Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 114 of 259
Found at i:36981759 original size:25 final size:25
Alignment explanation
Indices: 36981731--36981782 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
36981721 AAATATTTAC
* *
36981731 ACTTGGGTCCCTATATTCAAAACTA
1 ACTTGAGTCCCTATATCCAAAACTA
*
36981756 ACTTTAGTCCCTATATCCAAAACTA
1 ACTTGAGTCCCTATATCCAAAACTA
36981781 AC
1 AC
36981783 AATTTTCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (25 bp):
ACTTGAGTCCCTATATCCAAAACTA
Found at i:36982501 original size:23 final size:23
Alignment explanation
Indices: 36982470--36982516 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
36982460 AACATTTAAC
*
36982470 ATCATAATATTTAAAATAAATTT
1 ATCAAAATATTTAAAATAAATTT
36982493 ATCAAAATATTTAAAATAAATTT
1 ATCAAAATATTTAAAATAAATTT
36982516 A
1 A
36982517 ACTCATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (23 bp):
ATCAAAATATTTAAAATAAATTT
Found at i:36983340 original size:28 final size:28
Alignment explanation
Indices: 36983309--36983365 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
36983299 CTATCACAGA
*
36983309 AACAGTATTAGGTGGGCCTTAGCCCAAT
1 AACAGTATTAGGTGGGCCTAAGCCCAAT
36983337 AACAGTATTAGGTGGGCCTAAGCCCAAT
1 AACAGTATTAGGTGGGCCTAAGCCCAAT
36983365 A
1 A
36983366 CAGAACCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (28 bp):
AACAGTATTAGGTGGGCCTAAGCCCAAT
Found at i:36998810 original size:30 final size:29
Alignment explanation
Indices: 36998774--36998956 Score: 163
Period size: 30 Copynumber: 6.1 Consensus size: 29
36998764 AAGAAACATT
* * *
36998774 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
36998804 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
36998834 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
36998864 ATCAGAATCAGTAACAGAATCAGAATCAGT
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
* **
36998894 ATTAGTAACAG-AATCAGAATCAGAATCAGA
1 ATCAG-AATTGTAA-CAGAATCAGAATCAGA
* * *
36998924 ATCAGAATTACGTGATAGAATCAGAACCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
36998955 AT
1 AT
36998957 GTGAATGCAA
Statistics
Matches: 127, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
29 5 0.04
30 98 0.77
31 23 0.18
32 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:36998949 original size:6 final size:6
Alignment explanation
Indices: 36998795--36998931 Score: 167
Period size: 6 Copynumber: 22.8 Consensus size: 6
36998785 AACCAAAATG
*
36998795 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
36998843 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* *
36998891 AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT
36998932 TACGTGATAG
Statistics
Matches: 115, Mismatches: 6, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
5 9 0.08
6 99 0.86
7 6 0.05
8 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:36999126 original size:27 final size:26
Alignment explanation
Indices: 36999088--36999189 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
36999078 GCTCAGTTAT
*
36999088 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCAGA-A
*
36999115 CAGATATTGTGATAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGAA
* * *
36999141 GAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGACAGAGCCACCAG-AA
* * *
36999169 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
36999190 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.80
28 7 0.11
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAGAA
Found at i:36999375 original size:22 final size:22
Alignment explanation
Indices: 36999347--36999411 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
36999337 GCAAATACGT
*
36999347 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
36999369 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
36999391 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
36999412 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:36999894 original size:27 final size:27
Alignment explanation
Indices: 36999855--37000396 Score: 678
Period size: 27 Copynumber: 20.5 Consensus size: 27
36999845 TACCCCACAA
*
36999855 GGTATCTT-GGTAATTCCACCCTACAGG
1 GGTAT-TTCGGTAATTCTACCCTACAGG
** * *
36999882 GGTATTTTAGTAATTCTACCTTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
36999909 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
36999936 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
36999962 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
36999989 GATATTTCGATAATTCTACCCTAGAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
37000016 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
37000042 GGTATTGCGATAATTCTACCCTATA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
*
37000068 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
37000095 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37000122 GGTATTGCGATAATTCTACCCTACA--
1 GGTATTTCGGTAATTCTACCCTACAGG
37000147 GG------GGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37000168 GGTATTTCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
37000195 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37000222 GGTATTACGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
37000249 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37000276 GGTATTTCGGTAATTCTACCCAACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
37000303 GGTATTTCGGCT-ATTCTACCCTACAGG
1 GGTATTTCGG-TAATTCTACCCTACAGG
* * * * *
37000330 GGTAATTCGATAATTTTAACCTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37000357 GGTATTCCGGTAATTCTACGCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
37000384 GGTATTTCGGTAA
1 GGTATTTCGGTAA
37000397 ATTTGTAAAC
Statistics
Matches: 450, Mismatches: 52, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.04
21 2 0.00
25 2 0.00
26 73 0.16
27 356 0.79
28 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:37000156 original size:19 final size:19
Alignment explanation
Indices: 37000132--37000171 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
37000122 GGTATTGCGA
37000132 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
37000151 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
37000170 TA
1 TA
37000172 TTTCGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
TAATTCTACCCTACAGGGG
Found at i:37000442 original size:81 final size:81
Alignment explanation
Indices: 37000357--37000513 Score: 174
Period size: 81 Copynumber: 1.9 Consensus size: 81
37000347 AACCTACAGA
* * * *
37000357 GGTATTCCGGTAATTCTA-CGCTAC-AGGGGTATTTCGGTAAATTTGTAAACTAAGGGCATTTTG
1 GGTATTCCGGTAATTCTATCGAT-CGA-GGGTATTTCAGTAAATTTGCAAACTAAGGGCATTTCG
37000420 GTAATTTTACAAACTAGG
64 GTAATTTTACAAACTAGG
** * * * * * *
37000438 GGTATTTTGGTAATTTTATTGATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGGT
1 GGTATTCCGGTAATTCTATCGATCGAGGGTATTTCAGTAAATTTGCAAACTAAGGGCATTTCGGT
37000503 AATTTTACAAA
66 AATTTTACAAA
37000514 TCGAGGATAT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
81 59 0.95
82 3 0.05
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (81 bp):
GGTATTCCGGTAATTCTATCGATCGAGGGTATTTCAGTAAATTTGCAAACTAAGGGCATTTCGGT
AATTTTACAAACTAGG
Found at i:37000467 original size:27 final size:27
Alignment explanation
Indices: 37000383--37000786 Score: 203
Period size: 27 Copynumber: 15.1 Consensus size: 27
37000373 TACGCTACAG
* * * *
37000383 GGGTATTTCGGTAAATTTGTAAA-CTAA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* * *
37000410 GGGCATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTATAAATCGA
**
37000436 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* **
37000464 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* *
37000491 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
37000518 GGATATTTGGGTAATTTTATAAACCG-
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
37000544 GGGTACTTTGGTAATTTTACAACT-GG
1 GGGTATTTTGGTAATTTTATAAATCGA
** *
37000570 GGGTATTTCAGTAATTTCAT-AATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
37000596 GGGTAAAATGGTAATTTTGTAAA-CTGA
1 GGGTATTTTGGTAATTTTATAAATC-GA
*** *
37000623 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
***** * *
37000650 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
37000677 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
37000704 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
37000731 GGGTGA-AACGGTAATTCTGTAAATCGA
1 GGGT-ATTTTGGTAATTTTATAAATCGA
* * * *
37000758 TGGTACTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
37000785 GG
1 GG
37000787 ACATTTTAAT
Statistics
Matches: 304, Mismatches: 62, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
25 3 0.01
26 51 0.17
27 245 0.81
28 5 0.02
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:37000525 original size:81 final size:80
Alignment explanation
Indices: 37000382--37000586 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 80
37000372 CTACGCTACA
* * * * * * * * *
37000382 GGGGTATTTCGGTAAATTTGTAAACTAAGGGCATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GGGGTATTTTGGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAACGAGGGATATTTGG
** *
37000447 GTAATTTTATTGATC
66 GTAATTTTATAAACC
*
37000462 GAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAATCGA-GGATATTT
1 G-GGGTATTTTGGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAA-CGAGGGATATTT
37000526 GGGTAATTTTATAAACC
64 GGGTAATTTTATAAACC
* * * *
37000543 GGGGTACTTTGGTAATTTTAC-AACTGGGGGTATTTCAGTAATTT
1 GGGGTATTTTGGTAATTTTGCAAACTGAGGGTATTTCGGTAATTT
37000587 CATAATCGAG
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 21 0.20
80 18 0.17
81 64 0.61
82 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (80 bp):
GGGGTATTTTGGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAACGAGGGATATTTGG
GTAATTTTATAAACC
Found at i:37000773 original size:81 final size:81
Alignment explanation
Indices: 37000590--37000762 Score: 285
Period size: 81 Copynumber: 2.1 Consensus size: 81
37000580 GTAATTTCAT
* *
37000590 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
37000655 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
37000671 AATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAACT-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
* *
37000735 GAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
*
37000752 AATCGATGGTA
1 AATCGAGGGTA
37000763 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
80 1 0.01
81 85 0.99
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:37000775 original size:54 final size:54
Alignment explanation
Indices: 37000590--37000762 Score: 258
Period size: 54 Copynumber: 3.2 Consensus size: 54
37000580 GTAATTTCAT
*
37000590 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTGTA
** * *
37000644 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTA
* *
37000698 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTA
*
37000752 AATCGATGGTA
1 AATCGAGGGTA
37000763 CTTTGGTAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 105 0.99
55 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTA
Found at i:37009027 original size:29 final size:29
Alignment explanation
Indices: 37008994--37009058 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
37008984 AATATGACTG
*
37008994 GGCCTAACAAGCCATATAAATGTGATTTA
1 GGCCTAACAAGCCATATAAAGGTGATTTA
*** * *
37009023 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACAAGCCATATAAAGGTGATTTA
37009052 GGCCTAA
1 GGCCTAA
37009059 TGGGCCATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (29 bp):
GGCCTAACAAGCCATATAAAGGTGATTTA
Found at i:37009059 original size:29 final size:29
Alignment explanation
Indices: 37009004--37009068 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
37008994 GGCCTAACAA
*
37009004 GCCATATAAATGTGATTTAGGCCTAATGG
1 GCCATATAAAGGTGATTTAGGCCTAATGG
* *
37009033 GCCATATACAGGTGATTTGGGCCTAATGG
1 GCCATATAAAGGTGATTTAGGCCTAATGG
37009062 GCCATAT
1 GCCATAT
37009069 GAACATGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (29 bp):
GCCATATAAAGGTGATTTAGGCCTAATGG
Found at i:37012822 original size:27 final size:27
Alignment explanation
Indices: 37012792--37012851 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
37012782 CGCTGCCAAA
*
37012792 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
* * *
37012819 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
37012846 AA-AGTA
1 AACAGTA
37012852 CTTCCTCCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAGT
Found at i:37013018 original size:27 final size:26
Alignment explanation
Indices: 37012988--37013158 Score: 171
Period size: 27 Copynumber: 6.4 Consensus size: 26
37012978 GGCATAATCT
* *
37012988 TCATTTTACCATACAGGGATATTACGG
1 TCATTTTACCCTACAGGG-CATTACGG
** * *
37013015 TCATTTTATTCTATAGGGCATTACGA
1 TCATTTTACCCTACAGGGCATTACGG
* *
37013041 TCATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACA-GGGCATTACGG
*
37013068 TCATTTTACCCTACAAGGGCATTACAG
1 TCATTTTACCCTAC-AGGGCATTACGG
* *
37013095 TCATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACCCTACA-GGGCATTACGG
* * *
37013122 TCATTATACCCTTCTAGGGCATTACAG
1 TCATTTTACCCTAC-AGGGCATTACGG
37013149 TCATTTTACC
1 TCATTTTACC
37013159 TATTTTAGGG
Statistics
Matches: 116, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
26 19 0.16
27 95 0.82
28 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGCATTACGG
Found at i:37013106 original size:54 final size:54
Alignment explanation
Indices: 37012988--37013158 Score: 220
Period size: 54 Copynumber: 3.2 Consensus size: 54
37012978 GGCATAATCT
* * **
37012988 TCATTTTACCATACAGGGATATTACGGTCATTTTATTCTA-TAGGGCATTAC-G
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACTAGGGCATTACAG
* *
37013040 ATCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAAGGGCATTACAG
1 -TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACTAGGGCATTACAG
* * * * *
37013095 TCATTTTACCCTATAGGGGCATTACGATCATTATACCCTTCTAGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACTAGGGCATTACAG
37013149 TCATTTTACC
1 TCATTTTACC
37013159 TATTTTAGGG
Statistics
Matches: 103, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
53 35 0.34
54 67 0.65
55 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACTAGGGCATTACAG
Found at i:37013157 original size:81 final size:80
Alignment explanation
Indices: 37012988--37013158 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 80
37012978 GGCATAATCT
* * ** *
37012988 TCATTTTACCATACAGGGATATTACGGTCATTTTATTCTATAGGGCATTACGATCATTTTACCCT
1 TCATTTTACCATACAGGGACATTACAGTCATTTTACCCTATAGGGCATTACGATCATTATACCCT
* **
37013053 ACAGGGGTATTATGG
66 ACAGGGGCATTACAG
*
37013068 TCATTTTACCCTACAAGGG-CATTACAGTCATTTTACCCTATAGGGGCATTACGATCATTATACC
1 TCATTTTACCATAC-AGGGACATTACAGTCATTTTACCCTATA-GGGCATTACGATCATTATACC
*
37013132 CTTCTA-GGGCATTACAG
64 CTAC-AGGGGCATTACAG
37013149 TCATTTTACC
1 TCATTTTACC
37013159 TATTTTAGGG
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 32 0.41
81 45 0.58
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (80 bp):
TCATTTTACCATACAGGGACATTACAGTCATTTTACCCTATAGGGCATTACGATCATTATACCCT
ACAGGGGCATTACAG
Found at i:37016713 original size:50 final size:50
Alignment explanation
Indices: 37016636--37016865 Score: 225
Period size: 50 Copynumber: 4.6 Consensus size: 50
37016626 ATTGTGAATA
* * *
37016636 CACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCATACTATTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * * ** **
37016686 CGCATGTGTAGAACTAAGTGCAGGCTACTATGCATACTCAATGACT-TCGA-T
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGT
* * * *
37016737 CACTTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGT
* * * *
37016787 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
*
37016836 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
37016866 TGCGTATCAA
Statistics
Matches: 150, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 34 0.23
50 74 0.49
51 33 0.22
52 3 0.02
53 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
Found at i:37024283 original size:101 final size:100
Alignment explanation
Indices: 37024108--37024289 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 100
37024098 ATTGTGAATA
* * *
37024108 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACTAGACTGTGAAGTC-CATGTGTAGTACT
*
37024173 GAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
65 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
* *
37024209 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTA-TCAGA-TGGTGAGGT-CATGTATTTAGT
1 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACT-AGACT-GTGAAGTCCATG--TGTAGT
37024271 ACTAAGTGCAGGCTACTAT
62 ACTAAGTGCAGGCTACTAT
37024290 ATGTATCGGA
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
99 4 0.06
100 2 0.03
101 65 0.92
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (100 bp):
CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACTAGACTGTGAAGTCCATGTGTAGTACTA
AGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
Found at i:37024295 original size:50 final size:48
Alignment explanation
Indices: 37024112--37024338 Score: 163
Period size: 50 Copynumber: 4.6 Consensus size: 48
37024102 TGAATACACG
** * * *
37024112 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTATC-AGA-TGGTAGGTC-CA
* ** * * * *
37024162 TGTGTAGTACTGAGTGCAGGCTACTATGCGTACTCA-ATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTA-TCAGATG--GTAGGTC-CA
* **
37024213 TGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGATGGTGAGGT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTATATGTATCAGATGGT-AGGTCCA
* * * *
37024261 TGTATTTAGTACTAAGTGCAGGCTACTATATGTATCGGATTGTTGGTCGCA
1 TG--TGTAGTACTAAGTGCAGGCTACTATATGTATCAGATGGTAGGTC-CA
37024312 TGTGTAGTACTAAGTGCAGGCTACTAT
1 TGTGTAGTACTAAGTGCAGGCTACTAT
37024339 GCGCATCAGA
Statistics
Matches: 143, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
48 3 0.02
49 30 0.21
50 68 0.48
51 41 0.29
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTATATGTATCAGATGGTAGGTCCA
Found at i:37026097 original size:27 final size:27
Alignment explanation
Indices: 37026067--37026272 Score: 227
Period size: 27 Copynumber: 7.6 Consensus size: 27
37026057 ATATAGAGAT
* *
37026067 ATTACGATCATTTTATCCTACAAGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
*
37026094 ATTAC-AGTCATTTTACCTTACAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGC
* * *
37026121 ATTACGGTCATTTTACCCTACAAGGGT
1 ATTACGATCATTTTACCCTACAGGGGC
* * *
37026148 ATTATGATCATTTTACGCTATAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
*
37026175 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* * *
37026202 ATTATGGTCATTTTACCCTATAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* *
37026229 ATTAC-AGTCATTTTGCCCTATAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGC
* *
37026256 ATTATGGTCATTTTACC
1 ATTACGATCATTTTACC
37026273 TATTTTGGGG
Statistics
Matches: 150, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
ATTACGATCATTTTACCCTACAGGGGC
Found at i:37026104 original size:54 final size:52
Alignment explanation
Indices: 37026046--37026275 Score: 253
Period size: 54 Copynumber: 4.3 Consensus size: 52
37026036 GGGCATAATC
* ** * *
37026046 GTCATTTTACCATATAGAGATATTACGATCATTTTATCCTACAAGGGCATTACA
1 GTCATTTTACC-TATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTA-A
* * *
37026100 GTCATTTTACCTTACAGGGGCATTACGGTCATTTTACCCTACAAGGGTATTAT
1 GTCATTTTACC-TATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTAA
* *
37026153 GATCATTTTACGCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTATG
1 G-TCATTTTAC-CTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTA-A
* * * * *
37026208 GTCATTTTACCCTATAGGGGCATTACAGTCATTTTGCCCTATAGGGGCATTATG
1 GTCATTTTA-CCTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTA-A
37026262 GTCATTTTACCTAT
1 GTCATTTTACCTAT
37026276 TTTGGGGTTT
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
53 6 0.04
54 147 0.94
55 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (52 bp):
GTCATTTTACCTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTAA
Found at i:37026151 original size:81 final size:80
Alignment explanation
Indices: 37026066--37026273 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 80
37026056 CATATAGAGA
* * *
37026066 TATTACGATCATTTTATCCTACAAGGGCATTACAGTCATTTTACCTTACAGGGGCATTACGGTCA
1 TATTACGATCATTTTA-CCTATAGGGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTCA
37026131 TTTTACCCTACAAGGG
65 TTTTACCCTACAAGGG
* * *
37026147 TATTATGATCATTTTACGCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTATGGTCA
1 TATTACGATCATTTTAC-CTATAGGGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTCA
* *
37026212 TTTTACCCTATAGGGG
65 TTTTACCCTACAAGGG
* * *
37026228 CATTAC-AGTCATTTTGCCCTATAGGGGCATTATGGTCATTTTACCT
1 TATTACGA-TCATTTT-ACCTATAGGGGCATTACGGTCATTTTACCT
37026274 ATTTTGGGGT
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.02
81 108 0.97
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (80 bp):
TATTACGATCATTTTACCTATAGGGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTCAT
TTTACCCTACAAGGG
Found at i:37034877 original size:27 final size:27
Alignment explanation
Indices: 37034813--37034869 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
37034803 ATAATCATAC
*
37034813 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATGGGGGCATAACAGTCATTTT
*
37034840 ATCACATGGGGGCATAATAGTCA-TTT
1 ATCACATGGGGGCATAACAGTCATTTT
37034866 ATCA
1 ATCA
37034870 GTTAGGGGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (27 bp):
ATCACATGGGGGCATAACAGTCATTTT
Found at i:37042472 original size:28 final size:28
Alignment explanation
Indices: 37042436--37042537 Score: 143
Period size: 28 Copynumber: 3.6 Consensus size: 28
37042426 CAAATATGGT
37042436 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
*
37042464 ACTTAGTGTACGAAATATTG-GAAATGGC
1 ACTTAGTGTACGAAATATTGAG-AATGAC
* *
37042492 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
37042520 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
37042538 CGAATGATTC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.02
28 64 0.97
29 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:37042510 original size:56 final size:56
Alignment explanation
Indices: 37042431--37042537 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
37042421 GCAATCAAAT
* *
37042431 ATGGTACTTAGTGTACGAAATATTGAGAATGACACTTAGTGTACGAAATATTGGAA
1 ATGGCACTTAGTGTACGAAATATTGAGAATGACACTTAGTGTACAAAATATTGGAA
* * *
37042487 ATGGCACTTAGTGTGCGAGATATTGAGAATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATATTGAGAATGACACTTAGTGTACAAAATAT
37042538 CGAATGATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (56 bp):
ATGGCACTTAGTGTACGAAATATTGAGAATGACACTTAGTGTACAAAATATTGGAA
Found at i:37052246 original size:14 final size:16
Alignment explanation
Indices: 37052222--37052253 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
37052212 ATTTTCTATG
37052222 TTTATTATGTGT-GAA
1 TTTATTATGTGTGGAA
37052237 TTTA-TATGTGTGGAA
1 TTTATTATGTGTGGAA
37052252 TT
1 TT
37052254 GTCATGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (16 bp):
TTTATTATGTGTGGAA
Found at i:37059606 original size:8 final size:9
Alignment explanation
Indices: 37059584--37059611 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
37059574 GAAATTTGAT
37059584 CAAAAATAA
1 CAAAAATAA
37059593 CAAAAATAA
1 CAAAAATAA
37059602 CAAAAATAA
1 CAAAAATAA
37059611 C
1 C
37059612 TGAAGGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.75, C:0.14, G:0.00, T:0.11
Consensus pattern (9 bp):
CAAAAATAA
Found at i:37066894 original size:54 final size:54
Alignment explanation
Indices: 37066827--37066952 Score: 216
Period size: 54 Copynumber: 2.3 Consensus size: 54
37066817 TTTAGTTTAC
37066827 CAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGT
1 CAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGT
* * *
37066881 CAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTGGTTTGT
1 CAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGT
*
37066935 AAAATTACCAAAATACCC
1 CAAATTACCAAAATACCC
37066953 CTAATTTGTG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (54 bp):
CAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGT
Found at i:37066960 original size:27 final size:27
Alignment explanation
Indices: 37066828--37067049 Score: 196
Period size: 27 Copynumber: 8.2 Consensus size: 27
37066818 TTAGTTTACC
* * **
37066828 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
37066855 AAATTACCAAAATACCCCTGGTTTGTC
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
37066882 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
*
37066909 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
37066936 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * **
37066963 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** *
37066990 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
37067017 AAATTACCAAAGTACCCCTAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
37067044 GAATTA
1 AAATTA
37067050 TTATTTTACC
Statistics
Matches: 159, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 5 0.03
27 148 0.93
28 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:37066961 original size:81 final size:81
Alignment explanation
Indices: 37066828--37067040 Score: 259
Period size: 81 Copynumber: 2.6 Consensus size: 81
37066818 TTAGTTTACC
* ** **
37066828 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTCAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTCAAATTACTAAA
**
37066893 ATACCCTTTG-TTTATA
66 ATACCC-TTGACCTATA
* *
37066909 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTCAAATTACTAAA
*
37066974 ATACCCTTGACCTGTA
66 ATACCCTTGACCTATA
** ** *
37066990 AAATTATTAAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCTAATTT
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTAATTT
37067041 ATAGAATTAT
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 7 0.06
81 108 0.94
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTCAAATTACTAAA
ATACCCTTGACCTATA
Found at i:37067059 original size:27 final size:27
Alignment explanation
Indices: 37067052--37067249 Score: 209
Period size: 27 Copynumber: 7.3 Consensus size: 27
37067042 TAGAATTATT
*
37067052 ATTTTACCCTCAATTTTACAAAATTATC
1 ATTTTACCCTCAA-TTTACAAAATTACC
* * * *
37067080 GTTTTACCCTCGATTTATAGAATTACC
1 ATTTTACCCTCAATTTACAAAATTACC
* * *
37067107 GTTTTACCCTAAATTTACAAAATTATC
1 ATTTTACCCTCAATTTACAAAATTACC
* * * * *
37067134 GTTTTACCCTCGATTGA-AGAATTACT
1 ATTTTACCCTCAATTTACAAAATTACC
* * *
37067160 GTTTTACCCTCGATTTACAAAATTACT
1 ATTTTACCCTCAATTTACAAAATTACC
*
37067187 ATTTTACCCTCAATTTACAGAATTACC
1 ATTTTACCCTCAATTTACAAAATTACC
* *
37067214 ATTTTACCCTCGATTTATAAAATTACC
1 ATTTTACCCTCAATTTACAAAATTACC
37067241 ATTTTACCC
1 ATTTTACCC
37067250 CTAGGGTGTT
Statistics
Matches: 144, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
26 22 0.15
27 111 0.77
28 11 0.08
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTCAATTTACAAAATTACC
Found at i:37067146 original size:54 final size:54
Alignment explanation
Indices: 37067037--37067249 Score: 241
Period size: 54 Copynumber: 3.9 Consensus size: 54
37067027 AGTACCCCTA
** * *
37067037 ATTTATAGAATTATTATTTTACCCTCAATTTTACAAAATTATCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCT-AAATTTACAAAATTATCATTTTACCCTCG
* *
37067092 ATTTATAGAATTACCGTTTTACCCTAAATTTACAAAATTATCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTAAATTTACAAAATTATCATTTTACCCTCG
* ** ** *
37067146 ATTGA-AGAATTACTGTTTTACCCTCGATTTACAAAATTA-CTATTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTAAATTTACAAAATTATC-ATTTTACCCTCG
* ** * *
37067199 ATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 ATTTATAGAATTACCATTTTACCCTAAATTTACAAAATTATCATTTTACCC
37067250 CTAGGGTGTT
Statistics
Matches: 141, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
52 1 0.01
53 45 0.32
54 72 0.51
55 23 0.16
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (54 bp):
ATTTATAGAATTACCATTTTACCCTAAATTTACAAAATTATCATTTTACCCTCG
Found at i:37067192 original size:80 final size:80
Alignment explanation
Indices: 37067080--37067228 Score: 226
Period size: 80 Copynumber: 1.9 Consensus size: 80
37067070 CAAAATTATC
* * * * *
37067080 GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTAAATTTACAAAATTATCGTTTTACCCTC
1 GTTTTACCCTCGATTTACAAAATTACCATTTTACCCTAAATTTACAAAATTACCATTTTACCCTC
37067145 GATTGAAGAATTACT
66 GATTGAAGAATTACT
* * *
37067160 GTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACAGAATTACCATTTTACCCTC
1 GTTTTACCCTCGATTTACAAAATTACCATTTTACCCTAAATTTACAAAATTACCATTTTACCCTC
37067225 GATT
66 GATT
37067229 TATAAAATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (80 bp):
GTTTTACCCTCGATTTACAAAATTACCATTTTACCCTAAATTTACAAAATTACCATTTTACCCTC
GATTGAAGAATTACT
Found at i:37067785 original size:6 final size:6
Alignment explanation
Indices: 37067754--37067822 Score: 68
Period size: 6 Copynumber: 11.3 Consensus size: 6
37067744 TTGCATTCAC
* ** *
37067754 ATTCTG ATTTTG ATTCTG TAACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG -ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
37067803 ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
37067823 AATGTTTCTT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
5 1 0.02
6 46 0.88
7 5 0.10
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:37069756 original size:27 final size:27
Alignment explanation
Indices: 37069725--37069946 Score: 282
Period size: 27 Copynumber: 8.2 Consensus size: 27
37069715 TTAGTTTACC
* **
37069725 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
37069752 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
37069779 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37069806 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37069833 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
37069860 AAATTATCAAAATACCCCTAGTTTTTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37069887 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
37069914 AAATTACTAAAATACCCTTGATCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
37069941 AAATTA
1 AAATTA
37069947 TTGAAATACC
Statistics
Matches: 169, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 169 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:37069858 original size:81 final size:79
Alignment explanation
Indices: 37069706--37069984 Score: 317
Period size: 81 Copynumber: 3.5 Consensus size: 79
37069696 TATCCCTGTT
* ** * **
37069706 TAAAATA-CTTTAGTTTACCAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCC
1 TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCAAAATACCCC
*
37069770 TGGTTTGTAAAATTA
65 TGATTTGTAAAATTA
*
37069785 CTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 -TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCAAAATACCC
37069850 CTGATTTGTAAAATTA
64 CTGATTTGTAAAATTA
* * * *
37069866 TCAAAATACCCCTAGTTTTTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCC
1 T-AAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTG-TTTGTAAAATTACCAAAATACCC
* *
37069931 TTGATCTGTAAAATTA
64 CTGATTTGTAAAATTA
* * ** * *
37069947 TTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCC
1 -TAAAATACCCTTAGTTTATAAAATTACCAAAATACCC
37069985 ATAATTTATA
Statistics
Matches: 172, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
80 9 0.05
81 162 0.94
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.32
Consensus pattern (79 bp):
TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGTTTGTAAAATTACCAAAATACCCCT
GATTTGTAAAATTA
Found at i:37069953 original size:27 final size:27
Alignment explanation
Indices: 37069725--37070002 Score: 276
Period size: 27 Copynumber: 10.3 Consensus size: 27
37069715 TTAGTTTACC
* * **
37069725 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
37069752 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
37069779 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
37069806 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
37069833 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
37069860 AAATTATCAAAATACCCCT-AGTTTTTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
37069887 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
37069914 AAATTACTAAAATACCCTTGATCTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*** * *
37069941 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * * *
37069968 AAATTACCAAAGTACCCATAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
37069995 GAATTACC
1 AAATTACC
37070003 GTTTTACCCT
Statistics
Matches: 211, Mismatches: 32, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.02
27 199 0.94
28 7 0.03
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:37070010 original size:27 final size:27
Alignment explanation
Indices: 37069988--37070254 Score: 309
Period size: 27 Copynumber: 9.9 Consensus size: 27
37069978 AGTACCCATA
* * *
37069988 ATTTATAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCG
* *
37070015 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* *** *
37070042 ATTTATAGAATTATTGTTTTACCGTCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
37070069 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* *
37070096 ATTTACAAAATTACCATTTTACCTTCG
1 ATTTACAGAATTACCATTTTACCCTCG
**
37070123 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* *
37070150 ATTGACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
37070177 ATTTACAAAATTACTATTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
37070204 ATTTATAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCG
* *
37070231 ATTTATAAAATTACCATTTTACCC
1 ATTTACAGAATTACCATTTTACCC
37070255 CTAGGGTGTT
Statistics
Matches: 210, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 210 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACCATTTTACCCTCG
Found at i:37070038 original size:81 final size:81
Alignment explanation
Indices: 37069953--37070254 Score: 228
Period size: 81 Copynumber: 3.7 Consensus size: 81
37069943 ATTATTGAAA
* *
37069953 TACCCTCAACTTGTAAAATTACCAAAGTACCCAT-AATTTATAGAATTACCGTTTTACCCTCAAT
1 TACCCTCAACTTATAAAATTACCAAAGTA-CCATCAATTTATAGAATTACCATTTTACCCTCAAT
*
37070017 TTACAAAATTACCGTTT
65 TTACAAAATTACCATTT
* * * ****** * * *
37070034 TACCCTCGATTTATAGAATTATTGTTTTACCGTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCAACTTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCATTTTACCCTCAATT
37070099 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * * * ***** * * * * * *
37070115 TACCTTCGATTTACAGAATTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCCTCGATT
1 TACCCTCAACTTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCATTTTACCCTCAATT
*
37070180 TACAAAATTACTATTT
66 TACAAAATTACCATTT
* * **** * *
37070196 TACCCTCAATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCATTTTACCC
1 TACCCTCAACTTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCATTTTACCC
37070255 CTAGGGTGTT
Statistics
Matches: 188, Mismatches: 32, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 3 0.02
81 185 0.98
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCAACTTATAAAATTACCAAAGTACCATCAATTTATAGAATTACCATTTTACCCTCAATT
TACAAAATTACCATTT
Found at i:37070693 original size:6 final size:6
Alignment explanation
Indices: 37070661--37070723 Score: 67
Period size: 6 Copynumber: 10.3 Consensus size: 6
37070651 TTGCATTCAC
* *
37070661 ATTCTG ATTTTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
37070710 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
37070724 AAAGTTTCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 3 0.06
6 40 0.83
7 4 0.08
8 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:37074142 original size:20 final size:20
Alignment explanation
Indices: 37074113--37074157 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
37074103 AGCACATGTA
* *
37074113 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAAATT
*
37074133 TTCATCAAATTTTACAAATT
1 TTCATAAAATTTTACAAATT
37074153 TTCAT
1 TTCAT
37074158 TTTACTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:37078715 original size:14 final size:13
Alignment explanation
Indices: 37078692--37078723 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
37078682 GGGATATCAA
37078692 AACAATAATTAAG
1 AACAATAATTAAG
37078705 AACACATAATTAAG
1 AACA-ATAATTAAG
37078719 AACAA
1 AACAA
37078724 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:37082273 original size:35 final size:36
Alignment explanation
Indices: 37082205--37082324 Score: 108
Period size: 35 Copynumber: 3.4 Consensus size: 36
37082195 CATTTTTAAG
* * *
37082205 ATAA-CTTCACATAT-ATCTGAGTATACAATTTCAAT
1 ATAAGCTTCACATGTAATC-GAATATACAAATTCAAT
*
37082240 ATAAG-TTCACATGTAATCGAATACTA-AAATTCAAC
1 ATAAGCTTCACATGTAATCGAATA-TACAAATTCAAT
* * * *
37082275 AT-AGCCTCACATGCAGTCGAATATACAAGTTCAAT
1 ATAAGCTTCACATGTAATCGAATATACAAATTCAAT
37082310 ATAAGCTT-ACATGTA
1 ATAAGCTTCACATGTA
37082325 CTTACCTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
34 4 0.06
35 55 0.81
36 9 0.13
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (36 bp):
ATAAGCTTCACATGTAATCGAATATACAAATTCAAT
Found at i:37085905 original size:29 final size:27
Alignment explanation
Indices: 37085887--37085959 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
37085877 ATATTAAGTC
37085887 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37085914 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *
37085942 CGCGCACTTAGTGCTATA
1 CGCACACTCAGTGCTATA
37085960 CAATTTAAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 22 0.51
28 21 0.49
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37085950 original size:28 final size:28
Alignment explanation
Indices: 37085887--37085984 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37085877 ATATTAAGTC
*
37085887 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37085914 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37085942 CGCGCACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37085971 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37085985 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37093903 original size:18 final size:18
Alignment explanation
Indices: 37093868--37093934 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
37093858 GCCTAATTCG
* *
37093868 GTAATAGTAAATATTGCA
1 GTAATAGTAAACAATGCA
*
37093886 GTAATATTAAACAATGCA
1 GTAATAGTAAACAATGCA
*
37093904 AT-ATCAGTAAACAATGCA
1 GTAAT-AGTAAACAATGCA
37093922 GT-ATCAGTAAACA
1 GTAAT-AGTAAACA
37093935 GTATGCAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
17 2 0.05
18 40 0.95
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (18 bp):
GTAATAGTAAACAATGCA
Found at i:37094306 original size:27 final size:27
Alignment explanation
Indices: 37094260--37094443 Score: 185
Period size: 27 Copynumber: 6.8 Consensus size: 27
37094250 AAACATACAT
* *
37094260 CACATAGGGGCAAAACAGTCATCTGAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* * * *
37094287 CATATAAGGGCAATATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* **
37094314 TACATAAGGGCAAAACAACCAT-TCTAC
1 CACATAAGGGCAAAACAGTCATCT-TAC
*
37094341 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* **
37094368 CACATAAGGGCAAAATAGTTGT-TCTAC
1 CACATAAGGGCAAAACAGTCATCT-TAC
*
37094395 CACATAAGGGCAAAACAATCA-CTTTAC
1 CACATAAGGGCAAAACAGTCATC-TTAC
*
37094422 CACATAAGGGCAAAATAGTCAT
1 CACATAAGGGCAAAACAGTCAT
37094444 TTCATCAAAT
Statistics
Matches: 127, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
26 2 0.02
27 123 0.97
28 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATCTTAC
Found at i:37094326 original size:54 final size:53
Alignment explanation
Indices: 37094260--37094443 Score: 224
Period size: 54 Copynumber: 3.4 Consensus size: 53
37094250 AAACATACAT
* * * *
37094260 CACATAGGGGCAAAACAGTCATCTGACCATATAAGGGCAATATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCT-ACCACATAAGGGCAAAACAGTCATTTTAC
* **
37094314 TACATAAGGGCAAAACAACCATTCTACCACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCA-TCTACCACATAAGGGCAAAACAGTCATTTTAC
* ** * *
37094368 CACATAAGGGCAAAATAGTTGTTCTACCACATAAGGGCAAAACAATCACTTTAC
1 CACATAAGGGCAAAACAG-TCATCTACCACATAAGGGCAAAACAGTCATTTTAC
*
37094422 CACATAAGGGCAAAATAGTCAT
1 CACATAAGGGCAAAACAGTCAT
37094444 TTCATCAAAT
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.02
54 106 0.95
55 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (53 bp):
CACATAAGGGCAAAACAGTCATCTACCACATAAGGGCAAAACAGTCATTTTAC
Found at i:37094400 original size:81 final size:81
Alignment explanation
Indices: 37094260--37094445 Score: 257
Period size: 81 Copynumber: 2.3 Consensus size: 81
37094250 AAACATACAT
* * * * * *
37094260 CACATAGGGGCAAAACAGTCATCTGACCATATAAGGGCAATATAGTCATTTTACTACATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTGACCACATAAGGGCAAAATAGTCATTCTACCACATAAGGGC
37094325 AAAACAACCA-TTCTAC
66 AAAACAACCACTT-TAC
* **
37094341 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTTGTTCTACCACATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTGACCACATAAGGGCAAAATAGTCATTCTACCACATAAGGGC
*
37094406 AAAACAATCACTTTAC
66 AAAACAACCACTTTAC
*
37094422 CACATAAGGGCAAAATAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
37094446 CATCAAATTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 91 0.98
82 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.23
Consensus pattern (81 bp):
CACATAAGGGCAAAACAGTCATTTGACCACATAAGGGCAAAATAGTCATTCTACCACATAAGGGC
AAAACAACCACTTTAC
Found at i:37094592 original size:17 final size:17
Alignment explanation
Indices: 37094559--37094596 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
37094549 AAGCCTATAA
37094559 CACAGCCCATGTGGGCC
1 CACAGCCCATGTGGGCC
*
37094576 CACATGCCCGTGT-GGCC
1 CACA-GCCCATGTGGGCC
37094593 CACA
1 CACA
37094597 AAGCCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.18, C:0.42, G:0.26, T:0.13
Consensus pattern (17 bp):
CACAGCCCATGTGGGCC
Found at i:37094602 original size:18 final size:18
Alignment explanation
Indices: 37094562--37094603 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
37094552 CCTATAACAC
37094562 AGCCCATGTGGGCCCACA
1 AGCCCATGTGGGCCCACA
* *
37094580 TGCCCGTGT-GGCCCACAA
1 AGCCCATGTGGGCCCAC-A
37094598 AGCCCA
1 AGCCCA
37094604 AAAAATAGCC
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.21, C:0.40, G:0.26, T:0.12
Consensus pattern (18 bp):
AGCCCATGTGGGCCCACA
Found at i:37100867 original size:53 final size:53
Alignment explanation
Indices: 37100804--37100908 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
37100794 TTTCCTTTTA
* * * * *
37100804 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
37100857 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
37100909 CGTAGTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:37106692 original size:21 final size:21
Alignment explanation
Indices: 37106668--37106737 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
37106658 TGATCTAAAC
37106668 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* *
37106689 TCA-TGACTTATGTGACATCTGA-T
1 TCATTGA-GT-TGTG--GTCTGAGT
37106712 CTCATTGAGTTGTGGTCTGAGT
1 -TCATTGAGTTGTGGTCTGAGT
37106734 TCAT
1 TCAT
37106738 GATGTATGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 3 0.08
21 13 0.34
22 5 0.13
23 5 0.13
24 9 0.24
25 3 0.08
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:37115579 original size:55 final size:53
Alignment explanation
Indices: 37115436--37115643 Score: 222
Period size: 55 Copynumber: 3.8 Consensus size: 53
37115426 ATCCTTTTGA
* * * *
37115436 AACTTACCATTCCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG
* * * *
37115489 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGG-GGCCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCC-TTGCCTTAT-G
* * *
37115543 TAACTTACCAGTGCCATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG
* * *
37115596 AAACCTTACCAATTTCCATGCCTTGACATGGTCTTACATGGTATCCTT
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTAGCCTT
37115644 AAGCCCTACT
Statistics
Matches: 129, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 8 0.06
55 73 0.57
56 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG
Found at i:37115582 original size:108 final size:110
Alignment explanation
Indices: 37115436--37115636 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
37115426 ATCCTTTTGA
* *
37115436 AACTTACCATTCCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAGTCCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
37115499 -TGCCATGCCTTGGCATGGTCTTACATGGGGCCTTTGCCTTATAGT
65 TTGCCATGCCTTGACATGGTCTTACATGGGGCCTTTGCCTTATAGT
* * *
37115544 AACTTACCAGTGCCATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAGTCCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
*
37115609 TTCCATGCCTTGACATGGTCTTACATGG
66 TGCCATGCCTTGACATGGTCTTACATGG
37115637 TATCCTTAAG
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 7 0.08
110 26 0.31
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAGTCCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGACATGGTCTTACATGGGGCCTTTGCCTTATAGT
Found at i:37122726 original size:16 final size:16
Alignment explanation
Indices: 37122707--37122737 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37122697 CTTCTTCACT
37122707 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37122723 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37122738 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37122743 original size:20 final size:20
Alignment explanation
Indices: 37122704--37122743 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37122694 AAACTTCTTC
* *
37122704 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
37122724 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37122744 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37123103 original size:55 final size:54
Alignment explanation
Indices: 37122913--37123164 Score: 261
Period size: 55 Copynumber: 4.7 Consensus size: 54
37122903 ACAATCGTAC
* * * * *
37122913 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
37122962 CTTACCATTGCCATGTCC-CGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATG-CCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * *
37123015 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * *
37123070 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
37123123 CTTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATC
1 C-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATC
37123165 TTTAAACCCT
Statistics
Matches: 170, Mismatches: 20, Indels: 20
0.81 0.10 0.10
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 6 0.04
53 44 0.26
54 7 0.04
55 73 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:37123104 original size:108 final size:110
Alignment explanation
Indices: 37122960--37123160 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
37122950 ATCCTTTTGA
*
37122960 AACTTACCATTGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTATG-AAC-TCACCAA
1 AACTTACCAATGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACTTCACCAA
37123023 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
37123068 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTTACCAAT
1 AACTTACCAATGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTCACCAAT
*
37123133 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
37123161 TATCTTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 50 0.60
109 6 0.07
110 27 0.32
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:37123539 original size:30 final size:30
Alignment explanation
Indices: 37123503--37123559 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
37123493 GTCCTTGACT
*
37123503 TAAACTTTGGCAAATTTACACTTTTGCACC
1 TAAACTTTGACAAATTTACACTTTTGCACC
* *
37123533 TAAACTTTTACATATTTACACTTTTGC
1 TAAACTTTGACAAATTTACACTTTTGC
37123560 CCCAAGGCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (30 bp):
TAAACTTTGACAAATTTACACTTTTGCACC
Found at i:37137906 original size:27 final size:27
Alignment explanation
Indices: 37137860--37138078 Score: 201
Period size: 27 Copynumber: 8.1 Consensus size: 27
37137850 TTACCCTATA
* *
37137860 GGGGTATTTCGTTAAATTTACACAACA-
1 GGGGTATTTCGGTAATTTTACA-AACAG
* *
37137887 AGGGTATTTAGGTAATTTTACAAACTA-
1 GGGGTATTTCGGTAATTTTACAAAC-AG
* ** ***
37137914 GGGGTACTTCAATAATTTTACAATTTG
1 GGGGTATTTCGGTAATTTTACAAACAG
* * *
37137941 GGGTTATTTCAGTAATTTTACAAATAG
1 GGGGTATTTCGGTAATTTTACAAACAG
37137968 GGGGTATTTCGGTAATTTTACAAACAG
1 GGGGTATTTCGGTAATTTTACAAACAG
* *
37137995 AGGGTATTTCGGTAATTTTACAAATAG
1 GGGGTATTTCGGTAATTTTACAAACAG
*
37138022 GGGGCATTTCGGTAATTTTACAAATCA-
1 GGGGTATTTCGGTAATTTTACAAA-CAG
** **
37138049 GATGTATTTCAATAATTTTACAAACTAG
1 GGGGTATTTCGGTAATTTTACAAAC-AG
37138077 GG
1 GG
37138079 TCTTAACGAC
Statistics
Matches: 156, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
26 4 0.03
27 150 0.96
28 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAACAG
Found at i:37137916 original size:54 final size:52
Alignment explanation
Indices: 37137857--37138078 Score: 223
Period size: 54 Copynumber: 4.1 Consensus size: 52
37137847 ATTTTACCCT
* *
37137857 ATAGGGGTATTTCGTTAAATTTACACAACAAGGGTATTT-AGGTAATTTTACAA
1 ATAGGGGTATTTCGGTAATTTTACA-AACAAGGGTATTTCA-GTAATTTTACAA
* ** ****
37137910 ACTAGGGGTACTTCAATAATTTTACAATTTGGGGTTATTTCAGTAATTTTACAA
1 A-TAGGGGTATTTCGGTAATTTTACAAACAAGGG-TATTTCAGTAATTTTACAA
*
37137964 ATAGGGGGTATTTCGGTAATTTTACAAACAGAGGGTATTTCGGTAATTTTACAA
1 ATA-GGGGTATTTCGGTAATTTTACAAACA-AGGGTATTTCAGTAATTTTACAA
* * *
37138018 ATAGGGGGCATTTCGGTAATTTTACAAATC-AGATGTATTTCAATAATTTTACAA
1 ATA-GGGGTATTTCGGTAATTTTACAAA-CAAG-GGTATTTCAGTAATTTTACAA
37138072 ACTAGGG
1 A-TAGGG
37138079 TCTTAACGAC
Statistics
Matches: 141, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
53 9 0.06
54 125 0.89
55 7 0.05
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.36
Consensus pattern (52 bp):
ATAGGGGTATTTCGGTAATTTTACAAACAAGGGTATTTCAGTAATTTTACAA
Found at i:37137982 original size:81 final size:81
Alignment explanation
Indices: 37137888--37138078 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 81
37137878 TACACAACAA
* * * **
37137888 GGGTATTTAGGTAATTTTACAAACTAGGGGTACTTCAATAATTTTACAATTTGGGGTTATTTCAG
1 GGGTATTTCGGTAATTTTACAAACTAGGGGTACTTCAATAATTTTACAAATAGGGGGCATTTCAG
37137953 TAATTTTACAAAT-AGG
66 TAATTTTACAAATCA-G
* ** *
37137969 GGGTATTTCGGTAATTTTACAAAC-AGAGGGTATTTCGGTAATTTTACAAATAGGGGGCATTTCG
1 GGGTATTTCGGTAATTTTACAAACTAG-GGGTACTTCAATAATTTTACAAATAGGGGGCATTTCA
37138033 GTAATTTTACAAATCAG
65 GTAATTTTACAAATCAG
** **
37138050 ATGTATTTCAATAATTTTACAAACTAGGG
1 GGGTATTTCGGTAATTTTACAAACTAGGG
37138079 TCTTAACGAC
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 2 0.02
81 89 0.95
82 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAACTAGGGGTACTTCAATAATTTTACAAATAGGGGGCATTTCAG
TAATTTTACAAATCAG
Found at i:37138182 original size:29 final size:29
Alignment explanation
Indices: 37138149--37138214 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
37138139 CATAACGGTG
*
37138149 CAAGTGGGCCTAAGGCCTATTAATTTTCC
1 CAAGTGGGCCTAAGGCCTATTAATTTGCC
*
37138178 CAAGTGGGCCTAAGGCCTATTACTTTGCC
1 CAAGTGGGCCTAAGGCCTATTAATTTGCC
37138207 CAAGTGGG
1 CAAGTGGG
37138215 TCCACAGGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (29 bp):
CAAGTGGGCCTAAGGCCTATTAATTTGCC
Found at i:37151362 original size:93 final size:93
Alignment explanation
Indices: 37151229--37151400 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
37151219 GCCCATAAGT
* *
37151229 GAACTCGGACTCAAATCAACGAGCTCAGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
37151294 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
37151322 GAACTCGGACTCAACTCAACGAGTTC-GGATATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
37151386 ACTAGTTCGGATGCC
65 ACGAGTTCGGATGCC
37151401 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37151393 original size:46 final size:46
Alignment explanation
Indices: 37151221--37151397 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
37151211 TGTAACCTGC
* * * ** *
37151221 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCAGG-CGTTCGTAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GGATATTCGCAT
*
37151267 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA----TA-TTCGCAT
* * *
37151317 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATATTCGCAT
*
37151360 CCATAAGTGAACTCAGACTCAACTCAACTAGTTCGGAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGAT
37151398 GCCCAAATAT
Statistics
Matches: 106, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 4 0.04
46 59 0.56
47 28 0.26
48 2 0.02
49 1 0.01
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATATTCGCAT
Found at i:37151415 original size:46 final size:46
Alignment explanation
Indices: 37151264--37151415 Score: 123
Period size: 46 Copynumber: 3.3 Consensus size: 46
37151254 CAGGCGTTCG
* *
37151264 TATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAG
1 TATCC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAA
* * * *** *
37151311 T-TACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTC-G
1 TAT-C--CTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAA
* *
37151357 CATCCATAAGTGAACTCAGACTCAACTCAACTAGTTCGGATGCCCAAA
1 TATCC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCC-AA
37151405 TATCCT-AGTGA
1 TATCCTAAGTGA
37151416 CATGTCACTT
Statistics
Matches: 80, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
44 1 0.01
45 2 0.03
46 37 0.46
47 33 0.41
48 6 0.08
49 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (46 bp):
TATCCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAA
Found at i:37166775 original size:27 final size:28
Alignment explanation
Indices: 37166745--37166877 Score: 145
Period size: 27 Copynumber: 5.0 Consensus size: 28
37166735 GTATTTCAGT
37166745 TATTTCGATAATTTTACAAATC-GGGGG
1 TATTTCGATAATTTTACAAATCTGGGGG
* * *
37166772 TATTTCTATAATTTTAC-AATCTAGTGG
1 TATTTCGATAATTTTACAAATCTGGGGG
* **
37166799 TATTTCGGTAATTTTA-AAA-CTGAAGG
1 TATTTCGATAATTTTACAAATCTGGGGG
37166825 TATTTC-AGTAATTTTACAAA-CTGGGGG
1 TATTTCGA-TAATTTTACAAATCTGGGGG
*
37166852 TATTTCGGTAATTTTACAAATC-GGGG
1 TATTTCGATAATTTTACAAATCTGGGG
37166878 CTTTAATAAC
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
26 22 0.25
27 65 0.74
28 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (28 bp):
TATTTCGATAATTTTACAAATCTGGGGG
Found at i:37167076 original size:19 final size:19
Alignment explanation
Indices: 37167041--37167078 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37167031 TGTGTGGGCC
*
37167041 CATGAGCCCATTGGGCCCA
1 CATGAGCCCATGGGGCCCA
37167060 CATGA-CCCATGGAGGCCCA
1 CATGAGCCCATGG-GGCCCA
37167079 AAACAGTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.24, C:0.37, G:0.26, T:0.13
Consensus pattern (19 bp):
CATGAGCCCATGGGGCCCA
Found at i:37188901 original size:38 final size:38
Alignment explanation
Indices: 37188850--37188935 Score: 145
Period size: 38 Copynumber: 2.3 Consensus size: 38
37188840 ATATTTGATG
* *
37188850 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
37188888 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
*
37188926 TATATTCGGG
1 TATATCCGGG
37188936 CCTTTGAGCC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
Found at i:37188990 original size:45 final size:45
Alignment explanation
Indices: 37188928--37189145 Score: 291
Period size: 45 Copynumber: 4.9 Consensus size: 45
37188918 GCTGGTATTA
* * * *
37188928 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
37188973 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
37189018 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
37189063 TATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
37189108 TAATCGGGCCTCT-AGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
37189146 TTTGAGAAAA
Statistics
Matches: 157, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
43 12 0.08
44 16 0.10
45 125 0.80
46 4 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:37192151 original size:17 final size:17
Alignment explanation
Indices: 37192129--37192267 Score: 58
Period size: 17 Copynumber: 7.9 Consensus size: 17
37192119 AATAGAAATA
37192129 AATATATATATAATAAT
1 AATATATATATAATAAT
*
37192146 AATATATAAAT-AT-A-
1 AATATATATATAATAAT
37192160 AATATA-ATATTAATATAT
1 AATATATATA-TAATA-AT
* *
37192178 AA-ATATA-AAATATAAA
1 AATATATATATA-ATAAT
* * * *
37192194 AATATATAAAATATTTAG
1 AATATAT-ATATAATAAT
37192212 AATATATATAATAA-AAT
1 AATATATAT-ATAATAAT
37192229 AGATATAATATATAAATAAATT
1 A-ATAT-ATATAT-AAT-AA-T
37192251 GAATATAATATATAATA
1 -AATAT-ATATATAATA
37192268 TTAAATAGAT
Statistics
Matches: 92, Mismatches: 12, Indels: 33
0.67 0.09 0.24
Matches are distributed among these distances:
13 2 0.02
14 7 0.08
15 3 0.03
16 6 0.07
17 25 0.27
18 22 0.24
19 8 0.09
20 1 0.01
21 5 0.05
22 12 0.13
23 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
AATATATATATAATAAT
Found at i:37192154 original size:25 final size:25
Alignment explanation
Indices: 37192126--37192283 Score: 122
Period size: 25 Copynumber: 6.6 Consensus size: 25
37192116 AAAAATAGAA
37192126 ATAAATATATATATAATAATAATAT
1 ATAAATATATATATAATAATAATAT
* *
37192151 ATAAATATAAATATAATATTAATAT
1 ATAAATATATATATAATAATAATAT
* *
37192176 ATAAATATA-AAAT-ATAAAAATAT
1 ATAAATATATATATAATAATAATAT
* *
37192199 ATAAA-ATATTTAGAAT-AT-ATAT
1 ATAAATATATATATAATAATAATAT
* *
37192221 AATAAA-ATAGATATAAT-AT-ATAA
1 -ATAAATATATATATAATAATAATAT
37192244 ATAAAT-TGA-ATATAATATATAATAT
1 ATAAATAT-ATATATAATA-ATAATAT
* *
37192269 -TAAATAGATAAATAA
1 ATAAATATATATATAA
37192284 ATTAAACCAA
Statistics
Matches: 107, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
22 20 0.19
23 34 0.32
24 13 0.12
25 40 0.37
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (25 bp):
ATAAATATATATATAATAATAATAT
Found at i:37192158 original size:19 final size:20
Alignment explanation
Indices: 37192126--37192274 Score: 111
Period size: 19 Copynumber: 7.7 Consensus size: 20
37192116 AAAAATAGAA
*
37192126 ATAA-ATATATATATAATA-
1 ATAATATATAAATATAATAT
37192144 ATAATATATAAATATAA-AT
1 ATAATATATAAATATAATAT
37192163 ATAATAT-TAATATATAA-AT
1 ATAATATATAA-ATATAATAT
* *
37192182 ATAAAATATAAAAAT-ATAT
1 ATAATATATAAATATAATAT
* *
37192201 AAAATATTTAGAATAT-ATAT
1 ATAATATATA-AATATAATAT
*
37192221 AATAA-A-ATAGATATAATAT
1 -ATAATATATAAATATAATAT
* *
37192240 ATAAATAAATTGAATATAATAT
1 AT-AATATA-TAAATATAATAT
37192262 ATAATAT-TAAATA
1 ATAATATATAAATA
37192275 GATAAATAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 23
0.74 0.10 0.16
Matches are distributed among these distances:
18 15 0.14
19 57 0.54
20 13 0.12
21 8 0.08
22 12 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
ATAATATATAAATATAATAT
Found at i:37192256 original size:22 final size:22
Alignment explanation
Indices: 37192102--37192282 Score: 112
Period size: 22 Copynumber: 8.4 Consensus size: 22
37192092 TTTGTATTGT
*
37192102 ATATAATGTATACAA-AAAATAG
1 ATATAATATATA-AATAAAATAG
* * *
37192124 AAATAA-ATATATATATAAT--
1 ATATAATATATAAATAAAATAG
*
37192143 A-ATAATATATAAATATAAATATA
1 ATATAATATATAAATA-AAATA-G
*
37192166 ATATTAATATATAAATATAA-A-
1 ATA-TAATATATAAATAAAATAG
* * *
37192187 ATATAA-AAATATATAAAATAT
1 ATATAATATATAAATAAAATAG
* *
37192208 TTAGAATATATATAATAAAATAG
1 ATATAATATATA-AATAAAATAG
*
37192231 ATATAATATATAAAT-AAATTG
1 ATATAATATATAAATAAAATAG
*
37192252 AATATAATATATAATATTAAATAG
1 -ATATAATATATAA-ATAAAATAG
37192276 ATA-AATA
1 ATATAATA
37192283 AATTAAACCA
Statistics
Matches: 125, Mismatches: 19, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
18 4 0.03
19 18 0.14
20 8 0.06
21 20 0.16
22 29 0.23
23 25 0.20
24 8 0.06
25 13 0.10
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (22 bp):
ATATAATATATAAATAAAATAG
Found at i:37192261 original size:45 final size:44
Alignment explanation
Indices: 37192144--37192282 Score: 128
Period size: 45 Copynumber: 3.1 Consensus size: 44
37192134 ATATATAATA
*
37192144 ATAATATATAAATATAAATATAATATTAATATATAAATATAAAATATA-
1 ATAATATAT-AA-ATAAAT-TAATA-TAATATAT-AATATAAAATAGAT
* * *
37192192 AAAATATATAAA-ATATT--TAGAATATAT-ATAATAAAATAGAT
1 ATAATATATAAATAAATTAATATAATATATAAT-ATAAAATAGAT
*
37192233 ATAATATATAAATAAATTGAATATAATATATAATATTAAATAGAT
1 ATAATATATAAATAAATT-AATATAATATATAATATAAAATAGAT
37192278 A-AATA
1 ATAATA
37192283 AATTAAACCA
Statistics
Matches: 76, Mismatches: 8, Indels: 18
0.75 0.08 0.18
Matches are distributed among these distances:
39 2 0.03
40 9 0.12
41 18 0.24
42 6 0.08
44 5 0.07
45 23 0.30
46 3 0.04
47 2 0.03
48 8 0.11
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (44 bp):
ATAATATATAAATAAATTAATATAATATATAATATAAAATAGAT
Found at i:37192289 original size:17 final size:16
Alignment explanation
Indices: 37192235--37192289 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 16
37192225 AAATAGATAT
37192235 AATATATAAATAAATTGA
1 AATA-ATAAATAAATT-A
*
37192253 ATATAATATATAATATTA
1 A-ATAATAAATAA-ATTA
37192271 AATAGATAAATAAATTA
1 AATA-ATAAATAAATTA
37192288 AA
1 AA
37192290 CCAAAAGAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
17 9 0.28
18 17 0.53
19 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (16 bp):
AATAATAAATAAATTA
Found at i:37192917 original size:12 final size:12
Alignment explanation
Indices: 37192900--37192924 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37192890 ATTTTATAAC
37192900 ATAAATATTGTT
1 ATAAATATTGTT
37192912 ATAAATATTGTT
1 ATAAATATTGTT
37192924 A
1 A
37192925 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:37195384 original size:25 final size:25
Alignment explanation
Indices: 37195356--37195497 Score: 105
Period size: 25 Copynumber: 5.7 Consensus size: 25
37195346 AAAAATAGAA
37195356 ATAAATATATATATAATAATAATAT
1 ATAAATATATATATAATAATAATAT
* * *
37195381 ATAAATATAAAAATAATATTAATAT
1 ATAAATATATATATAATAATAATAT
* * *
37195406 ATAAATATAAAAAT-ATAAAAATAT
1 ATAAATATATATATAATAATAATAT
* *
37195430 ATAAA-ATATTTAGAAT-AT-ATAT
1 ATAAATATATATATAATAATAATAT
* *
37195452 AATAAA-ATAGATATAATATATAAATAA
1 -ATAAATATATATATAATA-AT-AATAT
*
37195479 ATTGAATATAATATATAAT
1 A-TAAATAT-ATATATAAT
37195498 TTTAAATAGA
Statistics
Matches: 92, Mismatches: 16, Indels: 14
0.75 0.13 0.11
Matches are distributed among these distances:
22 4 0.04
23 18 0.20
24 15 0.16
25 38 0.41
26 1 0.01
27 6 0.07
28 2 0.02
29 8 0.09
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAAATATATATATAATAATAATAT
Found at i:37195389 original size:8 final size:8
Alignment explanation
Indices: 37195356--37195477 Score: 97
Period size: 8 Copynumber: 14.9 Consensus size: 8
37195346 AAAAATAGAA
37195356 ATAAATAT
1 ATAAATAT
*
37195364 ATATATA-
1 ATAAATAT
37195371 ATAATAATAT
1 AT-A-AATAT
37195381 ATAAATAT
1 ATAAATAT
*
37195389 AAAAATAAT
1 ATAAAT-AT
*
37195398 ATTAATAT
1 ATAAATAT
37195406 ATAAATAT
1 ATAAATAT
*
37195414 AAAAATAT
1 ATAAATAT
*
37195422 AAAAATAT
1 ATAAATAT
37195430 ATAAAATAT
1 AT-AAATAT
*
37195439 TTAGAATAT
1 ATA-AATAT
*
37195448 ATATA-AT
1 ATAAATAT
*
37195455 A-AAATAG
1 ATAAATAT
37195462 ATATAATAT
1 ATA-AATAT
37195471 ATAAATA
1 ATAAATA
37195478 AATTGAATAT
Statistics
Matches: 91, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
6 2 0.02
7 7 0.08
8 49 0.54
9 31 0.34
10 2 0.02
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (8 bp):
ATAAATAT
Found at i:37195487 original size:22 final size:22
Alignment explanation
Indices: 37195332--37195513 Score: 105
Period size: 23 Copynumber: 8.4 Consensus size: 22
37195322 TTTGTATTGT
*
37195332 ATATAATGTATACAA-AAAATAG
1 ATATAATATATA-AATAAAATAG
* *
37195354 AAATAAATATATATATAATAATA-
1 ATAT-AATATATAAATAA-AATAG
* *
37195377 ATAT-ATAAATATA-AAAATA-
1 ATATAATATATAAATAAAATAG
37195396 ATATTAATATATAAATATAAA-A-
1 ATA-TAATATATAAATA-AAATAG
* * *
37195418 ATATAA-AAATATATAAAATAT
1 ATATAATATATAAATAAAATAG
* *
37195439 TTAGAATATATATAATAAAATAG
1 ATATAATATATA-AATAAAATAG
*
37195462 ATATAATATATAAAT-AAATTG
1 ATATAATATATAAATAAAATAG
* *
37195483 AATATAATATATAATTTTAAATAG
1 -ATATAATATATAA-ATAAAATAG
37195507 ATA-AATA
1 ATATAATA
37195514 AATTAAACCA
Statistics
Matches: 127, Mismatches: 19, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
19 10 0.08
20 11 0.09
21 27 0.21
22 33 0.26
23 37 0.29
24 9 0.07
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (22 bp):
ATATAATATATAAATAAAATAG
Found at i:37195514 original size:18 final size:17
Alignment explanation
Indices: 37195466--37195517 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
37195456 AAATAGATAT
37195466 AATATATAAATAAATTGA
1 AATA-ATAAATAAATTGA
* * *
37195484 ATATAATATATAATTTTA
1 A-ATAATAAATAAATTGA
37195502 AATAGATAAATAAATT
1 AATA-ATAAATAAATT
37195518 AAACCAAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 21 0.78
19 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (17 bp):
AATAATAAATAAATTGA
Found at i:37207539 original size:49 final size:49
Alignment explanation
Indices: 37207462--37207572 Score: 177
Period size: 49 Copynumber: 2.3 Consensus size: 49
37207452 TTTAGTTGGA
* * *
37207462 TAATTATTGTACGATGATAGCACTAATTCAAGAAGCAAGGACTAGGAGC
1 TAATCATTATACGATGATAGCACCAATTCAAGAAGCAAGGACTAGGAGC
* *
37207511 TAATCATTATACGATGATAGCACCAATTCAAGAAGCAGGGGCTAGGAGC
1 TAATCATTATACGATGATAGCACCAATTCAAGAAGCAAGGACTAGGAGC
37207560 TAATCATTATACG
1 TAATCATTATACG
37207573 GATTTTTGGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (49 bp):
TAATCATTATACGATGATAGCACCAATTCAAGAAGCAAGGACTAGGAGC
Found at i:37240107 original size:16 final size:17
Alignment explanation
Indices: 37240088--37240126 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
37240078 CTTTATTCAC
37240088 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
37240104 TTAATATAATTATAATA
1 TTAATATAATTATAATA
37240121 -TAATAT
1 TTAATAT
37240127 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:37241508 original size:15 final size:15
Alignment explanation
Indices: 37241488--37241518 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37241478 AAATATGAAA
37241488 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
37241503 GATATGTTTTGTATT
1 GATATGTTTTGGATT
37241518 G
1 G
37241519 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:37241572 original size:22 final size:22
Alignment explanation
Indices: 37241547--37241590 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
37241537 AGTAATCAGG
37241547 ACTAAATTGCAAAAATAATAAA
1 ACTAAATTGCAAAAATAATAAA
37241569 ACTAAATTGCAAAAATAATAAA
1 ACTAAATTGCAAAAATAATAAA
37241591 TTGAGGGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.05, T:0.23
Consensus pattern (22 bp):
ACTAAATTGCAAAAATAATAAA
Found at i:37242205 original size:45 final size:45
Alignment explanation
Indices: 37242119--37242205 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
37242109 TAGGATCTGA
* * ** * *
37242119 TATGTGTTTTCGTGTAAAACCATGTCTGGGATGTTGGCATCGATG
1 TATGTGGTTACGTGTAAAACCATGTCTGGGACATCGACATCGATG
*
37242164 TATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACATCG
1 TATGTGGTTACGTGTAAAACCATGTCTGGGACATCGACATCG
37242206 TATTAGATTC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (45 bp):
TATGTGGTTACGTGTAAAACCATGTCTGGGACATCGACATCGATG
Found at i:37248729 original size:14 final size:15
Alignment explanation
Indices: 37248699--37248732 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
37248689 TATTCTAAAC
37248699 TTATACTTATATATA
1 TTATACTTATATATA
*
37248714 TTATAGTTAT-TATA
1 TTATACTTATATATA
37248728 TTATA
1 TTATA
37248733 ATATAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
TTATACTTATATATA
Found at i:37274203 original size:20 final size:21
Alignment explanation
Indices: 37274165--37274205 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
37274155 CTTGTATAAC
37274165 TATCATCAAACATTCAAAATA
1 TATCATCAAACATTCAAAATA
37274186 TATCATCAAACA-TCAAAATA
1 TATCATCAAACATTCAAAATA
37274206 CTCATGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.27
Consensus pattern (21 bp):
TATCATCAAACATTCAAAATA
Found at i:37276940 original size:46 final size:46
Alignment explanation
Indices: 37276873--37277047 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
37276863 TGTAACCCGC
37276873 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
37276919 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * *
37276969 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
37277012 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
37277048 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:37276988 original size:93 final size:93
Alignment explanation
Indices: 37276880--37277052 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
37276870 CGCCCATAAG
* *
37276880 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
37276945 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
37276973 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
* *
37277038 ATGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
37277053 CAAATATCCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:37283698 original size:18 final size:18
Alignment explanation
Indices: 37283643--37283747 Score: 104
Period size: 18 Copynumber: 5.9 Consensus size: 18
37283633 CAATTAGTAA
*
37283643 TATTCATTAACAATCAGT
1 TATTCAGTAACAATCAGT
* * * *
37283661 CAATCAG-AACAATTATT
1 TATTCAGTAACAATCAGT
*
37283678 TATTCAGTAACAGTCAGT
1 TATTCAGTAACAATCAGT
*
37283696 TATTCAGTAACAATCAAT
1 TATTCAGTAACAATCAGT
* *
37283714 TATTCAATAATAATCAGT
1 TATTCAGTAACAATCAGT
* *
37283732 TATTGAGTATCAATCA
1 TATTCAGTAACAATCA
37283748 ATTGATCGGT
Statistics
Matches: 67, Mismatches: 19, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
17 13 0.19
18 54 0.81
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (18 bp):
TATTCAGTAACAATCAGT
Found at i:37283717 original size:36 final size:36
Alignment explanation
Indices: 37283643--37283750 Score: 119
Period size: 36 Copynumber: 3.0 Consensus size: 36
37283633 CAATTAGTAA
* * * * *
37283643 TATTCATTAACAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* *
37283678 TATTCAGTAACAGTCAGTTATTCAGTAACAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* * *
37283714 TATTCAATAATAATCAGTTATTGAGTATCAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
37283750 T
1 T
37283751 GATCGGTTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
35 21 0.34
36 40 0.66
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (36 bp):
TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
Found at i:37283783 original size:18 final size:18
Alignment explanation
Indices: 37283757--37283830 Score: 60
Period size: 18 Copynumber: 4.1 Consensus size: 18
37283747 AATTGATCGG
*
37283757 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
37283775 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAGTCA-A
* * * *
37283794 -TATACAGAAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
37283812 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
37283830 T
1 T
37283831 CTTTCCAGTT
Statistics
Matches: 41, Mismatches: 12, Indels: 6
0.69 0.20 0.10
Matches are distributed among these distances:
18 28 0.68
19 13 0.32
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:37284054 original size:53 final size:53
Alignment explanation
Indices: 37283940--37284060 Score: 161
Period size: 53 Copynumber: 2.3 Consensus size: 53
37283930 CCAAAGCTGG
* * * *
37283940 AACAGTAATAGTAACAGTACGGTACACAGAGTACCTCATCAGAATAAATTCGG
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
** * * *
37283993 AATGGTAACAATAACAGTACGGTACACAGAGTACCTTATCGGAACAAATCCGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
37284046 AACAGTAACAGTAAC
1 AACAGTAACAGTAAC
37284061 GGTATCAGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
Found at i:37286225 original size:19 final size:20
Alignment explanation
Indices: 37286182--37286227 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
37286172 ATTGGGCCTT
*
37286182 GCCCATATTAACATAGTTGG
1 GCCCATATTAACACAGTTGG
* *
37286202 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
37286221 GCCCATA
1 GCCCATA
37286228 ACAAAACAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:37289664 original size:30 final size:30
Alignment explanation
Indices: 37289630--37289689 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
37289620 TTTTAATGCA
37289630 AACTCATGCTAACTGAATATTCATGGCATT
1 AACTCATGCTAACTGAATATTCATGGCATT
*
37289660 AACTCATGCTAGCTGAATATTCATGGCATT
1 AACTCATGCTAACTGAATATTCATGGCATT
37289690 CATTACAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (30 bp):
AACTCATGCTAACTGAATATTCATGGCATT
Found at i:37293008 original size:41 final size:40
Alignment explanation
Indices: 37292963--37293061 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 40
37292953 TTTCTAAATC
*
37292963 AATGAAAAGCTTGAAAAGAAAGTGATCCGAAAAGGATAACA
1 AATGAAAAG-TTGAAAAGAAAGTGATCCGAAAAGAATAACA
* * * *
37293004 AATGAAATGTTGACAAGGAAGTTATCCGAAAAGAATAACA
1 AATGAAAAGTTGAAAAGAAAGTGATCCGAAAAGAATAACA
*
37293044 AATGAAAATGTTAAAAAG
1 AATGAAAA-GTTGAAAAG
37293062 GATGTTATTC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 34 0.69
41 15 0.31
ACGTcount: A:0.54, C:0.08, G:0.20, T:0.18
Consensus pattern (40 bp):
AATGAAAAGTTGAAAAGAAAGTGATCCGAAAAGAATAACA
Found at i:37293033 original size:40 final size:40
Alignment explanation
Indices: 37292963--37293091 Score: 141
Period size: 41 Copynumber: 3.2 Consensus size: 40
37292953 TTTCTAAATC
* * *
37292963 AATGAAAAGCTTGAAAAGAAAGTGATCCGAAAAGGATAACA
1 AATGAAATG-TTGAAAAGGAAGTTATCCGAAAAGGATAACA
* *
37293004 AATGAAATGTTGACAAGGAAGTTATCCGAAAAGAATAACA
1 AATGAAATGTTGAAAAGGAAGTTATCCGAAAAGGATAACA
* * * * * *
37293044 AATGAAAATGTTAAAAAGGATGTTATTCAAAAAGGACAACG
1 AATG-AAATGTTGAAAAGGAAGTTATCCGAAAAGGATAACA
37293085 AATGAAA
1 AATGAAA
37293092 AAGAAGTGTT
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
40 34 0.46
41 40 0.54
ACGTcount: A:0.53, C:0.09, G:0.20, T:0.19
Consensus pattern (40 bp):
AATGAAATGTTGAAAAGGAAGTTATCCGAAAAGGATAACA
Found at i:37294331 original size:55 final size:54
Alignment explanation
Indices: 37294218--37294324 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 54
37294208 TTTGAATATA
* *
37294218 CACACGGTTTGGCAAACGGCCTGCGACACAGCCGAGTGACCCTAATTCGAATACC
1 CACACGG-TTGGCAAACGGACTGCGACACAGCCGAGTGACCCTAATTCAAATACC
* * * *
37294273 CACACGGTTGGACAAACGGACTGGGACACGGCCGTA-TGTCCCTACTTCAAAT
1 CACACGGTTGG-CAAACGGACTGCGACACAGCCG-AGTGACCCTAATTCAAAT
37294325 GTCCACATGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
54 4 0.09
55 39 0.89
56 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (54 bp):
CACACGGTTGGCAAACGGACTGCGACACAGCCGAGTGACCCTAATTCAAATACC
Found at i:37295249 original size:46 final size:46
Alignment explanation
Indices: 37295189--37295508 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
37295179 TTTGACATGA
* * * * * *
37295189 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
37295235 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37295281 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37295327 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37295373 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37295419 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
37295465 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
37295509 AGAGCACACT
Statistics
Matches: 255, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 251 0.98
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:37300652 original size:42 final size:41
Alignment explanation
Indices: 37300491--37300644 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 41
37300481 TACCATACCA
* *** * *
37300491 ATGCCATATCCCAGATATAGTCTTACATGGGTTCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAG-TCTCATATAG
* * * * *
37300533 ATGCCAATAGCCTAGCTATGGTCTTACACGAAGTCCCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACAC-AAGTCTCATATAG
* *
37300576 ATGTCATATCCCAGATATGGTCTTATACAAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACAC-AAGTCTCATATAG
* *
37300618 ATGCCATTTCCCATATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
37300645 TATAGTCTTA
Statistics
Matches: 88, Mismatches: 22, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
42 58 0.66
43 29 0.33
44 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACAAGTCTCATATAG
Found at i:37306240 original size:25 final size:25
Alignment explanation
Indices: 37306198--37306302 Score: 65
Period size: 25 Copynumber: 4.2 Consensus size: 25
37306188 GCCCTCTCTC
* **
37306198 GAGCCATATAACAAGAAGCTCATGT
1 GAGCCATGTAACGGGAAGCTCATGT
* *
37306223 GAGCCATGTAACGGGAAGCTTATCT
1 GAGCCATGTAACGGGAAGCTCATGT
* **
37306248 G-GAC-TGTATAACGGGAAGCTCATAA
1 GAGCCATG--TAACGGGAAGCTCATGT
* *
37306273 GAGCCATATTTA--GGAAGCTCATGT
1 GAGCCAT-GTAACGGGAAGCTCATGT
37306297 GAGCCA
1 GAGCCA
37306303 ATAATGGGTA
Statistics
Matches: 61, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
23 2 0.03
24 18 0.30
25 36 0.59
26 4 0.07
27 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (25 bp):
GAGCCATGTAACGGGAAGCTCATGT
Found at i:37306899 original size:5 final size:5
Alignment explanation
Indices: 37306870--37306908 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
37306860 AAATTTAACA
* *
37306870 TCAAT TGAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
37306909 CATCTTTGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (5 bp):
TCAAT
Found at i:37323132 original size:17 final size:17
Alignment explanation
Indices: 37323096--37323138 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
37323086 ATTTCATGTA
*
37323096 TTATTA-TTAATATATT
1 TTATTATTTAATATATG
*
37323112 TTATTATTTATTATATG
1 TTATTATTTAATATATG
37323129 TTATT-TTTAA
1 TTATTATTTAA
37323139 ACACATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TTATTATTTAATATATG
Found at i:37327289 original size:23 final size:21
Alignment explanation
Indices: 37327249--37327292 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
37327239 TTCAATTCTT
*
37327249 TTATTTTATTTTATATTTTAA
1 TTATTTTATTTTAAATTTTAA
37327270 TTATTTTATATTTAAAATTTTAA
1 TTATTTTAT-TTT-AAATTTTAA
37327293 AAATTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 3 0.15
23 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATTTTATTTTAAATTTTAA
Found at i:37335176 original size:30 final size:30
Alignment explanation
Indices: 37335142--37335202 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
37335132 CATTTAATAC
*
37335142 AAACTTTGGAAAAATTACACTTTTTCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
37335172 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
37335202 A
1 A
37335203 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:37338601 original size:76 final size:76
Alignment explanation
Indices: 37338512--37338674 Score: 209
Period size: 76 Copynumber: 2.1 Consensus size: 76
37338502 ATTAAATGTG
** * * * * *
37338512 TGTGCCCAACACTAGCCGGATAACCCAAAAAAGATTTGTGCCCAGTACTAGTCGGATAAACTGAC
1 TGTGCCCAACACTAGCCGGATAACCCAAAAAAGATTTGCACCAAGCACTAATCGAATAAACTAAC
37338577 GATATTAAATA
66 GATATTAAATA
* * * * *
37338588 TGTGCCCAACACTAGTCGGATAACCCGACAAGGATTTGCACCAAGCGCTAATCGAATAAACTAAC
1 TGTGCCCAACACTAGCCGGATAACCCAAAAAAGATTTGCACCAAGCACTAATCGAATAAACTAAC
*
37338653 GATATTAAATG
66 GATATTAAATA
37338664 TGTGCCCAACA
1 TGTGCCCAACA
37338675 TTAGTTAGAA
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.21
Consensus pattern (76 bp):
TGTGCCCAACACTAGCCGGATAACCCAAAAAAGATTTGCACCAAGCACTAATCGAATAAACTAAC
GATATTAAATA
Found at i:37342670 original size:50 final size:52
Alignment explanation
Indices: 37342560--37342680 Score: 183
Period size: 50 Copynumber: 2.4 Consensus size: 52
37342550 ATGAACAAAT
* * *
37342560 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
* *
37342612 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
37342662 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
37342681 TTTACTAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 29 0.46
51 11 0.17
52 23 0.37
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:37342758 original size:39 final size:39
Alignment explanation
Indices: 37342696--37342784 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 39
37342686 TAAATGCAGA
*
37342696 ACACATATTAATGATGTTCAAACTATGACATAATTAAAG
1 ACACATACTAATGATGTTCAAACTATGACATAATTAAAG
*
37342735 ACTCATACTAATGATGTTCAAACTATGACATAATTAAAG
1 ACACATACTAATGATGTTCAAACTATGACATAATTAAAG
*
37342774 ACACAAACTAA
1 ACACATACTAA
37342785 AATAACTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (39 bp):
ACACATACTAATGATGTTCAAACTATGACATAATTAAAG
Found at i:37349450 original size:20 final size:21
Alignment explanation
Indices: 37349425--37349468 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
37349415 TAACTTTAAG
37349425 AAAATGGATCAATTTTCT-GA
1 AAAATGGATCAATTTTCTAGA
**
37349445 AAAATGGATTGATTTTCTAGA
1 AAAATGGATCAATTTTCTAGA
37349466 AAA
1 AAA
37349469 TAACTTGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (21 bp):
AAAATGGATCAATTTTCTAGA
Found at i:37351744 original size:27 final size:27
Alignment explanation
Indices: 37351696--37351852 Score: 171
Period size: 27 Copynumber: 5.8 Consensus size: 27
37351686 GCGAGGCTGC
* * *
37351696 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
37351723 CAGATATTGTGGCAAAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
*
37351749 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
37351776 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAAAGCCACCAGATA
37351803 CAGATATATGTGGCAGAA-CCACCAGAT-
1 CAGATAT-TGTGGCA-AAGCCACCAGATA
*
37351830 CAGATAATTGTGGCATAGCCACC
1 CAGAT-ATTGTGGCAAAGCCACC
37351853 GGGACGTTTC
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
26 11 0.10
27 96 0.86
28 5 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:37351789 original size:54 final size:54
Alignment explanation
Indices: 37351714--37351852 Score: 235
Period size: 54 Copynumber: 2.6 Consensus size: 54
37351704 GTGACGAAGT
* *
37351714 CACCAGATACAGAT-ATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAAC
*
37351768 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAAC
37351822 CACCAGATCAGATAATTGTGGCATAGCCACC
1 CACCAGATCAGATAATTGTGGCATAGCCACC
37351853 GGGACGTTTC
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAAC
Found at i:37353485 original size:26 final size:26
Alignment explanation
Indices: 37353449--37353556 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
37353439 TGAAATGCTC
*
37353449 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
37353475 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37353501 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37353527 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37353553 ATCA
1 ATCA
37353557 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37358593 original size:17 final size:17
Alignment explanation
Indices: 37358571--37358604 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37358561 ATTTGTAAGC
37358571 ACACTTAGATTAATTTT
1 ACACTTAGATTAATTTT
37358588 ACACTTAGATTAATTTT
1 ACACTTAGATTAATTTT
37358605 TAGGGTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
ACACTTAGATTAATTTT
Found at i:37362829 original size:46 final size:44
Alignment explanation
Indices: 37362619--37362829 Score: 124
Period size: 46 Copynumber: 4.6 Consensus size: 44
37362609 GTGAGTTAGC
* * * * *
37362619 GTAAGACATGTCTGGGACATGCATCAACCAC-ATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCTACGA-GAT--GTGTCAGT
* * * *
37362665 ATAAGACCATGTCTGGGACATGGCATC-G-TCATTGAGATGAGTGCTAGA
1 GTAAGA-CATGTCTGGGACAT-GCATCAGCT-A-CGAGATGTGT-C-AGT
* * * *
37362713 GTAAGACATGTCTGGGACATGCTTCGACCT-CGAGACGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATC-AGCTACGAGATGT--GTCAGT
* *
37362759 GTAAGATATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGTCAGT
*
37362803 GTAAGACCATGTCTAGGACATGGCATC
1 GTAAGA-CATGTCTGGGACAT-GCATC
37362830 GGCACCTGAC
Statistics
Matches: 126, Mismatches: 24, Indels: 30
0.70 0.13 0.17
Matches are distributed among these distances:
44 11 0.09
45 14 0.11
46 53 0.42
47 31 0.25
48 15 0.12
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGTCAGT
Done.