Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 113 of 259
Found at i:36491703 original size:16 final size:16
Alignment explanation
Indices: 36491682--36491714 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36491672 AATGACAGAG
36491682 TATGAGGGAGAATTTT
1 TATGAGGGAGAATTTT
36491698 TATGAGGGAGAATTTT
1 TATGAGGGAGAATTTT
36491714 T
1 T
36491715 CAGGCTCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.39
Consensus pattern (16 bp):
TATGAGGGAGAATTTT
Found at i:36506249 original size:40 final size:40
Alignment explanation
Indices: 36506195--36506387 Score: 271
Period size: 40 Copynumber: 4.8 Consensus size: 40
36506185 GGATATAGCT
*
36506195 ACTCGCCCAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* *
36506235 ACTCGCACAAATGCCTTTGGGACTTAACCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* * *
36506275 ACTCGCACAAATGCCTTCGAGACTTAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* ** *
36506315 ACTCGCACAATTGCCTTCGGGACTTAGCCC-GAAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCA-TAGTA
*
36506355 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
36506388 TATTATCCGA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 133 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
Found at i:36509717 original size:45 final size:45
Alignment explanation
Indices: 36509653--36509743 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
36509643 AATCCGAGAG
* * *
36509653 TAAGTTCATAAATATTATTAGTTAATATTTATGAGTTAAATATGT
1 TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
36509698 TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
1 TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
36509743 T
1 T
36509744 TTTAAAAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (45 bp):
TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
Found at i:36509720 original size:17 final size:17
Alignment explanation
Indices: 36509655--36509724 Score: 62
Period size: 14 Copynumber: 4.5 Consensus size: 17
36509645 TCCGAGAGTA
*
36509655 AGTTCATAAATATTATT
1 AGTTAATAAATATTATT
*
36509672 AGTTAAT--AT-TTATG
1 AGTTAATAAATATTATT
* *
36509686 AGTTAA-ATATGTTA--
1 AGTTAATAAATATTATT
36509700 AGTTAATAAATATTATT
1 AGTTAATAAATATTATT
36509717 AGTTAATA
1 AGTTAATA
36509725 TTTACGAGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
14 16 0.37
15 10 0.23
16 3 0.07
17 14 0.33
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (17 bp):
AGTTAATAAATATTATT
Found at i:36524271 original size:79 final size:81
Alignment explanation
Indices: 36524136--36524319 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
36524126 TGAATGATGT
*
36524136 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
36524200 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
36524216 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
36524278 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
36524295 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36524320 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:36524326 original size:40 final size:40
Alignment explanation
Indices: 36524135--36524319 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
36524125 TTGAATGATG
* * * *
36524135 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36524175 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36524215 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36524254 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36524295 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36524320 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36524341 original size:79 final size:79
Alignment explanation
Indices: 36524188--36524352 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36524178 GGACTAAGAT
* * **
36524188 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36524253 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36524267 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36524330 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36524346 CCGAAGG
1 CCGAAGG
36524353 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36531345 original size:9 final size:9
Alignment explanation
Indices: 36531303--36531386 Score: 55
Period size: 9 Copynumber: 8.9 Consensus size: 9
36531293 TTAATTTTTT
*
36531303 AAATTTTAA
1 AAATTATAA
36531312 AAATTCA-AA
1 AAATT-ATAA
36531321 AATATTATAA
1 AA-ATTATAA
*
36531331 AGATTATAA
1 AAATTATAA
36531340 AAATTATTTAA
1 AAATTA--TAA
*
36531351 ATCATT-TAA
1 A-AATTATAA
*
36531360 AAAGTATAA
1 AAATTATAA
*
36531369 AGATTATAA
1 AAATTATAA
36531378 AAATATATA
1 AAAT-TATA
36531387 TTATTTTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
8 2 0.03
9 39 0.67
10 10 0.17
11 4 0.07
12 3 0.05
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (9 bp):
AAATTATAA
Found at i:36531381 original size:29 final size:29
Alignment explanation
Indices: 36531309--36531383 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
36531299 TTTTAAATTT
* * *
36531309 TAAAAATT-CAAAAATATTATAAAGATTA
1 TAAAAATTATAAAAATATTATAAAAAGTA
**
36531337 TAAAAATTATTTAAATCATT-TAAAAAGTA
1 TAAAAATTATAAAAAT-ATTATAAAAAGTA
*
36531366 TAAAGATTATAAAAATAT
1 TAAAAATTATAAAAATAT
36531384 ATATTATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
28 10 0.27
29 24 0.65
30 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (29 bp):
TAAAAATTATAAAAATATTATAAAAAGTA
Found at i:36531564 original size:3 final size:3
Alignment explanation
Indices: 36531556--36531584 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
36531546 AAAACATGCA
36531556 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36531585 ATGAAAAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:36531736 original size:15 final size:15
Alignment explanation
Indices: 36531718--36531748 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36531708 CAATTTTGTG
36531718 TTAGTTTATTTTTCA
1 TTAGTTTATTTTTCA
36531733 TTAGTTTATTTTTCA
1 TTAGTTTATTTTTCA
36531748 T
1 T
36531749 ATCTTGCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (15 bp):
TTAGTTTATTTTTCA
Found at i:36534762 original size:14 final size:13
Alignment explanation
Indices: 36534730--36534761 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36534720 ATTTCTGGGA
36534730 TTTTTTAGCCGGT
1 TTTTTTAGCCGGT
*
36534743 TTTTTTAGCCTGT
1 TTTTTTAGCCGGT
36534756 TTTTTT
1 TTTTTT
36534762 TTCTGACTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.12, G:0.16, T:0.66
Consensus pattern (13 bp):
TTTTTTAGCCGGT
Found at i:36537341 original size:21 final size:21
Alignment explanation
Indices: 36537308--36537349 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
36537298 TCCAGCAACC
* *
36537308 AAACATTCTCATTCCAGCTCT
1 AAACACTCCCATTCCAGCTCT
36537329 AAACACTCCCATTCCAGCTCT
1 AAACACTCCCATTCCAGCTCT
36537350 TGTCCAGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.38, G:0.05, T:0.29
Consensus pattern (21 bp):
AAACACTCCCATTCCAGCTCT
Found at i:36540797 original size:40 final size:40
Alignment explanation
Indices: 36540742--36541053 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
36540732 GAGAATTGAG
36540742 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
36540782 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
36540822 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
36540862 AGTGCTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
36540902 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
36540942 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
36540982 AGTGATGTTTCCGCGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
36541022 AGTGATATATCCGTGCTAAACCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
36541054 ATCATGCTGG
Statistics
Matches: 256, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:36545178 original size:39 final size:40
Alignment explanation
Indices: 36545079--36545220 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
36545069 AATGATGTCT
* * *
36545079 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAAATCC
*
36545119 GGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAAATCC
*
36545159 GGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTA-AATCC
*
36545198 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
36545221 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 31 0.35
40 48 0.55
41 9 0.10
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAAATCC
Found at i:36545234 original size:40 final size:39
Alignment explanation
Indices: 36545079--36545238 Score: 141
Period size: 40 Copynumber: 4.0 Consensus size: 39
36545069 AATGATGTCT
* *
36545079 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCC
1 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGT-ACTATAATCC
* *
36545119 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-AATCC
1 GGGCTAAG-CCCGAAGGCATTTGTGCGAG-TACTATAATCC
*
36545159 GGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAA-CC
1 GGGCTAAGCCCGAAGGCATTTGTGCG-AGTACTATAATCC
* **
36545198 GGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTAT-ATCC
1 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTA-CTATAATCC
36545238 G
1 G
36545239 ATTAAATTTC
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
39 35 0.35
40 57 0.57
41 8 0.08
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
GGGCTAAGCCCGAAGGCATTTGTGCGAGTACTATAATCC
Found at i:36545238 original size:79 final size:80
Alignment explanation
Indices: 36545079--36545226 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
36545069 AATGATGTCT
* * **
36545079 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCGAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
36545144 CGAGATACTAAATCC
66 CGAGATACTAAATCC
* * * *
36545159 GGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCGAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
36545221 AACGAG
64 AACGAG
36545227 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 40 0.69
80 17 0.29
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCGAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAAATCC
Found at i:36545575 original size:47 final size:47
Alignment explanation
Indices: 36545445--36545802 Score: 556
Period size: 47 Copynumber: 7.6 Consensus size: 47
36545435 AAGGGTTGGT
36545445 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36545492 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36545541 AATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36545588 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36545635 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
36545682 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGTTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
36545729 AATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
* *
36545776 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36545803 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 17, Indels: 7
0.92 0.05 0.02
Matches are distributed among these distances:
46 3 0.01
47 238 0.82
48 2 0.01
49 47 0.16
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36545977 original size:37 final size:37
Alignment explanation
Indices: 36545921--36545999 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36545911 CCGAGCTCTA
* * *
36545921 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36545958 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36545995 AAGAC
1 AAGAC
36546000 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36549357 original size:39 final size:40
Alignment explanation
Indices: 36549252--36549459 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
36549242 TATTCGAATG
* * *
36549252 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
36549293 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
36549333 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
36549372 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * **
36549412 ATAACCGGGCTATGTCCCGAAGACATTTGAACGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
36549452 ATATCCGG
1 ATATCCGG
36549460 TTAAATTCTG
Statistics
Matches: 143, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
39 36 0.25
40 78 0.55
41 28 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36549392 original size:79 final size:81
Alignment explanation
Indices: 36549255--36549438 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
36549245 TCGAATGATA
* * *
36549255 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
36549320 TGTGCGAGTTACTAAT
66 TGTGCGAGTTACTAAT
* * **
36549336 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
36549398 TTGTGCGAGTTTCT-AT
65 TTGTGCGAGTTACTAAT
* * *
36549414 AACCGGGCTATGTCCCGAAGACATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
36549439 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 49 0.55
80 26 0.29
81 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTAAT
Found at i:36549462 original size:79 final size:78
Alignment explanation
Indices: 36549290--36549463 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 78
36549280 GTGCTAAGTG
* * *
36549290 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGA
**
36549355 CATTGGTGCGAGTT
65 CATTGGAACGAGTT
* * *
36549369 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTTCT-ATAACCGGGCTATGTCCCGA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGA
*
36549432 AGACATTTGAACGAG-T
62 AGACATTGGAACGAGTT
36549448 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
36549464 ATTCTGAAGG
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.04
79 52 0.65
80 25 0.31
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGAC
ATTGGAACGAGTT
Found at i:36563541 original size:33 final size:33
Alignment explanation
Indices: 36563504--36563626 Score: 196
Period size: 33 Copynumber: 3.8 Consensus size: 33
36563494 CTCTGTTTCA
36563504 GGTTGCTGGACAGAAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGAAGCTGGAATGTGAGTGTTT
36563537 GGTTGCTGGAC-GAGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGA-AGCTGGAATGTGAGTGTTT
* *
36563570 GGTTGCTGGACAGGAGTTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGAAGCTGGAATGTGAGTGTTT
*
36563603 GGTTGCT-GACAGTAGCTGGAATGT
1 GGTTGCTGGACAGAAGCTGGAATGT
36563627 CAAGAAGAAA
Statistics
Matches: 84, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
32 17 0.20
33 66 0.79
34 1 0.01
ACGTcount: A:0.20, C:0.09, G:0.41, T:0.31
Consensus pattern (33 bp):
GGTTGCTGGACAGAAGCTGGAATGTGAGTGTTT
Found at i:36579618 original size:40 final size:40
Alignment explanation
Indices: 36579544--36579702 Score: 250
Period size: 40 Copynumber: 4.0 Consensus size: 40
36579534 AACCCAAGTA
* *
36579544 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
36579583 CCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36579623 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
36579663 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36579703 TCAATAAATC
Statistics
Matches: 111, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.11
40 98 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36581724 original size:40 final size:39
Alignment explanation
Indices: 36581640--36581824 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 39
36581630 TCGAATGATG
* * * *
36581640 TCCGGGCCAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
*
36581679 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36581720 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
36581760 T-CGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
36581798 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
36581825 AACAAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36581846 original size:79 final size:79
Alignment explanation
Indices: 36581693--36581847 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
36581683 GGACTAAGAT
* * ** *
36581693 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
*
36581758 ATTCGGGTTAAGTC
66 ATTCCGGTTAAGTC
* *
36581772 CCGAAGGCATTTGTGAGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGC
1 CCGAAGGCATTTGTGAGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-C
*
36581835 TATA-TCCGGTTAA
63 TAAATTCCGGTTAA
36581848 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 42 0.66
80 20 0.31
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
ATTCCGGTTAAGTC
Found at i:36593099 original size:23 final size:23
Alignment explanation
Indices: 36593068--36593121 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
36593058 GTGCAGAATA
*
36593068 CGAGATAGGGTAACACTGCAGCT
1 CGAGGTAGGGTAACACTGCAGCT
36593091 CGAGGTAGGGTAACACTGCAGCT
1 CGAGGTAGGGTAACACTGCAGCT
36593114 CGAGGTAG
1 CGAGGTAG
36593122 ACCACCCAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.35, T:0.17
Consensus pattern (23 bp):
CGAGGTAGGGTAACACTGCAGCT
Found at i:36611546 original size:33 final size:33
Alignment explanation
Indices: 36611499--36611798 Score: 226
Period size: 33 Copynumber: 9.1 Consensus size: 33
36611489 TCCCAACAAA
* * *
36611499 CTCTA-TATATGTTTATTGTCCCAACAGACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
* * *
36611531 CTCTATTTTGTGTTTACTGTCCCAGCAGACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
* *
36611564 CTCTATTATGTGTTTACTGTCCTAGCGGACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
* * * * ** *
36611597 CTCTGTCATGTGTTTATTGTCCTAGTGGGCTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
* * * * *
36611630 CTTTGTGT-TGTGTTTATTGTCCCAACGGAATAA
1 CTCTAT-TATGTGTTTACTGTCCCAACGGACTAT
* * *
36611663 CTCTATTGTGTGTTTACTGTCCCAATGAACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
** *
36611696 CTCTGCTATGTGTTTACTATCCCAACGGACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
* * * ***
36611729 CTCTATTCTATGTTTATTGTCCCAATAAACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
* * * * * * *
36611762 CTTTGTTCTATGTTTACTATCCTAATGGACTAT
1 CTCTATTATGTGTTTACTGTCCCAACGGACTAT
36611795 CTCT
1 CTCT
36611799 GTGGATGCCA
Statistics
Matches: 215, Mismatches: 50, Indels: 5
0.80 0.19 0.02
Matches are distributed among these distances:
32 6 0.03
33 209 0.97
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (33 bp):
CTCTATTATGTGTTTACTGTCCCAACGGACTAT
Found at i:36611595 original size:66 final size:66
Alignment explanation
Indices: 36611508--36611798 Score: 262
Period size: 66 Copynumber: 4.4 Consensus size: 66
36611498 ACTCTATATA
* * * * *
36611508 TGTTTATTGTCCCAACAGACTATCTCTATTTTGTGTTTACTGTCCCAGCAGACTATCTCTATTAT
1 TGTTTACTGTCCCAACGGACTATCTCTATTATGTGTTTACTGTCCCAGTAGACTATCTCTGTTAT
36611573 G
66 G
* * * * * * * * *
36611574 TGTTTACTGTCCTAGCGGACTATCTCTGTCATGTGTTTATTGTCCTAGTGGGCTATCTTTGTGT-
1 TGTTTACTGTCCCAACGGACTATCTCTATTATGTGTTTACTGTCCCAGTAGACTATCTCTGT-TA
36611638 TG
65 TG
* * * * * *
36611640 TGTTTATTGTCCCAACGGAATAACTCTATTGTGTGTTTACTGTCCCAAT-GAACTATCTCTGCTA
1 TGTTTACTGTCCCAACGGACTATCTCTATTATGTGTTTACTGTCCCAGTAG-ACTATCTCTGTTA
36611704 TG
65 TG
* * * * * * * *
36611706 TGTTTACTATCCCAACGGACTATCTCTATTCTATGTTTATTGTCCCAATAAACTATCTTTGTTCT
1 TGTTTACTGTCCCAACGGACTATCTCTATTATGTGTTTACTGTCCCAGTAGACTATCTCTGTTAT
*
36611771 A
66 G
* * *
36611772 TGTTTACTATCCTAATGGACTATCTCT
1 TGTTTACTGTCCCAACGGACTATCTCT
36611799 GTGGATGCCA
Statistics
Matches: 179, Mismatches: 42, Indels: 8
0.78 0.18 0.03
Matches are distributed among these distances:
65 2 0.01
66 176 0.98
67 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.43
Consensus pattern (66 bp):
TGTTTACTGTCCCAACGGACTATCTCTATTATGTGTTTACTGTCCCAGTAGACTATCTCTGTTAT
G
Found at i:36611729 original size:99 final size:98
Alignment explanation
Indices: 36611508--36611753 Score: 269
Period size: 99 Copynumber: 2.5 Consensus size: 98
36611498 ACTCTATATA
* * * * *
36611508 TGTTTATTGTCCCAACAGACTATCTCTATTTTGTGTTTACTGTCCCAGCAGACTATCTCTATTAT
1 TGTTTATTGTCCCAACGGACTATCTCTA-TTTGTGTTTATTGTCCCAACAGAATAACTCTATTAT
* * *
36611573 GTGTTTACTGTCCTAGCGGACTATCTCTGTCATG
65 GTGTTTACTGTCCCAACGAACTATCTCTGTCATG
* ** * * * * *
36611607 TGTTTATTGTCCTAGTGGGCTATCTTTGTGTTGTGTTTATTGTCCCAACGGAATAACTCTATTGT
1 TGTTTATTGTCCCAACGGACTATCTCTAT-TTGTGTTTATTGTCCCAACAGAATAACTCTATTAT
*
36611672 GTGTTTACTGTCCCAATGAACTATCTCTG-CTATG
65 GTGTTTACTGTCCCAACGAACTATCTCTGTC-ATG
* * *
36611706 TGTTTACTATCCCAACGGACTATCTCTATTCTATGTTTATTGTCCCAA
1 TGTTTATTGTCCCAACGGACTATCTCTATT-TGTGTTTATTGTCCCAA
36611754 TAAACTATCT
Statistics
Matches: 118, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
98 3 0.03
99 115 0.97
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.42
Consensus pattern (98 bp):
TGTTTATTGTCCCAACGGACTATCTCTATTTGTGTTTATTGTCCCAACAGAATAACTCTATTATG
TGTTTACTGTCCCAACGAACTATCTCTGTCATG
Found at i:36611762 original size:132 final size:132
Alignment explanation
Indices: 36611508--36611767 Score: 328
Period size: 132 Copynumber: 2.0 Consensus size: 132
36611498 ACTCTATATA
* * * *
36611508 TGTTTATTGTCCCAACAGACTATCTCTATTTTGTGTTTACTGTCCCAGCAGACTATCTCTATTAT
1 TGTTTATTGTCCCAACAGAATAACTCTATTGTGTGTTTACTGTCCCAGCAGACTATCTCTACTAT
* * * * * * ***
36611573 GTGTTTACTGTCCTAGCGGACTATCTCTGTCATGTGTTTATTGTCCTAGTGGGCTATCTTTGTGT
66 GTGTTTACTATCCCAACGGACTATCTCTGTCATATGTTTATTGTCCCAATAAACTATCTTTGTGT
36611638 TG
131 TG
* *
36611640 TGTTTATTGTCCCAACGGAATAACTCTATTGTGTGTTTACTGTCCCA--ATGAACTATCTCTGCT
1 TGTTTATTGTCCCAACAGAATAACTCTATTGTGTGTTTACTGTCCCAGCA-G-ACTATCTCTACT
*
36611703 ATGTGTTTACTATCCCAACGGACTATCTCTATTC-TATGTTTATTGTCCCAATAAACTATCTTTG
64 ATGTGTTTACTATCCCAACGGACTATCTCT-GTCATATGTTTATTGTCCCAATAAACTATCTTTG
36611767 T
128 T
36611768 TCTATGTTTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
130 1 0.01
131 1 0.01
132 105 0.96
133 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (132 bp):
TGTTTATTGTCCCAACAGAATAACTCTATTGTGTGTTTACTGTCCCAGCAGACTATCTCTACTAT
GTGTTTACTATCCCAACGGACTATCTCTGTCATATGTTTATTGTCCCAATAAACTATCTTTGTGT
TG
Found at i:36614602 original size:29 final size:28
Alignment explanation
Indices: 36614536--36614636 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 28
36614526 TATAGTAAGT
* * *
36614536 CCGCACACTTAGTGTTATATAATCGAAC
1 CCGCACACTTAGTGCTATACAATTGAAC
*
36614564 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAA-TTGAAC
*
36614593 CCGCACACTTAGTTCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAA-TTGAAC
36614622 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36614637 CAATTTTATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 19 0.30
29 45 0.70
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATTGAAC
Found at i:36617761 original size:49 final size:50
Alignment explanation
Indices: 36617485--36617760 Score: 377
Period size: 49 Copynumber: 5.6 Consensus size: 50
36617475 AACATGTGAC
*
36617485 TATGTGATTATGTGATCCTGTATAAGACCATATCTGGGATATGGCATCGG
1 TATGTGATTATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGG
* * *
36617535 --TGTGATTATATGTTTCTGTATAAGACCATATCTAGGATATGGCATCGG
1 TATGTGATTATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGG
36617583 TATGTGA-TATGTGATTCTGTATAAGACCATATCTGGGATAT-GCAATCGG
1 TATGTGATTATGTGATTCTGTATAAGACCATATCTGGGATATGGC-ATCGG
* * *
36617632 TATGT-AATATGTGATTCTGTATAAGACCATATCTGGGATATGGCATTGA
1 TATGTGATTATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGG
* * *
36617681 TATGTGA-TATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGG
1 TATGTGATTATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGG
* * *
36617730 T-TGTGATTATGTGACTCTATTTAAGACCATA
1 TATGTGATTATGTGATTCTGTATAAGACCATA
36617761 GTTTTACTAT
Statistics
Matches: 201, Mismatches: 18, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
48 52 0.26
49 141 0.70
50 8 0.04
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.36
Consensus pattern (50 bp):
TATGTGATTATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGG
Found at i:36619317 original size:44 final size:43
Alignment explanation
Indices: 36619228--36619336 Score: 105
Period size: 44 Copynumber: 2.5 Consensus size: 43
36619218 ACATAGGATT
* * * *
36619228 TCGATGTGTGATTTCGTGTAAGACCACGTATGGGACGTTGGCA
1 TCGATGTGAGATTTCGTGTAAGACCACGTATGGGACATCGACA
* * * *
36619271 TCGATTTGAGATTTACGTGTGAGACCATGTTTGGGACATCGACA
1 TCGATGTGAGATTT-CGTGTAAGACCACGTATGGGACATCGACA
*
36619315 TCG-TAT-ATGATTTCGTGTAAGA
1 TCGATGTGA-GATTTCGTGTAAGA
36619337 TCTGTCTGGG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
42 9 0.17
43 19 0.35
44 26 0.48
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGATGTGAGATTTCGTGTAAGACCACGTATGGGACATCGACA
Found at i:36621886 original size:31 final size:31
Alignment explanation
Indices: 36621851--36621912 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
36621841 TGATGAGTTC
* *
36621851 GACAAGTAAGTGACA-ATTGATAAATTCATAT
1 GACAAGAAAGTGAAAGATT-ATAAATTCATAT
*
36621882 GACAAGAAAGTGAAAGATTATAAGTTCATAT
1 GACAAGAAAGTGAAAGATTATAAATTCATAT
36621913 ATGGTGTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.27
Consensus pattern (31 bp):
GACAAGAAAGTGAAAGATTATAAATTCATAT
Found at i:36624111 original size:8 final size:8
Alignment explanation
Indices: 36624093--36624122 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
36624083 ATGCAAATTA
36624093 TGTGTATTT
1 TGTG-ATTT
36624102 TGTGATTT
1 TGTGATTT
36624110 TGTGATTT
1 TGTGATTT
36624118 TGTGA
1 TGTGA
36624123 AATAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:36624466 original size:30 final size:29
Alignment explanation
Indices: 36624432--36624494 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 29
36624422 ATGAATCGGA
36624432 AGCTTTGGCACTAAGTGTCCGATTTAAACT
1 AGCTTTGGCACTAAGTGTCCGATTT-AACT
*
36624462 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTCCGATTTAACT
36624491 AGCT
1 AGCT
36624495 CCGGCTACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTCCGATTTAACT
Found at i:36627252 original size:21 final size:21
Alignment explanation
Indices: 36627226--36627266 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36627216 TTCTTATGTT
36627226 TGAATT-TGAATGTTGTTTATG
1 TGAATTATGAAT-TTGTTTATG
*
36627247 TGAATTATGAATTTTTTTAT
1 TGAATTATGAATTTGTTTAT
36627267 ATAAATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.56
Consensus pattern (21 bp):
TGAATTATGAATTTGTTTATG
Found at i:36629089 original size:20 final size:20
Alignment explanation
Indices: 36629039--36629082 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36629029 CTTGTATATA
*
36629039 AGAAAAATTTTGAAATTTTG
1 AGAAAAGTTTTGAAATTTTG
36629059 AGAAAAGTTTTGAAAGTTTT-
1 AGAAAAGTTTTGAAA-TTTTG
36629079 AGAA
1 AGAA
36629083 TATTTTTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (20 bp):
AGAAAAGTTTTGAAATTTTG
Found at i:36631166 original size:21 final size:20
Alignment explanation
Indices: 36631142--36631180 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36631132 ACCCTATTCA
*
36631142 TGTTATTGATTGTTGAAATTG
1 TGTTATTG-TTGTTAAAATTG
*
36631163 TGTTTTTGTTGTTAAAAT
1 TGTTATTGTTGTTAAAAT
36631181 CCATTCTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (20 bp):
TGTTATTGTTGTTAAAATTG
Found at i:36634136 original size:36 final size:34
Alignment explanation
Indices: 36634058--36634137 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 34
36634048 ACTCAAATGT
* *
36634058 GCTAAGGCCCAGACTGCCTCTGTTACTGAAAGGG
1 GCTAAGGCCCAGACTGACACTGTTACTGAAAGGG
* *
36634092 GTTTAGGCCCAGACTGACACTGTTACTGAAAAAGGG
1 GCTAAGGCCCAGACTGACACTGTTACTG--AAAGGG
36634128 GCTAAGGCCC
1 GCTAAGGCCC
36634138 TAACTAGAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 24 0.63
36 14 0.37
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (34 bp):
GCTAAGGCCCAGACTGACACTGTTACTGAAAGGG
Found at i:36644329 original size:48 final size:48
Alignment explanation
Indices: 36644259--36644617 Score: 394
Period size: 48 Copynumber: 7.4 Consensus size: 48
36644249 TAGGGTCATG
* * *
36644259 TGTGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTAAATA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
* * * * **
36644307 TGTGAGCCAGTGTAGGACCATGTTTGGAACATGGCATCGGCATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
* *
36644355 TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
* * * * * * **
36644403 TGTGAGCTAGTGTAAAACCATGTTTGGAACATGGCATCGACATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
* * *
36644451 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
* * * ** *
36644499 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTC
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
* * * * *
36644547 TGTGAGCCAGTGTAAGACTATGTCTGGGACAAGGCATTGGCACTGATGTA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTTA-ATA
*
36644597 TGAGAGCCAGTGTAAGACCAT
1 TGTGAGCCAGTGTAAGACCAT
36644618 TTCCAAGACA
Statistics
Matches: 252, Mismatches: 57, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
48 231 0.92
49 1 0.00
50 20 0.08
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTAATA
Found at i:36644431 original size:96 final size:96
Alignment explanation
Indices: 36644259--36644617 Score: 547
Period size: 96 Copynumber: 3.7 Consensus size: 96
36644249 TAGGGTCATG
* * * *
36644259 TGTGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTAAATATGTGAGCCAGTGTAGGA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
36644324 CCATGTTTGGAACATGGCATCGGCATTGTTA
66 CCATGTTTGGAACATGGCATCGGCATTGTTA
* * *
36644355 TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCTAGTGTAAAA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
*
36644420 CCATGTTTGGAACATGGCATCGACATTGTTA
66 CCATGTTTGGAACATGGCATCGGCATTGTTA
* *
36644451 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGTGAGCCAGTGTAAGA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
*
36644516 CCATGTTTGGAACATGGCATCGGCATTGTTC
66 CCATGTTTGGAACATGGCATCGGCATTGTTA
* * * * * *
36644547 TGTGAGCCAGTGTAAGACTATGTCTGGGACAAGGCATTGGCACTGATGTATGAGAGCCAGTGTAA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATATGTGAGCCAGTGTAA
36644612 GACCAT
64 GACCAT
36644618 TTCCAAGACA
Statistics
Matches: 238, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 213 0.89
97 3 0.01
98 22 0.09
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (96 bp):
TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATCGGCATTGTTA
Found at i:36654256 original size:43 final size:43
Alignment explanation
Indices: 36654190--36654273 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
36654180 ACATGTAACA
* *
36654190 CATCTATAATGAACTCAGACCTCTCAATGAGCTCGGATGCTTG
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTTG
**
36654233 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGCT
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCT
36654274 ACATACCTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTTG
Found at i:36660693 original size:37 final size:37
Alignment explanation
Indices: 36660643--36660721 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36660633 TTACTACGAA
* *
36660643 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
36660680 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
36660717 GTCTT
1 GTCTT
36660722 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:36660918 original size:47 final size:47
Alignment explanation
Indices: 36660840--36661571 Score: 1284
Period size: 47 Copynumber: 15.6 Consensus size: 47
36660830 CCCTTCGGGA
* * * * * * *
36660840 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36660887 CCTGTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36660934 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36660981 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36661028 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36661075 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36661122 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36661169 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36661216 CTTATCACATATATATACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36661263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36661310 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36661357 CTTATCACATATATACACCTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36661404 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36661451 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36661498 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36661545 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36661572 ACCAACCCTT
Statistics
Matches: 662, Mismatches: 23, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 662 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36661913 original size:39 final size:40
Alignment explanation
Indices: 36661796--36661977 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
36661786 GCTACTCGTT
* *
36661796 CAAATGCCTTCGGGACATAGTCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36661836 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36661876 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36661915 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
36661956 CAAA-GCCTTCGAGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36661978 AGACATCATT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36661940 original size:79 final size:80
Alignment explanation
Indices: 36661796--36661977 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
36661786 GCTACTCGTT
* * *
36661796 CAAATGCCTTCGGGACATAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
36661861 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* **
36661876 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
36661939 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
*
36661956 CAAA-GCCTTCGAGACTTAGCCC
1 CAAATGCCTTCG-GGCTTAGCCC
36661978 AGACATCATT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 52 0.60
80 31 0.36
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:36664298 original size:40 final size:40
Alignment explanation
Indices: 36664254--36664712 Score: 767
Period size: 40 Copynumber: 11.5 Consensus size: 40
36664244 TCTTCGAGGT
* * * * *
36664254 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
*
36664294 TTAGCCTGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
*
36664334 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
*
36664374 TTAGCCCGGATACATCATTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
36664414 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
*
36664454 TTAGCCCGGATACATCATTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
*
36664494 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGCGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
*
36664534 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
36664574 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
36664614 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
* * *
36664654 TTAGCTCGGATATATCACTAGCACGAATGCTCCTTGCGG-C
1 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCG-GGAC
*
36664694 TTAGCCCGGATATATCACT
1 TTAGCCCGGATACATCACT
36664713 CTCAATTCTC
Statistics
Matches: 397, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
40 395 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
Found at i:36666802 original size:28 final size:28
Alignment explanation
Indices: 36666736--36666916 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
36666726 ATATTAAGTC
* * * *
36666736 CGCACACTCAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTACATAGTCAAACT
* *
36666763 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
36666791 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
36666819 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
36666847 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
36666875 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
36666902 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36666917 GCACAATTTA
Statistics
Matches: 146, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 38 0.26
28 108 0.74
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:36666935 original size:84 final size:84
Alignment explanation
Indices: 36666736--36666944 Score: 271
Period size: 84 Copynumber: 2.5 Consensus size: 84
36666726 ATATTAAGTC
* * * * * *
36666736 CGCACACTCAGTGCTATATAATC-AGCTCGCACACCTAGTGCTACATAATCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
36666800 AGTGCTACATAGTCAAACT
66 AGTGCTACATAGTCAAACT
* *
36666819 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
36666884 AGTGCTACATAGTC-AATT
66 AGTGCTACATAGTCAAACT
* * *
36666902 CGCACACTTAGTGCTGCACA-ATTTAAACCCGCACTCTTAGTGC
1 CGCACACTTAGTGCT--ACATAGTCAAACCCGCACACTTAGTGC
36666945 CAATCTCATG
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
83 38 0.34
84 71 0.63
85 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (84 bp):
CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
AGTGCTACATAGTCAAACT
Found at i:36672367 original size:47 final size:47
Alignment explanation
Indices: 36672289--36673022 Score: 1315
Period size: 47 Copynumber: 15.6 Consensus size: 47
36672279 CCCTTCGGGA
* * * * * * *
36672289 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36672336 CCTGTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672383 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672430 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36672477 CTTATCACATATATACACTTTCACATTCATCAAATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672524 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672571 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36672618 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36672665 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672712 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36672759 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36672806 CTTATCACATATATACACTTTCACATTCAGCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36672996 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36673023 ACCAACCCTT
Statistics
Matches: 664, Mismatches: 21, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 617 0.93
49 47 0.07
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36673358 original size:79 final size:80
Alignment explanation
Indices: 36673247--36673427 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
36673237 GCTACTCGTT
* *
36673247 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATGCCTTC-GGATCTTAACCCG
* *
36673311 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
36673327 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
* *
36673390 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
36673406 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36673428 AGACATCATT
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 34 0.39
79 37 0.42
80 14 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:36673364 original size:39 final size:40
Alignment explanation
Indices: 36673247--36673427 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
36673237 GCTACTCGTT
*
36673247 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36673287 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36673327 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36673366 C-AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36673406 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36673428 AGACATCATT
Statistics
Matches: 122, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
37 2 0.02
38 9 0.07
39 37 0.30
40 67 0.55
41 7 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36678773 original size:43 final size:43
Alignment explanation
Indices: 36678691--36678774 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
36678681 ACATGAATCA
* ** **
36678691 CATCCATCATGAACTCAGACCTCTTTACGAGCTTGGATGCTTG
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCTTG
36678734 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCT
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCT
36678775 ACACACCTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (43 bp):
CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCTTG
Found at i:36680860 original size:48 final size:48
Alignment explanation
Indices: 36680791--36681151 Score: 323
Period size: 48 Copynumber: 7.5 Consensus size: 48
36680781 TGGGGTTATG
*
36680791 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * * * **
36680839 TGCGAGCTAGTGCAAGACCATGTTTGGAACATAGCATCAACATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * * *
36680887 TGTGAGCCAATGTAAGACCGTGTCTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * **
36680935 TGTGAGCCATTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * *
36680983 TGTGAGCCAGTGTAAAACCATGTCTGGGACATGACATC-AGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGA-CCTTAATA
** * * **
36681031 TGTGAGCCAGTGTAAGTTCATGTTTGGAACATGGCATCGGCATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * * *
36681079 TTTGAGCCAGCGTAAGACCATGTCTAGG-ACATGACATCAGCACC-GATGTA
1 TGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATC-G-ACCTTA-ATA
*
36681129 TGAGAGCCAGTGTAAGACCATGT
1 TGTGAGCCAGTGTAAGACCATGT
36681152 CCAGGACATG
Statistics
Matches: 241, Mismatches: 66, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
47 1 0.00
48 213 0.88
49 4 0.02
50 23 0.10
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
Found at i:36680955 original size:96 final size:96
Alignment explanation
Indices: 36680791--36681151 Score: 474
Period size: 96 Copynumber: 3.7 Consensus size: 96
36680781 TGGGGTTATG
* * * * * *
36680791 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACCTTAATATGCGAGCTAGTGCAAG
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAG-CCTCAATATGTGAGCCAGTGTAAG
* *
36680855 ACCATGTTTGGAACATAGCATCAACATTGTTA
65 ACCATGTTTGGAACATGGCATCGACATTGTTA
* * * * *
36680887 TGTGAGCCAATGTAAGACCGTGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCATTGTAAGA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGA
36680952 CCATGTTTGGAACATGGCATCGACATTGTTA
66 CCATGTTTGGAACATGGCATCGACATTGTTA
* *
36680983 TGTGAGCCAGTGTAAAACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGT
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGA
* *
36681048 TCATGTTTGGAACATGGCATCGGCATTGTTA
66 CCATGTTTGGAACATGGCATCGACATTGTTA
* * * * *
36681079 TTTGAGCCAGCGTAAGACCATGTCTAGGACATGACATCAGCAC-CGATGTATGAGAGCCAGTGTA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGC-CTC-A-ATATGTGAGCCAGTGTA
36681143 AGACCATGT
63 AGACCATGT
36681152 CCAGGACATG
Statistics
Matches: 234, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
96 209 0.89
97 3 0.01
98 22 0.09
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (96 bp):
TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATCGACATTGTTA
Found at i:36681063 original size:144 final size:142
Alignment explanation
Indices: 36680791--36681171 Score: 370
Period size: 144 Copynumber: 2.6 Consensus size: 142
36680781 TGGGGTTATG
* * * * *
36680791 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTAATATGCGAGCTAGTGCAAGA
1 TGTGAGCCAGTGTAAGACCATGTTT-GGACATGGCATCGACATT-GTATGAGAGCCAGTGTAAGA
* * * *** * *
36680856 CCATGTTTGGAACAT-AGCATCAACATTGTTATGTGAGCCAATGTAAGACCGTGTCTGGGACATG
64 CCATGTCTGGGACATGA-CATCAGCATCAATATGTGAGCCAATGTAAGACCATGTCTGGAACATG
*
36680920 GCATCGGCCTCAATA
128 GCATCGGCATCAATA
* * *
36680935 TGTGAGCCATTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGTGAGCCAGTGTAAAA
1 TGTGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGACATTG-TATGAGAGCCAGTGTAAGA
* * ** *
36681000 CCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGTTCATGTTTGGAACATGG
64 CCATGTCTGGGACATGACATCAGCATCAATATGTGAGCCAATGTAAGACCATGTCTGGAACATGG
***
36681065 CATCGGCATTGTTA
129 CATCGGCATCAATA
* * * *
36681079 TTTGAGCCAGCGTAAGACCATGTCTAGGACATGACATCAGCACCGA-TGTATGAGAGCCAGTGTA
1 TGTGAGCCAGTGTAAGACCATGT-TTGGACATGGCATC-G-A-C-ATTGTATGAGAGCCAGTGTA
** *
36681143 AGACCATGTCCAGGACATGGCATCAGCAT
61 AGACCATGTCTGGGACATGACATCAGCAT
36681172 TTTACCCTTT
Statistics
Matches: 194, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
143 2 0.01
144 143 0.74
145 5 0.03
146 40 0.21
147 3 0.02
148 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (142 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGACATTGTATGAGAGCCAGTGTAAGACC
ATGTCTGGGACATGACATCAGCATCAATATGTGAGCCAATGTAAGACCATGTCTGGAACATGGCA
TCGGCATCAATA
Found at i:36687425 original size:42 final size:42
Alignment explanation
Indices: 36687366--36687451 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
36687356 AACAGTTAGA
36687366 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
1 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
36687408 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
1 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
36687450 GG
1 GG
36687452 GAACTTTAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.21, C:0.14, G:0.35, T:0.30
Consensus pattern (42 bp):
GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
Found at i:36711752 original size:24 final size:24
Alignment explanation
Indices: 36711720--36711768 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
36711710 ATGTGTTCAT
36711720 AATCATGAA-TTCAGACCACAACTC
1 AATCATGAACTT-AGACCACAACTC
*
36711744 AATCATGAACTTAGACCATAACTC
1 AATCATGAACTTAGACCACAACTC
36711768 A
1 A
36711769 TGAGTTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (24 bp):
AATCATGAACTTAGACCACAACTC
Found at i:36718298 original size:46 final size:45
Alignment explanation
Indices: 36718245--36718414 Score: 123
Period size: 46 Copynumber: 3.7 Consensus size: 45
36718235 AGCATCCAAA
36718245 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAATGTCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGT-AATGTCCGAG
** * *
36718291 CTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTAA-T--G--TCCGAG
* * * ***
36718338 CTAGTTGAGTTGAGTCCGAGGTT-ACTTATGGATGCAAACACCCGAG
1 CTCGTTGAGTTGAGTCC-AAGTTCACTTATGGATG-TAATGTCCGAG
* * *
36718384 CTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGG
36718415 GCGGGTTACA
Statistics
Matches: 94, Mismatches: 19, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 6 0.06
46 48 0.51
47 21 0.22
48 5 0.05
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTAATGTCCGAG
Found at i:36726663 original size:19 final size:19
Alignment explanation
Indices: 36726639--36726677 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36726629 TCATATAGCA
36726639 ATGACATCTAACTGAGCTG
1 ATGACATCTAACTGAGCTG
36726658 ATGACATCTAACTGAGCTG
1 ATGACATCTAACTGAGCTG
36726677 A
1 A
36726678 CTTAGATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGACATCTAACTGAGCTG
Found at i:36733859 original size:55 final size:55
Alignment explanation
Indices: 36733736--36733889 Score: 188
Period size: 55 Copynumber: 2.8 Consensus size: 55
36733726 AAATTGTACA
* **
36733736 GCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGA-AATGAATATGAT
1 GCACTAAGTGTGCGAATT-GACTATGTAGCACTAAGTGTGCGAGTTTGAATATGAT
* ** *
36733790 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATGAT
* *
36733844 GGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGAGTT
1 -GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTT
36733890 GATTATACAG
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 36 0.42
55 50 0.58
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (55 bp):
GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATGAT
Found at i:36733892 original size:27 final size:27
Alignment explanation
Indices: 36733735--36733912 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
36733725 TAAATTGTAC
36733735 AGCACTAAGTGTGCG-ATTCGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
* * *
36733762 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36733788 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
36733816 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
36733844 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * **
36733871 AGCACTAAGTGTGCGAGTTGATTATAC
1 AGCACTAAGTGTGCGAATTGACTATGT
*
36733898 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36733913 GACTCGATAT
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
27 104 0.80
28 26 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:36733903 original size:82 final size:81
Alignment explanation
Indices: 36733732--36733912 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
36733722 GATTAAATTG
*
36733732 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
36733797 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
36733813 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
36733877 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
36733895 TACAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36733913 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36750093 original size:48 final size:49
Alignment explanation
Indices: 36749921--36750106 Score: 216
Period size: 49 Copynumber: 3.8 Consensus size: 49
36749911 AAAACTGTGA
* * * * *
36749921 TCACGTGTGTAGTACTAATTGCAGGCTATTACGTGTA-TCAGAT-GTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GGATAATT-GG
* * *
36749970 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGG
*
36750019 TCACATGTGCAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT-G
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGG
* * * *
36750067 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTG
36750107 ATAGCTTTGC
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
48 36 0.30
49 82 0.68
50 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (49 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGG
Found at i:36753565 original size:40 final size:40
Alignment explanation
Indices: 36753502--36753745 Score: 293
Period size: 40 Copynumber: 6.1 Consensus size: 40
36753492 CGGAATTTAA
** *
36753502 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
36753542 CCGG-TAATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36753582 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36753622 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36753661 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36753701 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36753741 CCGGA
1 CCGGA
36753746 CATCATTCAA
Statistics
Matches: 181, Mismatches: 14, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.19
40 132 0.73
41 13 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36753705 original size:119 final size:120
Alignment explanation
Indices: 36753521--36753745 Score: 314
Period size: 119 Copynumber: 1.9 Consensus size: 120
36753511 GCTACTCGTT
36753521 CAAATGCCTTCGGGACATAGCCCGGTAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
36753586 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
36753641 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGTAA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
36753703 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
36753746 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
118 5 0.05
119 66 0.71
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36761028 original size:39 final size:40
Alignment explanation
Indices: 36760871--36761088 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
36760861 GCTACTCGTT
* *
36760871 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
36760911 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAGTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
36760951 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
36760991 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
36761030 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
36761071 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
36761089 GCCTGGACAT
Statistics
Matches: 159, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.21
40 111 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36761055 original size:119 final size:120
Alignment explanation
Indices: 36760871--36761088 Score: 291
Period size: 119 Copynumber: 1.8 Consensus size: 120
36760861 GCTACTCGTT
*
36760871 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
36760936 ATTTAGT-AAGTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTCAAGTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
36760991 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* **
36761053 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 GGATATAGTCAAGTAGCACAAAGCCTTCGGGACTTA
36761089 GCCTGGACAT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 58 0.68
120 23 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTCAAGTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36767747 original size:40 final size:40
Alignment explanation
Indices: 36767668--36767844 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
36767658 CGGATGATAA
* *
36767668 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGATCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
36767708 CCGGGCTATGTTCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGATCCGAAGGCATTTATGCGAGTTG-CTATAT
* * *
36767748 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAT
1 CCGGGCTAAGATCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
36767788 CCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGATCCGAAGGCATTTATGCGAGTTGCTATAT
36767828 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGAT-CCGAAG
36767845 ATAGTTGGGT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 100 0.86
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGATCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:36767809 original size:80 final size:80
Alignment explanation
Indices: 36767668--36767844 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
36767658 CGGATGATAA
* * * * **
36767668 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTTCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
36767733 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* *
36767748 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATATCCGGGCTAAGACCCGAGGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
36767813 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
36767828 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36767845 ATAGTTGGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 70 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:36768139 original size:59 final size:59
Alignment explanation
Indices: 36768047--36768166 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
36768037 AAGCGTGAAG
36768047 TAAGTATGATTATGAGAATGTGCATATATGAAGTTTTTCATTTAGCCATATGAATGTTA
1 TAAGTATGATTATGAGAATGTGCATATATGAAGTTTTTCATTTAGCCATATGAATGTTA
36768106 TAAGTATGATTATGAGAATGTGCATATATGAAGTTTTTCATTTAGCCATATGAATGTTA
1 TAAGTATGATTATGAGAATGTGCATATATGAAGTTTTTCATTTAGCCATATGAATGTTA
36768165 TA
1 TA
36768167 CTTTAGTCAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (59 bp):
TAAGTATGATTATGAGAATGTGCATATATGAAGTTTTTCATTTAGCCATATGAATGTTA
Found at i:36776254 original size:80 final size:80
Alignment explanation
Indices: 36776116--36776323 Score: 371
Period size: 80 Copynumber: 2.6 Consensus size: 80
36776106 CAGATGATAA
* *
36776116 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
*
36776181 TGCTAGTGATTTTAT
66 TGCTAGTGATTATAT
36776196 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36776261 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
* *
36776276 CCGGGCTAAGACCTGAAGGCATTTGTGGGAGTTGCTATATCCGGGCTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTA
36776324 AGACCCGAGG
Statistics
Matches: 123, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 123 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
TGCTAGTGATTATAT
Found at i:36776340 original size:40 final size:40
Alignment explanation
Indices: 36776116--36776372 Score: 288
Period size: 40 Copynumber: 6.5 Consensus size: 40
36776106 CAGATGATAA
* *
36776116 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * *
36776156 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
36776196 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
36776236 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
* *
36776276 CCGGGCTAAGACCTGAAGGCATTTGTGGGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
36776316 CCGGGCTAAGACCCGAGGGAATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
36776356 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36776373 ATACTTGGGT
Statistics
Matches: 179, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 17 0.09
40 157 0.88
41 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:36784342 original size:43 final size:43
Alignment explanation
Indices: 36784241--36784364 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
36784231 GGTTATTGAG
* * **
36784241 ATGTGATTACATGTAAGACGATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCAAT
* * *
36784284 AT-TCGATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCAAT
1 ATGT-GATTACATGTAAGACCATGTCTGGGACAATGGCATCAAT
* * * *
36784327 ATGTGATAACTTGTAAGACCATATCTGGGA-TATGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCAT
36784365 TGTATGAGCT
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
42 8 0.12
43 57 0.86
44 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCAAT
Found at i:36787601 original size:9 final size:9
Alignment explanation
Indices: 36787581--36787611 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
36787571 AAAATGACGA
36787581 TTATGC-CC
1 TTATGCTCC
36787589 TTATGCTCC
1 TTATGCTCC
36787598 TTATGCTCC
1 TTATGCTCC
36787607 TTATG
1 TTATG
36787612 ATTGATGTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.13, C:0.29, G:0.13, T:0.45
Consensus pattern (9 bp):
TTATGCTCC
Found at i:36796596 original size:25 final size:25
Alignment explanation
Indices: 36796560--36796611 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
36796550 TGACCCACAG
** *
36796560 CTTGTGAAAGCATGTCGATTTACAA
1 CTTGTGAAAGCATACCGATCTACAA
*
36796585 CTTGTGAGAGCATACCGATCTACAA
1 CTTGTGAAAGCATACCGATCTACAA
36796610 CT
1 CT
36796612 CAAGTGAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
CTTGTGAAAGCATACCGATCTACAA
Found at i:36801475 original size:40 final size:39
Alignment explanation
Indices: 36801420--36801653 Score: 281
Period size: 40 Copynumber: 5.9 Consensus size: 39
36801410 GGATATAACT
* * *
36801420 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
36801460 ACTCGCACAATTGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* *
36801500 ACTCGCACAAATGCCATCGGGACTTATCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
36801540 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* * *
36801580 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
* ** *
36801619 ACTAGTGCAGAA-GCCTTCGGGACTTAGCCAGGTTT
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCGGTTT
36801654 TCATCCAAAT
Statistics
Matches: 168, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 34 0.20
40 129 0.77
41 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:36809575 original size:47 final size:47
Alignment explanation
Indices: 36809474--36809832 Score: 541
Period size: 47 Copynumber: 7.7 Consensus size: 47
36809464 CCCTTCGGGA
* * * * * *
36809474 CTTATCACATTTATACACTTTCA-ATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36809520 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36809567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36809614 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36809660 CTTATAACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36809707 CTTATCACATATGTACACTTTCACATTCATCACATC-GCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36809752 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36809798 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36809833 AGAATCCTAA
Statistics
Matches: 292, Mismatches: 17, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
45 38 0.13
46 110 0.38
47 144 0.49
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36809662 original size:93 final size:93
Alignment explanation
Indices: 36809474--36809832 Score: 546
Period size: 93 Copynumber: 3.9 Consensus size: 93
36809464 CCCTTCGGGA
* * * * * * * *
36809474 CTTATCACATTTATACACTTTCA-ATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36809538 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATC-GCCATTAGGC
36809567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36809632 TTTCACATTCATCACATCGCCATTAGGC
66 TTTCACATTCATCACATCGCCATTAGGC
* * *
36809660 CTTATAACATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36809725 TTTCACATTCATCACATCGCCATTA-GC
66 TTTCACATTCATCACATCGCCATTAGGC
* *
36809752 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
36809815 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
36809833 AGAATCCTAA
Statistics
Matches: 247, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
90 1 0.00
91 31 0.13
92 44 0.18
93 119 0.48
94 52 0.21
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGCCATTAGGC
Found at i:36809726 original size:140 final size:138
Alignment explanation
Indices: 36809474--36809832 Score: 517
Period size: 140 Copynumber: 2.6 Consensus size: 138
36809464 CCCTTCGGGA
* * * * * * * * *
36809474 CTTATCACATTTATACACTTTCA-ATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGCCATTAGGCCTTATAACATATATACAC
36809538 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
36809603 GGCCATTAGGC
130 -GCCATTA-GC
*
36809614 CTTATCACATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATAACATATGTACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATAACATATATACACT
*
36809679 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
36809744 CCATTAGC
131 CCATTAGC
** *
36809752 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGCCTTATAACATATATACAC
*
36809815 TGTTCACATCCATCACAT
65 T-TTCACATTCATCACAT
36809833 AGAATCCTAA
Statistics
Matches: 200, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
137 1 0.00
138 68 0.34
139 14 0.07
140 109 0.55
141 8 0.04
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (138 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATAACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
CCATTAGC
Found at i:36827806 original size:40 final size:40
Alignment explanation
Indices: 36827744--36827921 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
36827734 AAGCCAAGTA
* * * *
36827744 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
36827783 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36827823 CCTTCGGGACTTAGCCGGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
36827863 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
36827903 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36827922 TTATCATCCA
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.11
40 109 0.89
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36835943 original size:39 final size:38
Alignment explanation
Indices: 36835838--36836064 Score: 258
Period size: 39 Copynumber: 5.8 Consensus size: 38
36835828 GGATATAACT
* * * *
36835838 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGATT-TAGTA
36835878 ACTCGCACAATTGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAA-TGCCTTCGGGACTTAGCCC-GATTTAGTA
36835918 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCC-GATTTAGTA
* **
36835957 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGATTTAGTA
* *
36835996 ACTCGCACAGATGCCTTCGAGACTTAGCCCGGA-TTAGTC
1 ACTCGCACA-ATGCCTTCGGGACTTAGCCC-GATTTAGTA
* **
36836035 ACTAGTGCAGATGCCTTCGGGACTTAGCCC
1 ACTCGCACA-ATGCCTTCGGGACTTAGCCC
36836065 AGTTTTCATC
Statistics
Matches: 166, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 101 0.61
40 61 0.37
41 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (38 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGATTTAGTA
Found at i:36835945 original size:79 final size:77
Alignment explanation
Indices: 36835838--36836066 Score: 282
Period size: 79 Copynumber: 2.9 Consensus size: 77
36835828 GGATATAACT
* *
36835838 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCACAATTGCCTTCGGGACT
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT--AGTAACTCGCACAA-TGCCTTCGGGACT
*
36835902 TAGCCCAGATTTAGTA
62 TAGCCCAGAGTTAGTA
*
36835918 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCAC-AATGCCTTCGGGACTTA
*
36835983 GCCC-GGGTTAGTA
64 GCCCAGAGTTAGTA
* * * **
36835996 ACTCGCACAGATGCCTTCGAGACTTAGCCCGGATTAGTCACTAGTGCAGATGCCTTCGGGACTTA
1 ACTCGCACA-ATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACA-ATGCCTTCGGGACTTA
36836061 GCCCAG
64 GCCCAG
36836067 TTTTCATCCA
Statistics
Matches: 132, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.34
79 75 0.57
80 9 0.07
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (77 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAATGCCTTCGGGACTTAGC
CCAGAGTTAGTA
Found at i:36848019 original size:26 final size:26
Alignment explanation
Indices: 36847989--36848069 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 26
36847979 AGCACGGATG
* *
36847989 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
36848015 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
36848042 CCAGATCAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
36848069 C
1 C
36848070 TAGGACGCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.25
27 36 0.75
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:36855875 original size:27 final size:27
Alignment explanation
Indices: 36855821--36855931 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
36855811 AGCATGGCTG
* *
36855821 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
36855847 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
36855874 CCAGAATAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
36855901 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
36855928 CCAG
1 CCAG
36855932 TACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:36864105 original size:21 final size:22
Alignment explanation
Indices: 36864079--36864132 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
36864069 TGGCCTGCAG
**
36864079 CACGGGCGTGTCCC-AGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
*
36864100 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
36864122 CACGGGCGTGT
1 CACGGGCGTGT
36864133 GAACCCTGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.13, C:0.33, G:0.37, T:0.17
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:36865839 original size:28 final size:28
Alignment explanation
Indices: 36865805--36865860 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
36865795 TTCACATGCC
36865805 CATGTGGTCCAAGGGACACGCCCGTGTG
1 CATGTGGTCCAAGGGACACGCCCGTGTG
36865833 CATGTGGTCCAAGGGACACGCCCGTGTG
1 CATGTGGTCCAAGGGACACGCCCGTGTG
36865861 ACCTCGGGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.29, G:0.36, T:0.18
Consensus pattern (28 bp):
CATGTGGTCCAAGGGACACGCCCGTGTG
Found at i:36866248 original size:17 final size:18
Alignment explanation
Indices: 36866226--36866259 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36866216 CATATTAAAA
36866226 TGTTTT-ATTGAAAACCT
1 TGTTTTCATTGAAAACCT
36866243 TGTTTTCATTGAAAACC
1 TGTTTTCATTGAAAACC
36866260 CTTCCTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (18 bp):
TGTTTTCATTGAAAACCT
Found at i:36867443 original size:29 final size:29
Alignment explanation
Indices: 36867381--36867470 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
36867371 TACATATATG
* **
36867381 CATATGGCCCACTAGGCCC-AATCTTATT
1 CATATGGCCCATTAGGCCCAAATCACATT
36867409 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
*
36867438 CGTATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
36867467 CATA
1 CATA
36867471 CTCATGCTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 18 0.32
29 38 0.68
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:36867702 original size:16 final size:16
Alignment explanation
Indices: 36867678--36867714 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
36867668 TGTAGCTAAA
*
36867678 ATTTTGGCTTTTCGGC
1 ATTTCGGCTTTTCGGC
*
36867694 ATTTCGGCTTTTTGGC
1 ATTTCGGCTTTTCGGC
36867710 ATTTC
1 ATTTC
36867715 AGGATTTGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.19, G:0.22, T:0.51
Consensus pattern (16 bp):
ATTTCGGCTTTTCGGC
Found at i:36876106 original size:40 final size:40
Alignment explanation
Indices: 36876069--36876253 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
36876059 GCTACTCGTT
*
36876069 CAAATGCCTTCGGGGCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGATT-TAGTAACTCGCA
* *
36876109 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGATTTAGTAACTCGCA
* * *
36876149 CAAATGCCTTC-GGGCTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGATTTAGTAACTCGCA
** * * * * *
36876188 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGGCTTAGCCCGGATTTAGTAAC-TCGCA
*
36876229 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGGCTTAGCCCGGA
36876254 CATCATTCAA
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:36876172 original size:79 final size:80
Alignment explanation
Indices: 36876069--36876253 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
36876059 GCTACTCGTT
* *
36876069 CAAATGCCTTCGGGGCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
36876132 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* * **
36876149 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTTGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
36876214 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
36876229 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
36876254 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 31 0.34
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:36885156 original size:20 final size:20
Alignment explanation
Indices: 36885128--36885165 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36885118 CTAGGAACTA
36885128 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
36885148 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
36885166 TATATGTGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:36886444 original size:30 final size:30
Alignment explanation
Indices: 36886410--36886468 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
36886400 ATAAATACAT
36886410 TCCACATTCATTTCAAGCATATAAGTAACA
1 TCCACATTCATTTCAAGCATATAAGTAACA
36886440 TCCACATTCATTTCAAGCATATAAGTAAC
1 TCCACATTCATTTCAAGCATATAAGTAAC
36886469 TTTCTCATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.24, G:0.07, T:0.31
Consensus pattern (30 bp):
TCCACATTCATTTCAAGCATATAAGTAACA
Found at i:36890859 original size:18 final size:18
Alignment explanation
Indices: 36890832--36890866 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36890822 GCCATCAACG
* *
36890832 TTTTCTTAATTTTAGATT
1 TTTTCCTAATATTAGATT
36890850 TTTTCCTAATATTAGAT
1 TTTTCCTAATATTAGAT
36890867 ACTTTAAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTCCTAATATTAGATT
Found at i:36897765 original size:43 final size:42
Alignment explanation
Indices: 36897701--36897820 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 42
36897691 TACCGTACCA
* * *
36897701 ATGCCATATCCCAGTTATGGTCTTACAGGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
36897743 ATGCCAATAGCCCAGCTGTGGTCTTACATG-AAGTATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
36897786 ATGCCATATCCCAAATATGGTCTTACATGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCT
36897821 TAGTAACCCT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:36907479 original size:17 final size:18
Alignment explanation
Indices: 36907457--36907491 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
36907447 ATTTAGGTCG
36907457 TGTGGG-CCACACGGGCA
1 TGTGGGTCCACACGGGCA
36907474 TGTGGGTCCACACGGGCA
1 TGTGGGTCCACACGGGCA
36907492 AACAACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14
Consensus pattern (18 bp):
TGTGGGTCCACACGGGCA
Found at i:36911059 original size:47 final size:47
Alignment explanation
Indices: 36911005--36911295 Score: 393
Period size: 47 Copynumber: 6.1 Consensus size: 47
36910995 TTAGGATTTT
* *
36911005 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * * *
36911052 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCAAATGACCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
36911105 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
36911152 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
36911199 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
36911246 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
36911293 ATG
1 ATG
36911296 CGAAATGTGT
Statistics
Matches: 218, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
47 176 0.81
48 1 0.00
52 1 0.00
53 40 0.18
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:36911132 original size:23 final size:23
Alignment explanation
Indices: 36911105--36911179 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
36911095 CAAATGACCA
36911105 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
36911128 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
36911152 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
36911175 ATGTG
1 ATGTG
36911180 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:36911335 original size:46 final size:46
Alignment explanation
Indices: 36911269--36911359 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
36911259 GAACATGAAT
* * * *
36911269 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTACGAGATGG
* *
36911315 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTACGAGATG
36911360 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTACGAGATGG
Found at i:36911366 original size:141 final size:140
Alignment explanation
Indices: 36911014--36911344 Score: 382
Period size: 141 Copynumber: 2.3 Consensus size: 140
36911004 TATGTGATGG
* * **
36911014 ATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATAT
1 ATGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA-C---ATGCAT
* ** *
36911079 ATATGCGTGATAAGGCCAAATGACCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
62 ATAT--GAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCG
*
36911144 AATGGCCAATGTGATGA
125 AATGGCCAATGCGA-GA
* *
36911161 ATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATAT
1 ATGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATAT
* * *
36911226 GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGC
66 GAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGC
*
36911291 TAATGCGA-A
131 CAATGCGAGA
* *
36911300 ATGTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 ATGTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
36911345 GATATGTACG
Statistics
Matches: 165, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
139 6 0.04
140 20 0.12
141 66 0.40
142 10 0.06
143 8 0.05
146 1 0.01
147 54 0.33
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATAT
GAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGC
CAATGCGAGA
Found at i:36911556 original size:37 final size:37
Alignment explanation
Indices: 36911506--36911651 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
36911496 GGAAATATAT
*
36911506 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
36911543 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
36911580 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * * *
36911617 TCCAGGTAAGACCCGATAACTTCATGTAGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
36911652 CGTCTGAGCT
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:36912962 original size:40 final size:40
Alignment explanation
Indices: 36912907--36913298 Score: 613
Period size: 40 Copynumber: 9.8 Consensus size: 40
36912897 GAGAATTGAG
**
36912907 AGTGATATATCCGGGCTAAGTCCCGAAAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
36912947 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
36912987 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
36913027 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
36913067 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
36913107 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
36913147 AATGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
36913187 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
36913227 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
36913267 AGTGTTATATCCGGGCTAGGTCCCAAGGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
36913299 ATCATGCTGG
Statistics
Matches: 327, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 327 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:36917093 original size:47 final size:47
Alignment explanation
Indices: 36917042--36917238 Score: 277
Period size: 47 Copynumber: 4.1 Consensus size: 47
36917032 TTAGGATTTT
*
36917042 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *** *
36917089 ATGTGATTAATGTGAACCTGTATATATATATACGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGT--GTGATAAGGCCGAATGGCCA
36917142 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
36917189 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
36917236 ATG
1 ATG
36917239 CGAAACGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
47 83 0.63
48 1 0.01
49 6 0.05
51 6 0.05
52 1 0.01
53 35 0.27
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:36917169 original size:23 final size:23
Alignment explanation
Indices: 36917142--36917216 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
36917132 CGAATGGCCA
36917142 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
36917165 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
36917189 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
36917212 ATGTG
1 ATGTG
36917217 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:36917503 original size:37 final size:37
Alignment explanation
Indices: 36917453--36917596 Score: 252
Period size: 37 Copynumber: 3.9 Consensus size: 37
36917443 AAATATATTT
*
36917453 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
36917490 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
36917527 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* * *
36917564 CGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
36917597 CGTCTGAGCT
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:36922167 original size:20 final size:19
Alignment explanation
Indices: 36922131--36922181 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
36922121 AAGGGCTATT
*
36922131 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
36922150 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
36922170 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
36922182 GTTGCTATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:36924498 original size:40 final size:40
Alignment explanation
Indices: 36924443--36924624 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
36924433 TATTCGAATG
*
36924443 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
36924483 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
36924523 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
36924563 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
36924603 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36924625 TACTTGGGTT
Statistics
Matches: 136, Mismatches: 5, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
39 14 0.10
40 120 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36935099 original size:20 final size:19
Alignment explanation
Indices: 36935063--36935113 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
36935053 AAGGGCTATT
*
36935063 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
36935082 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
36935102 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
36935114 GTTTCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:36935865 original size:46 final size:48
Alignment explanation
Indices: 36935810--36935932 Score: 142
Period size: 46 Copynumber: 2.6 Consensus size: 48
36935800 TATGAGAGCC
* * * *
36935810 AGTGTAAGACATGTCTAGGACATGCATCGACATTGA-A-ACAAGACCT
1 AGTGCAAGACATGTCTGGGACATGCATCGACATCGAGATACAAAACCT
* * * *
36935856 AGTGCAAGACATGTTTGGGACATGCATCGACCTCGAGATATAAAAGCT
1 AGTGCAAGACATGTCTGGGACATGCATCGACATCGAGATACAAAACCT
*
36935904 AGTGCAAGACCTGTCTGGGACATGGCATC
1 AGTGCAAGACATGTCTGGGACAT-GCATC
36935933 AACTTGTTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 31 0.48
47 1 0.02
48 27 0.42
49 5 0.08
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (48 bp):
AGTGCAAGACATGTCTGGGACATGCATCGACATCGAGATACAAAACCT
Found at i:36950331 original size:47 final size:45
Alignment explanation
Indices: 36950277--36950590 Score: 197
Period size: 47 Copynumber: 6.7 Consensus size: 45
36950267 TTTCTTGTGT
36950277 GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCTCGACGATGACA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCTCGA-GATGA-A
* * * *
36950324 GCCAGTGTAAGACGTGTCTGGGACATGCATC-GGCTAAGAGTTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCT-CGAGATGAA
* * * * * * *
36950368 GCTAGTGTAAGACATTTCTGTGACATACATTGGCCTCAATGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCTCGA-GATGA-A
* * * * *
36950415 GCCAGTGTAAGACGTGTCTGGGACATGCAT-TGGCTAAGAGTTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCT-CGAGATGAA
** * * * *
36950459 GATAGTGTAAGACATATCTGGGACATGCATC-AGCACGTATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCTCG---AGATGA-A
* * * *
36950507 GCTAGTATAAGACCATGTCTGGGACATGGCGTCGGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGGCTCGA-GATGA-A
* *
36950556 GCCAGTGTAAAACCATGTTTGGGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
36950591 CAACTTATCC
Statistics
Matches: 201, Mismatches: 50, Indels: 30
0.72 0.18 0.11
Matches are distributed among these distances:
43 1 0.00
44 54 0.27
45 6 0.03
46 16 0.08
47 58 0.29
48 11 0.05
49 48 0.24
50 4 0.02
51 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGGCTCGAGATGAA
Found at i:36950393 original size:44 final size:44
Alignment explanation
Indices: 36950274--36950489 Score: 204
Period size: 47 Copynumber: 4.8 Consensus size: 44
36950264 AGATTTCTTG
* *
36950274 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGGCT-CGACGA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTAAGA-GT
* *
36950319 TGACAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGT
1 TG--TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGT
* * * * *
36950365 TGTGCTAGTGTAAGACATTTCTGTGACATACATTGGCCTCAATGA--
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT-AA-GAGT
* *
36950410 TGATAGCCAGTGTAAGACGTGTCTGGGACATGCATTGGCTAAGAGT
1 TG-T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGT
** *
36950456 TGTGATAGTGTAAGACATATCTGGGACATGCATC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC
36950490 AGCACGTATA
Statistics
Matches: 140, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
44 55 0.39
45 9 0.06
46 14 0.10
47 62 0.44
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGT
Found at i:36950429 original size:91 final size:91
Alignment explanation
Indices: 36950274--36950489 Score: 315
Period size: 91 Copynumber: 2.4 Consensus size: 91
36950264 AGATTTCTTG
* * * * *
36950274 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGGCTCGACGATGACAGCCAGTGTAAGACGT
1 TGTGCTAGTGTAAGACATATCTGGGACATACATCGGCCTCAACGATGACAGCCAGTGTAAGACGT
36950339 GTCTGGGACATGCATCGGCTAAGAGT
66 GTCTGGGACATGCATCGGCTAAGAGT
* * * * *
36950365 TGTGCTAGTGTAAGACATTTCTGTGACATACATTGGCCTCAATGATGATAGCCAGTGTAAGACGT
1 TGTGCTAGTGTAAGACATATCTGGGACATACATCGGCCTCAACGATGACAGCCAGTGTAAGACGT
*
36950430 GTCTGGGACATGCATTGGCTAAGAGT
66 GTCTGGGACATGCATCGGCTAAGAGT
* *
36950456 TGTGATAGTGTAAGACATATCTGGGACATGCATC
1 TGTGCTAGTGTAAGACATATCTGGGACATACATC
36950490 AGCACGTATA
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 110 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (91 bp):
TGTGCTAGTGTAAGACATATCTGGGACATACATCGGCCTCAACGATGACAGCCAGTGTAAGACGT
GTCTGGGACATGCATCGGCTAAGAGT
Found at i:36950711 original size:12 final size:12
Alignment explanation
Indices: 36950691--36950720 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36950681 AGTATAATAT
*
36950691 TGAGAATGAGAA
1 TGAGCATGAGAA
36950703 TGAGCATGAGAA
1 TGAGCATGAGAA
36950715 TGAGCA
1 TGAGCA
36950721 CAAAATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.07, G:0.33, T:0.17
Consensus pattern (12 bp):
TGAGCATGAGAA
Found at i:36954009 original size:30 final size:29
Alignment explanation
Indices: 36953948--36954009 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
36953938 TAAGTTTCAT
* *
36953948 TTTATGGAAAGTTATGGACGAAATTGGAA
1 TTTATGGAAAGTTAGGGACGAAAATGGAA
*
36953977 TTTATGGAAAAGTTAGGGGC-AAAATGGTAA
1 TTTATGG-AAAGTTAGGGACGAAAATGG-AA
36954007 TTT
1 TTT
36954010 TGCCTAGGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.32
Consensus pattern (29 bp):
TTTATGGAAAGTTAGGGACGAAAATGGAA
Found at i:36961357 original size:40 final size:40
Alignment explanation
Indices: 36961298--36961725 Score: 757
Period size: 40 Copynumber: 10.7 Consensus size: 40
36961288 GAGCATTGGA
*
36961298 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
36961338 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36961378 ATATATCCGGGCTACGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36961418 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36961458 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
36961498 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36961538 ATATATCCGGGCTACGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36961578 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36961618 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
36961658 ATATATCTGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
36961698 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
36961726 ATGTGTTTGC
Statistics
Matches: 372, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 372 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:36980226 original size:13 final size:13
Alignment explanation
Indices: 36980208--36980241 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
36980198 AATTCCACAT
36980208 TTTTCTCCCTTAG
1 TTTTCTCCCTTAG
36980221 TTTTCTCCCTTAG
1 TTTTCTCCCTTAG
36980234 TTTTCTCC
1 TTTTCTCC
36980242 TAAAATCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.32, G:0.06, T:0.56
Consensus pattern (13 bp):
TTTTCTCCCTTAG
Found at i:36980909 original size:95 final size:94
Alignment explanation
Indices: 36980782--36980967 Score: 255
Period size: 95 Copynumber: 2.0 Consensus size: 94
36980772 AGGAGCTGTG
* *
36980782 AATCAGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCAG
1 AATCAGACATTAACCATTACACAATGCTACTCATACGAACTATGAAGAATCCACAACACATGCAG
*
36980847 AATCTTAGCCATCGGTAAGGTATCCAGTA
66 AATCTTAGCCATCAGTAAGGTATCCAGTA
* ** * * ** * *
36980876 AATCGAGACATTAACCATTAGATGATGCTACTCATATGAACTATGAAGAATCCGCATTATATGTA
1 AATC-AGACATTAACCATTACACAATGCTACTCATACGAACTATGAAGAATCCACAACACATGCA
36980941 GAATCTTAGCCATCAGTAAGGTATCCA
65 GAATCTTAGCCATCAGTAAGGTATCCA
36980968 TTATCGAAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 4 0.05
95 75 0.95
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (94 bp):
AATCAGACATTAACCATTACACAATGCTACTCATACGAACTATGAAGAATCCACAACACATGCAG
AATCTTAGCCATCAGTAAGGTATCCAGTA
Done.