Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 115 of 259
Found at i:37363851 original size:29 final size:28
Alignment explanation
Indices: 37363794--37363851 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
37363784 CACACGGGCT
37363794 AGGACACGGGCATGTCATGGCCGTGTGA
1 AGGACACGGGCATGTCATGGCCGTGTGA
*
37363822 AGGACACGGGCGTGTGCCA-GGCCGTGTGA
1 AGGACACGGGCATGT--CATGGCCGTGTGA
37363851 A
1 A
37363852 AACCCCTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 11 0.41
30 2 0.07
ACGTcount: A:0.21, C:0.22, G:0.41, T:0.16
Consensus pattern (28 bp):
AGGACACGGGCATGTCATGGCCGTGTGA
Found at i:37366013 original size:53 final size:54
Alignment explanation
Indices: 37365944--37366150 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
37365934 TTCCTTTTTA
* * *
37365944 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
37365997 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGAATCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
37366051 TAGTTTATCAATGCCATGTCTTGACATGGTCTTATATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
37366106 AACTTACCAATGCCATGTCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
37366151 AAAGTCTAAT
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 40 0.33
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:37368269 original size:17 final size:19
Alignment explanation
Indices: 37368249--37368283 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37368239 TATTACTTAA
37368249 AATG-TAAAA-TTATTATC
1 AATGTTAAAACTTATTATC
37368266 AATGTTAAAACTTATTAT
1 AATGTTAAAACTTATTAT
37368284 TAAATAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (19 bp):
AATGTTAAAACTTATTATC
Found at i:37368320 original size:38 final size:38
Alignment explanation
Indices: 37368278--37368352 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
37368268 TGTTAAAACT
37368278 TATTATTAAATAAGTTTAATAAAATAACAAATAATATC
1 TATTATTAAATAAGTTTAATAAAATAACAAATAATATC
*
37368316 TATTATTAAATAAGTTTAATAGAATAACAAATAATAT
1 TATTATTAAATAAGTTTAATAAAATAACAAATAATAT
37368353 TAATAATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (38 bp):
TATTATTAAATAAGTTTAATAAAATAACAAATAATATC
Found at i:37369237 original size:13 final size:13
Alignment explanation
Indices: 37369221--37369271 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
37369211 TTTCAAAAAC
*
37369221 ACTTCTTAAAAGT
1 ACTTTTTAAAAGT
* * *
37369234 ACTTTTTCACAGC
1 ACTTTTTAAAAGT
37369247 ACTTTTTAAAAGT
1 ACTTTTTAAAAGT
*
37369260 ACTTTTCAAAAG
1 ACTTTTTAAAAG
37369272 CATTGCTAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (13 bp):
ACTTTTTAAAAGT
Found at i:37369273 original size:26 final size:26
Alignment explanation
Indices: 37369208--37369273 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
37369198 TTTAAACCAA
*
37369208 ACTTTTCAAAAACACTTCTTAAAAGT
1 ACTTTTCAAAAGCACTTCTTAAAAGT
* *
37369234 ACTTTTTC-ACAGCACTTTTTAAAAGT
1 AC-TTTTCAAAAGCACTTCTTAAAAGT
37369260 ACTTTTCAAAAGCA
1 ACTTTTCAAAAGCA
37369274 TTGCTAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 5 0.15
26 24 0.71
27 5 0.15
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCTTAAAAGT
Found at i:37370245 original size:2 final size:2
Alignment explanation
Indices: 37370200--37370233 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
37370190 AAAAATAAAT
* *
37370200 GA GA GA GA GA GA GA GA GA GA GA TA GA GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
37370234 TAATTTAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.50, T:0.03
Consensus pattern (2 bp):
GA
Found at i:37370452 original size:3 final size:3
Alignment explanation
Indices: 37370444--37370482 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
37370434 TGCTTTTTGT
* *
37370444 AGA AGA AGA AGA AGA AGA ATA AGA AAA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37370483 TGATTATGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:37382039 original size:19 final size:18
Alignment explanation
Indices: 37382015--37382050 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
37382005 TGCTTAATTA
*
37382015 TTTAATATTAATATTTTAT
1 TTTAATAATAA-ATTTTAT
37382034 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
37382051 ACAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:37382061 original size:22 final size:20
Alignment explanation
Indices: 37382036--37382078 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
37382026 TATTTTATTT
37382036 TAATAATAAATTTTAACAATAA
1 TAATAATAAA-TTTAA-AATAA
**
37382058 TAATTCTAAATTTAAAATAA
1 TAATAATAAATTTAAAATAA
37382078 T
1 T
37382079 TTTGTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 5 0.26
22 8 0.42
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATAATAAATTTAAAATAA
Found at i:37382100 original size:26 final size:27
Alignment explanation
Indices: 37382071--37382129 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
37382061 TTCTAAATTT
* *
37382071 AAAATAATTT-TGTTAATATATTATTA
1 AAAATAATTTATCTTAATATATTAATA
*
37382097 AAAAT-ATTTATCTTAATATTTTAATA
1 AAAATAATTTATCTTAATATATTAATA
37382123 ATAAATA
1 A-AAATA
37382130 TATATTACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 4 0.15
26 19 0.70
27 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (27 bp):
AAAATAATTTATCTTAATATATTAATA
Found at i:37382559 original size:22 final size:22
Alignment explanation
Indices: 37382534--37382575 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
37382524 CATCCAAATA
37382534 TAAAAAA-AATATCAATTTTTCT
1 TAAAAAATAA-ATCAATTTTTCT
37382556 TAAAAAATAAATCAATTTTT
1 TAAAAAATAAATCAATTTTT
37382576 GCAAATATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAAATAAATCAATTTTTCT
Found at i:37393711 original size:20 final size:20
Alignment explanation
Indices: 37393664--37393712 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
37393654 AAGTAAGCCC
*
37393664 AGTTGAGCTCAAATGAGTTG
1 AGTTGAGCTCAAATGAGCTG
***
37393684 AAACGAGCTCAAATGAGCTG
1 AGTTGAGCTCAAATGAGCTG
37393704 AGTTGAGCT
1 AGTTGAGCT
37393713 GGACGGAGCT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (20 bp):
AGTTGAGCTCAAATGAGCTG
Found at i:37397617 original size:23 final size:23
Alignment explanation
Indices: 37397591--37397635 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
37397581 TGATGTTTGT
37397591 TTAAT-TAATTAAGTGAAAAAGGC
1 TTAATCTAA-TAAGTGAAAAAGGC
37397614 TTAATCGTAATAAGTGAAAAAG
1 TTAATC-TAATAAGTGAAAAAG
37397636 TAGAGTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 12 0.60
25 3 0.15
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (23 bp):
TTAATCTAATAAGTGAAAAAGGC
Found at i:37404626 original size:28 final size:28
Alignment explanation
Indices: 37404593--37404648 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37404583 TTGTACGAGT
37404593 AAATTTTAAATCAATTTATCACATTTCA
1 AAATTTTAAATCAATTTATCACATTTCA
37404621 AAATTTTAAATCAATTTATCACATTTCA
1 AAATTTTAAATCAATTTATCACATTTCA
37404649 TATTCAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (28 bp):
AAATTTTAAATCAATTTATCACATTTCA
Found at i:37407707 original size:43 final size:44
Alignment explanation
Indices: 37407629--37407739 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 44
37407619 CCACTGTCCT
* * * * *
37407629 AGACAGGGTCTTACATGAAATCA-TATAACATTGCCAATGTCCC
1 AGACATGGTCTTACATGTAATCACAATAACAATGCCAATGACCC
* *
37407672 AGGCATTGTCTTACATGTAATCACAAT-ACAATGCCAATGACCC
1 AGACATGGTCTTACATGTAATCACAATAACAATGCCAATGACCC
*
37407715 AGACATGGTCTTACTTGTAATCACA
1 AGACATGGTCTTACATGTAATCACA
37407740 TCTCGATAAC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 55 0.96
44 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (44 bp):
AGACATGGTCTTACATGTAATCACAATAACAATGCCAATGACCC
Found at i:37409311 original size:182 final size:182
Alignment explanation
Indices: 37408982--37409356 Score: 506
Period size: 182 Copynumber: 2.1 Consensus size: 182
37408972 TGACTCAGCT
* *
37408982 GTGTGTCCCTTGTAGGTCTTATTGCATACAAGTCAGGTAGTAACATGGCCTAACACATGGCCTGG
1 GTGTGTCCCTTGTAGGTCTTATTGCACACAAGTCAGGCAGTAACATGGCCTAACACATGGCCTGG
* * * * *
37409047 CATATGGGCTTGTGGGGTTATTTCAAGAGTTACACAGCCTGGCACACGGGCATGAGACATGGCCG
66 CACA-GGGCGTGTGGGGCTATTTCAAGAGTTACACAGCCTGGCACACGGGCATGAGACATGACAG
* * * *
37409112 TACAACCCTATTTAGTGAGTTACAC-TGTGAGGACATGGGTTGGGACACGATC
130 TACAACCCTACTTAGTGAGTTACACGGGTGAGGACACGGGTTGGGACACAATC
* *
37409164 GTGTGTCCCTTGTAGGTTTTATTGCACACAAGTCAGGCAGTTACATGGCCTAACACATGGCCTGG
1 GTGTGTCCCTTGTAGGTCTTATTGCACACAAGTCAGGCAGTAACATGGCCTAACACATGGCCT-G
* *
37409229 AGCACA-GGCGTGTGGGGCTATTTCGAGAGTTACACAGCCTGGCACATGGGCGAATG-G-CATGA
65 -GCACAGGGCGTGTGGGGCTATTTCAAGAGTTACACAGCCTGGCACACGGGC--ATGAGACATGA
* ***
37409291 CATTGTGACCCTACTTAGTGAGTTACACGGGTGAGGACACGGGTTGGGACACAATC
127 CAGTACAACCCTACTTAGTGAGTTACACGGGTGAGGACACGGGTTGGGACACAATC
37409347 GTGTGTCCCT
1 GTGTGTCCCT
37409357 ATTTTGATTC
Statistics
Matches: 169, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
182 126 0.75
183 36 0.21
184 7 0.04
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (182 bp):
GTGTGTCCCTTGTAGGTCTTATTGCACACAAGTCAGGCAGTAACATGGCCTAACACATGGCCTGG
CACAGGGCGTGTGGGGCTATTTCAAGAGTTACACAGCCTGGCACACGGGCATGAGACATGACAGT
ACAACCCTACTTAGTGAGTTACACGGGTGAGGACACGGGTTGGGACACAATC
Found at i:37412107 original size:46 final size:46
Alignment explanation
Indices: 37412040--37412211 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
37412030 AACCCGCCCC
*
37412040 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
37412086 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
37412134 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
37412179 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
37412212 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:37412152 original size:93 final size:93
Alignment explanation
Indices: 37412045--37412215 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37412035 GCCCCTAAGT
* *
37412045 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37412110 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
37412138 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37412203 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37412216 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37412954 original size:12 final size:12
Alignment explanation
Indices: 37412937--37412962 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37412927 GGGTATTTTT
37412937 CCAAATATAAAC
1 CCAAATATAAAC
37412949 CCAAATATAAAC
1 CCAAATATAAAC
37412961 CC
1 CC
37412963 TAGGTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (12 bp):
CCAAATATAAAC
Found at i:37421678 original size:18 final size:19
Alignment explanation
Indices: 37421634--37421684 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
37421624 GTGGCAGTTG
37421634 CAGTAATCAGTGCAGTAAC
1 CAGTAATCAGTGCAGTAAC
* *
37421653 CA-TGATCAATGCAGTAA-
1 CAGTAATCAGTGCAGTAAC
*
37421670 TAGTAATCAGTGCAG
1 CAGTAATCAGTGCAG
37421685 AATGCAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 1 0.04
18 23 0.88
19 2 0.08
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTAAC
Found at i:37422059 original size:27 final size:27
Alignment explanation
Indices: 37422028--37422142 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
37422018 AAAATCTATG
* * * *
37422028 ATTTTACCTTATCGTGGTATTACAGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
**
37422055 ATTTTACCCTATAGGGGTATTTTGGGTC
1 ATTTTACCCTATAGGGGTA-TTTCAGTC
* *
37422083 ATTTTACCCTATGGGGGTCTTTCAGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
* * **
37422110 ATTTTACCCTGTGGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCAGTC
37422137 ATTTTA
1 ATTTTA
37422143 TCACATGAAG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 51 0.70
28 22 0.30
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTTCAGTC
Found at i:37422089 original size:28 final size:27
Alignment explanation
Indices: 37422052--37422142 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
37422042 TGGTATTACA
*
37422052 GTCATTTTACCCTATAGGGGTATTTTGG
1 GTCATTTTACCCTATGGGGGTATTTT-G
* **
37422080 GTCATTTTACCCTATGGGGGTCTTTCA
1 GTCATTTTACCCTATGGGGGTATTTTG
*
37422107 GTCATTTTACCCTGTGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTTG
37422134 GTCATTTTA
1 GTCATTTTA
37422143 TCACATGAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 32 0.58
28 23 0.42
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTTG
Found at i:37422167 original size:27 final size:27
Alignment explanation
Indices: 37422135--37422286 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
37422125 GGTATTTTGG
* *
37422135 TCATTTTATCACATGAAGGAAAAATCA
1 TCATTTTATCACATGAGGGCAAAATCA
* *
37422162 TTATTTTATCACATGAGGGTAAAATCA
1 TCATTTTATCACATGAGGGCAAAATCA
*
37422189 TCATTTTAACACATGAGGGCAAAATCA
1 TCATTTTATCACATGAGGGCAAAATCA
* * *
37422216 TCATTTTATCACATAAGGGTAAAATCG
1 TCATTTTATCACATGAGGGCAAAATCA
*
37422243 TCATTTTATCACATGAGGGCAAAATCG
1 TCATTTTATCACATGAGGGCAAAATCA
37422270 TCATTTTATCACATGAG
1 TCATTTTATCACATGAG
37422287 AGTTCAGGTA
Statistics
Matches: 113, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
TCATTTTATCACATGAGGGCAAAATCA
Found at i:37424397 original size:27 final size:26
Alignment explanation
Indices: 37424367--37424427 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
37424357 ATTTACTAAA
37424367 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCT-AG-ATGCAAAATTACCACT
* *
37424394 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCACT
37424420 ATACCCCT
1 ATACCCCT
37424428 TGGGTTAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.36, C:0.30, G:0.08, T:0.26
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCACT
Found at i:37424576 original size:28 final size:28
Alignment explanation
Indices: 37424533--37424648 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
37424523 GGAGGAAGCG
* *
37424533 TTCTGGTGGCTATGCCATAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
37424561 TTCTGGTGGTTCTGCCACAAATATCTGA
1 TTCTGGTGGCTCTGCCACAAATATCTGT
37424589 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
37424617 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
37424643 TTCTGG
1 TTCTGG
37424649 AAGCCATGTT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.06
27 8 0.10
28 65 0.83
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:37432186 original size:27 final size:27
Alignment explanation
Indices: 37432153--37432214 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
37432143 ATTTATTAAA
37432153 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCTAAG-ATGCAAAATTACCACT
* *
37432180 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCACT
37432206 ATACCCCTA
1 ATACCCCTA
37432215 GGGTTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCACT
Found at i:37432421 original size:28 final size:28
Alignment explanation
Indices: 37432322--37432429 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 28
37432312 GGAAGTGTTC
* * *
37432322 TGGTGGCTATACCACAAATATCTGTTTT
1 TGGTGGCTCTGCCACAAATATCTGTATT
*
37432350 TGGTGGTTCTGCCACAAATATCTG-ATT
1 TGGTGGCTCTGCCACAAATATCTGTATT
** *
37432377 CTGGTGGGACTGCCACAAATAACTGTATT
1 -TGGTGGCTCTGCCACAAATATCTGTATT
* *
37432406 TGGTGACTCTGTCAC-AATATCTGT
1 TGGTGGCTCTGCCACAAATATCTGT
37432430 TCTGGCAGCC
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 10 0.15
28 53 0.80
29 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTGTATT
Found at i:37435732 original size:129 final size:130
Alignment explanation
Indices: 37435497--37435749 Score: 393
Period size: 129 Copynumber: 2.0 Consensus size: 130
37435487 TTTAGAATTC
*
37435497 AAAGAACATGAGTGAAATTCTAAAGGGATATTCGATCATTTTGAACAAACGGGAAATTGCAACCC
1 AAAGAACATGAGTGAAATTCTAAAGGGATATTCGATCATTTTGAACAAACAGGAAATTGCAACCC
* *
37435562 AGTACGATAGGGCACGATTCCCCAAGTTGCCAAACATCGAACATTACCTTCGTTTTAAAATTTTT
66 AGCACGATAGGGCACGATTCCCCAAGTTACCAAACATCGAACATTACCTTCGTTTTAAAATTTTT
* * *
37435627 AAAG-ACATGAGTGAAATTCTAAA-GGATTATTCTATTATTTTGAACAAACAGGAAATTGCAACT
1 AAAGAACATGAGTGAAATTCTAAAGGGA-TATTCGATCATTTTGAACAAACAGGAAATTGCAACC
** * *
37435690 CAGCACGATAGGGCACGATTCCCTGAGTTACCAAACATCGAACGTTGCCTTCGTTTTAAA
65 CAGCACGATAGGGCACGATTCCCCAAGTTACCAAACATCGAACATTACCTTCGTTTTAAA
37435750 GAAAATTTTT
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
128 3 0.03
129 105 0.94
130 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (130 bp):
AAAGAACATGAGTGAAATTCTAAAGGGATATTCGATCATTTTGAACAAACAGGAAATTGCAACCC
AGCACGATAGGGCACGATTCCCCAAGTTACCAAACATCGAACATTACCTTCGTTTTAAAATTTTT
Found at i:37438645 original size:40 final size:41
Alignment explanation
Indices: 37438551--37438771 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 41
37438541 TATTCGAATG
*
37438551 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
37438592 ATAACCAGACTAAGAT-CCGAAGGCATTCGTGCTAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
37438632 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
37438672 ATATCCGGGCTAAG-TCCCGAAGGCGTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
37438712 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
37438751 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
37438772 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 16 0.10
40 94 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37446721 original size:40 final size:40
Alignment explanation
Indices: 37446627--37446795 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
37446617 TATTCGAATG
*
37446627 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* * *
37446668 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCTAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* *
37446708 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37446748 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37446788 ATATCCGG
1 ATATCCGG
37446796 ACTATATCCG
Statistics
Matches: 113, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.72
41 30 0.27
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37449185 original size:25 final size:25
Alignment explanation
Indices: 37449157--37449235 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
37449147 ACTCGGCCCT
37449157 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
37449182 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATACACTTTC-ACATTC
37449204 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
37449229 ATCACAT
1 ATCACAT
37449236 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:37449223 original size:47 final size:47
Alignment explanation
Indices: 37449108--37449511 Score: 639
Period size: 47 Copynumber: 8.6 Consensus size: 47
37449098 CCCTTCGGGA
* * * * * *
37449108 CTTATCACATTTATACACTTTCACATCCATCACGT-TGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37449154 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37449201 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37449248 CTTATCACATATATACACTTTCACATTCATAACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37449295 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37449342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37449389 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37449438 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37449485 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
37449512 TATTCAAATA
Statistics
Matches: 332, Mismatches: 23, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
46 31 0.09
47 257 0.77
49 44 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37449324 original size:141 final size:140
Alignment explanation
Indices: 37449108--37449511 Score: 646
Period size: 143 Copynumber: 2.9 Consensus size: 140
37449098 CCCTTCGGGA
* * * * * *
37449108 CTTATCACATTTATACACTTTCACATCCATCACGTTGCCACTCGGCCCTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACT
* * *
37449173 TTCACATTCATCACATTGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
37449238 GCCATTAGGC
131 GCCATTAGGC
* *
37449248 CTTATCACATATATACACTTTCACATTCATAACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATACAC
*
37449313 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
37449378 GGCCATTAGGC
130 GGCCATTAGGC
*
37449389 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACA-TGGCCATTCGGCCTTATCACATATATAC
*
37449454 ACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
37449512 TATTCAAATA
Statistics
Matches: 243, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
140 31 0.13
141 104 0.43
143 107 0.44
144 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:37452572 original size:40 final size:40
Alignment explanation
Indices: 37452540--37452849 Score: 471
Period size: 40 Copynumber: 7.8 Consensus size: 40
37452530 CCAGCATGAT
* * * * * *
37452540 TGCTTTTCGGGACCTAGCCCGGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
37452580 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37452620 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37452660 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37452700 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37452740 TGCTCTTCGGGAC--AGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37452778 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37452818 TGCTCTTCGGGACTTAGCTCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
37452850 CTCAATTCTC
Statistics
Matches: 249, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
38 38 0.15
40 211 0.85
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:37452806 original size:118 final size:119
Alignment explanation
Indices: 37452540--37452849 Score: 469
Period size: 118 Copynumber: 2.6 Consensus size: 119
37452530 CCAGCATGAT
* * * * * * **
37452540 TGCTTTTCGGGACCTAGCCCGGATATAACACCAACACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
* *
37452605 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGAAC-TAGCCCGGATACATCACTAGCACGAA
* * *
37452660 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
*
37452725 CATCACTAGCACGAATGCTCTTCGGGAC-AGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGAACTAGCCCGGATACATCACTAGCACGAA
*
37452778 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCTCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
37452843 CATCACT
66 CATCACT
37452850 CTCAATTCTC
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
118 93 0.54
120 80 0.46
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTAGCCCGGATACATCACTAGCACGAA
Found at i:37454346 original size:47 final size:47
Alignment explanation
Indices: 37454275--37454632 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
37454265 CCCTTCGGGA
* * * * * *
37454275 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37454322 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37454369 CTTATCACATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37454416 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37454463 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37454510 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37454557 CTTACCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37454606 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
37454633 TATTCAAATA
Statistics
Matches: 295, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 249 0.84
49 46 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37454353 original size:25 final size:25
Alignment explanation
Indices: 37454325--37454403 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
37454315 ACTCGGCCCT
37454325 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
37454350 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
*
37454372 ATCACATATATACACTTTCACAGTC
1 ATCACATATATACACTTTCACATTC
37454397 ATCACAT
1 ATCACAT
37454404 CGGCCATTAG
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 11 0.29
23 5 0.13
24 4 0.11
25 18 0.47
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:37485068 original size:18 final size:18
Alignment explanation
Indices: 37485045--37485082 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37485035 GTGTCTTTCT
*
37485045 ATATTATTTCAGACAGAG
1 ATATTATTTCAGACAAAG
37485063 ATATTATTTCAGACAAAG
1 ATATTATTTCAGACAAAG
37485081 AT
1 AT
37485083 CCTTGGCTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (18 bp):
ATATTATTTCAGACAAAG
Found at i:37501404 original size:37 final size:37
Alignment explanation
Indices: 37501354--37501432 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
37501344 TTATTACGAA
* * *
37501354 GTCTTACCCGGACATAA-TCTCCACATGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37501391 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37501428 GTCTT
1 GTCTT
37501433 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37501669 original size:47 final size:47
Alignment explanation
Indices: 37501551--37502132 Score: 986
Period size: 47 Copynumber: 12.4 Consensus size: 47
37501541 CCCTTCGGGA
* * * * * * *
37501551 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37501598 CCTGTCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37501644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37501691 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37501738 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37501785 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37501832 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37501879 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37501926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37501973 CTTATCACACATATAGACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37502020 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37502067 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37502114 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37502133 GTCTTGGCTG
Statistics
Matches: 507, Mismatches: 27, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 37 0.07
47 470 0.93
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37520556 original size:86 final size:85
Alignment explanation
Indices: 37520398--37520561 Score: 215
Period size: 86 Copynumber: 1.9 Consensus size: 85
37520388 GAAAAGCTCG
* * * *
37520398 TACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCTAGATA
1 TACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACA
37520463 GGGTCTTACACGAAATCAAA
66 GGGTCTTACACGAAATCAAA
* * *
37520483 TACAATGCCAATGTCCCAGATATGGTCTTACATGTAAATCATAA-GTTGATGCCAAC-GTCCCAG
1 TACAATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATTGATGCC-ACTGTCCCAG
*
37520546 ACATGGTCTTACACGA
63 ACAGGGTCTTACACGA
37520562 TAACACATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 31 0.46
86 33 0.49
87 4 0.06
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (85 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACA
GGGTCTTACACGAAATCAAA
Found at i:37521913 original size:30 final size:31
Alignment explanation
Indices: 37521877--37521936 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
37521867 GCTTCGGAGA
* *
37521877 GTCACAC-GCCCGTGTGGATTGGGCCATGTG
1 GTCACACAGCCCATGTGGATTGGGACATGTG
*
37521907 GTCACACAAGTCCATGTGGATTGGGACATG
1 GTCACAC-AGCCCATGTGGATTGGGACATG
37521937 CCCGAGTCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.28
32 18 0.72
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.23
Consensus pattern (31 bp):
GTCACACAGCCCATGTGGATTGGGACATGTG
Found at i:37523403 original size:54 final size:54
Alignment explanation
Indices: 37523321--37523428 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
37523311 CTCTTAGCAC
37523321 AACCACTCATGCAAACAGGACAATCATATGCATCATATTAGTATCAACTAAGTA
1 AACCACTCATGCAAACAGGACAATCATATGCATCATATTAGTATCAACTAAGTA
37523375 AACCACTCATGCAAACAGGACAATCATATGCATCATATTAGTATCAACTAAGTA
1 AACCACTCATGCAAACAGGACAATCATATGCATCATATTAGTATCAACTAAGTA
37523429 TAGATGAGTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (54 bp):
AACCACTCATGCAAACAGGACAATCATATGCATCATATTAGTATCAACTAAGTA
Found at i:37523629 original size:32 final size:33
Alignment explanation
Indices: 37523551--37523712 Score: 188
Period size: 32 Copynumber: 5.0 Consensus size: 33
37523541 TTTCTTTCTG
**
37523551 AGTGGTATACACAAAGTATACCTTTCCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
**
37523584 TA-TGGTATACACAAAGTATACCTTTCCTTTTCA
1 -AGTGGTATACACAAAGTATACCTAACCTTTTCA
* *
37523617 AGT-GTATACACAAAGTGTACATAACCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
* * *
37523649 AGT-GTACACACAAAGTGTACATAACCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
* *
37523681 TGTGGTATACAGAAAGTAT-CCTAACCTTTTCA
1 AGTGGTATACACAAAGTATACCTAACCTTTTCA
37523713 CATTCGATAC
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
32 71 0.61
33 44 0.38
34 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (33 bp):
AGTGGTATACACAAAGTATACCTAACCTTTTCA
Found at i:37523769 original size:30 final size:29
Alignment explanation
Indices: 37523705--37523803 Score: 153
Period size: 29 Copynumber: 3.4 Consensus size: 29
37523695 AGTATCCTAA
*
37523705 CCTTTTCACATTCGATACCCAAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
*
37523734 CCTTTTCACATTCGATAGCCTAAGCTATCC
1 CCTTTTCACATTCGATAGCCAAAGCTAT-C
* *
37523764 CCTTTTTACATTCGATAGCAAAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
37523793 CCTTTTCACAT
1 CCTTTTCACAT
37523804 GGTATACACA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 37 0.59
30 26 0.41
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCAAAGCTATC
Found at i:37528304 original size:16 final size:17
Alignment explanation
Indices: 37528283--37528316 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37528273 CGAACCCTAG
*
37528283 CTTTCTTTTTTAT-TTT
1 CTTTCTTATTTATGTTT
37528299 CTTTCTTATTTATGTTT
1 CTTTCTTATTTATGTTT
37528316 C
1 C
37528317 GGCAAGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.09, C:0.15, G:0.03, T:0.74
Consensus pattern (17 bp):
CTTTCTTATTTATGTTT
Found at i:37537845 original size:40 final size:40
Alignment explanation
Indices: 37537752--37537845 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
37537742 GACTATGTTC
*
37537752 GGCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAAT
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
* * * * * **
37537792 AGCATTAACTGTGCGAATTGGAATAGCTTTGGCTATATGT
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
37537832 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
37537846 AATATTGAGA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
Found at i:37538787 original size:13 final size:13
Alignment explanation
Indices: 37538769--37538794 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37538759 ATATTATAAT
37538769 TATTTTATGTTAA
1 TATTTTATGTTAA
37538782 TATTTTATGTTAA
1 TATTTTATGTTAA
37538795 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:37540210 original size:40 final size:40
Alignment explanation
Indices: 37540162--37540367 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
37540152 GGACTAAGAT
* *
37540162 CCGAAGGCATTTGTGGTAGTGACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
37540202 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
37540242 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
37540282 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
37540322 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
37540361 CCGAAGG
1 CCGAAGG
37540368 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.10
40 138 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:37544732 original size:18 final size:18
Alignment explanation
Indices: 37544709--37544744 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
37544699 CACATAAAAG
37544709 ATTAAGTGAGGTAACAAT
1 ATTAAGTGAGGTAACAAT
37544727 ATTAAGTGAGGTAACAAT
1 ATTAAGTGAGGTAACAAT
37544745 GTATTCCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28
Consensus pattern (18 bp):
ATTAAGTGAGGTAACAAT
Found at i:37551066 original size:16 final size:15
Alignment explanation
Indices: 37551041--37551074 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
37551031 AAAGTTGATA
*
37551041 ATAATTAATATATATT
1 ATAATAAATATA-ATT
37551057 ATAATAAATATAATT
1 ATAATAAATATAATT
37551072 ATA
1 ATA
37551075 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:37551197 original size:30 final size:30
Alignment explanation
Indices: 37551140--37551198 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
37551130 TGCCTTTGAA
* * *
37551140 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGACACACCAAATTTTT
37551170 AATATTTACAAAAAGATCA-ACCAAATTTT
1 AATATTTACAAAAAGA-CACACCAAATTTT
37551199 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGACACACCAAATTTTT
Found at i:37564501 original size:42 final size:43
Alignment explanation
Indices: 37564419--37564511 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
37564409 AGTCATAATG
* * *
37564419 TAATCTCGTATCGATGCCAATAGCCCAGCTATGGTGTTACACA
1 TAATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACA
* *
37564462 -AAGTCTCATATCGATGCC-ATATCCCGGATATGGTCTTACACA
1 TAA-TCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACA
37564504 TAATCTCA
1 TAATCTCA
37564512 GTAACCCTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
TAATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACA
Found at i:37567296 original size:16 final size:16
Alignment explanation
Indices: 37567277--37567307 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37567267 CTTTTGCACT
37567277 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37567293 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37567308 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37567313 original size:20 final size:20
Alignment explanation
Indices: 37567274--37567313 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37567264 AAACTTTTGC
* *
37567274 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
37567294 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37567314 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37567626 original size:53 final size:54
Alignment explanation
Indices: 37567497--37567751 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
37567487 ACTCGGTTAC
* * * *
37567497 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * **
37567546 CTTACCATTGCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
37567599 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* ** * *
37567654 CTTATCAATGCCATATCTTGACATGGTCTTGCACGGTATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
37567707 CCTTACCAACTACCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
37567752 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 36 0.22
50 1 0.01
52 2 0.01
53 47 0.28
54 10 0.06
55 69 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:37568121 original size:30 final size:30
Alignment explanation
Indices: 37568087--37568145 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
37568077 TCCTTGACTC
*
37568087 AAACTTTTGCAAAATTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACACTTTTGCCCCT
* * *
37568117 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTTACAAAATTACACTTTTGCCCC
37568146 AAGGCTCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAAATTACACTTTTGCCCCT
Found at i:37574984 original size:16 final size:16
Alignment explanation
Indices: 37574965--37574995 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37574955 CTTCTTCACT
37574965 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37574981 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37574996 CCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37575364 original size:55 final size:53
Alignment explanation
Indices: 37575243--37575428 Score: 223
Period size: 55 Copynumber: 3.4 Consensus size: 53
37575233 CAATGCCTCA
37575243 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* * * * *
37575296 GCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTG
1 ACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTG
* *
37575351 ACATGGACTTACATGGTATCCTTGCCTTA-GAAACCTTACCAATTGCCATGCCTTG
1 ACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTTG
* *
37575406 GCGTGGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGGTATCCTT
37575429 AAACCCTAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
52 2 0.02
53 28 0.25
54 8 0.07
55 73 0.65
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (53 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
Found at i:37581846 original size:64 final size:64
Alignment explanation
Indices: 37581766--37581950 Score: 180
Period size: 67 Copynumber: 2.9 Consensus size: 64
37581756 AGACATTATG
* *
37581766 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACAGCATGTAGACAAGAGAGCTACG-GAATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAG-ATAA
* * * * * *
37581830 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37581895 AA
63 AA
* * * *
37581897 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GCACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCT
37581951 GAACTATATG
Statistics
Matches: 98, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 21 0.21
65 8 0.08
66 16 0.16
67 29 0.30
68 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37584849 original size:43 final size:42
Alignment explanation
Indices: 37584812--37584936 Score: 148
Period size: 42 Copynumber: 2.9 Consensus size: 42
37584802 TCCCACACAG
*
37584812 GGTCTTACACAAAATCGAT-TAACGATG-CAAATGTCCCAGATAT
1 GGTCTTACACATAATC-ATATAA-GATGTC-AATGTCCCAGATAT
*
37584855 GGTCTTACACGTAATCATATAAGATGTCAATGTCCCAGATAT
1 GGTCTTACACATAATCATATAAGATGTCAATGTCCCAGATAT
* *
37584897 GGTCTTACACATAATCACAATACA-ATGCCAATGTCCCAGA
1 GGTCTTACACATAATCA-TATA-AGATGTCAATGTCCCAGA
37584937 CATTTTCTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
42 36 0.49
43 36 0.49
44 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (42 bp):
GGTCTTACACATAATCATATAAGATGTCAATGTCCCAGATAT
Found at i:37584946 original size:43 final size:42
Alignment explanation
Indices: 37584812--37584936 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 42
37584802 TCCCACACAG
* * * *
37584812 GGTCTTACACAAAATCGATTAACGATGCAAATGTCCCAGATAT
1 GGTCTTACACATAATCAAATAA-GATGCCAATGTCCCAGATAT
* * *
37584855 GGTCTTACACGTAATCATATAAGATGTCAATGTCCCAGATAT
1 GGTCTTACACATAATCAAATAAGATGCCAATGTCCCAGATAT
37584897 GGTCTTACACATAATCACAATACA-ATGCCAATGTCCCAGA
1 GGTCTTACACATAATCA-AATA-AGATGCCAATGTCCCAGA
37584937 CATTTTCTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 34 0.49
43 35 0.50
44 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (42 bp):
GGTCTTACACATAATCAAATAAGATGCCAATGTCCCAGATAT
Found at i:37588659 original size:42 final size:42
Alignment explanation
Indices: 37588560--37588676 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
37588550 GTACCAATGT
* *
37588560 CATATCCCAGATATGGTATTA-ATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGC
* * * *
37588601 CAATAGCACAGCTATGGTCTTACATG-AAGTCTCATATCGATTC
1 C-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCGATGC
*
37588644 CATATCCCAGATATGGTCTTACACGTAATCTCA
1 CATATCCCAGATATGGTCTTACATGTAATCTCA
37588677 ATAACCCTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.02
42 43 0.69
43 18 0.29
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGC
Found at i:37588872 original size:20 final size:20
Alignment explanation
Indices: 37588844--37588885 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
37588834 TAAGCATTTG
*
37588844 TACATATATAATTTAATGCT
1 TACACATATAATTTAATGCT
37588864 TACACATATAATTTAATGCT
1 TACACATATAATTTAATGCT
37588884 TA
1 TA
37588886 TTAAACATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (20 bp):
TACACATATAATTTAATGCT
Found at i:37593598 original size:11 final size:11
Alignment explanation
Indices: 37593573--37593620 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
37593563 CGAATCTGTC
* *
37593573 AAAAATAAATC
1 AAAAATTAATT
37593584 AAAAATTAATT
1 AAAAATTAATT
*
37593595 -AAAATTTATT
1 AAAAATTAATT
37593605 ATAAAATTAATT
1 A-AAAATTAATT
37593617 AAAA
1 AAAA
37593621 TTCAACATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 9 0.29
11 12 0.39
12 10 0.32
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAAATTAATT
Found at i:37598990 original size:18 final size:19
Alignment explanation
Indices: 37598955--37598993 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
37598945 TGCCTAAAAC
37598955 AAGGAAAAAGCAAGAAGAA
1 AAGGAAAAAGCAAGAAGAA
37598974 AAGGAAAAGAG-AA-AAGAA
1 AAGGAAAA-AGCAAGAAGAA
37598992 AA
1 AA
37598994 CACAGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 10 0.53
20 2 0.11
ACGTcount: A:0.72, C:0.03, G:0.26, T:0.00
Consensus pattern (19 bp):
AAGGAAAAAGCAAGAAGAA
Found at i:37606362 original size:40 final size:40
Alignment explanation
Indices: 37606279--37606501 Score: 186
Period size: 40 Copynumber: 5.6 Consensus size: 40
37606269 TTGAATGCTG
* * * * *
37606279 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
37606319 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* * **
37606359 TCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
37606399 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
37606439 TCCGGGTTATGTCCCGAAGGCATT-GTGAGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * * *
37606478 TCCAGGCTATGTCCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37606502 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
39 32 0.21
40 112 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:37606521 original size:119 final size:120
Alignment explanation
Indices: 37606279--37606536 Score: 272
Period size: 119 Copynumber: 2.2 Consensus size: 120
37606269 TTGAATGCTG
* * * * *
37606279 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* * * * ** *
37606344 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAA
66 GTGAGAGATACTAAATCCAGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
37606399 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
37606461 TTGTGAGAGTTACTAAATCCAGGCTATGTCCTGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGAGAGATACTAAATCCAGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
37606518 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37606537 TACGTGATTT
Statistics
Matches: 114, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 50 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGAGAGATACTAAATCCAGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:37606522 original size:79 final size:80
Alignment explanation
Indices: 37606354--37606536 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 80
37606344 GTGCGAGATA
** * *
37606354 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
** **
37606419 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
37606434 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGA-GAGTTACTAAATCCAGGCTATGTCCTGAAG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGT-ACGAGTTACTAAATCCAGGCTAAGTCCCGAAG
* *
37606497 GCATTTGAACGAGGAG
65 GCATTCGAACGAAGAG
* *
37606513 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
37606537 TACGTGATTT
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 42 0.50
80 28 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:37614270 original size:40 final size:40
Alignment explanation
Indices: 37614187--37614409 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
37614177 TTGAATGCTG
* * * * *
37614187 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
37614227 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
37614267 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
37614307 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
37614347 TCCGGGTTATGTCCCGAAGGCATT-GTGAGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
37614386 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37614410 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:37614324 original size:80 final size:79
Alignment explanation
Indices: 37614187--37614411 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
37614177 TTGAATGCTG
* * * * * *
37614187 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
37614250 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
37614267 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
37614332 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
37614347 TCCGGGTTATGTCCCGAAGGCATTGTGAGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
37614411 G
65 G
37614412 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:37614429 original size:79 final size:80
Alignment explanation
Indices: 37614262--37614443 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
37614252 GTGCGAGATA
* ** *
37614262 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGAGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
37614327 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * *
37614342 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGAGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGAGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
37614406 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
37614421 CTATATCC-GGTTAAAT-CCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
37614444 TACGTGATTT
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
77 7 0.08
78 6 0.07
79 45 0.53
80 27 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGAGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:37614429 original size:119 final size:120
Alignment explanation
Indices: 37614187--37614443 Score: 272
Period size: 119 Copynumber: 2.2 Consensus size: 120
37614177 TTGAATGCTG
* * * * *
37614187 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* * ** ** *
37614252 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGAGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
37614307 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * *
37614369 TTGTGAGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGAGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
37614426 TCC-GGTTAAAT-CCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37614444 TACGTGATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
117 7 0.06
118 7 0.06
119 51 0.45
120 39 0.34
121 10 0.09
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGAGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:37616466 original size:32 final size:32
Alignment explanation
Indices: 37616386--37616466 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
37616376 TGTGTGGCAC
***
37616386 GCCCGTGTAGCCCACATGTCCAACTTAGCCTA
1 GCCCGTGTAGCCCACACACCCAACTTAGCCTA
* *
37616418 GCCCATGTGGCCCACACACCCAACTTAGCCTA
1 GCCCGTGTAGCCCACACACCCAACTTAGCCTA
*
37616450 GCCCGTGTAGCTCACAC
1 GCCCGTGTAGCCCACAC
37616467 GGCTACACCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.22, C:0.41, G:0.19, T:0.19
Consensus pattern (32 bp):
GCCCGTGTAGCCCACACACCCAACTTAGCCTA
Found at i:37618320 original size:4 final size:4
Alignment explanation
Indices: 37618311--37618338 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
37618301 AGTGAAGAAG
37618311 AAGA AAGA AAGA AAGA AAGA AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA
37618339 GAAAAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:37621191 original size:100 final size:100
Alignment explanation
Indices: 37620965--37621248 Score: 333
Period size: 100 Copynumber: 2.8 Consensus size: 100
37620955 TGAGGTCGCA
* * * *
37620965 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCAC-GTGTGTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-T-TGGTCACAG-GTGTAGTACTA
*** * * *** *
37621028 AGTGCAGGCTACTACATGTATCAG-ATGGT-TAGGTCACG
62 AGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
* * *
37621066 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTTAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACAGGTGTAGTACTAAGTG
37621131 CAGGCTACTATGCGTACCCGAAAACTGTGATCACG
66 CAGGCTACTATGCGTACCCGAAAACTGTGATCACG
* *
37621166 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCAGGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACAGGTGTAGTACTAAGTG
37621231 CAGGCTACTATGCGTACC
66 CAGGCTACTATGCGTACC
37621249 AGATAGCTTC
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
99 35 0.22
100 89 0.56
101 34 0.22
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACAGGTGTAGTACTAAGTG
CAGGCTACTATGCGTACCCGAAAACTGTGATCACG
Found at i:37621248 original size:49 final size:49
Alignment explanation
Indices: 37620965--37621253 Score: 321
Period size: 49 Copynumber: 5.8 Consensus size: 49
37620955 TGAGGTCGCA
* * *
37620965 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-T-TGGTCACG
** * **
37621016 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT-GGTCACG
* * *
37621066 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACG
* * * * *
37621115 TGTGTAGTACTTAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCACG
* * *
37621166 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCAC-G
*
37621216 -GTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
37621254 GCTTCGGCTA
Statistics
Matches: 201, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
49 82 0.41
50 49 0.24
51 70 0.35
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACG
Found at i:37630610 original size:20 final size:22
Alignment explanation
Indices: 37630570--37630610 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
37630560 GCAATAGTTA
*
37630570 TATATGTGTTTACAATTTATTT
1 TATATGTGTTTACAATATATTT
37630592 TATATGT-TTTA-AATATATT
1 TATATGTGTTTACAATATATT
37630611 CTTTGGTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (22 bp):
TATATGTGTTTACAATATATTT
Found at i:37631053 original size:34 final size:34
Alignment explanation
Indices: 37630979--37631092 Score: 92
Period size: 30 Copynumber: 3.4 Consensus size: 34
37630969 ATGTTGCTAC
* * * * **
37630979 TATTTTATTGTTATTGTTTAGATATTATATAAAACT
1 TATTTTATTGTTAAT-TTT-GTTATTATTTTAAAGG
37631015 TATTTTATTGTTAATTTTGTTATTATTTTAAAGG
1 TATTTTATTGTTAATTTTGTTATTATTTTAAAGG
* *
37631049 TA---T-TTGTTAATTTTGTTATTAATTTAGAGG
1 TATTTTATTGTTAATTTTGTTATTATTTTAAAGG
**
37631079 TATTTGCTTGTTAA
1 TATTTTATTGTTAA
37631093 GTTATATTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
30 27 0.42
31 1 0.02
34 20 0.31
35 3 0.05
36 14 0.22
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (34 bp):
TATTTTATTGTTAATTTTGTTATTATTTTAAAGG
Found at i:37631056 original size:30 final size:30
Alignment explanation
Indices: 37631022--37631084 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
37631012 ACTTATTTTA
*
37631022 TTGTTAATTTTGTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTAATTTAAAGGTAT
*
37631052 TTGTTAATTTTGTTATTAATTTAGAGGTAT
1 TTGTTAATTTTGTTATTAATTTAAAGGTAT
37631082 TTG
1 TTG
37631085 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.00, G:0.16, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAATTTAAAGGTAT
Found at i:37631222 original size:11 final size:11
Alignment explanation
Indices: 37631206--37631236 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37631196 TATATATATG
37631206 TAAAAATTATA
1 TAAAAATTATA
*
37631217 TAAAAATAATA
1 TAAAAATTATA
37631228 TAAAAATTA
1 TAAAAATTA
37631237 ATATGAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:37631233 original size:12 final size:11
Alignment explanation
Indices: 37631206--37631240 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
37631196 TATATATATG
*
37631206 TAAAAATTATA
1 TAAAAATAATA
37631217 TAAAAATAATA
1 TAAAAATAATA
37631228 TAAAAATTAATA
1 TAAAAA-TAATA
37631240 T
1 T
37631241 GAACAAGCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:37643656 original size:60 final size:60
Alignment explanation
Indices: 37643586--37643727 Score: 230
Period size: 60 Copynumber: 2.4 Consensus size: 60
37643576 GGCTTTGTCG
*
37643586 ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCTTATAGAGTCAAATCTGA
1 ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGA
* * *
37643646 ATTACCAGTCCATGCTAAATCCTTTATATGACAAAGAACTTCATATAGAGTCAAATCTGG
1 ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGA
* *
37643706 ATTACCAATCCAGGATAAATCC
1 ATTACCAGTCCAGGCTAAATCC
37643728 AATCAATTAG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 75 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (60 bp):
ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGA
Found at i:37656535 original size:60 final size:60
Alignment explanation
Indices: 37656466--37656607 Score: 239
Period size: 60 Copynumber: 2.4 Consensus size: 60
37656456 GGCTTTGTCG
*
37656466 ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCTTATAGAGTCAAATCTGA
1 ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGA
* *
37656526 ATTACCAGTCCATGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGG
1 ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGA
* *
37656586 ATTACCAATCCAGGATAAATCC
1 ATTACCAGTCCAGGCTAAATCC
37656608 AATCAATTAG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (60 bp):
ATTACCAGTCCAGGCTAAATCCTTTATATGACAAAGAACTCCATATAGAGTCAAATCTGA
Found at i:37659103 original size:71 final size:71
Alignment explanation
Indices: 37659025--37659379 Score: 192
Period size: 71 Copynumber: 5.1 Consensus size: 71
37659015 TAATTTCGGT
37659025 CAAAATATAAAAGATATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGT
1 CAAAATATAAAAGATATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGT
37659090 TTCATA
66 TTCATA
** * * * * ** *
37659096 -AAAA-ATATTA-AT-TG--TA-T-ATATT-TTATCGAATTTATTAATATAAACAATTATATTAA
1 CAAAATATAAAAGATATGAAAATTAATATTCTTTTGGAA---A-GAATATAATTAA-TATATGAA
**
37659152 TTAATTTCA-A
61 TTTGTTTCATA
* * * *
37659162 TCAAAATATAAAAGACATGGAAATTAATCTTCTTTTGGAAAGAATATAATTAATATAAGAATTTG
1 -CAAAATATAAAAGATATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTG
*
37659227 ATTCATA
65 TTTCATA
* ** ** * * * *
37659234 TAAAATATTAATTG-TAT-ATATTTTACCGA-ATT-TATT-AAAATAA-ACAATT-ATAT-T-AA
1 CAAAATA-TAAAAGATATGA-AAATTA---ATATTCTTTTGGAAAGAATATAATTAATATATGAA
**
37659290 TTAATTTCAGT-
61 TTTGTTTCA-TA
* * *
37659301 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGACTTTGA
1 CAAAATATAAAAGATATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGT
37659366 TTCATA
66 TTCATA
37659372 CAAAATAT
1 CAAAATAT
37659380 TAATTTTATA
Statistics
Matches: 196, Mismatches: 56, Indels: 64
0.62 0.18 0.20
Matches are distributed among these distances:
62 6 0.03
63 5 0.03
64 2 0.01
65 5 0.03
66 17 0.09
67 41 0.21
68 13 0.07
69 16 0.08
70 12 0.06
71 46 0.23
72 17 0.09
73 4 0.02
74 2 0.01
75 4 0.02
76 6 0.03
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (71 bp):
CAAAATATAAAAGATATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGT
TTCATA
Found at i:37659168 original size:67 final size:66
Alignment explanation
Indices: 37658958--37659308 Score: 148
Period size: 67 Copynumber: 5.1 Consensus size: 66
37658948 TTGGTTCATA
*
37658958 CAAAATATTAATTGTATATATTTTA-CTGAATTTATTAATATAAACAGTTATATTAATTAATTTC
1 CAAAATATTAATTGTATATATTTTATC-GAATTTATTAA-ATAAACAATTATATTAATTAATTTC
**
37659022 GGT
64 AAT
** * * * * * *
37659025 CAAAATA-TAAAAGATATGAAAATTAAT---ATTCTTTTGGAAAGAATATAATTAATATATGAAT
1 CAAAATATTAATTG-TAT-ATATTTTATCGAATT-TATT--AAATAA-ACAATT-ATAT-T-AAT
**
37659086 TTGTTTC-AT
57 TAATTTCAAT
*
37659095 AAAAAATATTAATTGTATATATTTTATCGAATTTATTAATATAAACAATTATATTAATTAATTTC
1 -CAAAATATTAATTGTATATATTTTATCGAATTTATTAA-ATAAACAATTATATTAATTAATTTC
37659160 AAT
64 AAT
** * * * *** * * * *
37659163 CAAAATA-TAAAAG-ACATGGAAATTAATCTTCTTT-TGGAAAGAATATAATTAATATAAGAATT
1 CAAAATATTAATTGTATAT---ATTTTATCGAATTTAT-TAAATAA-ACAATT-ATAT--TAA-T
*
37659225 TGA-TTCATAT
57 TAATTTCA-AT
*
37659235 -AAAATATTAATTGTATATATTTTACCGAATTTATTAAAATAAACAATTATATTAATTAATTTCA
1 CAAAATATTAATTGTATATATTTTATCGAATTTATT-AAATAAACAATTATATTAATTAATTTCA
*
37659299 GT
65 AT
37659301 CAAAATAT
1 CAAAATAT
37659309 AAAAGACATG
Statistics
Matches: 199, Mismatches: 52, Indels: 66
0.63 0.16 0.21
Matches are distributed among these distances:
65 6 0.03
66 15 0.08
67 44 0.22
68 30 0.15
69 16 0.08
70 28 0.14
71 38 0.19
72 16 0.08
73 6 0.03
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (66 bp):
CAAAATATTAATTGTATATATTTTATCGAATTTATTAAATAAACAATTATATTAATTAATTTCAA
T
Found at i:37659186 original size:138 final size:138
Alignment explanation
Indices: 37658929--37659491 Score: 880
Period size: 138 Copynumber: 4.1 Consensus size: 138
37658919 GAGAACATAG
*
37658929 ATATAATTAATATATGAATTTGGTTCATACAAAATATTAATTGTATATATTTTA-CTGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATC-GAATTTAT
* ** *
37658993 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGATATGAAAATTAATATTCTT
65 TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTT
37659058 TTGGAAAGA
130 TTGGAAAGA
* *
37659067 ATATAATTAATATATGAATTTGTTTCATAAAAAATATTAATTGTATATATTTTATCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATT
* *
37659132 AATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGGAAATTAATCTTCTTT
66 AATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTTT
37659197 TGGAAAGA
131 TGGAAAGA
* * *
37659205 ATATAATTAATATAAGAATTTGATTCATATAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATT
* *
37659270 AAAATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTTT
37659335 TGGAAAGA
131 TGGAAAGA
* *
37659343 ATATAATTAATATATGACTTTGATTCATACAAAATATTAATTTTATATATTTTAAT-GAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTT-ATCGAATTTAT
* * * * *
37659407 TAATATAAATAATTATATTAATTAATTCCTATCAATATATAAAAGACAT-AGAAATTAATACTCT
65 TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGA-AAATTAATATTCT
*
37659471 TTTGGAAATA
129 TTTGGAAAGA
37659481 ATATAATTAAT
1 ATATAATTAAT
37659492 TTTTCTAACT
Statistics
Matches: 393, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
137 1 0.00
138 390 0.99
139 2 0.01
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATT
AATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGAAAATTAATATTCTTT
TGGAAAGA
Found at i:37663403 original size:40 final size:40
Alignment explanation
Indices: 37663347--37663558 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
37663337 CATTTGAATG
* *
37663347 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
37663387 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGACTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGATT
* * *
37663427 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
37663467 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
37663507 AAATCCGAGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
37663547 ATATCC-GGCTAA
1 ATATCCGGGCTAA
37663559 ATTCCGAAGA
Statistics
Matches: 136, Mismatches: 34, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
39 7 0.05
40 127 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:37663487 original size:80 final size:79
Alignment explanation
Indices: 37663351--37663567 Score: 301
Period size: 80 Copynumber: 2.7 Consensus size: 79
37663341 TGAATGATAT
*
37663351 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
37663416 TGCGACTTGCTATAC
65 TGCGACTTACTAAAC
37663431 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
* *
37663496 TGCGAGTTACTAAAT
65 TGCGACTTACTAAAC
* * * * * *
37663511 CCGAGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
37663568 AAACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.10
80 110 0.89
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGACTTACTAAAC
Found at i:37666006 original size:25 final size:25
Alignment explanation
Indices: 37665968--37666061 Score: 73
Period size: 25 Copynumber: 3.8 Consensus size: 25
37665958 GCCCATTTTC
*
37665968 ACAGCTCGTATGAGTATACTGATTT
1 ACAGCTCATATGAGTATACTGATTT
* *
37665993 ACAGCTCATGTGAGCATACCT-ATTT
1 ACAGCTCATATGAGTATA-CTGATTT
* ** * * *
37666018 ATAGCTTGTATGAGTATACCGGTTC
1 ACAGCTCATATGAGTATACTGATTT
* *
37666043 ACAGCTCATGTGAGAATAC
1 ACAGCTCATATGAGTATAC
37666062 ATGTACAAGA
Statistics
Matches: 51, Mismatches: 16, Indels: 4
0.72 0.23 0.06
Matches are distributed among these distances:
24 1 0.02
25 48 0.94
26 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (25 bp):
ACAGCTCATATGAGTATACTGATTT
Found at i:37667024 original size:45 final size:45
Alignment explanation
Indices: 37666954--37667058 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
37666944 CTATAAGTTA
* *
37666954 GTTGCTCATTTTGACCAAATAGAGTACATGATTAAATATGTTTCCAT
1 GTTG-TCA-TTTGAGCAAATAGAGTACATGATTAAACATGTTTCCAT
* *
37667001 GTTGTCATTTGAGCAAATGGAGTACATGGTTAAACATGTTTCCAT
1 GTTGTCATTTGAGCAAATAGAGTACATGATTAAACATGTTTCCAT
37667046 GTTGTCATTTGAG
1 GTTGTCATTTGAG
37667059 GTGCCTAATG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 47 0.87
46 3 0.06
47 4 0.07
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (45 bp):
GTTGTCATTTGAGCAAATAGAGTACATGATTAAACATGTTTCCAT
Found at i:37674806 original size:44 final size:42
Alignment explanation
Indices: 37674735--37674879 Score: 118
Period size: 42 Copynumber: 3.4 Consensus size: 42
37674725 TGTGATTTCG
*
37674735 TGTAAGACCACATCTGGGGCATTGGCATCGACT-TCTGTTTTACA
1 TGTAAGACCACATCTGGGACA-TGGCATCGA-TATCTG-TTTACA
** *
37674779 TGTAAGACCATGTCTGGGACATCGGCATCG-TATCTGATTT-CG
1 TGTAAGACCACATCTGGGACAT-GGCATCGATATCTG-TTTACA
* * * *
37674821 TGTAAGACC-CTATCTGAGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-ATCTGGGACA-TGGCATCGATATCTGTTTACA
*
37674864 TGTAAGACCACGTCTG
1 TGTAAGACCACATCTG
37674880 AGACGTTGAC
Statistics
Matches: 81, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
42 28 0.35
43 27 0.33
44 26 0.32
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATGGCATCGATATCTGTTTACA
Found at i:37674848 original size:42 final size:41
Alignment explanation
Indices: 37674727--37674851 Score: 119
Period size: 42 Copynumber: 2.9 Consensus size: 41
37674717 TTTCGTTATG
*
37674727 TGATTTCGTGTAAGACCAC-ATCTGGGGCATTGGCATCGACTTC
1 TGATTTCGTGTAAGACC-CTATCTGGGACA-TGGCATCGAC-TC
* * * *
37674770 TGTTTTACATGTAAGACCATGTCTGGGACATCGGCATCGTA-TC
1 TGATTT-CGTGTAAGACCCTATCTGGGACAT-GGCATCG-ACTC
*
37674813 TGATTTCGTGTAAGACCCTATCTGAGACAGTGGCATCGA
1 TGATTTCGTGTAAGACCCTATCTGGGACA-TGGCATCGA
37674852 TGTTTGATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 26 0.39
43 14 0.21
44 25 0.37
45 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTATCTGGGACATGGCATCGACTC
Found at i:37678573 original size:42 final size:42
Alignment explanation
Indices: 37678526--37678613 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
37678516 TAAGTTAGTG
37678526 TCTGAGTATAAGTCTGAGTATCTGAGACTGAGCCGGTATGCT
1 TCTGAGTATAAGTCTGAGTATCTGAGACTGAGCCGGTATGCT
* *
37678568 TCTGAGTATGAGTTTGAGTATCTGAGACTGAGCCGGTATGCT
1 TCTGAGTATAAGTCTGAGTATCTGAGACTGAGCCGGTATGCT
37678610 TCTG
1 TCTG
37678614 GGATTGTCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (42 bp):
TCTGAGTATAAGTCTGAGTATCTGAGACTGAGCCGGTATGCT
Found at i:37678613 original size:22 final size:22
Alignment explanation
Indices: 37678546--37678613 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
37678536 AGTCTGAGTA
37678546 TCTGAGACTGAGCCGGTATGCT
1 TCTGAGACTGAGCCGGTATGCT
***
37678568 TCTGAGTA-TGAGTTTG-A-G-T
1 TCTGAG-ACTGAGCCGGTATGCT
37678587 ATCTGAGACTGAGCCGGTATGCT
1 -TCTGAGACTGAGCCGGTATGCT
37678610 TCTG
1 TCTG
37678614 GGATTGTCGC
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
19 2 0.06
20 12 0.35
21 2 0.06
22 16 0.47
23 2 0.06
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.32
Consensus pattern (22 bp):
TCTGAGACTGAGCCGGTATGCT
Found at i:37684228 original size:26 final size:27
Alignment explanation
Indices: 37684199--37684258 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
37684189 CCACATATAT
*
37684199 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
37684225 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
37684252 ATATCTG
1 ATATCTG
37684259 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:37690896 original size:14 final size:15
Alignment explanation
Indices: 37690877--37690906 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37690867 GTTTATTATA
37690877 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
37690891 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
37690906 T
1 T
37690907 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:37691761 original size:43 final size:43
Alignment explanation
Indices: 37691700--37691816 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
37691690 GATATTTGGG
* * * *
37691700 CTTCGGGCCTAGCAGGCTATAATGTCGGTGAGATAATATCGGC
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCGGC
* *
37691743 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGATATCGGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCGGC
* * *
37691786 CTTCAAGCCTAGTAGGC-AAAATGCCAGTGAA
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAA
37691817 TGAGTTCAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 13 0.20
43 52 0.80
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCGGC
Found at i:37696899 original size:40 final size:40
Alignment explanation
Indices: 37696801--37697103 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
37696791 TCCTCGTTCA
* * * * *
37696801 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37696840 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37696880 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37696920 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37696960 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37697000 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
37697040 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37697080 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37697104 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37719991 original size:38 final size:38
Alignment explanation
Indices: 37719849--37720003 Score: 179
Period size: 38 Copynumber: 4.0 Consensus size: 38
37719839 TCGGATGATA
* * **
37719849 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCA-TTGTGCGAGTTACT-AT
* *
37719889 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGCTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAT
* *
37719927 -TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAT
*
37719965 ACCGGGCTAAGTCCCGAAGGCATTGTGCAAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAT
37720003 A
1 A
37720004 AATCCGGCAT
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
37 20 0.20
38 31 0.31
39 29 0.29
40 18 0.18
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
ACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAT
Found at i:37722690 original size:41 final size:41
Alignment explanation
Indices: 37722625--37722704 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
37722615 TACAGGGGTT
*
37722625 TTCACACGGCATGGCACACGCCCGTGTCCATGGCCCGTGTCC
1 TTCACACGGCATGGCACACGCCCGTGTCC-TAGCCCGTGTCC
37722667 TTCACACGGCCAT-G-ACACGCCCGTGTCCTAGCCCGTGT
1 TTCACACGG-CATGGCACACGCCCGTGTCCTAGCCCGTGT
37722705 GTAAAAACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 9 0.25
41 14 0.39
42 10 0.28
43 3 0.08
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (41 bp):
TTCACACGGCATGGCACACGCCCGTGTCCTAGCCCGTGTCC
Found at i:37723694 original size:47 final size:47
Alignment explanation
Indices: 37723619--37723822 Score: 163
Period size: 46 Copynumber: 4.4 Consensus size: 47
37723609 GCCGTGGCCT
* * * *
37723619 AGACACGGTCTTACACTGGCTCAT-ATCTC-AAGTCGAAGCCATGTCCC
1 AGACATGGTCTTACACTGACT-ATCATCTCGAAGCCGATG-CATGTCCC
* *
37723666 AGACATGGTCTTACACTGACTATCATCTCGTAGCCGACGCATGTCCC
1 AGACATGGTCTTACACTGACTATCATCTCGAAGCCGATGCATGTCCC
* * **
37723713 AGACAT-GTCTTACACTGGCT-TACATCTCGAAGCCGATGCATTTCTT
1 AGACATGGTCTTACACTGACTAT-CATCTCGAAGCCGATGCATGTCCC
* * * *
37723759 AGACAT-GTCTTATACT-AGC-ACTCGTCTC-AATGCTGATGCCACGTCCC
1 AGACATGGTCTTACACTGA-CTA-TCATCTCGAA-GCCGATG-CATGTCCC
37723806 AGACATGGTCTTACACT
1 AGACATGGTCTTACACT
37723823 AGCTCACACA
Statistics
Matches: 128, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 61 0.48
47 49 0.38
48 15 0.12
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
AGACATGGTCTTACACTGACTATCATCTCGAAGCCGATGCATGTCCC
Found at i:37734080 original size:42 final size:42
Alignment explanation
Indices: 37733974--37734129 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
37733964 AGTATCGTAC
* * * * *
37733974 CAATGCCATATCCTAGATATAGTCTTACATGTAATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * * * *
37734016 CGATGGCAATAGCCCAGCTATGGTCTTACACGAAATATCATAT
1 CAAT-GCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* *
37734059 CAATGCCATATCCCAGATATGGTCTTAAACGACATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
37734101 CAATGCCATATCCCAGATATGGTCTTACA
1 CAATGCCATATCCCAGATATGGTCTTACA
37734130 TGTAATCTTA
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:37736005 original size:42 final size:42
Alignment explanation
Indices: 37735823--37735987 Score: 172
Period size: 42 Copynumber: 4.0 Consensus size: 42
37735813 GCCTAGTTTA
* * * * * *
37735823 ATACACCGGCAT-AGAGCCTGCTAGTCAATAAACCTGATTTA
1 ATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTAATATC
* * * * *
37735864 ATAAACCGACAT-AAAGCTTGATAGGCAATAAGCCTGATATC
1 ATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTAATATC
** * *
37735905 ATACACTAGCATCAAAGCCTGTTAGGCAATAAGCCTGATATC
1 ATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTAATATC
*
37735947 ATACACCGGCATCAAAGCCTGCTAGGCAATAAGTCTAATAT
1 ATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTAATAT
37735988 TATATCACTG
Statistics
Matches: 103, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
41 40 0.39
42 63 0.61
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTAATATC
Found at i:37736005 original size:84 final size:83
Alignment explanation
Indices: 37735837--37735996 Score: 194
Period size: 83 Copynumber: 1.9 Consensus size: 83
37735827 ACCGGCATAG
* * * *
37735837 AGCCTGCTAGTCAATAAACCTGATTTAATAAACCGACATAAAGCTTGATAGGCAATAAGCCTGAT
1 AGCCTGCTAGGCAATAAACCTGATATAATAAACCGACATAAAGCCTGATAGGCAATAAGCCTAAT
37735902 ATCATACACTAGCATCAA
66 ATCATACACTAGCATCAA
* * * * * * *
37735920 AGCCTGTTAGGCAATAAGCCTGATATCATACACCGGCATCAAAGCCTGCTAGGCAATAAGTCTAA
1 AGCCTGCTAGGCAATAAACCTGATATAATAAACCGACAT-AAAGCCTGATAGGCAATAAGCCTAA
*
37735985 TATTATATCACT
65 TATCATA-CACT
37735997 GTTACAAAGT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
83 32 0.51
84 27 0.43
85 4 0.06
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (83 bp):
AGCCTGCTAGGCAATAAACCTGATATAATAAACCGACATAAAGCCTGATAGGCAATAAGCCTAAT
ATCATACACTAGCATCAA
Found at i:37741170 original size:32 final size:32
Alignment explanation
Indices: 37741131--37741196 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
37741121 GAATTTTTAA
37741131 ATCATATTATATTGTTATTACACTTTAAAACT
1 ATCATATTATATTGTTATTACACTTTAAAACT
37741163 ATCATATTATATTGTTATTACACTTTAAAACT
1 ATCATATTATATTGTTATTACACTTTAAAACT
37741195 AT
1 AT
37741197 GTTTGTTGCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (32 bp):
ATCATATTATATTGTTATTACACTTTAAAACT
Found at i:37741619 original size:34 final size:34
Alignment explanation
Indices: 37741567--37741631 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
37741557 AGATGCTGTT
* *
37741567 TGGGCTTGAGCCCGTTACAGTATCAGTATCAACG
1 TGGGCTTGAGCCCATTACAGTAACAGTATCAACG
*
37741601 TGGGTCTT-AGCCCATTACAGTAAGAGTATCA
1 TGGG-CTTGAGCCCATTACAGTAACAGTATCA
37741632 GTGCAGTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 24 0.89
35 3 0.11
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (34 bp):
TGGGCTTGAGCCCATTACAGTAACAGTATCAACG
Found at i:37750635 original size:14 final size:14
Alignment explanation
Indices: 37750605--37750645 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
37750595 AATTAGGTAA
*
37750605 ATAATATAAATGTT
1 ATAATATAAATGAT
37750619 ATAATATAACAT-AT
1 ATAATATAA-ATGAT
37750633 ATAATA-AAATGAT
1 ATAATATAAATGAT
37750646 GTTCATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 2 0.08
13 4 0.17
14 16 0.67
15 2 0.08
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (14 bp):
ATAATATAAATGAT
Found at i:37751922 original size:12 final size:13
Alignment explanation
Indices: 37751905--37751943 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
37751895 GGTATATAAG
37751905 TAAATTA-AATAT
1 TAAATTATAATAT
37751917 TAAATTATATATAT
1 TAAATTATA-ATAT
*
37751931 TATATTATAATAT
1 TAAATTATAATAT
37751944 AAAACATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 7 0.29
13 5 0.21
14 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TAAATTATAATAT
Found at i:37764501 original size:27 final size:28
Alignment explanation
Indices: 37764471--37764560 Score: 96
Period size: 27 Copynumber: 3.3 Consensus size: 28
37764461 TTTAGTTTAC
*
37764471 TAAAATTATTGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* * * *
37764498 TAAAAATACTAAAATGCCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
37764525 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
37764552 TAAAATTAC
1 TAAAATTAC
37764561 CAAAGTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 48 0.92
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:37764569 original size:27 final size:27
Alignment explanation
Indices: 37764495--37764569 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
37764485 TACCCTTAGT
* * * * *
37764495 TTGTAAAAATACTAAAATGCCCTCGAT
1 TTGTAAAATTACTCAAATACCTTCGAC
*
37764522 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTACTCAAATACCTTCGAC
37764549 TTGTAAAATTAC-CAAAGTACC
1 TTGTAAAATTACTCAAA-TACC
37764570 CCCGATTTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTCAAATACCTTCGAC
Found at i:37764576 original size:54 final size:54
Alignment explanation
Indices: 37764471--37764577 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
37764461 TTTAGTTTAC
* * * * *
37764471 TAAAATTATTGAAATACCCTTAGTTTGTAAAAATACTAAAATGCCCTCGATTTG
1 TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCCCGATTTG
* * *
37764525 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTT
1 TAAAATTACTGAAATACCCTTAG-CTTGTAAAAATACCAAAATACCCCCGATTT
37764578 ACATAATTAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 5 0.11
54 39 0.89
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (54 bp):
TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCCCGATTTG
Found at i:37764749 original size:27 final size:27
Alignment explanation
Indices: 37764566--37764749 Score: 237
Period size: 27 Copynumber: 6.9 Consensus size: 27
37764556 ATTACCAAAG
* * *
37764566 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37764593 TAGCCC-CGATTTACATAATTACTG-TT
1 TA-CCCTCGATTTACAGAATTACTGTTT
**
37764619 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37764646 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37764673 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37764700 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
37764727 TACTCTCGATTTATAAAATTACT
1 TACCCTCGATTTACAGAATTACT
37764750 AAAATACCCT
Statistics
Matches: 141, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
25 3 0.02
26 19 0.13
27 116 0.82
28 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:37764770 original size:27 final size:27
Alignment explanation
Indices: 37764740--37764979 Score: 194
Period size: 27 Copynumber: 8.8 Consensus size: 27
37764730 TCTCGATTTA
* *
37764740 TAAAATTACTAAAATACCCTTGGTTTT
1 TAAAATTACCAAAATACCCTTGGTTTG
* *
37764767 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCTTGGTTTG
37764794 TAAAATTACCAAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTTGGTTTG
* * ***
37764821 TGAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTTGGTTTG
* * *
37764848 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACCAAAATACCCTTGGTTTG
* * * *
37764875 CAAAGTTA-CAGAAATACCCTTGACTTTC
1 TAAAATTACCA-AAATACCCTTG-GTTTG
** * *
37764903 TAAAAATTATGAAAATACCATTGGTTTA
1 T-AAAATTACCAAAATACCCTTGGTTTG
* * **
37764931 CAAATTTACTGAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTTGGTTTG
* * * *
37764958 TAGATTTACCAAGACACCCTTG
1 TAAAATTACCAAAATACCCTTG
37764980 TAGGATGAAA
Statistics
Matches: 168, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
26 2 0.01
27 143 0.85
28 6 0.04
29 16 0.10
30 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTTGGTTTG
Found at i:37764774 original size:54 final size:54
Alignment explanation
Indices: 37764600--37764883 Score: 185
Period size: 54 Copynumber: 5.3 Consensus size: 54
37764590 TTTTAGCCCC
* * * * * *** *
37764600 GATTTACATAATTACTG-TTTACCCTCGATTTACAGAATTACCATTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTT
* * ****
37764653 GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTT
* * *
37764707 GATTTACAGAATTACTGTTTTACTCTCGATTTATAAAATTACTAAAATACCCTT
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTT
* ** **** * * *
37764761 GGTTTTTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTT
1 GATTTACAAAATTACCGTTTTACCCTCGA-TTTATAAAATTACTAAAATACCCTT
* *** *** * * * *
37764815 GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTT
*
37764869 GATTTACAAAGTTAC
1 GATTTACAAAATTAC
37764884 AGAAATACCC
Statistics
Matches: 192, Mismatches: 36, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
53 17 0.09
54 173 0.90
55 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.37
Consensus pattern (54 bp):
GATTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTT
Found at i:37764774 original size:81 final size:80
Alignment explanation
Indices: 37764599--37764775 Score: 192
Period size: 81 Copynumber: 2.2 Consensus size: 80
37764589 GTTTTAGCCC
* * *
37764599 CGATTTACATAATTACTGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAA
1 CGATTTATAAAATTACTGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
****
37764664 TTACCGTTTTACCCT
66 TTACCAAAATACCCT
* * ** * *
37764679 CGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACTCTCGATTTATAAA
1 CGATTTATAAAATTACTG-TTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAA
*
37764744 ATTACTAAAATACCCT
65 ATTACCAAAATACCCT
* * *
37764760 TGGTTTTTAAAATTAC
1 CGATTTATAAAATTAC
37764776 CAAAATACCC
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
80 16 0.20
81 63 0.80
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (80 bp):
CGATTTATAAAATTACTGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
TTACCAAAATACCCT
Found at i:37765096 original size:27 final size:27
Alignment explanation
Indices: 37765019--37765089 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
37765009 AGGTAAAAAT
*
37765019 ACCGTAAAGCCCCTGTAGGGTAAAGAG
1 ACCGTAAAGCCCCTGTAGGGTAAAGTG
*
37765046 ACCATAAAGCCCCTGTAGGGTAAAGTG
1 ACCGTAAAGCCCCTGTAGGGTAAAGTG
37765073 ACCGTAATA-CCCCTGTA
1 ACCGTAA-AGCCCCTGTA
37765090 TGATAAAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 39 0.98
28 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.18
Consensus pattern (27 bp):
ACCGTAAAGCCCCTGTAGGGTAAAGTG
Found at i:37765101 original size:27 final size:27
Alignment explanation
Indices: 37765014--37765101 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
37765004 CTATTAGGTA
37765014 AAAAT-ACCGTAAAGCCCCTGTAGGGT
1 AAAATGACCGTAAAGCCCCTGTAGGGT
*
37765040 AAAGA-GACCATAAAGCCCCTGTAGGGT
1 AAA-ATGACCGTAAAGCCCCTGTAGGGT
* * *
37765067 AAAGTGACCGTAATA-CCCCTGTATGAT
1 AAAATGACCGTAA-AGCCCCTGTAGGGT
37765094 AAAATGAC
1 AAAATGAC
37765102 GAATATGCCC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.06
27 48 0.92
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
AAAATGACCGTAAAGCCCCTGTAGGGT
Found at i:37766150 original size:42 final size:42
Alignment explanation
Indices: 37766091--37766182 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37766081 TAGTCTCCCC
* ** *
37766091 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37766133 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37766175 AAATGGGC
1 AAATGGGC
37766183 CTATAGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Done.