Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 111 of 259
Found at i:35817254 original size:42 final size:42
Alignment explanation
Indices: 35817201--35817314 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
35817191 TTAGAATTTA
*
35817201 CGTGTAAGACCATATCTGGGATATGGCATCAG-TATGAGAAT-T
1 CGTGTAAGACCATATCTGGGATATGGCAT-AGATATGAG-ATCC
* * * *
35817243 CGTGTAAGACCATAGT-GGGGCTATTGGAATTGATATGAGATCC
1 CGTGTAAGACCATA-TCTGGGATA-TGGCATAGATATGAGATCC
*
35817286 CATGTAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
35817315 TGGTATATTA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
42 28 0.48
43 30 0.52
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATAGATATGAGATCC
Found at i:35822842 original size:27 final size:27
Alignment explanation
Indices: 35822811--35822988 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
35822801 TAAATTGTAC
35822811 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
35822838 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35822864 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35822892 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35822920 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35822947 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35822974 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35822989 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35822952 original size:82 final size:81
Alignment explanation
Indices: 35822812--35822967 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
35822802 AAATTGTACA
* *
35822812 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
35822877 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
35822893 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
35822957 GTGCGAGTTGA
64 GTGCGAATTGA
35822968 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35822979 original size:82 final size:81
Alignment explanation
Indices: 35822808--35822988 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
35822798 GATTAAATTG
* *
35822808 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
35822873 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
35822889 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
35822953 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35822971 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35822989 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:35830958 original size:27 final size:27
Alignment explanation
Indices: 35830927--35831104 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
35830917 TAAATTGTAC
35830927 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
35830954 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35830980 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35831008 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35831036 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
35831063 AGCACTAAGTGTGAGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35831090 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35831105 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35830988 original size:54 final size:55
Alignment explanation
Indices: 35830927--35831075 Score: 176
Period size: 55 Copynumber: 2.7 Consensus size: 55
35830917 TAAATTGTAC
*
35830927 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAACGAATATGT
* * ** *** *
35830980 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAACGAATATGT
* *
35831036 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTG
35831076 AGAGTTGATT
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.48
55 39 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAACGAATATGT
Found at i:35831095 original size:82 final size:81
Alignment explanation
Indices: 35830924--35831104 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
35830914 GATTAAATTG
* *
35830924 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
*
35830989 GTGTGCGAATTGACCA
66 GTGTGAGAATTGACCA
* * *** *
35831005 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
35831069 AAGTGTGAGAGTTGATTA
64 AAGTGTGAGAATTGACCA
* *
35831087 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35831105 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGAGAATTGACCA
Found at i:35833791 original size:39 final size:39
Alignment explanation
Indices: 35833737--35833889 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
35833727 CAGCGATGTT
* * *
35833737 TATCCGGACTTAGGGTCCGCAAGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
*
35833776 TATCCGGACTTAGGGTCCGCAGGCTACGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* *
35833815 TATTCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
*
35833854 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
35833890 ATATGTTCGG
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:35833916 original size:78 final size:78
Alignment explanation
Indices: 35833741--35833917 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 78
35833731 GATGTTTATC
** * * * *
35833741 CGGACTTAGGGTCCGCAAGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTACGTG
1 CGGACTTAAAGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTG
*
35833806 CTGGAATTATATT
66 CTGGAAATATATT
* *
35833819 CGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTG
1 CGGACTTAAAGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTG
*
35833884 CTGGAAATATGTT
66 CTGGAAATATATT
*
35833897 CGGGC-TAAAGTCCCACAGGCT
1 CGGACTTAAAGT-CCACAGGCT
35833918 TCGAGCTGGT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 5 0.06
78 84 0.94
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
CGGACTTAAAGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTACGTG
CTGGAAATATATT
Found at i:35836859 original size:90 final size:91
Alignment explanation
Indices: 35836705--35836884 Score: 353
Period size: 90 Copynumber: 2.0 Consensus size: 91
35836695 CTTAGTGAAG
35836705 ATGAACCGAAAAGGTTGTAACAGCACCATTTTTCAGTGAAATCAGAACAGTGGTTTAGGGACCAC
1 ATGAACCGAAAAGGTTGTAACAGCACCATTTTTCAGTGAAATCAGAACAGTGGTTTAGGGACCAC
35836770 AAATTCGATCCAAAAATAAAATTTAA
66 AAATTCGATCCAAAAATAAAATTTAA
35836796 ATGAACCG-AAAGGTTGTAACAGCACCATTTTTCAGTGAAATCAGAACAGTGGTTTAGGGACCAC
1 ATGAACCGAAAAGGTTGTAACAGCACCATTTTTCAGTGAAATCAGAACAGTGGTTTAGGGACCAC
35836860 AAATTCGATCCAAAAATAAAATTTA
66 AAATTCGATCCAAAAATAAAATTTA
35836885 CTTTTATTTT
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 81 0.91
91 8 0.09
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (91 bp):
ATGAACCGAAAAGGTTGTAACAGCACCATTTTTCAGTGAAATCAGAACAGTGGTTTAGGGACCAC
AAATTCGATCCAAAAATAAAATTTAA
Found at i:35841241 original size:80 final size:80
Alignment explanation
Indices: 35841125--35841310 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
35841115 AGTAACTCAT
* * * *
35841125 ACAATGCCTTCGGGACTTAACCCAGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
35841189 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
35841204 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
35841268 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
35841285 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
35841311 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 11 0.12
80 71 0.76
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:35841270 original size:40 final size:40
Alignment explanation
Indices: 35841127--35841310 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
35841117 TAACTCATAC
* * *
35841127 AATGCCTTCGGGACTTAACCCAGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
35841167 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
35841207 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
35841247 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
35841288 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
35841311 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 104 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:35844271 original size:56 final size:56
Alignment explanation
Indices: 35844206--35844381 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
35844196 ACAAGGGATG
*
35844206 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
35844262 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
35844318 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
35844374 ATGGGCAA
1 ATGGGCAA
35844382 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:35845784 original size:120 final size:118
Alignment explanation
Indices: 35845566--35845810 Score: 314
Period size: 120 Copynumber: 2.1 Consensus size: 118
35845556 GGACTAAGAT
* *
35845566 CCGAAGGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTGGTGCGGGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
* * ** *
35845631 ATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* * * *
35845685 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA
* * *
35845750 TAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
35845804 CCGAAGG
1 CCGAAGG
35845811 TACGAGATTT
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
119 50 0.46
120 57 0.52
121 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:35845791 original size:40 final size:40
Alignment explanation
Indices: 35845513--35845777 Score: 331
Period size: 40 Copynumber: 6.7 Consensus size: 40
35845503 TCGAATGATG
* * * * *
35845513 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
35845553 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
35845593 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGGGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35845632 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
35845672 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
35845712 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
35845753 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
35845778 AACGAGTAGC
Statistics
Matches: 199, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
39 31 0.16
40 158 0.79
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35853785 original size:40 final size:40
Alignment explanation
Indices: 35853546--35853771 Score: 348
Period size: 40 Copynumber: 5.7 Consensus size: 40
35853536 TTGAATGATG
*
35853546 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
**
35853586 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35853626 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35853666 TCCGGGTTAAGTCTCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
35853706 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
35853747 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
35853772 AATGAGTAGC
Statistics
Matches: 172, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 168 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35853789 original size:120 final size:120
Alignment explanation
Indices: 35853546--35853804 Score: 337
Period size: 120 Copynumber: 2.2 Consensus size: 120
35853536 TTGAATGATG
*
35853546 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
* * **
35853611 GTGCGAGTTACTAAATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAA
* * **
35853666 TCCGGGTTAAGTCTCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
* * *
35853730 TGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGCTATA
65 TGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAA
* *
35853786 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
35853805 TATGTGATTT
Statistics
Matches: 121, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
119 16 0.13
120 103 0.85
121 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:35859738 original size:5 final size:5
Alignment explanation
Indices: 35859728--35859755 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
35859718 CAACTTTTAC
35859728 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
35859756 GTGCGCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:35861474 original size:14 final size:14
Alignment explanation
Indices: 35861455--35861486 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
35861445 AGGTCATTTA
35861455 GCCCAACCAAACTG
1 GCCCAACCAAACTG
35861469 GCCCAACCAAACTG
1 GCCCAACCAAACTG
35861483 GCCC
1 GCCC
35861487 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:35866599 original size:14 final size:14
Alignment explanation
Indices: 35866580--35866611 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
35866570 AGGTCATTTA
35866580 GCCCAACCAAACTG
1 GCCCAACCAAACTG
35866594 GCCCAACCAAACTG
1 GCCCAACCAAACTG
35866608 GCCC
1 GCCC
35866612 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:35872092 original size:15 final size:15
Alignment explanation
Indices: 35872072--35872103 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
35872062 AAATACTATT
35872072 GTCTGCAAATAACAA
1 GTCTGCAAATAACAA
35872087 GTCTGCAAATAACAA
1 GTCTGCAAATAACAA
35872102 GT
1 GT
35872104 GAGAAACCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.22
Consensus pattern (15 bp):
GTCTGCAAATAACAA
Found at i:35875589 original size:22 final size:23
Alignment explanation
Indices: 35875564--35875607 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
35875554 AAAACTATAA
35875564 TAAGTTTGACTT-AATTTTAGTG
1 TAAGTTTGACTTAAATTTTAGTG
35875586 TAAGTTTGACTTAAATTTTAGT
1 TAAGTTTGACTTAAATTTTAGT
35875608 TTATTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.50
Consensus pattern (23 bp):
TAAGTTTGACTTAAATTTTAGTG
Found at i:35876041 original size:24 final size:24
Alignment explanation
Indices: 35875991--35876041 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
35875981 GGTTAAGATC
* * *
35875991 TTTTAGAGTTTAAGATTTTATGTT
1 TTTTAAAGTTTAAGATTTTAGGAT
35876015 TTTTAAAGTTT-AGAGTTTTAGGAT
1 TTTTAAAGTTTAAGA-TTTTAGGAT
35876039 TTT
1 TTT
35876042 AGGGTTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.25, C:0.00, G:0.18, T:0.57
Consensus pattern (24 bp):
TTTTAAAGTTTAAGATTTTAGGAT
Found at i:35876505 original size:49 final size:46
Alignment explanation
Indices: 35876405--35876511 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 46
35876395 TAATATAATG
**
35876405 ATTTTGCCTTTTAACTTAATGGGTAAACATTTATCAAAACGAAGTA
1 ATTTTGCCTTTTAACTTAAACGGTAAACATTTATCAAAACGAAGTA
* * *
35876451 ATTTTGCCTTTTAACTTTAGAAACGGTAAACATTTATTAAAATGACGTA
1 ATTTTGCCTTTTAAC-TT--AAACGGTAAACATTTATCAAAACGAAGTA
*
35876500 GTTTTGCCTTTT
1 ATTTTGCCTTTT
35876512 CTTATTTAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
46 15 0.29
47 2 0.04
49 35 0.67
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (46 bp):
ATTTTGCCTTTTAACTTAAACGGTAAACATTTATCAAAACGAAGTA
Found at i:35881490 original size:57 final size:57
Alignment explanation
Indices: 35881421--35881611 Score: 240
Period size: 57 Copynumber: 3.4 Consensus size: 57
35881411 TAAATCACCA
* * * * *
35881421 GGAAAGGTAAGCCTCTGTGAAGAACATGTTAAAGGAGAACCTTTGTGGAAAAACTTT
1 GGAAAGGTAAGCCTTTGTGGAGAACATGTTAAAGGACAACCTTTATGGCAAAACTTT
* * * * *
35881478 GGAAAGGTAAGCCTTTATGGCGAA-ATTGTTAAAGGACAGCCTTTATGGCACAACTCT
1 GGAAAGGTAAGCCTTTGTGGAGAACA-TGTTAAAGGACAACCTTTATGGCAAAACTTT
* * * *
35881535 AGAAAGGTAAGCCTTTGTGGTGAACTTGTTAAAGGACAACCTTTATGCCAAAACTTT
1 GGAAAGGTAAGCCTTTGTGGAGAACATGTTAAAGGACAACCTTTATGGCAAAACTTT
35881592 GGAAAGGTAAGCCTTTGTGG
1 GGAAAGGTAAGCCTTTGTGG
35881612 CATCTCTGTA
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
56 1 0.01
57 112 0.99
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.27
Consensus pattern (57 bp):
GGAAAGGTAAGCCTTTGTGGAGAACATGTTAAAGGACAACCTTTATGGCAAAACTTT
Found at i:35881492 original size:29 final size:29
Alignment explanation
Indices: 35881460--35881613 Score: 104
Period size: 29 Copynumber: 5.4 Consensus size: 29
35881450 TAAAGGAGAA
* *
35881460 CCTTTGTGGAAAAACTTTGGAAAGGTAAG
1 CCTTTATGGCAAAACTTTGGAAAGGTAAG
* *
35881489 CCTTTATGGCGAAA--TTGTTAAAGG-ACAG
1 CCTTTATGGCAAAACTTTG-GAAAGGTA-AG
* * *
35881517 CCTTTATGGCACAACTCTAGAAAGGTAAG
1 CCTTTATGGCAAAACTTTGGAAAGGTAAG
* ** * *
35881546 CCTTTGTGG-TGAAC-TTGTTAAAGG-ACAA
1 CCTTTATGGCAAAACTTTG-GAAAGGTA-AG
*
35881574 CCTTTATGCCAAAACTTTGGAAAGGTAAG
1 CCTTTATGGCAAAACTTTGGAAAGGTAAG
*
35881603 CCTTTGTGGCA
1 CCTTTATGGCA
35881614 TCTCTGTAAA
Statistics
Matches: 91, Mismatches: 24, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
27 6 0.07
28 35 0.38
29 44 0.48
30 6 0.07
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (29 bp):
CCTTTATGGCAAAACTTTGGAAAGGTAAG
Found at i:35881518 original size:28 final size:28
Alignment explanation
Indices: 35881487--35881581 Score: 86
Period size: 28 Copynumber: 3.4 Consensus size: 28
35881477 TGGAAAGGTA
35881487 AGCCTTTATGGCGAAATTGTTAAAGGAC
1 AGCCTTTATGGCGAAATTGTTAAAGGAC
* * *
35881515 AGCCTTTATGGC-ACAACTCTAGAAAGGTA-
1 AGCCTTTATGGCGA-AATTGT-TAAAGG-AC
* * *
35881544 AGCCTTTGTGGTGAACTTGTTAAAGGAC
1 AGCCTTTATGGCGAAATTGTTAAAGGAC
*
35881572 AACCTTTATG
1 AGCCTTTATG
35881582 CCAAAACTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
27 2 0.04
28 29 0.57
29 18 0.35
30 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (28 bp):
AGCCTTTATGGCGAAATTGTTAAAGGAC
Found at i:35889228 original size:27 final size:28
Alignment explanation
Indices: 35889175--35889228 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
35889165 TAAAATTTTA
*
35889175 AAAAAAATAAAATATTATAAAGGTCATG
1 AAAAAAATAAAATATTATAAAAGTCATG
* * *
35889203 AAAAATATAAAA-ATTTTAAAATTCAT
1 AAAAAAATAAAATATTATAAAAGTCAT
35889229 TATCAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.30
Consensus pattern (28 bp):
AAAAAAATAAAATATTATAAAAGTCATG
Found at i:35892984 original size:146 final size:151
Alignment explanation
Indices: 35892696--35892995 Score: 484
Period size: 146 Copynumber: 2.0 Consensus size: 151
35892686 GAATCATCCC
* *
35892696 CATTTTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATG
1 CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTACCAAAGGTATCAATG
35892761 TTTGCTACCATATAAAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
66 -TTGCTACCATAT--AATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
35892826 CAAGCCTAAAATCAGTGAAATCAA
128 CAAGCCTAAAATCAGTGAAATCAA
* *
35892850 CATTCTGCAGAATATAAGATAAAATAAAAACTATACACCATAGAATGCTACCAAAGGTATCAATG
1 CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTACCAAAGGTATCAATG
* *
35892915 -T-CT-GC-TAT-ATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAGAACGTAGAATTCAA
66 TTGCTACCATATAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAGAACGTAAAATTCAA
35892975 GCCTAAAATCAGTGAAATCAA
131 GCCTAAAATCAGTGAAATCAA
35892996 TCTATCTTAC
Statistics
Matches: 140, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
146 72 0.51
149 3 0.02
150 1 0.01
151 2 0.01
152 1 0.01
154 61 0.44
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (151 bp):
CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTACCAAAGGTATCAATG
TTGCTACCATATAATGACAGTTGATGAAGGAAGCAAACTTTTTCTTTGAAGAACGTAAAATTCAA
GCCTAAAATCAGTGAAATCAA
Found at i:35893928 original size:26 final size:27
Alignment explanation
Indices: 35893884--35893937 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 27
35893874 TATTGTTTAA
*
35893884 TTTTAATTTTTTTCATTTCTAACATTTT
1 TTTTAATTTTTTTCATTTC-AAAATTTT
35893912 TTTTAA-TTTTTTC-TTTCAAAATTTT
1 TTTTAATTTTTTTCATTTCAAAATTTT
35893937 T
1 T
35893938 GTGCTGAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 8 0.32
26 4 0.16
27 7 0.28
28 6 0.24
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTTAATTTTTTTCATTTCAAAATTTT
Found at i:35894047 original size:15 final size:16
Alignment explanation
Indices: 35894029--35894073 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 16
35894019 AATATTAAAA
*
35894029 TTTTAAGTTTTTAATT
1 TTTTAATTTTTTAATT
35894045 TTTTAATTTTTTAA-T
1 TTTTAATTTTTTAATT
35894060 TTTTAATTTTTTAA
1 TTTTAATTTTTTAA
35894074 AGATTTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTAATTTTTTAATT
Found at i:35894055 original size:9 final size:8
Alignment explanation
Indices: 35894029--35894073 Score: 74
Period size: 8 Copynumber: 5.8 Consensus size: 8
35894019 AATATTAAAA
*
35894029 TTTTAAGT
1 TTTTAATT
35894037 TTTTAATT
1 TTTTAATT
35894045 TTTTAATT
1 TTTTAATT
35894053 TTTTAA-T
1 TTTTAATT
35894060 TTTTAATT
1 TTTTAATT
35894068 TTTTAA
1 TTTTAA
35894074 AGATTTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
7 7 0.20
8 28 0.80
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTTAATT
Found at i:35894095 original size:8 final size:8
Alignment explanation
Indices: 35894023--35894095 Score: 67
Period size: 8 Copynumber: 8.9 Consensus size: 8
35894013 ATATTAAATA
*
35894023 TTAAAATT
1 TTAAATTT
*
35894031 TTAAGTTT
1 TTAAATTT
35894039 TT-AATTT
1 TTAAATTT
*
35894046 TTTAATTT
1 TTAAATTT
*
35894054 TTTAATTT
1 TTAAATTT
*
35894062 TTAATTTT
1 TTAAATTT
35894070 TTAAAGATTT
1 TT-AA-ATTT
35894080 TTATAATTT
1 TTA-AATTT
35894089 TTAAATT
1 TTAAATT
35894096 AACATATAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
7 6 0.11
8 33 0.60
9 10 0.18
10 6 0.11
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (8 bp):
TTAAATTT
Found at i:35894304 original size:28 final size:28
Alignment explanation
Indices: 35894247--35894314 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
35894237 ATTTTTAGAT
* * *
35894247 TTTAGGGTTTATGATTTATGGGTTATAG
1 TTTAGGGTTTAGGATTTATGGATTACAG
*
35894275 TTTAGGGTTTGGGATTTAT-GATCTACAG
1 TTTAGGGTTTAGGATTTATGGAT-TACAG
35894303 TTTATGGGTTTA
1 TTTA-GGGTTTA
35894315 AAAATTAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 2 0.06
28 25 0.76
29 6 0.18
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.49
Consensus pattern (28 bp):
TTTAGGGTTTAGGATTTATGGATTACAG
Found at i:35894464 original size:22 final size:22
Alignment explanation
Indices: 35894374--35894468 Score: 74
Period size: 21 Copynumber: 4.4 Consensus size: 22
35894364 GGGTTAGAGT
35894374 TTTAAGGGTTTATGATTTGAGA
1 TTTAAGGGTTTATGATTTGAGA
* * *
35894396 TTT-AGGGTTTAGGGTGTTGGGA
1 TTTAAGGGTTTATGAT-TTGAGA
* *
35894418 -TTAA-GGTTTATCG-TTTATAGT
1 TTTAAGGGTTTAT-GATTT-GAGA
*
35894439 TTTAAGGGTTTATAATTTGAGA
1 TTTAAGGGTTTATGATTTGAGA
35894461 TTT-AGGGT
1 TTTAAGGGT
35894469 CTAGTGTTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
20 2 0.04
21 25 0.45
22 19 0.34
23 10 0.18
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.46
Consensus pattern (22 bp):
TTTAAGGGTTTATGATTTGAGA
Found at i:35894546 original size:66 final size:66
Alignment explanation
Indices: 35894430--35894554 Score: 187
Period size: 66 Copynumber: 1.9 Consensus size: 66
35894420 AAGGTTTATC
* * * *
35894430 GTTTATAGTTTTAAGGGTTTATAATTTGAGATTTAGGGTCTAGTGTTTAAAGAGTTATTAATTAG
1 GTTTATAGTTTTAAGGGTTTATAATTAGAGATTTAGGGTCCAGGGGTTAAAGAGTTATTAATTAG
35894495 T
66 T
* * *
35894496 GTTTATAGTTTTAAGGGTTTATGATTAGAGATTTAGGGTCCGGGGGTTAAAGGGTTATT
1 GTTTATAGTTTTAAGGGTTTATAATTAGAGATTTAGGGTCCAGGGGTTAAAGAGTTATT
35894555 GATTTAAGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.26, C:0.02, G:0.27, T:0.44
Consensus pattern (66 bp):
GTTTATAGTTTTAAGGGTTTATAATTAGAGATTTAGGGTCCAGGGGTTAAAGAGTTATTAATTAG
T
Found at i:35895302 original size:41 final size:40
Alignment explanation
Indices: 35895218--35895512 Score: 351
Period size: 41 Copynumber: 7.2 Consensus size: 40
35895208 TGCTTAATCT
* *
35895218 TTTAGTGGCG-TTT-TTAAAAAAGCGCCGCTAATGCTCGACC
1 TTTAGCGGCGCTTTCTT-AAAAA-CGCCGCTAATGCTCGATC
* *
35895258 TTTAGCGACGCTTTCTTAAAAACACCGCTAATGCTCAGATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTC-GATC
* * ** *
35895299 TTTAGCGGTGATTTCTTAAAAGTGCCGCTAGTGCTCGATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCGATC
* * *
35895339 TTTAGCGGCGCTTTCTTAAAAACGCTGCTTATGCTCAAATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTC-GATC
* *
35895380 TTTAGCGGCGCTTTCTTAAAAAAGTGCCGCTAGTGCTCGATC
1 TTTAGCGGCGCTTTCTT-AAAAA-CGCCGCTAATGCTCGATC
* *
35895422 TTTAGTGGCGCTTTCTTAAAAACGCCGCTAATGCTCACATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTC-GATC
* *
35895463 TTTAGCGGCGCTTTTTTAAAAACGCCGCTAATACTCGATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCGATC
35895503 TTTAGCGGCG
1 TTTAGCGGCG
35895513 TTTTAAAAAA
Statistics
Matches: 216, Mismatches: 32, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
40 79 0.37
41 101 0.47
42 26 0.12
43 10 0.05
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (40 bp):
TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCGATC
Found at i:35895328 original size:81 final size:81
Alignment explanation
Indices: 35895235--35895540 Score: 387
Period size: 81 Copynumber: 3.8 Consensus size: 81
35895225 GCGTTTTTAA
* * * *
35895235 AAAAGCGCCGCTAATGCTCGACCTTTAGCGACGCTTTCTTAAAAACACCGCTAATGCTCAGATCT
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAAATCT
* *
35895300 TTAGCGGTGATTTCTT
66 TTAGCGGCGCTTTCTT
* * * *
35895316 AAAAGTGCCGCTAGTGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCTGCTTATGCTCAAATCT
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAAATCT
35895381 TTAGCGGCGCTTTCTT
66 TTAGCGGCGCTTTCTT
* * * *
35895397 AAAAAAGTGCCGCTAGTGCTCGATCTTTAGTGGCGCTTTCTTAAAAACGCCGCTAATGCTCACAT
1 --AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAAAT
*
35895462 CTTTAGCGGCGCTTTTTT
64 CTTTAGCGGCGCTTTCTT
* * * *** * *
35895480 AAAAACGCCGCTAATACTCGATCTTTAGCGGCGTTTTAAAAAAAAGGCCGCTAATACTCAA
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAA
35895541 TCTATTCGAT
Statistics
Matches: 196, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
81 120 0.61
83 76 0.39
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (81 bp):
AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAAATCT
TTAGCGGCGCTTTCTT
Found at i:35895502 original size:164 final size:163
Alignment explanation
Indices: 35895213--35895512 Score: 440
Period size: 164 Copynumber: 1.8 Consensus size: 163
35895203 AGTTCTGCTT
*
35895213 AATCTTTTAGTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGACCTTTAGCGACGCTTTCTTAAA
1 AATCTTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGACCTTTAGCGACGCTTTCTTAAA
* * ** * *
35895278 AACACCGCTAATGCTCAGATCTTTAGCGGTGATTTCTTAAAAGTGCCGCTAGTGCTCGATCTTTA
66 AACACCGCTAATGCTCACATCTTTAGCGGCGATTTCTTAAAAACGCCGCTAATACTCGATCTTTA
35895343 GCGGCGCTTTCTTAAAAACGCTGCTTATGCTCA
131 GCGGCGCTTTCTTAAAAACGCTGCTTATGCTCA
* * * * *
35895376 AATC-TTTAGCGGCGCTTTCTTAAAAAAGTGCCGCTAGTGCTCGATCTTTAGTGGCGCTTTCTTA
1 AATCTTTTAGCGGCG-TTT-TTAAAAAAGCGCCGCTAATGCTCGACCTTTAGCGACGCTTTCTTA
* * *
35895440 AAAACGCCGCTAATGCTCACATCTTTAGCGGCGCTTTTTTAAAAACGCCGCTAATACTCGATCTT
64 AAAACACCGCTAATGCTCACATCTTTAGCGGCGATTTCTTAAAAACGCCGCTAATACTCGATCTT
35895505 TAGCGGCG
129 TAGCGGCG
35895513 TTTTAAAAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
162 9 0.08
163 7 0.06
164 104 0.87
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (163 bp):
AATCTTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGACCTTTAGCGACGCTTTCTTAAA
AACACCGCTAATGCTCACATCTTTAGCGGCGATTTCTTAAAAACGCCGCTAATACTCGATCTTTA
GCGGCGCTTTCTTAAAAACGCTGCTTATGCTCA
Found at i:35895535 original size:40 final size:39
Alignment explanation
Indices: 35895218--35895543 Score: 268
Period size: 40 Copynumber: 8.0 Consensus size: 39
35895208 TGCTTAATCT
* *
35895218 TTTAGTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGACC
1 TTTAGCGGCGTTTTTAAAAAAG-GCCGCTAATGCTCGATC
*
35895258 TTTAGCGACGCTTTCTTAAAAACA--CCGCTAATGCTCAGATC
1 TTTAGCGGCG-TTT-TTAAAAA-AGGCCGCTAATGCTC-GATC
* *
35895299 TTTAGCGGTGATTTCTT--AAAAGTGCCGCTAGTGCTCGATC
1 TTTAGCGGCG-TTT-TTAAAAAAG-GCCGCTAATGCTCGATC
* * * *
35895339 TTTAGCGGCGCTTTCTT-AAAAACGCTGCTTATGCTCAAATC
1 TTTAGCGGCG-TTT-TTAAAAAAGGCCGCTAATGCTC-GATC
*
35895380 TTTAGCGGCGCTTTCTTAAAAAAGTGCCGCTAGTGCTCGATC
1 TTTAGCGGCG-TTT-TTAAAAAAG-GCCGCTAATGCTCGATC
* * *
35895422 TTTAGTGGCGCTTTCTT-AAAAACGCCGCTAATGCTCACATC
1 TTTAGCGGCG-TTT-TTAAAAAAGGCCGCTAATGCTC-GATC
* * *
35895463 TTTAGCGGCGCTTTTTTAAAAACGCCGCTAATACTCGATC
1 TTTAGCGGCG-TTTTTAAAAAAGGCCGCTAATGCTCGATC
* * *
35895503 TTTAGCGGCGTTTTAAAAAAAAGGCCGCTAATACTCAATC
1 TTTAGCGGCGTTTT-TAAAAAAGGCCGCTAATGCTCGATC
35895543 T
1 T
35895544 ATTCGATTTT
Statistics
Matches: 242, Mismatches: 30, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.00
39 7 0.03
40 98 0.40
41 94 0.39
42 31 0.13
43 11 0.05
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (39 bp):
TTTAGCGGCGTTTTTAAAAAAGGCCGCTAATGCTCGATC
Found at i:35897631 original size:40 final size:40
Alignment explanation
Indices: 35897549--35897770 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
35897539 AACCCAAGTA
* *
35897549 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * * *
35897588 CCTTCGGGTCTTAGCCCAGATATAGTCAATAGCATAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
35897628 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
35897668 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
35897708 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
35897748 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
35897771 CATTCGAATA
Statistics
Matches: 164, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.07
40 149 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:35903968 original size:21 final size:21
Alignment explanation
Indices: 35903929--35903969 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35903919 AAGAACTAAT
* **
35903929 AAAGAAATCTAAACCCTAAAA
1 AAAGAAAACTAAAAACTAAAA
35903950 AAAGAAAACTAAAAACTAAA
1 AAAGAAAACTAAAAACTAAA
35903970 TTATAAGGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.15, G:0.05, T:0.12
Consensus pattern (21 bp):
AAAGAAAACTAAAAACTAAAA
Found at i:35906877 original size:30 final size:30
Alignment explanation
Indices: 35906843--35906903 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
35906833 TCCTTAACTC
35906843 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
35906873 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
35906903 A
1 A
35906904 GGCTCTAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:35922415 original size:42 final size:43
Alignment explanation
Indices: 35922352--35922468 Score: 148
Period size: 43 Copynumber: 2.7 Consensus size: 43
35922342 GAAGTCTGAA
* * *
35922352 CTCGTTGAGTGGTCCGGGTTCGTGA-GGTATG-TAGCATCCGAG
1 CTCGTTGAGAGGTCCGAGTTCGTGATGG-ATGCAAGCATCCGAG
*
35922394 CTCGTTGAGAGGTCCGAGTTCGTTATGGATGCAAGCATCCGAG
1 CTCGTTGAGAGGTCCGAGTTCGTGATGGATGCAAGCATCCGAG
* * *
35922437 CTCATTGAGAGGTCCGAGTTCATGGTGGATGC
1 CTCGTTGAGAGGTCCGAGTTCGTGATGGATGC
35922469 GATTCATGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
42 25 0.38
43 40 0.62
ACGTcount: A:0.18, C:0.20, G:0.35, T:0.27
Consensus pattern (43 bp):
CTCGTTGAGAGGTCCGAGTTCGTGATGGATGCAAGCATCCGAG
Found at i:35928278 original size:40 final size:39
Alignment explanation
Indices: 35928234--35928415 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 39
35928224 AGTGACCATA
* *
35928234 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCAGGCTAAG-TCCGAAGGCATTGGTGCGAGTTACTAAT
*
35928274 TCCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCAGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAT
* * *
35928313 TCCGGGCTAAGGCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCAGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAT
* * *
35928352 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCAGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAT
* * *
35928391 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCAGGCTAAGT-CCGAAGGCATT
35928416 TGAACGAGTA
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 73 0.57
40 54 0.43
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCAGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAT
Found at i:35928295 original size:39 final size:40
Alignment explanation
Indices: 35928194--35928417 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
35928184 TCGAATGATG
* * *
35928194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
35928233 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
35928274 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
35928313 TCCGGGCTAAG-GCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
35928352 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
35928391 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
35928418 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 73 0.45
40 78 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:35928384 original size:79 final size:80
Alignment explanation
Indices: 35928194--35928415 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 80
35928184 TCGAATGATG
* * * * * *
35928194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
* *
35928258 TGTGCGAGTTACTAAT
65 GGTGCGAGTTACTAAA
* * *
35928274 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-ATTCCGGGCTAAG-GCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
35928336 GGTGCGAGTTACTAAA
65 GGTGCGAGTTACTAAA
* * * *
35928352 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
35928416 TGAACGAGTA
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
78 35 0.29
79 58 0.48
80 28 0.23
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:35928448 original size:79 final size:79
Alignment explanation
Indices: 35928247--35928450 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 79
35928237 AGACTAAGAT
* ** * * * *
35928247 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
* *
35928311 ATTCCGGGCTAAGG
66 ATACCGGGCTAAGC
** * *
35928325 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
*
35928389 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * *
35928405 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
35928451 TACGTGATTC
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
78 33 0.31
79 50 0.47
80 23 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
ATACCGGGCTAAGC
Found at i:35933267 original size:26 final size:27
Alignment explanation
Indices: 35933201--35933267 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
35933191 GACTGTGGAA
*
35933201 TGGGTTTTTGAAAATATTTCTCAAAAT
1 TGGGTTTTTGAAAGTATTTCTCAAAAT
** * *
35933228 TGGGTTTTCAAAAGTTTTTCT-AAACCT
1 TGGGTTTTTGAAAGTATTTCTCAAA-AT
35933255 T-GGTTTTTGAAAG
1 TGGGTTTTTGAAAG
35933268 AGATGATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 13 0.41
27 19 0.59
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (27 bp):
TGGGTTTTTGAAAGTATTTCTCAAAAT
Found at i:35934789 original size:27 final size:27
Alignment explanation
Indices: 35934759--35934936 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
35934749 ATATCGAGTC
* * * *
35934759 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
35934786 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
35934813 CGCACACTTAGTGCTTCATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35934841 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35934868 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
35934895 CGCACACTAAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35934922 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35934937 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35934898 original size:82 final size:81
Alignment explanation
Indices: 35934780--35934935 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
35934770 TGCTATATAA
* **
35934780 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTTCATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTAAGTGCAACATAGTCAAA-TCGCA
35934845 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35934862 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTAAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTAAGTGCAACATAGTCAAATCGCA
35934926 CACTTAGTGC
65 CACTTAGTGC
35934936 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTAAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35939636 original size:18 final size:17
Alignment explanation
Indices: 35939613--35939647 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
35939603 GATGGGTTGA
35939613 AATGGGCCATGTGGGCCC
1 AATGGG-CATGTGGGCCC
*
35939631 AATGGGCTTGTGGGCCC
1 AATGGGCATGTGGGCCC
35939648 CACACAGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.14, C:0.26, G:0.40, T:0.20
Consensus pattern (17 bp):
AATGGGCATGTGGGCCC
Found at i:35943626 original size:59 final size:59
Alignment explanation
Indices: 35943533--35943649 Score: 164
Period size: 59 Copynumber: 2.0 Consensus size: 59
35943523 GTGCCACAGA
* * **
35943533 TCACAGAAACACATGCCTCTCAACGGGGCTACTCAAAAGC-ACTCGGACCCTAGCATGTC
1 TCACAGAAACACATGCCTCTCAACAGGGCAACTCAAAAGCAAC-AAGACCCTAGCATGTC
* *
35943592 TCACATAATCACATGCCTCTCAACAGGGCAACTCAAAAGCAACAAGACCCTAGCATGT
1 TCACAGAAACACATGCCTCTCAACAGGGCAACTCAAAAGCAACAAGACCCTAGCATGT
35943650 ATTACATATC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
59 49 0.96
60 2 0.04
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.17
Consensus pattern (59 bp):
TCACAGAAACACATGCCTCTCAACAGGGCAACTCAAAAGCAACAAGACCCTAGCATGTC
Found at i:35944960 original size:13 final size:13
Alignment explanation
Indices: 35944934--35944970 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
35944924 AATTAGGCAC
35944934 TTTTCACATAAAA
1 TTTTCACATAAAA
* *
35944947 TTTTCGCATGAAA
1 TTTTCACATAAAA
35944960 TTTTCACATAA
1 TTTTCACATAA
35944971 GCATAGAAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (13 bp):
TTTTCACATAAAA
Found at i:35948127 original size:24 final size:24
Alignment explanation
Indices: 35948086--35948137 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
35948076 CCTTCATACC
*
35948086 CATATACACATGAACACAT-CTATA
1 CATATACACATAAACACATAC-ATA
35948110 CATATACACA-AAAGCACATACATA
1 CATATACACATAAA-CACATACATA
35948134 CATA
1 CATA
35948138 CCTTCCACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 2 0.08
24 22 0.88
25 1 0.04
ACGTcount: A:0.50, C:0.25, G:0.04, T:0.21
Consensus pattern (24 bp):
CATATACACATAAACACATACATA
Found at i:35949423 original size:126 final size:125
Alignment explanation
Indices: 35949198--35949568 Score: 634
Period size: 126 Copynumber: 2.9 Consensus size: 125
35949188 GTTTTAGCCT
* *
35949198 TAAGAGGATATTCGAATATTCAAAACCAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
*
35949263 CTTCGAATTCTTTAAATACCAAACATTGCCTTTATTTTGAAAATTTTTGAGAGTGAACTGG
66 CTTCGAATTCTTTAAATA-CAAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
*
35949324 TAAGAGGATATTTGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
*
35949389 CTTCAAATTCTTTAAATATCAAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
66 CTTCGAATTCTTTAAATA-CAAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* *
35949450 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTACGGTACGATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
*
35949515 CTTCGAATTCTTTAAATACTGAACATTGCCTTTATTTTGAAAAAATTTTGAGAG
66 CTTCGAATTCTTTAAATAC-AAACATTGCCTTTATTTTG-AAAAATTTTGAGAG
35949569 AAGATCAATG
Statistics
Matches: 232, Mismatches: 11, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
125 1 0.00
126 217 0.94
127 14 0.06
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (125 bp):
TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAATTCTTTAAATACAAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:35949695 original size:13 final size:12
Alignment explanation
Indices: 35949673--35949745 Score: 53
Period size: 13 Copynumber: 6.1 Consensus size: 12
35949663 ATATATAAAT
*
35949673 AATAAATAATAA
1 AATAATTAATAA
*
35949685 TAGTAATTAATAGA
1 -AATAATTAATA-A
35949699 AATAATTAATAA
1 AATAATTAATAA
* *
35949711 AA-AAATAGT--
1 AATAATTAATAA
*
35949720 AATAATAAATAA
1 AATAATTAATAA
35949732 AATAATGTAATAA
1 AATAAT-TAATAA
35949745 A
1 A
35949746 CATTGTTGAT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
9 2 0.04
10 4 0.09
11 5 0.11
12 9 0.20
13 25 0.54
14 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (12 bp):
AATAATTAATAA
Found at i:35949723 original size:21 final size:21
Alignment explanation
Indices: 35949693--35949744 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
35949683 AATAGTAATT
* *
35949693 AATAGAAATAATTAATAAAAA
1 AATAGTAATAATAAATAAAAA
*
35949714 AATAGTAATAATAAATAAAAT
1 AATAGTAATAATAAATAAAAA
35949735 AAT-GTAATAA
1 AATAGTAATAA
35949745 ACATTGTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (21 bp):
AATAGTAATAATAAATAAAAA
Found at i:35949735 original size:33 final size:33
Alignment explanation
Indices: 35949667--35949745 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 33
35949657 CTAACCATAT
*
35949667 ATAAATAATAAATAATAATAGTAATTAATAGAA
1 ATAATTAATAAATAATAATAGTAATTAATAGAA
35949700 ATAATTAATAAA-AA-AATAGTAATAATAAATA-AA
1 ATAATTAATAAATAATAATAGTAAT--T-AATAGAA
35949733 ATAATGTAATAAA
1 ATAAT-TAATAAA
35949746 CATTGTTGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
31 9 0.22
32 2 0.05
33 19 0.46
34 11 0.27
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (33 bp):
ATAATTAATAAATAATAATAGTAATTAATAGAA
Found at i:35949813 original size:21 final size:21
Alignment explanation
Indices: 35949774--35949824 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
35949764 TAATAATATT
*
35949774 AAAAATATGATGATAATAACA
1 AAAAATATGATGACAATAACA
* *
35949795 AAAAATATGTTGACGATAACA
1 AAAAATATGATGACAATAACA
**
35949816 TTAAATATG
1 AAAAATATG
35949825 GGGGATAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (21 bp):
AAAAATATGATGACAATAACA
Found at i:35950040 original size:14 final size:14
Alignment explanation
Indices: 35950021--35950051 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35950011 ATATATTTAC
*
35950021 ATAATAAATATATA
1 ATAATAAATAAATA
35950035 ATAATAAATAAATA
1 ATAATAAATAAATA
35950049 ATA
1 ATA
35950052 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:35950052 original size:19 final size:18
Alignment explanation
Indices: 35950023--35950059 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
35950013 ATATTTACAT
35950023 AATAAATATATAATAATA
1 AATAAATATATAATAATA
35950041 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
35950060 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:35950513 original size:37 final size:37
Alignment explanation
Indices: 35950463--35950537 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
35950453 GATAGAGTTA
*
35950463 GTGGGGGTGATGGACGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGACGTAGTGGATAGTTTAGTAGGGT
*
35950500 GTGGGGGTGATGGAGGTAGTGGATAGTTTAGTAGGGT
1 GTGGGGGTGATGGACGTAGTGGATAGTTTAGTAGGGT
35950537 G
1 G
35950538 ATGGAGTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.17, C:0.01, G:0.52, T:0.29
Consensus pattern (37 bp):
GTGGGGGTGATGGACGTAGTGGATAGTTTAGTAGGGT
Found at i:35950565 original size:29 final size:29
Alignment explanation
Indices: 35950503--35950566 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
35950493 GTAGGGTGTG
35950503 GGGGTGATGGAGGTAGTGGATAGTTTAGT
1 GGGGTGATGGAGGTAGTGGATAGTTTAGT
* * *
35950532 AGGGTGATGGAGTTAGTGG-TCGGTTTAGT
1 GGGGTGATGGAGGTAGTGGAT-AGTTTAGT
35950561 GGGGTG
1 GGGGTG
35950567 TTTAATTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.17, C:0.02, G:0.50, T:0.31
Consensus pattern (29 bp):
GGGGTGATGGAGGTAGTGGATAGTTTAGT
Found at i:35951034 original size:85 final size:85
Alignment explanation
Indices: 35950812--35951107 Score: 479
Period size: 85 Copynumber: 3.5 Consensus size: 85
35950802 TAAGATTTGT
*
35950812 AATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGC-TCTACCACTG
1 AATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTTC-GCCACTG
*
35950876 CTCGGCGAGCCC-GAGTCTGTA
65 CTCGGCGAGCCCAGA-TCTATA
*
35950897 AACTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGCCTTTGACCTGCTTCGCCACTG
1 AA-TTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTTCGCCACTG
35950962 CTCGGCGAGCCCAGATCTATA
65 CTCGGCGAGCCCAGATCTATA
* * * *
35950983 AATTTTAGCTTGTTTCCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTCCGCCACTGC
1 AATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTTCGCCACTGC
*
35951048 TTGGCGAGCCCAGATCTATA
66 TCGGCGAGCCCAGATCTATA
35951068 AATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
1 AATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
35951108 TGTATCTTTG
Statistics
Matches: 197, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
85 117 0.59
86 76 0.39
87 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (85 bp):
AATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTTCGCCACTGC
TCGGCGAGCCCAGATCTATA
Found at i:35951180 original size:87 final size:87
Alignment explanation
Indices: 35951078--35951278 Score: 294
Period size: 87 Copynumber: 2.3 Consensus size: 87
35951068 AATTTTAGCC
* * **
35951078 TGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCACTATTACTTAGGGAG
1 TGTTACCCTATTGCTTAGGGCGTTAAAACGTGTATCTTTGATCTGCTCCACTATTACTTAGGGAG
35951143 ATAAGATCTATAATCTGCAGCT
66 ATAAGATCTATAATCTGCAGCT
* * *
35951165 TGTTACCTTATTGCTTAGGGCGTTAAAATGTGTATCTTTGATCTGCTCCACTATTGCTTAGGGAG
1 TGTTACCCTATTGCTTAGGGCGTTAAAACGTGTATCTTTGATCTGCTCCACTATTACTTAGGGAG
* **
35951230 ATAAGATCTGTAATCTTTAGCT
66 ATAAGATCTATAATCTGCAGCT
* *
35951252 TGTTACCCTATTGCTTAGAGAGTTAAA
1 TGTTACCCTATTGCTTAGGGCGTTAAA
35951279 GCCTGCAATC
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 101 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (87 bp):
TGTTACCCTATTGCTTAGGGCGTTAAAACGTGTATCTTTGATCTGCTCCACTATTACTTAGGGAG
ATAAGATCTATAATCTGCAGCT
Found at i:35951264 original size:44 final size:44
Alignment explanation
Indices: 35951078--35951402 Score: 174
Period size: 44 Copynumber: 7.5 Consensus size: 44
35951068 AATTTTAGCC
* * * *
35951078 TGTTACCCTACTGCTTAGGGGGTTAAG-GCGTGT-ATCTTT-GAT
1 TGTTACCCTATTGCTTAGGGAGATAAGATC-TGTAATCTTTAGAT
* * * ** *
35951120 CTGCT-CCACTATTACTTAGGGAGATAAGATCTATAATCTGCAGCT
1 -TGTTACC-CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGAT
* * * * *
35951165 TGTTACCTTATTGCTTAGGGCGTTAAAATGTGT-ATCTTT-GAT
1 TGTTACCCTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGAT
* *
35951207 CTGCT-CCACTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCT
1 -TGTTACC-CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGAT
* * * *
35951252 TGTTACCCTATTGCTTAGAGAGTTAA-AGCCTGCAATC--TA-AT
1 TGTTACCCTATTGCTTAGGGAGATAAGA-TCTGTAATCTTTAGAT
* * * * * * *
35951293 TGTTACCCTTTTGCTTAGGGAGTTAA-AGCCTGCAGT-TCTCGAT
1 TGTTACCCTATTGCTTAGGGAGATAAGA-TCTGTAATCTTTAGAT
* * * * *
35951336 CT-ATCCCACTATTTCTTAGGGAGATAAGATCTGTAATTTTTAGCT
1 -TGTTACC-CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGAT
35951381 TGTTACCCTATTGCTTAGGGAG
1 TGTTACCCTATTGCTTAGGGAG
35951403 TTAAAGCCGG
Statistics
Matches: 211, Mismatches: 52, Indels: 37
0.70 0.17 0.12
Matches are distributed among these distances:
41 34 0.16
42 9 0.04
43 55 0.26
44 97 0.46
45 16 0.08
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.37
Consensus pattern (44 bp):
TGTTACCCTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGAT
Found at i:35959190 original size:21 final size:21
Alignment explanation
Indices: 35959150--35959190 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35959140 GCTGGCTCAT
*
35959150 CATGTTGTTCTGTGACTCCAC
1 CATGTTGTTCTGGGACTCCAC
* *
35959171 CATGTTTTTCTGGGATTCCA
1 CATGTTGTTCTGGGACTCCA
35959191 ACATTTGATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAC
Found at i:35963050 original size:125 final size:125
Alignment explanation
Indices: 35962691--35963059 Score: 621
Period size: 126 Copynumber: 2.9 Consensus size: 125
35962681 GTTTTAGCCT
* * *
35962691 TAAGAGGATATTCGAATATTCAAAACCAACAAAGAAAGCGAAACTCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCG-AACCCAGTACGTTAGGGCACGATT
* * *
35962756 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTTAGAATGAACTGG
65 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* * *
35962817 TAAAAGGATATTCGAATATTCAAGACAAACAAAGAAAGCAAAACCTAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGC-GAACCCAGTACGTTAGGGCACGATT
*
35962882 CTTCGAATGCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
65 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
*
35962943 TAAGAGGATATTCAAATATTCAAGACAAACAAAGAAAGCGAACCCAGTACGTTAGGGCACGATTC
1 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAACCCAGTACGTTAGGGCACGATTC
35963008 TTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 TTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
35963060 ATGATCAATG
Statistics
Matches: 227, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
125 75 0.33
126 152 0.67
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (125 bp):
TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAACCCAGTACGTTAGGGCACGATTC
TTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:35963220 original size:21 final size:21
Alignment explanation
Indices: 35963190--35963229 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
35963180 AATAGTAATT
*
35963190 AATAGAAATAATTAATAAAAC
1 AATAGAAATAATAAATAAAAC
*
35963211 AATAGTAATAATAAATAAA
1 AATAGAAATAATAAATAAA
35963230 TAATGTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (21 bp):
AATAGAAATAATAAATAAAAC
Found at i:35963308 original size:21 final size:21
Alignment explanation
Indices: 35963270--35963311 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
35963260 TAATAATATT
*
35963270 AAAAACATGATGATAATAACA
1 AAAAACATGATGACAATAACA
* *
35963291 AAAAATATGTTGACAATAACA
1 AAAAACATGATGACAATAACA
35963312 TTAAATATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.21
Consensus pattern (21 bp):
AAAAACATGATGACAATAACA
Found at i:35963538 original size:14 final size:14
Alignment explanation
Indices: 35963497--35963549 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
35963487 CTACGCTTAA
35963497 AAATATAT-AT-AT
1 AAATATATAATAAT
* *
35963509 ATATATTTACATAAT
1 AAATATATA-ATAAT
35963524 AAATATATAATAAT
1 AAATATATAATAAT
*
35963538 AAATAAATAATA
1 AAATATATAATA
35963550 TAATAATATG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 6 0.18
14 18 0.55
15 9 0.27
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATATATAATAAT
Found at i:35963550 original size:19 final size:18
Alignment explanation
Indices: 35963521--35963557 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
35963511 ATATTTACAT
35963521 AATAAATATATAATAATA
1 AATAAATATATAATAATA
35963539 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
35963558 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:35963632 original size:60 final size:60
Alignment explanation
Indices: 35963532--35963663 Score: 162
Period size: 60 Copynumber: 2.2 Consensus size: 60
35963522 ATAAATATAT
* *
35963532 AATAATAAATAAATAATATAATAATATGAAACATAACTCAAATTAATTAAATTAATAG-AA
1 AATAATAAA-AAATAATATAAAAATATGAAACATAACTCAAATTAATTAAATTAACAGTAA
* *
35963592 AATAATAAAAAA-AATATAAAAATAATGAGA-ATAAAGCTCAAATTAATTAATTTAACAGTAA
1 AATAATAAAAAATAATATAAAAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAACAGTAA
*
35963653 AATAACAAAAA
1 AATAATAAAAA
35963664 TAAAAAATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
58 12 0.19
59 10 0.16
60 29 0.46
61 12 0.19
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (60 bp):
AATAATAAAAAATAATATAAAAATATGAAACATAACTCAAATTAATTAAATTAACAGTAA
Found at i:35963970 original size:18 final size:18
Alignment explanation
Indices: 35963947--35963982 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35963937 ATAAAAAGTA
*
35963947 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
35963965 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
35963983 ATGGTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.58, T:0.25
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:35963998 original size:29 final size:30
Alignment explanation
Indices: 35963958--35964057 Score: 96
Period size: 36 Copynumber: 3.2 Consensus size: 30
35963948 GGTGATGGAG
*
35963958 TTAGTGGGGGTGATGGAGGTAGTGGATGGT
1 TTAGTAGGGGTGATGGAGGTAGTGGATGGT
*
35963988 TTAGTAGGGTGTGGGGGTGATGAGGTAGTGGATGGT
1 TTAGTAGGG-GT---GATG--GAGGTAGTGGATGGT
*
35964024 TTAGTA-GGGTGATGGAGTTAGTGG-TCGGT
1 TTAGTAGGGGTGATGGAGGTAGTGGAT-GGT
35964053 TTAGT
1 TTAGT
35964058 GGGATGTTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
28 1 0.02
29 17 0.29
30 8 0.14
31 5 0.08
34 5 0.08
35 2 0.03
36 21 0.36
ACGTcount: A:0.17, C:0.01, G:0.49, T:0.33
Consensus pattern (30 bp):
TTAGTAGGGGTGATGGAGGTAGTGGATGGT
Found at i:35964020 original size:36 final size:37
Alignment explanation
Indices: 35963961--35964034 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
35963951 GATGGAGTTA
35963961 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
35963998 GTGGGGGTGAT-GAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
35964034 G
1 G
35964035 ATGGAGTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 26 0.70
37 11 0.30
ACGTcount: A:0.16, C:0.00, G:0.54, T:0.30
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
Found at i:35965142 original size:23 final size:23
Alignment explanation
Indices: 35965112--35965164 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
35965102 ACAAGCATAG
35965112 AAACATATCATAGACTTTATGAT
1 AAACATATCATAGACTTTATGAT
35965135 AAACATATCATAGACTTTATGAT
1 AAACATATCATAGACTTTATGAT
*
35965158 AATCATA
1 AAACATA
35965165 AAATAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (23 bp):
AAACATATCATAGACTTTATGAT
Found at i:35967166 original size:40 final size:40
Alignment explanation
Indices: 35967122--35967223 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
35967112 GTGCGATTCA
*
35967122 AAATAGCTTCGGCTATAAAT-A-GCACTAAGTGTGCAAAATG
1 AAATAGCTTCAGCTAT--ATGAGGCACTAAGTGTGCAAAATG
* *
35967162 AAATAGTTTCAGCTATATGAGGCACTAAGTGTGCAATACTG
1 AAATAGCTTCAGCTATATGAGGCACTAAGTGTGCAA-AATG
** *
35967203 AGGTAGCTTCAGCTATTTGAG
1 AAATAGCTTCAGCTATATGAG
35967224 ATAGCACTGA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 29 0.56
41 20 0.38
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (40 bp):
AAATAGCTTCAGCTATATGAGGCACTAAGTGTGCAAAATG
Found at i:35974755 original size:51 final size:52
Alignment explanation
Indices: 35974678--35974811 Score: 202
Period size: 51 Copynumber: 2.6 Consensus size: 52
35974668 CGGATACCGG
* *
35974678 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTATCTTT-TTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTATCTTTCTTCACAAA
* *
35974729 GTGGCCTTCACATAGTACCACACTTGT-GACCAAAGCTATCTTTCTTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTAG-TCAAAGCTATCTTTCTTCACAAA
35974781 GTGGCCTTCACATAGTACCACACTTG-AGTCA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCA
35974812 TTAGTGACAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
50 1 0.01
51 40 0.53
52 34 0.45
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTATCTTTCTTCACAAA
Found at i:35976042 original size:21 final size:20
Alignment explanation
Indices: 35976018--35976082 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 20
35976008 CTAGGAATTA
35976018 TGTGATTTGAACTCATTGAGT
1 TGTGATTTGAACTCA-TGAGT
** *
35976039 TGTGATTTGAGTTCATGATTT
1 TGTGATTTGAACTCATGA-GT
*
35976060 ATGTGATTTGACCTCATGAGT
1 -TGTGATTTGAACTCATGAGT
35976081 TG
1 TG
35976083 GAATTGAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
20 5 0.14
21 15 0.42
22 16 0.44
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.45
Consensus pattern (20 bp):
TGTGATTTGAACTCATGAGT
Found at i:35976067 original size:22 final size:21
Alignment explanation
Indices: 35976038--35976099 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 21
35976028 ACTCATTGAG
35976038 TTGTGATTTGAGTTCATGATT
1 TTGTGATTTGAGTTCATGATT
** *
35976059 TATGTGATTTGACCTCATGA-G
1 T-TGTGATTTGAGTTCATGATT
*
35976080 TTG-GAATTGAGTTCATGATT
1 TTGTGATTTGAGTTCATGATT
35976100 ATGACACACA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
19 12 0.38
20 2 0.06
21 2 0.06
22 16 0.50
ACGTcount: A:0.23, C:0.08, G:0.24, T:0.45
Consensus pattern (21 bp):
TTGTGATTTGAGTTCATGATT
Found at i:35976076 original size:43 final size:41
Alignment explanation
Indices: 35976015--35976099 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 41
35976005 TCACTAGGAA
*
35976015 TTATGTGATTTGAACTCATTGAGTTGTGATTTGAGTTCATGAT
1 TTATGTGATTTGAACTCA-TGAGTTG-GAATTGAGTTCATGAT
*
35976058 TTATGTGATTTGACCTCATGAGTTGGAATTGAGTTCATGAT
1 TTATGTGATTTGAACTCATGAGTTGGAATTGAGTTCATGAT
35976099 T
1 T
35976100 ATGACACACA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 16 0.40
42 7 0.17
43 17 0.43
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.45
Consensus pattern (41 bp):
TTATGTGATTTGAACTCATGAGTTGGAATTGAGTTCATGAT
Found at i:35978536 original size:41 final size:40
Alignment explanation
Indices: 35978458--35978576 Score: 102
Period size: 41 Copynumber: 2.9 Consensus size: 40
35978448 CCTGGCCAGG
* * *
35978458 CCATGTGGCCCACAAG-GCTGGCACACAACCT-CACACAC-A
1 CCATGTGACCCACATGAGCTGACACAC-ACCTAC-CACACGA
35978497 TCCATGTGACCCACATGAGCTGACACACGACCTACCACACGA
1 -CCATGTGACCCACATGAGCTGACACAC-ACCTACCACACGA
* * *
35978539 CTATGTGACCTACAT-AGGCTGTCACACAGCCTACCACA
1 CCATGTGACCCACATGA-GCTGACACACA-CCTACCACA
35978577 TGGCCGTATG
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
40 16 0.24
41 49 0.73
42 2 0.03
ACGTcount: A:0.30, C:0.38, G:0.17, T:0.15
Consensus pattern (40 bp):
CCATGTGACCCACATGAGCTGACACACACCTACCACACGA
Found at i:35987926 original size:367 final size:364
Alignment explanation
Indices: 35987201--35987928 Score: 935
Period size: 367 Copynumber: 2.0 Consensus size: 364
35987191 GTCTTGGCCA
* * * * * **
35987201 TGTGACCCTAATTGTATTGATGATGTCATAAACAGAGAGTTACACGGGTTGAGGACACGAGCATG
1 TGTGACCCTAATTATATTAATGACGTCATAAACAGAGAGTTACACGGGCTAAACACACGAGCATG
* * * *
35987266 TCCCAAGCCACACGGGCATGTGTGACCACACGGCCTGCCTATACGAGCGTGTGACCTTGTTTCAT
66 TCCCAAGCCACACGGGCATGTGTGACCACACGGCCTACCTACACGAGCATGTGACCCTGTTTCAT
* * * *
35987331 GAAAATTTTTTAAGTTTTCCCAAAGTTTTCTAAAGTTCTCGGTTTAGTCCCGAACAACACCCAAT
131 GAAAATTTTCTAAGTGTTCCCAAAGTTTTCTAAAGTTCTCGGATCAGTCCCGAACAACACCCAAT
* ** * *
35987396 GTATGTTTTGGGCCTCGTAGGCCCATATAAGGGACAATTTGCATATGCGTGAATGGATTTAATTG
196 GTATGTTTTGAGCCTCGTAGGCCCATATAAGGGACAATTTGCATATGAATGAATGAATTCAATTG
** * *
35987461 GAACAAAGTTTTTATGGCCTGGTTTTGTATGTTTCTTGTGATTAAGTCAGGTAATGCCTTATATC
261 GAACAAAG-TTTTATGGCCCAGTTTTGTATGTTGCTTGTGATTAAGTCAGGTAATGCCTCATATC
35987526 ATGTCCTGGCATCGAGCACGGGTAAGGGGTGTTACAAGCCG
325 ATGTCCTGGCA-CGAGCACGGGTAAGGGGTGTTACAAGCCG
* * * * *
35987567 TGTGACCCTAATTATGTTAATGACGTCATAAACAGAGAGTTACATGGGCTAAACACCCGGGCGTG
1 TGTGACCCTAATTATATTAATGACGTCATAAACAGAGAGTTACACGGGCTAAACACACGAGCATG
* * * *
35987632 TCCCAAGCCACATGGGCGTGTGTGACCACACGGCGTAACC-GCACGAGCATGTGACCCTGTTTCA
66 TCCCAAGCCACACGGGCATGTGTGACCACACGGCCT-ACCTACACGAGCATGTGACCCTGTTTCA
* ** *
35987696 TGAAAATTTCTCTAAGTGTTCCCAAAGTTTTCTAAAGTTCTCGGATCAGTCCCGAACTATTCCCG
130 TGAAAATTT-TCTAAGTGTTCCCAAAGTTTTCTAAAGTTCTCGGATCAGTCCCGAACAACACCCA
*
35987761 ATGTGTGTTTTGAGCCTCGTAGGCCCATATAAGGGACAATTTGCATATGAATGAATGAATTCAAT
194 ATGTATGTTTTGAGCCTCGTAGGCCCATATAAGGGACAATTTGCATATGAATGAATGAATTCAAT
* * * *
35987826 TTGAATGAAA-TTTTATGGCCCAGTTTTGTATGTCTGCTTGTG-TATAAGTCCGGTAATGCCTCG
259 TGGAA-CAAAGTTTTATGGCCCAGTTTTGTATGT-TGCTTGTGAT-TAAGTCAGGTAATGCCTCA
* *
35987889 TATCCTGTCTCGATGTCA-GA-CACGGGTAAGGGGTGTTACA
321 TATCATGTC-C--TGGCACGAGCACGGGTAAGGGGTGTTACA
35987929 CTTAGTGGTA
Statistics
Matches: 310, Mismatches: 44, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
366 137 0.44
367 163 0.53
368 6 0.02
370 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (364 bp):
TGTGACCCTAATTATATTAATGACGTCATAAACAGAGAGTTACACGGGCTAAACACACGAGCATG
TCCCAAGCCACACGGGCATGTGTGACCACACGGCCTACCTACACGAGCATGTGACCCTGTTTCAT
GAAAATTTTCTAAGTGTTCCCAAAGTTTTCTAAAGTTCTCGGATCAGTCCCGAACAACACCCAAT
GTATGTTTTGAGCCTCGTAGGCCCATATAAGGGACAATTTGCATATGAATGAATGAATTCAATTG
GAACAAAGTTTTATGGCCCAGTTTTGTATGTTGCTTGTGATTAAGTCAGGTAATGCCTCATATCA
TGTCCTGGCACGAGCACGGGTAAGGGGTGTTACAAGCCG
Found at i:35998979 original size:10 final size:10
Alignment explanation
Indices: 35998964--35998997 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
35998954 TCGATTATTC
35998964 ATCTTATTTT
1 ATCTTATTTT
35998974 ATCTTATTTT
1 ATCTTATTTT
*
35998984 ATTTTATTTT
1 ATCTTATTTT
35998994 -TCTT
1 ATCTT
35998998 TTATTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 3 0.14
10 19 0.86
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (10 bp):
ATCTTATTTT
Found at i:36004649 original size:179 final size:180
Alignment explanation
Indices: 36004313--36004670 Score: 454
Period size: 179 Copynumber: 2.0 Consensus size: 180
36004303 GAGCTACAAA
* * * *
36004313 ACTCCAAATTAAGATCTGTTAATTTTCACAGAAACTATACTCACATATATTCTTACCATAATATT
1 ACTCCAAATTAAGAACCGCTAATTTTCACAGAAACTAGACTCACATATATTCTTACCATAATATT
* * * * *
36004378 TTCATAATTTTTTGTTTAGCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGCC
66 TTAAGAATATTTGGTTTACCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGCC
* *
36004443 CAACAGTTCTGACCTCTCTTCACTAAAATTTATTTATCTCATGGTACAGG
131 CAACAGTTCCGACCTCTCTTCACTAAAAATTATTTATCTCATGGTACAGG
* * **
36004493 ACTCCAAATTAAGAACCGCTAATTTTC-CAAGAAACTGGACTTACATATATTCTTATTATAA-AT
1 ACTCCAAATTAAGAACCGCTAATTTTCAC-AGAAACTAGACTCACATATATTCTTACCATAATAT
* * *
36004556 TTTAAGAATATTTGGTTTACCCTATTAGTATAGTTTATTCATTAAA-TATTCCCCTATTTCACT-
65 TTTAAGAATATTTGGTTTACCCAATTAGTACAGTTTATTCATTAAAGT-TACCCCTATTTCACTG
* * * * *
36004619 CTCCGATAGTTCCGATCTTTCTTCACTAAAAATTATTTGTCTCATGGTACAG
129 C-CCAACAGTTCCGACCTCTCTTCACTAAAAATTATTTATCTCATGGTACAG
36004671 ATCTCGGATG
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
178 2 0.01
179 99 0.65
180 51 0.34
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (180 bp):
ACTCCAAATTAAGAACCGCTAATTTTCACAGAAACTAGACTCACATATATTCTTACCATAATATT
TTAAGAATATTTGGTTTACCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGCC
CAACAGTTCCGACCTCTCTTCACTAAAAATTATTTATCTCATGGTACAGG
Found at i:36005280 original size:50 final size:50
Alignment explanation
Indices: 36005226--36005666 Score: 422
Period size: 50 Copynumber: 8.7 Consensus size: 50
36005216 ACCGAAGCTC
* * * * *
36005226 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCTCTCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
36005276 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACTCACGTGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
36005326 TCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
36005378 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
36005427 TCTGGTACACGTAGGAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * ** * *
36005477 TTTGATACACGTAGTATG-CTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACATAGTA-GCCTGCACTTAGTACTACACACGTGA-CCTATCAA
* * * * * *
36005528 TCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* *
36005578 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACGCGTGACCTA--AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * *
36005626 ACTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACACA
36005667 TGTGTTCTCA
Statistics
Matches: 320, Mismatches: 61, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
48 5 0.02
49 3 0.01
50 205 0.64
51 77 0.24
52 30 0.09
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:36005430 original size:101 final size:100
Alignment explanation
Indices: 36005226--36005666 Score: 367
Period size: 101 Copynumber: 4.4 Consensus size: 100
36005216 ACCGAAGCTC
* * * * *
36005226 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCTCTCAATCTGGTACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACTCAATCGGGTACACATAGT
* * * *
36005291 AGCCTGCACTTAGTACTACTCACGTGACTTATCCA
66 AGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * * *
36005326 TCTGATACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATC--ACTCAATCGGGTACACATA
*
36005390 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
64 GTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * * * ** * *
36005427 TCTGGTACACGTAGGAGCCTGCACTTAGTACTACACACGTGA-C-CTAACCATTTGATACACGTA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACT--CAATCGGGTACACATA
* ** * *
36005490 GTATG-CTGCACTTAGTACTACACACGTGATCGAAACTA
64 GTA-GCCTGCACTTAGTACTACACACGCGA-CCTATCAA
* * * * * *
36005528 TCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-C-CTAACAATCTGGTACACGTA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACT--CAATCGGGTACACATA
* *
36005591 GTAGCCTGCACTTAGTACTACACGCGTGACCTA--AA
64 GTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * * *
36005626 ACTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 TCTG--GT--ACGCATAGTAGCCTGCACTTAGTACTACACA
36005667 TGTGTTCTCA
Statistics
Matches: 277, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
97 1 0.00
98 3 0.01
99 1 0.00
100 78 0.28
101 163 0.59
102 31 0.11
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACTCAATCGGGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGACCTATCAA
Found at i:36005492 original size:151 final size:151
Alignment explanation
Indices: 36005229--36005666 Score: 655
Period size: 151 Copynumber: 2.9 Consensus size: 151
36005219 GAAGCTCTCT
* *
36005229 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCTCTCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
36005294 CTGCACTTAGTACTACTCACGTGACTTATCCATCTGATACGCATAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACATAGTAGCCTGCACTTAGTACTA
**
36005359 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAACTAACG
*
36005380 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGGAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
36005445 CTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTATG-CTGCACTTAGTACT
66 CTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACATAGTA-GCCTGCACTTAGTACT
*
36005509 ACACACGTGATCGAAACTATCG
130 ACACACGTGATCGAAACTAACG
* *
36005531 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
36005596 CTGCACTTAGTACTACACGCGTGACCTAA-AACTGTCTTAAACACATAGTAGCCTGCACATAGTA
66 CTGCACTTAGTACTACACACGTGACCTAACCA-T-T-TGATACACATAGTAGCCTGCACTTAGTA
36005660 CTACACA
128 CTACACA
36005667 TGTGTTCTCA
Statistics
Matches: 261, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
150 1 0.00
151 228 0.87
152 3 0.01
153 29 0.11
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACATAGTAGCCTGCACTTAGTACTA
CACACGTGATCGAAACTAACG
Found at i:36013773 original size:30 final size:28
Alignment explanation
Indices: 36013739--36013812 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 28
36013729 TGTGATATGG
36013739 TATCTTGGATTTCTGTACCTTGGATATCTT
1 TATCTTGGATTTCTGT--CTTGGATATCTT
* *
36013769 TATCTTGGATCCCTCTGTCTTGGATTTCTT
1 TATCTTGGAT--TTCTGTCTTGGATATCTT
36013799 TAT-TCTGGATTTCT
1 TATCT-TGGATTTCT
36013813 TGTTATCTCC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 3 0.08
29 1 0.03
30 29 0.76
32 5 0.13
ACGTcount: A:0.14, C:0.19, G:0.16, T:0.51
Consensus pattern (28 bp):
TATCTTGGATTTCTGTCTTGGATATCTT
Found at i:36023271 original size:27 final size:26
Alignment explanation
Indices: 36023229--36023280 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
36023219 GCGAGGCTGC
*
36023229 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
36023255 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36023281 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36029503 original size:23 final size:24
Alignment explanation
Indices: 36029477--36029580 Score: 128
Period size: 23 Copynumber: 4.5 Consensus size: 24
36029467 CAGCCCATTG
36029477 GAGCTTACCGTTTCAGCTCGTAT-
1 GAGCTTACCGTTTCAGCTCGTATA
*
36029500 GAGCTTACTG-TTCAGCTCG-ATA
1 GAGCTTACCGTTTCAGCTCGTATA
* *
36029522 GAGCTTACCATTTCAGCTCAT-TA
1 GAGCTTACCGTTTCAGCTCGTATA
*
36029545 GAGCTTACCGTTTCAGCTC-AATA
1 GAGCTTACCGTTTCAGCTCGTATA
*
36029568 GAGCTTACTGTTT
1 GAGCTTACCGTTT
36029581 ATCAACTCAG
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 51 0.73
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (24 bp):
GAGCTTACCGTTTCAGCTCGTATA
Found at i:36029530 original size:45 final size:46
Alignment explanation
Indices: 36029477--36029580 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 46
36029467 CAGCCCATTG
* * *
36029477 GAGCTTACCGTTTCAGCTC-GTATGAGCTTACTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTCATTA-GAGCTTACCGTTTCAGCTCAATA
*
36029522 GAGCTTACCATTTCAGCTCATTAGAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCATTAGAGCTTACCGTTTCAGCTCAATA
*
36029568 GAGCTTACTGTTT
1 GAGCTTACCGTTT
36029581 ATCAACTCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
45 27 0.53
46 24 0.47
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (46 bp):
GAGCTTACCGTTTCAGCTCATTAGAGCTTACCGTTTCAGCTCAATA
Found at i:36032588 original size:40 final size:39
Alignment explanation
Indices: 36032506--36032688 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 39
36032496 GAATGATGTT
* * * *
36032506 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATC
* * *
36032546 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATC
*
36032586 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
* * *
36032625 CGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTCTAAT-
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT-AAATC
* *
36032665 CGGGCTATGTCCCAAAGGCATTTG
1 CGGGCTAAGT-CCGAAGGCATTTG
36032689 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:36032669 original size:79 final size:80
Alignment explanation
Indices: 36032504--36032688 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
36032494 TTGAATGATG
*
36032504 TTCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TTCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36032568 TGTGCGAGATACTAA
66 TGTGCGAGATACTAA
* * * **
36032583 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TT-CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
36032645 TTTGTGTGAGTTACTCTAA
64 TTTGTGCGAGATA--CTAA
* *
36032664 -TCGGGCTATGTCCCAAAGGCATTTG
1 TTCGGGCTAAGTCCCGAAGGCATTTG
36032689 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 30 0.33
81 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
TTCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTAA
Found at i:36032710 original size:79 final size:79
Alignment explanation
Indices: 36032557--36032721 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
36032547 GGACTAAGAT
* **
36032557 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
36032622 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
36032636 CCGAAGGCATTTGTGTGAGTTACTCTAA-T-CGGGCTATGTCCCAAAGGCATTTGAACGAG-TAG
1 CCGAAGGCATTTGTGCGAGATA--CTAATTCCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-
* *
36032698 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
36032715 CCGAAGG
1 CCGAAGG
36032722 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
79 44 0.60
80 25 0.34
81 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36039994 original size:29 final size:28
Alignment explanation
Indices: 36039949--36040007 Score: 109
Period size: 29 Copynumber: 2.1 Consensus size: 28
36039939 CCACTTGGGT
36039949 CGAGTATGGGCCTTAGGCCCATTTGCAC
1 CGAGTATGGGCCTTAGGCCCATTTGCAC
36039977 CGAGTAATGGGCCTTAGGCCCATTTGCAC
1 CGAGT-ATGGGCCTTAGGCCCATTTGCAC
36040006 CG
1 CG
36040008 TTATGTCTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (28 bp):
CGAGTATGGGCCTTAGGCCCATTTGCAC
Found at i:36040141 original size:27 final size:27
Alignment explanation
Indices: 36040084--36040142 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
36040074 TTCAGTTTGT
* *
36040084 AAAATTACCGAAATACCTCTAGTTTGT
1 AAAATTACCGAAATACCTCTAGTGTGC
* *
36040111 AAAATTACTGAAATACC-CTTGTAGTGC
1 AAAATTACCGAAATACCTCTAGT-GTGC
36040138 AAAAT
1 AAAAT
36040143 GACCATAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.31
Consensus pattern (27 bp):
AAAATTACCGAAATACCTCTAGTGTGC
Found at i:36040187 original size:27 final size:27
Alignment explanation
Indices: 36040122--36040199 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
36040112 AAATTACTGA
*
36040122 AATACCCTTGT-AGTGCAAAATGACCAT
1 AATACCCTTGTAAG-GTAAAATGACCAT
* * *
36040149 AATGCCCCTGTAAGGTAAAATGACCGT
1 AATACCCTTGTAAGGTAAAATGACCAT
* * *
36040176 ATTACCCTTGTATGGTAGAATGAC
1 AATACCCTTGTAAGGTAAAATGAC
36040200 GATTATGCCC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 39 0.95
28 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (27 bp):
AATACCCTTGTAAGGTAAAATGACCAT
Found at i:36040210 original size:27 final size:27
Alignment explanation
Indices: 36040138--36040211 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
36040128 CTTGTAGTGC
* * *
36040138 AAAATGACCATAATGCCCCTGTAAGGT
1 AAAATGACGATTATGCCCTTGTAAGGT
*
36040165 AAAATGACCGTATTA--CCCTTGTATGGT
1 AAAATGA-CG-ATTATGCCCTTGTAAGGT
*
36040192 AGAATGACGATTATGCCCTT
1 AAAATGACGATTATGCCCTT
36040212 ATGTTTCATA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
25 4 0.11
26 2 0.05
27 28 0.74
28 1 0.03
29 3 0.08
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (27 bp):
AAAATGACGATTATGCCCTTGTAAGGT
Found at i:36040468 original size:22 final size:22
Alignment explanation
Indices: 36040433--36040475 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36040423 CTACTATATT
*
36040433 TACGGCCTTTAGCCGTTCTGTC
1 TACGGCCTTGAGCCGTTCTGTC
*
36040455 TACGGCGTTGAGCCGTTCTGT
1 TACGGCCTTGAGCCGTTCTGT
36040476 TGACTTAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.28, G:0.28, T:0.35
Consensus pattern (22 bp):
TACGGCCTTGAGCCGTTCTGTC
Found at i:36040650 original size:27 final size:28
Alignment explanation
Indices: 36040619--36040672 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
36040609 TCTGATACTG
* *
36040619 ATTCTG-TATTGGGCTTAGGCCTACCTA
1 ATTCTGTTATTGGGCTAAGGCCCACCTA
36040646 ATTCTGTTATTGGGCTAAGGCCCACCT
1 ATTCTGTTATTGGGCTAAGGCCCACCT
36040673 GATACTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (28 bp):
ATTCTGTTATTGGGCTAAGGCCCACCTA
Found at i:36041309 original size:7 final size:7
Alignment explanation
Indices: 36041299--36041331 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
36041289 TTTTAAAGCG
36041299 GTTAAAT
1 GTTAAAT
36041306 GTTAAAT
1 GTTAAAT
36041313 GTTAAAT
1 GTTAAAT
36041320 GTTAAATT
1 GTTAAA-T
36041328 GTTA
1 GTTA
36041332 TACATAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (7 bp):
GTTAAAT
Found at i:36049506 original size:18 final size:17
Alignment explanation
Indices: 36049479--36049514 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
36049469 TCATTTCTTC
36049479 AAAAAAGAAAAAAAGAA
1 AAAAAAGAAAAAAAGAA
*
36049496 AAAAAAGGAAACAAAGAA
1 AAAAAA-GAAAAAAAGAA
36049514 A
1 A
36049515 GCTTCATCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAAAGAA
Found at i:36052663 original size:18 final size:18
Alignment explanation
Indices: 36052642--36052703 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 18
36052632 AGATTGTAGT
36052642 AATGATAAATATAAAAAA
1 AATGATAAATATAAAAAA
* *
36052660 AATGAT-AA-AGAACAAA
1 AATGATAAATATAAAAAA
* *
36052676 GATGAGAAAATATAAAATAA
1 AATGA-TAAATATAAAA-AA
36052696 AATGATAA
1 AATGATAA
36052704 TTTTTATTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 7
0.68 0.17 0.15
Matches are distributed among these distances:
16 10 0.31
17 2 0.06
18 8 0.25
19 6 0.19
20 6 0.19
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.19
Consensus pattern (18 bp):
AATGATAAATATAAAAAA
Found at i:36061433 original size:42 final size:42
Alignment explanation
Indices: 36061278--36061439 Score: 168
Period size: 42 Copynumber: 3.8 Consensus size: 42
36061268 TATCATACCA
* * * * *
36061278 ATGCCATATCCTACATATGGTTTTACATG-GGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* * * *
36061320 ATG-CAAATTGCCCAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCCATA-T-CCCAGATATGGTCTTACACGAAGTCTCATATCG
36061363 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATA-CTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATC-G
* *
36061405 ATGCCATATCCTAGATATGGTCTTACACGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCT
36061440 TAGAAACCCT
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 4 0.04
42 65 0.65
43 28 0.28
44 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:36068039 original size:49 final size:49
Alignment explanation
Indices: 36067970--36068403 Score: 674
Period size: 49 Copynumber: 9.1 Consensus size: 49
36067960 GAAATGATAG
36067970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36068019 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * *
36068068 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGGATATATA--TAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36068115 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36068162 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36068209 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36068258 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36068305 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
36068354 CAGGGCCGAGTGGCCAACGTGATGGATGTG-AAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36068400 TAAG
1 TAAG
36068404 TCCCGAAGGG
Statistics
Matches: 360, Mismatches: 19, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
45 6 0.02
46 8 0.02
47 168 0.47
48 9 0.03
49 169 0.47
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:36068132 original size:47 final size:47
Alignment explanation
Indices: 36067970--36068403 Score: 629
Period size: 47 Copynumber: 9.1 Consensus size: 47
36067960 GAAATGATAG
36067970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGA
*
36068019 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATATATATGA
* * *
36068068 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGGATATATATAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
*
36068115 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
*
36068162 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
36068209 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGA
* *
36068258 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
*
36068305 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
* * * * * * *
36068351 TGACAGGGCCGAGTGGCCAACGTGATGGATGTG-AAGTGTATAAATGTGA
1 T-A-A-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
36068400 TAAG
1 TAAG
36068404 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 22, Indels: 19
0.90 0.06 0.05
Matches are distributed among these distances:
46 2 0.01
47 189 0.53
48 15 0.04
49 143 0.40
51 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
Found at i:36068150 original size:96 final size:96
Alignment explanation
Indices: 36067970--36068403 Score: 676
Period size: 96 Copynumber: 4.5 Consensus size: 96
36067960 GAAATGATAG
36067970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCG
*
36068035 ATGTGATGAATGTGAAAGTGTACATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGA
* * *
36068068 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGGATATATATAATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
36068133 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
36068162 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
36068227 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
36068258 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
*
36068323 GTGATGAATGTGGAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * * *
36068354 CAGGGCCGAGTGGCCAACGTGATGGATGTG-AAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAG
36068404 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 17, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
94 89 0.28
95 19 0.06
96 167 0.53
98 42 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:36068578 original size:37 final size:37
Alignment explanation
Indices: 36068522--36068600 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36068512 CCGAGCTCTA
* * * *
36068522 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
36068559 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
36068596 AAGAC
1 AAGAC
36068601 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:36070514 original size:43 final size:43
Alignment explanation
Indices: 36070466--36070611 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
36070456 TTGGTTTTCA
36070466 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36070509 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
36070552 GCACTAAGTGTGCGGGCAATAAGTGTTCACGATTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
36070595 GCAGTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
36070612 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:36070631 original size:29 final size:29
Alignment explanation
Indices: 36070593--36070666 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36070583 ATTGTGAGAT
* * *
36070593 TGGCAGTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36070622 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
36070651 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36070667 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36071025 original size:40 final size:40
Alignment explanation
Indices: 36070977--36071092 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 40
36070967 TCGAATGATG
*
36070977 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
36071017 TCCGGGCTAAGTTCCAAAGAGCATTCTTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
** * * *
36071057 TCCATGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
36071093 CGTGTATTCG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:36074947 original size:49 final size:49
Alignment explanation
Indices: 36074878--36075455 Score: 914
Period size: 47 Copynumber: 12.1 Consensus size: 49
36074868 GAAATGATAG
36074878 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36074927 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36074976 TAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
36075023 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATA--TAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36075070 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36075117 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36075164 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36075213 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36075260 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36075309 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
36075356 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
36075405 CAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
36075452 TAAG
1 TAAG
36075456 TCCCGAAGGG
Statistics
Matches: 496, Mismatches: 23, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
45 6 0.01
47 265 0.53
48 1 0.00
49 224 0.45
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:36075054 original size:96 final size:95
Alignment explanation
Indices: 36074878--36075455 Score: 926
Period size: 96 Copynumber: 6.0 Consensus size: 95
36074868 GAAATGATAG
36074878 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
36074943 ATGTGATGAATGTGAAAGTGTATATATATGTGA
65 ATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
36074976 TAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGACCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
* *
36075040 TGTGATGAATGTGAAAGTGTATATATATAA
66 TGTGATGAATGTGAAAGTGTATATATGTGA
36075070 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
36075134 TGTGATGAATGTGAAAGTGTATATATGTGA
66 TGTGATGAATGTGAAAGTGTATATATGTGA
* *
36075164 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
36075229 ATGTGATGAATGTGAAAGTGTATATATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
* *
36075260 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
36075325 ATGTGATGAATGTGAAAGTGTATATATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
36075356 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGTCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
* * *
36075421 ACGTGATGGATGTGAAAGTGTATAAATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
36075452 TAAG
1 TAAG
36075456 TCCCGAAGGG
Statistics
Matches: 458, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 134 0.29
96 289 0.63
98 35 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (95 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36075630 original size:37 final size:37
Alignment explanation
Indices: 36075574--36075652 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36075564 CCGAGCTCTA
* * * *
36075574 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
36075611 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
36075648 AAGAC
1 AAGAC
36075653 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:36083277 original size:43 final size:42
Alignment explanation
Indices: 36083217--36083302 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 42
36083207 TAAAGCTATG
36083217 CGTTTTTTCTCAATTCTTTAACGTCTCGAGCTAGAATTCTGA
1 CGTTTTTTCTCAATTCTTTAACGTCTCGAGCTAGAATTCTGA
36083259 CGTTTATTTCTCAATTCTTTAACGTCTCGAGCTAGAATTCTGA
1 CGTTT-TTTCTCAATTCTTTAACGTCTCGAGCTAGAATTCTGA
36083302 C
1 C
36083303 CGGTTCTTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 5 0.12
43 38 0.88
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (42 bp):
CGTTTTTTCTCAATTCTTTAACGTCTCGAGCTAGAATTCTGA
Found at i:36084854 original size:18 final size:18
Alignment explanation
Indices: 36084803--36084928 Score: 77
Period size: 16 Copynumber: 6.9 Consensus size: 18
36084793 TTTTGTATTG
*
36084803 TATAA-AATGTATAAAAA
1 TATAATAATATATAAAAA
*
36084820 AATAGA-AATA-A-AAAAA
1 TATA-ATAATATATAAAAA
36084836 TATAATAATATATAAAAA
1 TATAATAATATATAAAAA
36084854 TA-ATATAATATAT--AAA
1 TATA-ATAATATATAAAAA
*
36084870 TATAAAAATATATAAAATA
1 TATAATAATATATAAAA-A
*
36084889 TTTAGAATATATATATAATAAAA
1 --TATAATA-ATATAT-A-AAAA
*
36084912 TAGATATAATATATAAA
1 TATA-ATAATATATAAA
36084929 TAAATTGAAC
Statistics
Matches: 88, Mismatches: 6, Indels: 28
0.72 0.05 0.23
Matches are distributed among these distances:
15 1 0.01
16 25 0.28
17 7 0.08
18 22 0.25
19 3 0.03
20 1 0.01
21 15 0.17
22 9 0.10
23 2 0.02
24 3 0.03
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
TATAATAATATATAAAAA
Found at i:36084898 original size:34 final size:35
Alignment explanation
Indices: 36084806--36084927 Score: 108
Period size: 34 Copynumber: 3.5 Consensus size: 35
36084796 TGTATTGTAT
* * *
36084806 AAAATGTATAAAA-A-AATAGAAATAAAAAAATATA
1 AAAATATATAAAATATAATAG-AATATATAAATATA
* *
36084840 ATAATATATAAAA-ATAATATAATATATAAATATA
1 AAAATATATAAAATATAATAGAATATATAAATATA
* *
36084874 AAAATATATAAAATAT-TTAGAATATATATATAATA
1 AAAATATATAAAATATAATAGAATATATAAAT-ATA
* *
36084909 AAATAGATATAATATATAA
1 AAA-ATATATAAAATATAA
36084928 ATAAATTGAA
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
34 48 0.68
35 12 0.17
36 11 0.15
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (35 bp):
AAAATATATAAAATATAATAGAATATATAAATATA
Done.