation
Indices: 34153716--34153974 Score: 322
Period size: 142 Copynumber: 1.9 Consensus size: 135
34153706 TTATGAGAGC
* * *
34153716 CAGTGTAAGACATGTCTGGGACATGCATCGACATTGAAACGAGATCTAGTGTAAGACATGTCTAG
1 CAGTGTAAGACATGTCTGGGACATGCATCGACACTGAAACGAGAGCCAGTGTAAGACATGTCTAG
*
34153781 GAGCATCAGCCTCGAGATATGCAAGCTAGTATAAGACCTGTATAGGACATGGCGTCAGCTTGTTG
66 GAGCATCAGCCTCGAGATATGAAAGCTAGTATAAGACCTGTATAGGACATGGCGTCAGCTTGTTG
34153846 TGTGT
131 TGTGT
* * * *
34153851 CAGTTTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTGTC
1 CAGTGTAAGACATGTCTGGGACAT-GCATCGACACTGA-A-ACGAGAGCCAGTGTAAGACATGTC
* * * * *
34153916 TGGGGCATGACATCAGCCTCGATATATGAAAG-TCAGTGTAAGACCTGTCTGGGACATGG
63 T-AGG-A-G-CATCAGCCTCGAGATATGAAAGCT-AGTATAAGACCTGTATAGGACATGG
34153975 TATCGAGACC
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
135 22 0.21
136 12 0.12
137 1 0.01
138 21 0.20
139 2 0.02
140 1 0.01
141 2 0.02
142 42 0.41
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (135 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGACACTGAAACGAGAGCCAGTGTAAGACATGTCTAG
GAGCATCAGCCTCGAGATATGAAAGCTAGTATAAGACCTGTATAGGACATGGCGTCAGCTTGTTG
TGTGT
Found at i:34153962 original size:98 final size:98
Alignment explanation
Indices: 34153849--34154119 Score: 375
Period size: 98 Copynumber: 2.8 Consensus size: 98
34153839 CTTGTTGTGT
*
34153849 GTCAGTTTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
*
34153914 TCTGGGGCATGACATCAGCCTCGATATATGAAA
66 TCTGGGACATGACATCAGCCTCGATATATGAAA
* * * * * *
34153947 GTCAGTGTAAGACCTGTCTGGGACATGGTATCGAGACCGATAGGTGAGAGCTAGTGTAAGACCTA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
* * *
34154012 TCTAGGACATGGCATCGGCCTCGATATATGAAA
66 TCTGGGACATGACATCAGCCTCGATATATGAAA
* ** **
34154045 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGAT--ATGCTAGCCAGTGTAAGACCAT
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACC-T
34154108 GTCTGGGACATG
65 GTCTGGGACATG
34154120 GCGTCGGCAT
Statistics
Matches: 149, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
96 16 0.11
97 11 0.07
98 122 0.82
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (98 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTG
TCTGGGACATGACATCAGCCTCGATATATGAAA
Found at i:34154060 original size:147 final size:146
Alignment explanation
Indices: 34153856--34154120 Score: 347
Period size: 147 Copynumber: 1.8 Consensus size: 146
34153846 TGTGTCAGTT
* * * * *
34153856 TAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTGTCTGGGG
1 TAAGACCTATCTAGGACATGGCATCGACACTGATAGATGAAAGCCAGTGTAAGACCTGTCTAGGA
* *
34153921 CATGACATCAGCCTCGAT-ATATGAAAGTCAGTGTAAGACC-TGTCTGGGACATGGTATCGAGAC
66 CATGACATC-GACT--ATGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGAGAC
34153984 CGATAGGTGAGAGCTAGTG
128 CGATAGGTGAGAGCTAGTG
* * *
34154003 TAAGACCTATCTAGGACATGGCATCGGC-CTCGATATATGAAAGTCAGTGTAAGACCTGTCTAGG
1 TAAGACCTATCTAGGACATGGCATCGACACT-GATAGATGAAAGCCAGTGTAAGACCTGTCTAGG
* * **
34154067 ACATGGCATCGACTTTGATATGCTAGCCAGTGTAAGACCATGTCTGGGACATGG
65 ACATGACATCGACTATGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGG
34154121 CGTCGGCATC
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
144 1 0.01
145 19 0.19
146 19 0.19
147 62 0.61
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (146 bp):
TAAGACCTATCTAGGACATGGCATCGACACTGATAGATGAAAGCCAGTGTAAGACCTGTCTAGGA
CATGACATCGACTATGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGAGACCGA
TAGGTGAGAGCTAGTG
Found at i:34171823 original size:49 final size:49
Alignment explanation
Indices: 34171770--34171867 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
34171760 TAAATATTAT
*
34171770 AAAAAAATAATTTTGTTACATACTTTATATGGTTAAATTCCTTAATGAG
1 AAAAAAATAATTTTGTTACATACTTTATACGGTTAAATTCCTTAATGAG
34171819 AAAAAAATAATTTTGTTACATACTTTATACGGTTAAATTCCTTAATGAG
1 AAAAAAATAATTTTGTTACATACTTTATACGGTTAAATTCCTTAATGAG
34171868 TCTATTTTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (49 bp):
AAAAAAATAATTTTGTTACATACTTTATACGGTTAAATTCCTTAATGAG
Found at i:34173292 original size:46 final size:46
Alignment explanation
Indices: 34173234--34173554 Score: 430
Period size: 46 Copynumber: 7.0 Consensus size: 46
34173224 AGTGTGCTCT
34173234 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
34173280 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
34173326 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
34173372 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
34173418 GTGACATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
34173464 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
34173511 ATGACA-GAAAATGAGTAGGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
34173555 TCATGTCGAA
Statistics
Matches: 249, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 209 0.84
47 39 0.16
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:34177106 original size:46 final size:46
Alignment explanation
Indices: 34177056--34177228 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
34177046 TGGTTGAGCA
34177056 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
34177102 TCCGAACTCATTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
34177147 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34177195 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34177229 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.57
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34177212 original size:93 final size:93
Alignment explanation
Indices: 34177053--34177223 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
34177043 GGATGGTTGA
* * *
34177053 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
34177118 TGAG-TCTGAGTTCGTGAAATGTAACTAG
66 TGAGTTC-GAGTTCGTGAAATGTAACTAG
* *
34177146 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
34177211 TGAGTTCGAGTTC
66 TGAGTTCGAGTTC
34177224 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTTCGAGTTCGTGAAATGTAACTAG
Found at i:34193705 original size:34 final size:34
Alignment explanation
Indices: 34193662--34193728 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
34193652 CTGTACTGAT
* *
34193662 ACTGATACTGTTACT-AAATTGGGCTAAGGCCCAC
1 ACTGATACTGGTACTGAAA-TGGCCTAAGGCCCAC
*
34193696 ACTGATACTGGTACTGTAATGGCCTAAGGCCCA
1 ACTGATACTGGTACTGAAATGGCCTAAGGCCCA
34193729 ACTAAAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (34 bp):
ACTGATACTGGTACTGAAATGGCCTAAGGCCCAC
Found at i:34197670 original size:25 final size:25
Alignment explanation
Indices: 34197642--34197689 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
34197632 CTATAATGTG
*
34197642 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATGCCCCTAGGTA
*
34197667 AAAATGGCCATTATGCCCCTAGG
1 AAAATGACCATTATGCCCCTAGG
34197690 GATATGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATGCCCCTAGGTA
Found at i:34197742 original size:10 final size:10
Alignment explanation
Indices: 34197729--34197767 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
34197719 CTATTTTATA
34197729 CATGATATGC
1 CATGATATGC
34197739 CATGATATGC
1 CATGATATGC
*
34197749 ACATGATATGT
1 -CATGATATGC
34197760 CATGATAT
1 CATGATAT
34197768 ATTCATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (10 bp):
CATGATATGC
Found at i:34197752 original size:21 final size:21
Alignment explanation
Indices: 34197728--34197767 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
34197718 ACTATTTTAT
34197728 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
*
34197749 ACATGATATGTCATGATAT
1 ACATGATATGCCATGATAT
34197768 ATTCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:34197847 original size:25 final size:24
Alignment explanation
Indices: 34197812--34197878 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
34197802 GAAGGAAGTG
*
34197812 CAAAAGGGCTTTGCCCTAATTTAT
1 CAAAAGGGCTTTGCCCCAATTTAT
* *
34197836 CGAAAAGGGCTTTACCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAATTTAT
34197861 CAAAAGGGCTTTGCCCCA
1 CAAAAGGGCTTTGCCCCA
34197879 GTTATTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 17 0.45
25 21 0.55
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAATTTAT
Found at i:34197870 original size:24 final size:24
Alignment explanation
Indices: 34197812--34197894 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
34197802 GAAGGAAGTG
* *
34197812 CAAAAGGGCTTTGCCCTAATTTAT
1 CAAAAGGGCTTTGCCCCAGTTTAT
*
34197836 CGAAAAGGGCTTTACCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
34197861 CAAAAGGGCTTTGCCCCAG-TTAT
1 CAAAAGGGCTTTGCCCCAGTTTAT
*
34197884 TAAAAGAGGCT
1 CAAAAG-GGCT
34197895 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 9 0.17
24 22 0.42
25 21 0.40
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:34202936 original size:28 final size:28
Alignment explanation
Indices: 34202879--34202942 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
34202869 TAGGAAGTAG
* * *
34202879 TTGGGCCTGATGAGCCATATGAATGTGA
1 TTGGGCCTGATGAGCCATATAAACGAGA
* *
34202907 TTGGGCCTGATGGGCCATGTAAACGAGA
1 TTGGGCCTGATGAGCCATATAAACGAGA
*
34202935 TTAGGCCT
1 TTGGGCCT
34202943 AAAGGGGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGAGCCATATAAACGAGA
Found at i:34203340 original size:27 final size:27
Alignment explanation
Indices: 34203283--34203609 Score: 200
Period size: 27 Copynumber: 12.1 Consensus size: 27
34203273 ACCGATTTTT
* * * *
34203283 GAAACACCCTCGATTTTTAAATTTACC
1 GAAACACCTTCGATTTGTAAAATTATC
* * *
34203310 GAAACACCTTTGATTTGTCAAATTATT
1 GAAACACCTTCGATTTGTAAAATTATC
* *
34203337 GAAACA-CTCTCAATTTGAAAAATTATC
1 GAAACACCT-TCGATTTGTAAAATTATC
* * * *
34203364 AAAATACCTTCAATTTATAAAATTATC
1 GAAACACCTTCGATTTGTAAAATTATC
* *
34203391 GAAATACCCTCGA-TTGTAAAATTA-C
1 GAAACACCTTCGATTTGTAAAATTATC
* * * * *
34203416 TAAAATACCCTCGATTTGAAAAATTACC
1 -GAAACACCTTCGATTTGTAAAATTATC
* * **
34203444 AAAATACCTTCGATTTGGGAAATTA-C
1 GAAACACCTTCGATTTGTAAAATTATC
* * *
34203470 TAAAACACCCTCGATTTGTAAAATTATT
1 -GAAACACCTTCGATTTGTAAAATTATC
*
34203498 GAAACACCATT-GATTTGTAATATTA-C
1 GAAACACC-TTCGATTTGTAAAATTATC
* * *
34203524 AGGAACACCCTCTATTTGTAAAATTATC
1 -GAAACACCTTCGATTTGTAAAATTATC
* * * ** *
34203552 GAAATACCTTTGACTTGTAAAACCACC
1 GAAACACCTTCGATTTGTAAAATTATC
* *
34203579 GAAACACC-CCATATTTGTAAAATTATC
1 GAAACACCTTC-GATTTGTAAAATTATC
34203606 GAAA
1 GAAA
34203610 TACCCTTATC
Statistics
Matches: 233, Mismatches: 55, Indels: 24
0.75 0.18 0.08
Matches are distributed among these distances:
25 1 0.00
26 26 0.11
27 201 0.86
28 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
GAAACACCTTCGATTTGTAAAATTATC
Found at i:34203660 original size:27 final size:27
Alignment explanation
Indices: 34203630--34203685 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
34203620 GTGAAAACTT
** *
34203630 ACCGAAATACCTTTGTAGTATAAAATG
1 ACCGAAATACCCCTGTAGGATAAAATG
* *
34203657 ACCGACATACCCCTGTAGGGTAAAATG
1 ACCGAAATACCCCTGTAGGATAAAATG
34203684 AC
1 AC
34203686 TGTTTTGCCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (27 bp):
ACCGAAATACCCCTGTAGGATAAAATG
Found at i:34206031 original size:289 final size:284
Alignment explanation
Indices: 34205517--34206062 Score: 905
Period size: 289 Copynumber: 1.9 Consensus size: 284
34205507 AGTGGTGAGC
* * *
34205517 GCTTGTTCATATAGTTGGAAATTTTGAGGACAAAATTTCTTTAAGGGGGTAGAAACACCTCGAAT
1 GCTTGTTCAGATAGTTGGAAATTTCGAGGACAAAATTTCTTTAAGGGGGTAGAAACACCTCAAAT
* ** *
34205582 TTGGGCCTAGAAGTATTGGGCCATTAGTTTGGGTCCGTAAGGGGGTTGTATAGAAGCATTTAATT
66 TTGGGCCTAGAAGCACCGAGCCATTAGTTTGGGTCCGTAAGGGGGTTGTATAGAAGCATTTAATT
*
34205647 GTACAAGGAAATGACACAATTAAATGTCTGCTTTAGTGGATAATGGCCCTAAGAAGTGTTGGAGA
131 GTACAAGGAAATGACACAATTAAATGTCTACTTTAGTGGATAATGGCCCTAAGAAGTGTTGGAGA
34205712 AATCTTGGGTTCAAACCTGGGTTTTAGCAAAAATTTTGG-AGGTAAGTGAATAAAACCCTGGGAG
196 AATCTTGGGTTCAAACCTGGGTTTTAGCAAAAATTTTGGTA-GTAAGTGAATAAAACCCTGGGAG
34205776 CATAGTGGTGTAGATTGAGCTAAGT
260 CATAGTGGTGTAGATTGAGCTAAGT
** *
34205801 GCTTGTTCAGATAGTTGGAAATTTCGAGGATGAAATTTCTTTAAGGGGGTAGAAATGAAACGCCT
1 GCTTGTTCAGATAGTTGGAAATTTCGAGGACAAAATTTCTTTAAGGGGGT----A-GAAACACCT
* *
34205866 CAAATTTGGGCCTAGAAGCACCGAGCCTTTAGTTTGGGTCCGTAAGGGGGTTGTATATAAGCATT
61 CAAATTTGGGCCTAGAAGCACCGAGCCATTAGTTTGGGTCCGTAAGGGGGTTGTATAGAAGCATT
34205931 TAATTGTACAAGGAAATGACACAATTAAATGTCTACTTTAGTGGATAATGGCCCTAAGAAGTGTT
126 TAATTGTACAAGGAAATGACACAATTAAATGTCTACTTTAGTGGATAATGGCCCTAAGAAGTGTT
*
34205996 GGAGAAATCTTGGGTTCAAACCTGGGTTTTAGCAAAAATTTTGGTAGTAAGTGAATAGAACCCTG
191 GGAGAAATCTTGGGTTCAAACCTGGGTTTTAGCAAAAATTTTGGTAGTAAGTGAATAAAACCCTG
34206061 GG
256 GG
34206063 TGCTTGGATG
Statistics
Matches: 242, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
284 46 0.19
288 1 0.00
289 194 0.80
290 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (284 bp):
GCTTGTTCAGATAGTTGGAAATTTCGAGGACAAAATTTCTTTAAGGGGGTAGAAACACCTCAAAT
TTGGGCCTAGAAGCACCGAGCCATTAGTTTGGGTCCGTAAGGGGGTTGTATAGAAGCATTTAATT
GTACAAGGAAATGACACAATTAAATGTCTACTTTAGTGGATAATGGCCCTAAGAAGTGTTGGAGA
AATCTTGGGTTCAAACCTGGGTTTTAGCAAAAATTTTGGTAGTAAGTGAATAAAACCCTGGGAGC
ATAGTGGTGTAGATTGAGCTAAGT
Found at i:34207232 original size:80 final size:80
Alignment explanation
Indices: 34207094--34207340 Score: 221
Period size: 80 Copynumber: 3.1 Consensus size: 80
34207084 TAATAAAGAG
* * * * * * *
34207094 AAATTATCGAAATACC-CCGATTTGTGAAATTAGCGAAAC-ACCGTCGATTTTTAGAATTACCAA
1 AAATTACCGAAATACCACCAATTTGTAAAATTACCAAAACAACC-TCGA-TTTGAAAATTACCAA
*
34207157 AACACCCTCGATTTGTA
64 AACACCCTCAATTTGTA
*** ** * *
34207174 AAATTACCGAAATACCATTGATTTGTAAAATTACTGAAATAACCTCGATTATG-AAATTACGAAA
1 AAATTACCGAAATACCACCAATTTGTAAAATTACCAAAACAACCTCGATT-TGAAAATTACCAAA
* *
34207238 ATACCCTTAATTTGTA
65 ACACCCTCAATTTGTA
* * * ****
34207254 AAATTATCGAAATACCCCCAATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTAATGGA
1 AAATTACCGAAATACCACCAATTTGTAAAATTACCAAAACAACCTCGATTTG-AAAATTACCAAA
34207319 ACACCCTCAATTTGTA
65 ACACCCTCAATTTGTA
34207335 AAATTA
1 AAATTA
34207341 TTGGAACACC
Statistics
Matches: 134, Mismatches: 28, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
79 2 0.01
80 80 0.60
81 49 0.37
82 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (80 bp):
AAATTACCGAAATACCACCAATTTGTAAAATTACCAAAACAACCTCGATTTGAAAATTACCAAAA
CACCCTCAATTTGTA
Found at i:34207459 original size:27 final size:27
Alignment explanation
Indices: 34207094--34207487 Score: 334
Period size: 27 Copynumber: 14.7 Consensus size: 27
34207084 TAATAAAGAG
*
34207094 AAATTATCGAAATACCC-CGATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
34207120 AAATTAGCGAAACACCGTCGATTTTTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
34207147 GAATTACCAAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
34207174 AAATTACCGAAATACCATTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
34207201 AAATTA-CTGAAATAACCTCGATTATG--
1 AAATTATC-GAAATACCCTCGATT-TGTA
**
34207227 AAATTA-CGAAAATACCCTTAATTTGTA
1 AAATTATCG-AAATACCCTCGATTTGTA
* *
34207254 AAATTATCGAAATACCCCCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
34207281 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
34207308 AAATTAAT-GGAACACCCTCAATTTGTA
1 AAATT-ATCGAAATACCCTCGATTTGTA
* * * *
34207335 AAATTATTGGAACACCCTCGATTTGAA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
34207362 AAATTATCGAAATACTCTCGATCTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
34207389 AAATTATCGAAATACCTTCGATTCGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * * *
34207416 AAATCACCGAAACACCCCCTATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
34207443 AAATTATCAAAATACCCTTGTAGTT-TA
1 AAATTATCGAAATACCCTCG-ATTTGTA
*
34207470 AAATTATCAAAATACCCT
1 AAATTATCGAAATACCCT
34207488 TGTAGTGTAA
Statistics
Matches: 299, Mismatches: 59, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
25 3 0.01
26 35 0.12
27 253 0.85
28 8 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:34207488 original size:27 final size:27
Alignment explanation
Indices: 34207439--34207500 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
34207429 ACCCCCTATT
34207439 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTATCAAAATACCCTTGTAG
*
34207466 TTTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTATCAAAATACCCTTGTAG
34207493 TGTAAAAT
1 TGTAAAAT
34207501 GACTGACATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCTTGTAG
Found at i:34207511 original size:27 final size:27
Alignment explanation
Indices: 34207452--34207532 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
34207442 AAAATTATCA
* * *
34207452 AAATACCCTTGTAGTTTAAAATTA-TCA
1 AAATACCCTTGTAGTGTAAAATGACT-G
34207479 AAATACCCTTGTAGTGTAAAATGACTG
1 AAATACCCTTGTAGTGTAAAATGACTG
* * *
34207506 ACATACCCCTGTAGGGTAAAATGACTG
1 AAATACCCTTGTAGTGTAAAATGACTG
34207533 TTTTGCCCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACTG
Found at i:34210360 original size:28 final size:28
Alignment explanation
Indices: 34210320--34210383 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
34210310 TTGGAAGTTG
* * *
34210320 TTGGGCCTGATGGGCCATTTGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAACGAGA
34210348 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATGTGAACGAGA
34210376 TTGGGCCT
1 TTGGGCCT
34210384 AAAGGGGCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.17, C:0.17, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATGTGAACGAGA
Found at i:34211129 original size:27 final size:27
Alignment explanation
Indices: 34210700--34211172 Score: 474
Period size: 27 Copynumber: 17.6 Consensus size: 27
34210690 TAATAAAGAG
* *
34210700 AAATTACCGAAATACCC-CTAATTTGTA
1 AAATTATCGAAATACCCTC-GATTTGTA
* *
34210727 AAATTA-CTGAAACACCCTCGATTTCTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
34210754 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
34210781 AAATTATCGAAATACCCACAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
34210808 AAATTATTGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
*
34210834 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
34210861 AAATTA-CTGAAATACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * * *
34210888 AAATTATCAAAACACCCTTGATTTGTC
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
34210915 AAATTATCGAAACACTCTCAATTTGAA
1 AAATTATCGAAATACCCTCGATTTGTA
*
34210942 AAATTATCGAAATACCCTCGATTTATA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
34210969 AAATTATCAAAATACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
34210996 AAATTATCGAAATACCCTCGATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
34211023 AAATTA-CTAAAACACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
34211050 AAATTATTGAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
34211077 ATATTA-CAGGAACACCCTCTATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * * *
34211104 AAATTATTGAAATACCTTTGACTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
** * * *
34211131 AAACCACCGAAACACCC-CATATTTGTA
1 AAATTATCGAAATACCCTC-GATTTGTA
34211158 AAATTATCGAAATAC
1 AAATTATCGAAATAC
34211173 ACTTGTCGTG
Statistics
Matches: 367, Mismatches: 68, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
26 27 0.07
27 337 0.92
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:34211227 original size:27 final size:27
Alignment explanation
Indices: 34211154--34211228 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
34211144 ACCCCATATT
* * *
34211154 TGTAAAATTATCGAAATACACTTGTCG
1 TGTAAAATTACCGAAATACCCTTGTAG
34211181 TG-AAAACTTACCGAAATACCCTTGTAG
1 TGTAAAA-TTACCGAAATACCCTTGTAG
* *
34211208 TGTAAAATGACCGACATACCC
1 TGTAAAATTACCGAAATACCC
34211229 CTATAGGGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 4 0.10
27 33 0.80
28 4 0.10
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:34211243 original size:27 final size:27
Alignment explanation
Indices: 34211190--34211245 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
34211180 GTGAAAACTT
* * *
34211190 ACCGAAATACCCTTGTAGTGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
34211217 ACCGACATACCCCTATAGGGTACAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
34211244 AC
1 AC
34211246 TGTTTTGCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (27 bp):
ACCGAAATACCCCTATAGGGTAAAATG
Found at i:34213230 original size:28 final size:28
Alignment explanation
Indices: 34213190--34213278 Score: 142
Period size: 28 Copynumber: 3.2 Consensus size: 28
34213180 TGGGAAGCAG
34213190 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
34213218 TTGGGCCTGATGGGCCATATGAATGTGT
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
34213246 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
34213274 TTGGG
1 TTGGG
34213279 ACTAAAGGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.19, C:0.15, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:34213654 original size:27 final size:27
Alignment explanation
Indices: 34213598--34213990 Score: 350
Period size: 27 Copynumber: 14.7 Consensus size: 27
34213588 TAATAAAGAG
*
34213598 AAATTACCGAAATACCC-CGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
34213624 AAATTACCGAAACACCATCGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
34213651 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
34213678 AAATTACCGAAATACCATTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
34213705 AAATTACTGAAATAACCTCAATTATG--
1 AAATTACCGAAATACCCTCGATT-TGTA
** * *
34213731 AAATTACAAAAATACCTTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
34213758 AAATTACCGAAATACCCCCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
34213785 AAATTATCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * **
34213812 AAATTATCAAAACACCCTAAAATTT-TA
1 AAATTACCGAAATACCCT-CGATTTGTA
*
34213839 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
34213866 AAATTATCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
34213893 AAATCACCAAAACACCC-CTATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
34213919 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
34213946 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
34213973 AAATGACCGACATACCCT
1 AAATTACCGAAATACCCT
34213991 TGTTGGGTAA
Statistics
Matches: 305, Mismatches: 54, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
25 2 0.01
26 61 0.20
27 235 0.77
28 7 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:34213858 original size:134 final size:133
Alignment explanation
Indices: 34213598--34213936 Score: 382
Period size: 134 Copynumber: 2.5 Consensus size: 133
34213588 TAATAAAGAG
* * * * ** *
34213598 AAATTACCGAAATACCC-CGATTTGTGAAATTACCGAAACACCATCGATTTTTAAAATTATCGAA
1 AAATTATCAAAATACCCTCAATTTGTAAAATTACCGAAA-ACCCCCGATTTGTAAAATTATCGAA
* * * ** *
34213662 ACACCCTCGATTTGTAAAATTACCGAAATACCATTGATTTGTAAAATTACTGAAATAACCTCAAT
65 ACACCCTCAATTTGTAAAATTACCAAAACACCATAAATTTGTAAAATTACCGAAATAACCTCAAT
34213727 TATG-
130 T-TGA
* *
34213731 AAATTA-CAAAAATACCTTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTATCGA
1 AAATTATC-AAAATACCCTCAATTTGTAAAATTACCGAAA-ACCCCCGATTTGTAAAATTATCGA
* * *
34213795 AACACCCTCAATTTGTAAAATTATCAAAACACCCTAAAATTT-TAAAATTACCGAAATACCCTCA
64 AACACCCTCAATTTGTAAAATTACCAAAACACCAT-AAATTTGTAAAATTACCGAAATAACCTCA
34213859 ATTTGTA
128 ATTTG-A
* * *
34213866 AAATTATCAAAATACCCTCGATTTGTAAAATCACC-AAAACACCCCTATTTGTAAAATTATCGAA
1 AAATTATCAAAATACCCTCAATTTGTAAAATTACCGAAAAC-CCCCGATTTGTAAAATTATCGAA
*
34213930 ATACCCT
65 ACACCCT
34213937 TGTAGTGTAA
Statistics
Matches: 175, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
132 1 0.01
133 17 0.10
134 122 0.70
135 34 0.19
136 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (133 bp):
AAATTATCAAAATACCCTCAATTTGTAAAATTACCGAAAACCCCCGATTTGTAAAATTATCGAAA
CACCCTCAATTTGTAAAATTACCAAAACACCATAAATTTGTAAAATTACCGAAATAACCTCAATT
TGA
Found at i:34213918 original size:161 final size:161
Alignment explanation
Indices: 34213598--34213935 Score: 434
Period size: 161 Copynumber: 2.1 Consensus size: 161
34213588 TAATAAAGAG
* * *
34213598 AAATTACCGAAATA-CCCCGATTTGTGAAATTACCGAAACACCATCGATTTTTAAAATTATCGAA
1 AAATTACCGAAATACCCCCGATTTGTGAAATTACCGAAACACCATCAATTTGTAAAATTATCAAA
** ** *
34213662 ACACCCTCGATTTGTAAAATTACCGAAATACCATTGATTTGTAAAATTACTGAAATAACCTCAAT
66 ACACCCTAAATTTGTAAAATTACCGAAATACCATCAATTTGTAAAATTACTAAAATAACCTCAAT
* * *
34213727 TATGAAATTACAAAAATACCTTCAATTTGTA
131 TATGAAATCACAAAAACACCTCCAATTTGTA
* *
34213758 AAATTACCGAAATACCCCCGATTTGTGAAATTATCGAAACACCCTCAATTTGTAAAATTATCAAA
1 AAATTACCGAAATACCCCCGATTTGTGAAATTACCGAAACACCATCAATTTGTAAAATTATCAAA
* * *
34213823 ACACCCTAAAATTT-TAAAATTACCGAAATACCCTCAATTTGTAAAATTA-TCAAAATACCCTCG
66 ACACCCT-AAATTTGTAAAATTACCGAAATACCATCAATTTGTAAAATTACT-AAAATAACCTCA
* *
34213886 ATT-TGTAAAATCACCAAAACACC-CCTATTTGTA
129 ATTATG--AAATCACAAAAACACCTCCAATTTGTA
*
34213919 AAATTATCGAAATACCC
1 AAATTACCGAAATACCC
34213936 TTGTAGTGTA
Statistics
Matches: 154, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
160 17 0.11
161 120 0.78
162 17 0.11
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (161 bp):
AAATTACCGAAATACCCCCGATTTGTGAAATTACCGAAACACCATCAATTTGTAAAATTATCAAA
ACACCCTAAATTTGTAAAATTACCGAAATACCATCAATTTGTAAAATTACTAAAATAACCTCAAT
TATGAAATCACAAAAACACCTCCAATTTGTA
Found at i:34213991 original size:27 final size:27
Alignment explanation
Indices: 34213915--34214006 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
34213905 CACCCCTATT
* *
34213915 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
34213942 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
34213969 TGTAAAATGACCGACATACCCTTGTTG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
34213996 GGTAAAATGAC
1 TGTAAAATGAC
34214007 TATTTTTCCC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:34214459 original size:27 final size:26
Alignment explanation
Indices: 34214422--34214536 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
34214412 AGCATGTCTG
*
34214422 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
34214448 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
34214475 CCAGAACAGATATTTGTGGCATAGCTA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
34214502 CCAAAAACAGATATTTGTGGCATAGCCA
1 CC-AGAACAGATA-TTGTGACAGAGCCA
34214530 CCAGAAC
1 CCAGAAC
34214537 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 12 0.15
27 42 0.53
28 25 0.32
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:34214530 original size:55 final size:53
Alignment explanation
Indices: 34214422--34214536 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 53
34214412 AGCATGTCTG
* *
34214422 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGTCACCAAAAACAGATATTGTGGCAGAGCCA
* * *
34214475 CCAGAACAGATATTTGTGGCATAG-CTACCAAAAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGTC-ACCAAAAACAGATA-TTGTGGCAGAGCCA
34214530 CCAGAAC
1 CCAGAAC
34214537 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 13 0.24
54 21 0.39
55 20 0.37
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGTCACCAAAAACAGATATTGTGGCAGAGCCA
Found at i:34214709 original size:27 final size:26
Alignment explanation
Indices: 34214640--34214725 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
34214630 AAATTAACCC
* * * *
34214640 TAGGGATATAATGGTAATTTTACACC
1 TAGGGGTATAATAGTAATTTTATACT
*
34214666 TAGGGGTATAATGGTAATTTTCATACT
1 TAGGGGTATAATAGTAATTTT-ATACT
** *
34214693 TAGGGGTATTTTAGTAAATTTAACTACT
1 TAGGGGTATAATAGT-AATTTTA-TACT
34214721 TAGGG
1 TAGGG
34214726 TTTACATACA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.40
27 16 0.32
28 14 0.28
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.38
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTATACT
Found at i:34218145 original size:27 final size:27
Alignment explanation
Indices: 34218074--34218188 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 27
34218064 AGCATGGCTG
* *
34218074 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* *
34218100 CCAGATACAGA-AATCGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
* * *
34218127 CCAGAATAGATATTTGTGGCATAGCTA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* * *
34218154 CAAAAAACAGATATTTGTGGCATAGCCA
1 C-CAGAACAGATATTTGTGGCAGAGCCA
34218182 CCAGAAC
1 CCAGAAC
34218189 GCTTCCTCCA
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
26 10 0.14
27 38 0.54
28 23 0.32
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:34219642 original size:50 final size:51
Alignment explanation
Indices: 34219567--34219801 Score: 180
Period size: 50 Copynumber: 4.7 Consensus size: 51
34219557 TGAGTACACG
* * *
34219567 TGTGTAGTACTAAGTGCAGACTACTACGTGTAAC-ATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAATACTGTTAAGTCACA
* * * ** *
34219617 TGTGTAGCACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAAT-ACTGTTAAGTCACA
* * * *
34219668 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT--GGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-ATACTGTTAAGTCACA
* * * * *
34219718 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGAAT--TGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AATACTGTTAAGTCACA
* * * *
34219767 TGTGTAGTACTAAGCGCAAGCTACTATGCGTATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
34219802 GATAGCTTCG
Statistics
Matches: 152, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 37 0.24
50 71 0.47
51 36 0.24
52 4 0.03
53 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAATACTGTTAAGTCACA
Found at i:34219741 original size:101 final size:101
Alignment explanation
Indices: 34219563--34219750 Score: 270
Period size: 101 Copynumber: 1.9 Consensus size: 101
34219553 ATTGTGAGTA
* * *
34219563 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTAACATACTGTTAAGTCGCATGTGTAGCACT
1 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTAACAGACTGTGAAGTCACATGTGTAGCACT
*
34219628 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
66 AAGTGCAAGCTACTATGCGTACTCAATGACTTCGAT
* * * * *
34219664 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTAACAGACT-GTGAAGTCACATGTGTAGCAC
*
34219728 TAAGTGCAAGCTACTATGTGTAC
65 TAAGTGCAAGCTACTATGCGTAC
34219751 CGAATTGTTG
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
100 1 0.01
101 75 0.99
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTAACAGACTGTGAAGTCACATGTGTAGCACT
AAGTGCAAGCTACTATGCGTACTCAATGACTTCGAT
Found at i:34221836 original size:16 final size:17
Alignment explanation
Indices: 34221815--34221847 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
34221805 TGGGTTCGGC
34221815 TATGG-AGAAAAGAAAA
1 TATGGAAGAAAAGAAAA
34221831 TATGGAAGAAAAGAAAA
1 TATGGAAGAAAAGAAAA
34221848 GGTGAGAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (17 bp):
TATGGAAGAAAAGAAAA
Found at i:34229241 original size:22 final size:22
Alignment explanation
Indices: 34229211--34229258 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
34229201 AAAAAATTTA
34229211 TTTA-ATATAAATATATTGAAG
1 TTTATATATAAATATATTGAAG
34229232 TTTATATATAAATATATTGAAG
1 TTTATATATAAATATATTGAAG
34229254 TTTAT
1 TTTAT
34229259 CTTTGGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (22 bp):
TTTATATATAAATATATTGAAG
Found at i:34233850 original size:25 final size:25
Alignment explanation
Indices: 34233800--34233850 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
34233790 CACTTATTAT
* *
34233800 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTATACCCCTAG
*
34233825 GTGAAAATGA-CTATTATACCCTTAG
1 GTGAAAATGACCT-TTATACCCCTAG
34233850 G
1 G
34233851 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:34233905 original size:10 final size:10
Alignment explanation
Indices: 34233894--34233938 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
34233884 TTTGTACATA
*
34233894 ATATGCCATA
1 ATATGCCATG
34233904 ATATGCCATG
1 ATATGCCATG
*
34233914 ATATGAACATG
1 ATATG-CCATG
34233925 ATATGCCATG
1 ATATGCCATG
34233935 ATAT
1 ATAT
34233939 ATGTATATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 22 0.71
11 9 0.29
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:34234053 original size:24 final size:25
Alignment explanation
Indices: 34233995--34234053 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
34233985 AGGGTTGTTC
* *
34233995 CCCAATTTACCAAAAAGGGCTTTGT
1 CCCAAGTTATCAAAAAGGGCTTTGT
* *
34234020 CGCAATTTATCAAAAAGGGCTTTG-
1 CCCAAGTTATCAAAAAGGGCTTTGT
*
34234044 CCCCAGTTAT
1 CCCAAGTTAT
34234054 TTAAAGAGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 7 0.24
25 22 0.76
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (25 bp):
CCCAAGTTATCAAAAAGGGCTTTGT
Done.