Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 135 of 259
Found at i:43873186 original size:38 final size:41
Alignment explanation
Indices: 43873135--43873223 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 41
43873125 AAAAATTATA
* * *
43873135 TTTAATACAATAAAACATTTATTATA-TTAT-TTA-TGTTT
1 TTTAATATAATAAAACATTTATGATATTTATGGTAGTGTTT
*
43873173 TTTAATATAATAAAATATTTATGATATTTATGGTAGTGTTT
1 TTTAATATAATAAAACATTTATGATATTTATGGTAGTGTTT
43873214 TTTAATATAA
1 TTTAATATAA
43873224 ATACTTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 23 0.52
39 4 0.09
40 2 0.05
41 15 0.34
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (41 bp):
TTTAATATAATAAAACATTTATGATATTTATGGTAGTGTTT
Found at i:43877878 original size:2 final size:2
Alignment explanation
Indices: 43877871--43877897 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
43877861 GTTTATAGTA
43877871 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
43877898 TGAAGAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:43883219 original size:27 final size:26
Alignment explanation
Indices: 43883162--43883236 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 26
43883152 CATATTTTTC
* *
43883162 CAAAATTTTACCAGGGTTAAAATCGT
1 CAAAATTTTACTAGGGGTAAAATCGT
* *
43883188 CAAATTTTTACTAGGGGTAAAATTGT
1 CAAAATTTTACTAGGGGTAAAATCGT
* *
43883214 CAAAATTTTGCTAAGGGTAAAAT
1 CAAAATTTTACTAGGGGTAAAAT
43883237 AGGGATGAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (26 bp):
CAAAATTTTACTAGGGGTAAAATCGT
Found at i:43892763 original size:39 final size:40
Alignment explanation
Indices: 43892662--43892885 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
43892652 TTGAATGATG
*
43892662 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
43892701 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
43892742 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
43892781 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
43892820 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
43892859 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
43892886 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 74 0.45
40 77 0.47
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:43892837 original size:79 final size:81
Alignment explanation
Indices: 43892662--43892885 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
43892652 TTGAATGATG
* * *
43892662 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
43892724 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
43892742 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
* *
43892804 TGTGCGAGTTATTAAA
66 TGTGCGAGATACTAAA
* * * * *
43892820 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
43892884 TG
66 TG
43892886 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 54 0.42
80 37 0.29
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:43892907 original size:79 final size:79
Alignment explanation
Indices: 43892662--43892918 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
43892652 TTGAATGATG
* * * *
43892662 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
43892724 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
43892742 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** * *
43892806 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* *
43892820 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
43892884 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
43892900 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
43892919 TACGTGATTT
Statistics
Matches: 152, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 35 0.23
79 68 0.45
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:43899641 original size:39 final size:40
Alignment explanation
Indices: 43899537--43899760 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
43899527 TTGAATGATG
*
43899537 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
43899576 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
43899617 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
43899656 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
43899695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
43899734 AACCGGGCTATGTCCCAAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
43899761 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 73 0.45
40 75 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:43899711 original size:79 final size:81
Alignment explanation
Indices: 43899537--43899760 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
43899527 TTGAATGATG
* * *
43899537 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCAAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCAAAGGCA
*
43899599 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
*
43899617 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCAAAGGCATT
* *
43899679 TGTGCGAGTTATTAAA
66 TGTGCGAGATACTAAA
* * * * *
43899695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCAAAGGCATT
43899759 TG
66 TG
43899761 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 35 0.28
79 54 0.43
80 36 0.29
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCAAAGGCATT
TGTGCGAGATACTAAA
Found at i:43899782 original size:79 final size:79
Alignment explanation
Indices: 43899537--43899793 Score: 215
Period size: 79 Copynumber: 3.3 Consensus size: 79
43899527 TTGAATGATG
* * * *
43899537 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCAAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCAAAGGCA
** *
43899599 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * *
43899617 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTG
** * *
43899681 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* *
43899695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATT
*
43899759 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
43899775 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
43899794 TACGTGATTT
Statistics
Matches: 150, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 34 0.23
79 68 0.45
80 46 0.31
81 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTG
AACGAGTGACTAAA
Found at i:43907940 original size:3 final size:3
Alignment explanation
Indices: 43907932--43907961 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
43907922 ATATATATAT
43907932 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
43907962 TACAAGATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:43919680 original size:27 final size:27
Alignment explanation
Indices: 43919650--43919827 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
43919640 ATATTGAGTC
* * *
43919650 CGCACACTCAATGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
43919677 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
43919704 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
43919732 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
43919759 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
43919786 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
43919813 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43919828 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:43919791 original size:82 final size:81
Alignment explanation
Indices: 43919671--43919826 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43919661 TGCTATATAA
* *
43919671 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43919736 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43919753 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43919817 CACTTAGTGC
65 CACTTAGTGC
43919827 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43927779 original size:27 final size:27
Alignment explanation
Indices: 43927749--43927926 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
43927739 ATATTGAGTC
* * * *
43927749 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
43927776 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43927803 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
43927831 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
43927858 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
43927885 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43927912 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43927927 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:43927888 original size:82 final size:81
Alignment explanation
Indices: 43927770--43927925 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43927760 TGCTATATAA
* *
43927770 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43927835 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43927852 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43927916 CACTTAGTGC
65 CACTTAGTGC
43927926 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43938798 original size:22 final size:21
Alignment explanation
Indices: 43938773--43938815 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
43938763 AATTATTAAC
*
43938773 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATT-ATTTT
*
43938795 ATAATAAATTTTGATTATTTT
1 ATAATAAATTTTAATTATTTT
43938816 CTACAGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
ATAATAAATTTTAATTATTTT
Found at i:43939298 original size:42 final size:42
Alignment explanation
Indices: 43939207--43939416 Score: 163
Period size: 42 Copynumber: 5.0 Consensus size: 42
43939197 ACAGATTTAC
* * * *
43939207 AAGTTGTGTATTAATGAAGCTCCCCACATGAGCTTAAGTGAG
1 AAGTTGTGTATTAACGAAGCTCCCTACGTGAGCTTAAGTGAT
*
43939249 AAGTTGTGTATTAGA-GAAACTCCCTACGTGAGCTTAAGTGAT
1 AAGTTGTGTATTA-ACGAAGCTCCCTACGTGAGCTTAAGTGAT
* * * *
43939291 ACA-TTGTGTATCAACGAAGCTCCCTATGTAAGTTTAAGTGAT
1 A-AGTTGTGTATTAACGAAGCTCCCTACGTGAGCTTAAGTGAT
* * * * * * * * * *
43939333 AACTTATTTGTCAGCAAAGCTCCCCATGTGAGCTTAAGTGAC
1 AAGTTGTGTATTAACGAAGCTCCCTACGTGAGCTTAAGTGAT
* * * * * *
43939375 AAGTTATGTATCAGCGAAGCTCCCCAAGCGAGCTTAAGTGAT
1 AAGTTGTGTATTAACGAAGCTCCCTACGTGAGCTTAAGTGAT
43939417 GATGCTCCTC
Statistics
Matches: 139, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
41 2 0.01
42 135 0.97
43 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (42 bp):
AAGTTGTGTATTAACGAAGCTCCCTACGTGAGCTTAAGTGAT
Found at i:43943390 original size:240 final size:236
Alignment explanation
Indices: 43942929--43943582 Score: 766
Period size: 240 Copynumber: 2.7 Consensus size: 236
43942919 TTATAATCAT
* * * * * *
43942929 ATTATTAAAACTAGAAATTCTATTACACGTA--TGGAAATCACAAATTTAGAACACAAATGTATG
1 ATTATTAATACTAGAAATTCTATCACATGTATGTGGAAACCACAAATTTAGAATACAAATGTGTG
* *
43942992 TTTAAAAATAACATCAAATAAATAATCAAACTATGGTTTGAAACTAATTAATAATAACACATGAA
66 TTTAAAAATAACATAAAATAAATAATGAAACTATGGTTTGAAACTAA-TAATAATAACACATGAA
**
43943057 ATATGTATGATATTAAAATGAAAAAAATTAGATCT-AATTGTTTATCATGATGTTGTCATCAATC
130 ATATGTAAAATATTAAAATGAAAAAAATT-GAT-TAAATTGTTTATCATGATGTTG--ATCAATC
* *
43943121 TTCAGCCAGTGCTGAGTTAACTTGTGACACCAATTCAATCAAATAC
191 TTCAGCCAGTGCTGAATTAACTTGTGACACCAACTCAATCAAATAC
* *
43943167 ATTTTTAATACTAGAAATTTTATCACATGTATGTGGAAACCACAAATTTAGAATACAAATGTGTG
1 ATTATTAATACTAGAAATTCTATCACATGTATGTGGAAACCACAAATTTAGAATACAAATGTGTG
43943232 TTTAAAAATAACATAAAATAAATAATGAAACATATGGTTTGAAACTAATAAATAATAACACATGA
66 TTTAAAAATAACATAAAATAAATAATGAAAC-TATGGTTTGAAACTAAT-AATAATAACACATGA
43943297 AATATGTAAAATATTAAAATGAAAAAAATTGATTAAATTGTTTATCATAGTACTGTTG-TCAATC
129 AATATGTAAAATATTAAAATGAAAAAAATTGATTAAATTGTTTATCAT-G-A-TGTTGATCAATC
* * *
43943361 TTGAGTCGGTGCTGAATTAACTTGTGACACCAACTCAATCAAATAC
191 TTCAGCCAGTGCTGAATTAACTTGTGACACCAACTCAATCAAATAC
* * * * *
43943407 ATTATTAATATTAGAAATTCTATCACATGCGTATGCATGTGAAAACCACATATTTAGATTGCATA
1 ATTATTAATACTAGAAATTCTATCACAT--GTATG--TG-G-AAACCACAAATTTAGAATACAAA
* * * * * * *
43943472 GGTGTATTTATAAATAACATAACATAAATAATGAAATGTAAT-ATTTGAAACTAATAATAGTAAC
60 TGTGTGTTTAAAAATAACATAAAATAAATAATGAAA-CT-ATGGTTTGAAACTAATAATAATAAC
* * * *
43943536 ACATGTTTAATATGTACAAA-ACTAAAAT--AAAAAATAGTTTAAATTGT
123 ACATG--AAATATGTA-AAATATTAAAATGAAAAAAATTGATTAAATTGT
43943583 GGGTAAAAGG
Statistics
Matches: 362, Mismatches: 35, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
238 26 0.07
239 1 0.00
240 147 0.41
241 60 0.17
242 6 0.02
243 5 0.01
244 2 0.01
245 31 0.09
246 64 0.18
247 17 0.05
248 3 0.01
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (236 bp):
ATTATTAATACTAGAAATTCTATCACATGTATGTGGAAACCACAAATTTAGAATACAAATGTGTG
TTTAAAAATAACATAAAATAAATAATGAAACTATGGTTTGAAACTAATAATAATAACACATGAAA
TATGTAAAATATTAAAATGAAAAAAATTGATTAAATTGTTTATCATGATGTTGATCAATCTTCAG
CCAGTGCTGAATTAACTTGTGACACCAACTCAATCAAATAC
Found at i:43944882 original size:51 final size:49
Alignment explanation
Indices: 43944822--43944925 Score: 136
Period size: 51 Copynumber: 2.1 Consensus size: 49
43944812 GGATAAATAG
* * *
43944822 GAAACATTTGGAAATGACTATGGTTTTCTCCAAAATGAAAATAGAGAAAT
1 GAAACATTTGGAAACGAATATGGTTTTCTCCAAAATGAAAAT-GAAAAAT
* * *
43944872 GAAATCATTTGGAAACGAATGTGGTTTTTTCCTAAATGAAAATGAAAAAT
1 GAAA-CATTTGGAAACGAATATGGTTTTCTCCAAAATGAAAATGAAAAAT
43944922 GAAA
1 GAAA
43944926 ATGACCTGGA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 14 0.30
51 33 0.70
ACGTcount: A:0.44, C:0.09, G:0.18, T:0.29
Consensus pattern (49 bp):
GAAACATTTGGAAACGAATATGGTTTTCTCCAAAATGAAAATGAAAAAT
Found at i:43944923 original size:13 final size:13
Alignment explanation
Indices: 43944905--43944929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43944895 GTTTTTTCCT
43944905 AAATGAAAATGAA
1 AAATGAAAATGAA
43944918 AAATGAAAATGA
1 AAATGAAAATGA
43944930 CCTGGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAATGAAAATGAA
Found at i:43945221 original size:37 final size:37
Alignment explanation
Indices: 43945180--43945255 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
43945170 AAAGTATTTG
43945180 ATTGAAAGTTAGGACAGTACTTGTAATTGGACCCGAT
1 ATTGAAAGTTAGGACAGTACTTGTAATTGGACCCGAT
43945217 ATTGAAAGTTAGGACAGTACTTGTAATTGGACCCGAT
1 ATTGAAAGTTAGGACAGTACTTGTAATTGGACCCGAT
43945254 AT
1 AT
43945256 AGAAGATGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (37 bp):
ATTGAAAGTTAGGACAGTACTTGTAATTGGACCCGAT
Found at i:43954090 original size:26 final size:26
Alignment explanation
Indices: 43954054--43954112 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
43954044 TATTCTCTTT
43954054 AAATTTTATCAGGGGCAAAATCATCA
1 AAATTTTATCAGGGGCAAAATCATCA
* * *
43954080 AAATTTTATCATGGGTAAAATCGTCA
1 AAATTTTATCAGGGGCAAAATCATCA
*
43954106 AAGTTTT
1 AAATTTT
43954113 GTTGAGGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATTTTATCAGGGGCAAAATCATCA
Found at i:43965449 original size:2 final size:2
Alignment explanation
Indices: 43965442--43965475 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
43965432 ATTGTTTTAA
* *
43965442 AT AT AT AT AT AC AT AT AT AT TT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43965476 TACTTTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43965892 original size:26 final size:27
Alignment explanation
Indices: 43965839--43965949 Score: 82
Period size: 27 Copynumber: 4.0 Consensus size: 27
43965829 AAATCACAAT
* *
43965839 AATTTTAAAATTTAAAATATTTATAAA
1 AATTTCAAAATTTAAAATATTTAAAAA
43965866 AATTTCAAAATTT-AAAT-TTTAAAAAA
1 AATTTCAAAATTTAAAATATTT-AAAAA
* * *
43965892 AATTCTAAAAAAAATCTAAAATATATAAAAA
1 AATT-T---CAAAATTTAAAATATTTAAAAA
* * *
43965923 AATTTTAAATTTTAAAATTTTCTAAAA
1 AATTTCAAAATTTAAAATATT-TAAAA
43965950 CAATAATTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.05
26 12 0.18
27 24 0.36
28 5 0.08
30 7 0.11
31 13 0.20
32 2 0.03
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (27 bp):
AATTTCAAAATTTAAAATATTTAAAAA
Found at i:43965900 original size:12 final size:12
Alignment explanation
Indices: 43965879--43965912 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
43965869 TTCAAAATTT
*
43965879 AAATTTTAAAAA
1 AAATTCTAAAAA
43965891 AAATTCTAAAAA
1 AAATTCTAAAAA
43965903 AAA-TCTAAAA
1 AAATTCTAAAA
43965913 TATATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (12 bp):
AAATTCTAAAAA
Found at i:43968572 original size:41 final size:41
Alignment explanation
Indices: 43968527--43968609 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
43968517 TGCTTTTGTA
43968527 TTCCTATTTCAATTTGGAATTGAATTATTCTCTCTTCTCTT
1 TTCCTATTTCAATTTGGAATTGAATTATTCTCTCTTCTCTT
* * *
43968568 TTCCTATTTCCATTTGGAATTGAATTATTTTCTTTTCTCTT
1 TTCCTATTTCAATTTGGAATTGAATTATTCTCTCTTCTCTT
43968609 T
1 T
43968610 CAAATTGACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.57
Consensus pattern (41 bp):
TTCCTATTTCAATTTGGAATTGAATTATTCTCTCTTCTCTT
Found at i:43972854 original size:30 final size:30
Alignment explanation
Indices: 43972818--43972877 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
43972808 ATTTCATACG
*
43972818 AACTTTTGCAAAATTACATTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
*
43972848 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
43972878 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:43980293 original size:30 final size:30
Alignment explanation
Indices: 43980257--43980316 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
43980247 ATTTAATACG
* *
43980257 AACTTTTGCAAAATTATATTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
*
43980287 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
43980317 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:43999188 original size:27 final size:27
Alignment explanation
Indices: 43999158--43999335 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
43999148 ATATTGAGCC
* *
43999158 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
43999185 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
43999212 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
43999240 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
43999267 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
43999294 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
43999321 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43999336 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:43999297 original size:82 final size:81
Alignment explanation
Indices: 43999179--43999334 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
43999169 TGCTATATAA
* * * *
43999179 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTC-GAATCGCA
43999244 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43999261 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCA
43999325 CACTTAGTGC
65 CACTTAGTGC
43999335 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:44009087 original size:49 final size:50
Alignment explanation
Indices: 44009028--44009158 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 50
44009018 GGGTAAAGTT
* * * *
44009028 CCGATGCCATGCCCCAAACATGGTCTTACACTGGCTATCATCTTAGAG-G
1 CCGATTCCATGTCCCAAACATGGTCTTACACTGGCTATCATATAAGAGTG
* * * **
44009077 CCGATTCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAATCGTG
1 CCGATTCCATGTCCCAAACATGGTCTTACACTGGCTATCATATAAGAGTG
*
44009127 CCGA-TACATGTCCCAAACATGGTCTTACACTG
1 CCGATTCCATGTCCCAAACATGGTCTTACACTG
44009159 ACACATCTCG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
49 64 0.93
50 5 0.07
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (50 bp):
CCGATTCCATGTCCCAAACATGGTCTTACACTGGCTATCATATAAGAGTG
Found at i:44011542 original size:49 final size:50
Alignment explanation
Indices: 44011462--44011694 Score: 267
Period size: 49 Copynumber: 4.7 Consensus size: 50
44011452 ATCTATTGTG
* *
44011462 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
* * * * *
44011512 -GGTCGCATGTGTAGTTCTAAGTGTAGGCTACTATGCGTACCT-GATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTGGATAA-TT
* * * * **
44011562 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GGATAATT
*
44011612 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
* *
44011662 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
44011695 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
49 70 0.45
50 49 0.32
51 36 0.23
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
Found at i:44011599 original size:28 final size:28
Alignment explanation
Indices: 44011567--44011650 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
44011557 AACTTCGATC
44011567 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
44011595 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
44011617 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
44011645 ACGTGT
1 ACGTGT
44011651 ACTGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:44018254 original size:12 final size:12
Alignment explanation
Indices: 44018237--44018262 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44018227 GTGGTCTCAA
44018237 AACTACCATTCT
1 AACTACCATTCT
44018249 AACTACCATTCT
1 AACTACCATTCT
44018261 AA
1 AA
44018263 ATAGGGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (12 bp):
AACTACCATTCT
Found at i:44027805 original size:26 final size:26
Alignment explanation
Indices: 44027753--44027876 Score: 160
Period size: 26 Copynumber: 4.8 Consensus size: 26
44027743 CCTCTTTAAT
* **
44027753 AACTGGGGCA-AAACCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
44027778 AACTGGGGCATAAGCCCTCTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
44027804 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
44027830 AACTAGGGCACAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
***
44027856 AACTACAGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
44027877 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 10 0.11
26 78 0.89
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:44027951 original size:20 final size:20
Alignment explanation
Indices: 44027926--44027982 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
44027916 TTATCATTAC
*
44027926 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
44027945 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
44027966 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
44027983 CCACATATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:44028350 original size:20 final size:21
Alignment explanation
Indices: 44028325--44028364 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
44028315 TGGGCCCGAA
*
44028325 AGCCCAT-TAGGCCCAACTTC
1 AGCCCATCGAGGCCCAACTTC
44028345 AGCCCATCGAGGCCCAACTT
1 AGCCCATCGAGGCCCAACTT
44028365 ACCGTCATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.40, G:0.17, T:0.17
Consensus pattern (21 bp):
AGCCCATCGAGGCCCAACTTC
Found at i:44033475 original size:28 final size:27
Alignment explanation
Indices: 44033443--44033594 Score: 89
Period size: 27 Copynumber: 5.6 Consensus size: 27
44033433 TTAGTTTACC
44033443 AAATTACTGAAATACCCTCGACTTATAA
1 AAATTACTGAAATACCCTCGA-TTATAA
*
44033471 AAATTAC-CAAAGTACCCTCGATT-TATA
1 AAATTACTGAAA-TACCCTCGATTATA-A
* ***
44033498 GAATTACTGTTTTACCCTCGATT-TACA
1 AAATTACTGAAATACCCTCGATTATA-A
*** *
44033525 AAATTACTGTTTTACCCTTGATT-TACA
1 AAATTACTGAAATACCCTCGATTATA-A
* *** * *
44033552 AAATTACCGTTTTACCCTCGATTGT-G
1 AAATTACTGAAATACCCTCGATTATAA
44033578 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
44033595 CTATAGGGAT
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
26 15 0.14
27 72 0.69
28 17 0.16
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTATAA
Found at i:44033513 original size:27 final size:27
Alignment explanation
Indices: 44033483--44033574 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
44033473 ATTACCAAAG
* *
44033483 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
44033510 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
44033537 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
44033564 TACCCTCGATT
1 TACCCTCGATT
44033575 GTGAAATTAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:44033596 original size:27 final size:26
Alignment explanation
Indices: 44033566--44033709 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 26
44033556 TACCGTTTTA
**
44033566 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
44033593 CCCT-ATAGGGATAGAATTACCAAAACAC
1 CCCTGATTGTG--A-AATTACCAAAATAC
* *
44033621 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * **
44033648 CACTAGTTTGTGAAATTACTGAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
44033674 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
44033702 CCCTGATT
1 CCCTGATT
44033710 TACAAAATTA
Statistics
Matches: 88, Mismatches: 22, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
25 4 0.05
26 5 0.06
27 57 0.65
28 20 0.23
30 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:44033710 original size:27 final size:26
Alignment explanation
Indices: 44033607--44033719 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
44033597 ATAGGGATAG
*
44033607 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
* *
44033634 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTA-TTTGTAA
** *
44033661 AATTACTGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CTATTTGTAA
**
44033688 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-ATTTGTAA
44033715 AATTA
1 AATTA
44033720 GAGAAATACC
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 68 0.96
28 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCCTATTTGTAA
Found at i:44033717 original size:81 final size:81
Alignment explanation
Indices: 44033537--44033719 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 81
44033527 ATTACTGTTT
* **** * *
44033537 TACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTGTGAAATTACTGAAATACCCCTATAGG
1 TACCCCTGATTTACAAAATTACCAAAATACCCTAGATTGTGAAATTACTGAAATACCCCAATAGG
*
44033602 GATAGAATTACCAAAA
66 GATAAAATTACCAAAA
* ** *
44033618 CACCCCT-AGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACTGAAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACCAAAATACC-CTAGATTGTGAAATTACTGAAATACCC-CAAT
**
44033682 -TTG-TAAAATTACCAAAA
63 AGGGATAAAATTACCAAAA
44033699 TACCCCTGATTTACAAAATTA
1 TACCCCTGATTTACAAAATTA
44033720 GAGAAATACC
Statistics
Matches: 81, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
80 1 0.01
81 50 0.62
82 27 0.33
83 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
TACCCCTGATTTACAAAATTACCAAAATACCCTAGATTGTGAAATTACTGAAATACCCCAATAGG
GATAAAATTACCAAAA
Found at i:44033718 original size:54 final size:54
Alignment explanation
Indices: 44033627--44033757 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
44033617 ACACCCCTAG
* *** *
44033627 TTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACTGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAATACCCTCAA
* * **
44033681 TTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTAGAGAAATACCTTTGA
1 TTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAGAAATACCCTCAA
***
44033735 TTTGTAGTTTTACCAAAATACCC
1 TTTGTAAAATTACCAAAATACCC
44033758 TTGTAGGATG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 63 0.98
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAATACCCTCAA
Found at i:44033870 original size:25 final size:27
Alignment explanation
Indices: 44033810--44033870 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
44033800 ATTGTAAAGC
* *
44033810 CCCTGTAGGGTAAAGTGACCGTAATAT
1 CCCTGTATGGTAAAATGACCGTAATAT
44033837 CCCTGTATGGTAAAATGA-CG-AATAT
1 CCCTGTATGGTAAAATGACCGTAATAT
44033862 GCCCT-TATG
1 -CCCTGTATG
44033871 TTCCATATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 9 0.29
26 6 0.19
27 16 0.52
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (27 bp):
CCCTGTATGGTAAAATGACCGTAATAT
Found at i:44034703 original size:25 final size:25
Alignment explanation
Indices: 44034664--44034758 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
44034654 AGGAAGTGCT
**
44034664 AAAAGGGCTACGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
44034689 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
44034714 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
44034739 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
44034759 ATTAAAGGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:44034965 original size:42 final size:42
Alignment explanation
Indices: 44034906--44034997 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
44034896 TAGTCTCCCC
*
44034906 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
44034948 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
44034990 AAATGGGC
1 AAATGGGC
44034998 CTGTGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:44035059 original size:31 final size:31
Alignment explanation
Indices: 44035021--44035099 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
44035011 CGTTTGCAAT
*
44035021 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
44035052 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
44035083 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
44035100 AATCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:44038151 original size:26 final size:26
Alignment explanation
Indices: 44038086--44038182 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
44038076 CCTCTTTAAT
44038086 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
44038111 AA-TTGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
44038136 AACTGGGGCATAAGCCCTATTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
44038162 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
44038183 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.09
25 19 0.29
26 40 0.62
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:44038257 original size:20 final size:20
Alignment explanation
Indices: 44038232--44038306 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
44038222 TTATGATTAC
*
44038232 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
44038252 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
44038272 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
44038292 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
44038307 TCCCACATAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:44038263 original size:11 final size:11
Alignment explanation
Indices: 44038232--44038287 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
44038222 TTATGATTAC
44038232 ATCATGTGCAT
1 ATCATGTGCAT
* *
44038243 TTCA--TACAT
1 ATCATGTGCAT
44038252 ATCATGTGCAT
1 ATCATGTGCAT
*
44038263 ATCA--TACAT
1 ATCATGTGCAT
44038272 ATCATGTGCAT
1 ATCATGTGCAT
44038283 ATCAT
1 ATCAT
44038288 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:44038304 original size:9 final size:10
Alignment explanation
Indices: 44038249--44038305 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
44038239 GCATTTCATA
44038249 CATATCATGT
1 CATATCATGT
*
44038259 GCATATCAT-A
1 -CATATCATGT
44038269 CATATCATGT
1 CATATCATGT
*
44038279 GCATATCATAT
1 -CATATCATGT
44038290 CA-ATCATGT
1 CATATCATGT
44038299 -ATATCAT
1 CATATCAT
44038306 ATCCCACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:44044148 original size:13 final size:14
Alignment explanation
Indices: 44044120--44044153 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
44044110 TAATATATTG
*
44044120 ATTATTTTTATGTT
1 ATTATATTTATGTT
44044134 ATTATATTT-TGTT
1 ATTATATTTATGTT
44044147 ATTATAT
1 ATTATAT
44044154 GAGATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
ATTATATTTATGTT
Found at i:44044408 original size:50 final size:50
Alignment explanation
Indices: 44044289--44044583 Score: 252
Period size: 50 Copynumber: 5.9 Consensus size: 50
44044279 ACTGTGAGAA
* *** *
44044289 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTGAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGT
*
44044341 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * *** * * * *
44044391 CGCATATGTAGTACTAAGTGTAGGCTACTATACATACCTGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTT-AGGT
* * ** *
44044442 CACGTGTGCAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * * * * *
44044492 CACGTGTTTAGTACTAAGTACAGGCTATTACGTATACCAAATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* **
44044541 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
44044584 ACTTTAGTTT
Statistics
Matches: 189, Mismatches: 51, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
49 38 0.20
50 78 0.41
51 34 0.18
52 39 0.21
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:44044613 original size:150 final size:151
Alignment explanation
Indices: 44044298--44044616 Score: 385
Period size: 150 Copynumber: 2.1 Consensus size: 151
44044288 ACACATGTGT
* *
44044298 AGTACTATGTGCAGGCTACTATGTGTTGAAGATGGTTTTAGGTCACATGTGTAGTACTAAGTGCA
1 AGTAATATGTGCAGGCTACTATGTGTTGAAGATGG-TTTAGGTCACATGTGTAGTACTAAGTACA
* * *
44044363 GGCTACTACGTGTACCAGATAGTTAGGTCGCATATGTAGTACTAAGTGTAGGCTACTATACATAC
65 GGCTACTACGTATACCAAATAGTTAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATACATAC
* * *
44044428 CTGACAACTTCAATCACGTGTG
130 CAGACAACTTCAATCAAGGGTG
* * * * *
44044450 CAGTACTAAGTGCAGGCTACTATGTGTAT-TAGATGG-TTAGGTCACGTGTTTAGTACTAAGTAC
1 -AGTAATATGTGCAGGCTACTATGTGT-TGAAGATGGTTTAGGTCACATGTGTAGTACTAAGTAC
* * * *
44044513 AGGCTATTACGTATACCAAATTGTT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATA
64 AGGCTACTACGTATACCAAATAGTTAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATACATA
* * *
44044577 CCAGATAACTTTAGTTTCAAGGGTG
129 CCAGACAACTTCA--ATCAAGGGTG
44044602 -GTAATATGTGCAGGC
1 AGTAATATGTGCAGGC
44044617 AACTGTGTAT
Statistics
Matches: 143, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
150 59 0.41
151 45 0.31
152 7 0.05
153 31 0.22
154 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTAATATGTGCAGGCTACTATGTGTTGAAGATGGTTTAGGTCACATGTGTAGTACTAAGTACAG
GCTACTACGTATACCAAATAGTTAGGTCGCATATGTAGTACTAAGTGCAGGCTACTATACATACC
AGACAACTTCAATCAAGGGTG
Found at i:44048209 original size:39 final size:39
Alignment explanation
Indices: 44048155--44048332 Score: 293
Period size: 39 Copynumber: 4.6 Consensus size: 39
44048145 ATCATAATTG
*
44048155 TATGTGCTAGAATTATATCCGGACTTCAGGTCCACAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
44048194 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
* *
44048233 TATGTGCTGAAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
* * *
44048272 TATATGCTGGAATTATATCCGGACTTCAGATCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
*
44048311 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
44048333 GCTTAAATTC
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 131 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCACAGGC
Found at i:44053078 original size:29 final size:29
Alignment explanation
Indices: 44053044--44053117 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
44053034 TAATCAACCG
*
44053044 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
44053073 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
44053102 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
44053118 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:44058983 original size:39 final size:39
Alignment explanation
Indices: 44058929--44059067 Score: 251
Period size: 39 Copynumber: 3.6 Consensus size: 39
44058919 ATCATAATTG
*
44058929 TATGTGCTAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
44058968 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
44059007 TATGTGCTGGAATTATATCCGGACTTCAGATCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
44059046 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
44059068 GCTTAAATTC
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:44073481 original size:27 final size:27
Alignment explanation
Indices: 44073451--44073588 Score: 158
Period size: 27 Copynumber: 5.1 Consensus size: 27
44073441 ACGAAGTCAA
44073451 CAGATATAGATATTGTGGCAGAGCCAC
1 CAGATATAGATATTGTGGCAGAGCCAC
* *
44073478 CAGA-ACAGATATATGTGGCAAAGCCAC
1 CAGATATAGATAT-TGTGGCAGAGCCAC
*
44073505 CAGAT-TAGATAATTGTGGCATAGCCAC
1 CAGATATAGAT-ATTGTGGCAGAGCCAC
*
44073532 CAG-GATAGATATATGTGGCAGAGCCAC
1 CAGATATAGATAT-TGTGGCAGAGCCAC
* *
44073559 CAGAT-CAGATAATTGTGGCATAGCCAC
1 CAGATATAGAT-ATTGTGGCAGAGCCAC
44073586 CAG
1 CAG
44073589 GACACTTCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
26 9 0.09
27 82 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATAGATATTGTGGCAGAGCCAC
Found at i:44073589 original size:54 final size:54
Alignment explanation
Indices: 44073458--44073592 Score: 218
Period size: 54 Copynumber: 2.5 Consensus size: 54
44073448 CAACAGATAT
* * *
44073458 AGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATT
1 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAAAGCCACCAGATC
* *
44073511 AGATAATTGTGGCATAGCCACCAGGATAGATATATGTGGCAGAGCCACCAGATC
1 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAAAGCCACCAGATC
44073565 AGATAATTGTGGCATAGCCACCAGGACA
1 AGATAATTGTGGCATAGCCACCAGGACA
44073593 CTTCCTCCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
53 4 0.05
54 71 0.95
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAAAGCCACCAGATC
Found at i:44076475 original size:26 final size:26
Alignment explanation
Indices: 44076430--44076553 Score: 205
Period size: 26 Copynumber: 4.8 Consensus size: 26
44076420 CCTCTTTAAT
**
44076430 AACTGGGGCA-AAGCCCTTTTCTGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
44076455 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
44076481 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
44076507 AACTGAGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
44076533 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
44076554 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 10 0.11
26 82 0.89
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:44076628 original size:20 final size:20
Alignment explanation
Indices: 44076603--44076659 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
44076593 TTATGATTAC
*
44076603 ATCATGTGCATCTCATA-CA
1 ATCATGTGCATATCATATCA
44076622 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
44076643 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
44076660 CCACATATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:44088166 original size:30 final size:30
Alignment explanation
Indices: 44088130--44088190 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
44088120 CATTTAATAC
*
44088130 AAACTTTTGCAAAATTACATTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
*
44088160 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
44088190 A
1 A
44088191 GGCTCGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:44093959 original size:40 final size:40
Alignment explanation
Indices: 44093865--44094009 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
44093855 TACTCGAATG
* *
44093865 ATATCCGGGCTAAGTCCCGAAGGCTTTTTTGCTCAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGCGACT
* * *
44093906 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACT
* *
44093946 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
* * *
44093986 ATATCTGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
44094010 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
Found at i:44101975 original size:40 final size:40
Alignment explanation
Indices: 44101881--44102025 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
44101871 TACTCGAATG
* *
44101881 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
44101922 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
44101962 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
44102002 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
44102026 CTTGTGTGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:44105100 original size:16 final size:18
Alignment explanation
Indices: 44105073--44105105 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44105063 TCTGAGGTAT
44105073 ATATCTATGAAA-TGATA
1 ATATCTATGAAAGTGATA
44105090 ATATC-ATGAAAGTGAT
1 ATATCTATGAAAGTGAT
44105106 TATGGTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (18 bp):
ATATCTATGAAAGTGATA
Found at i:44105731 original size:57 final size:57
Alignment explanation
Indices: 44105652--44105767 Score: 160
Period size: 57 Copynumber: 2.0 Consensus size: 57
44105642 CCCTAACCCT
* * * * * * *
44105652 TATCCGTCGCCGGATTAGGGTTATGAAGCACTACCGTACAATTAGAGCATTAAAACA
1 TATCCGTCACCGAATCAAGGTTACGAAGCACTACCGTACAATCAGAACATTAAAACA
*
44105709 TATCCGTCACCGAATCAAGGTTACGAAGCACTACCGTATAATCAGAACATTAAAACA
1 TATCCGTCACCGAATCAAGGTTACGAAGCACTACCGTACAATCAGAACATTAAAACA
44105766 TA
1 TA
44105768 CATTTCACAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23
Consensus pattern (57 bp):
TATCCGTCACCGAATCAAGGTTACGAAGCACTACCGTACAATCAGAACATTAAAACA
Found at i:44107470 original size:34 final size:34
Alignment explanation
Indices: 44107245--44107578 Score: 143
Period size: 35 Copynumber: 9.4 Consensus size: 34
44107235 TTGCGCGCAA
* * *
44107245 CACTAGTCCGATAAATCGACAAATGTGTGCTCCAG
1 CACTAGTCAGATAAACCGACGAATGTGTGC-CCAG
* *
44107280 CACTAGTCAGATAAACTGACGGAA-GTTGCGCCCAG
1 CACTAGTCAGATAAACCGAC-GAATG-TGTGCCCAG
* * * *
44107315 CGCTAGTCAGATAAACAGGCGAATGTGTGCCCAA
1 CACTAGTCAGATAAACCGACGAATGTGTGCCCAG
* * * *
44107349 CACTAATTAGAT-AACCTGACGAATAATTGTGAGCCTAG
1 CACTAGTCAGATAAACC-GACG---AA-TGTGTGCCCAG
* ** * * * **
44107387 CTCTAGTTGGATAAACCAACTATATTTGCACCCAG
1 CACTAGTCAGATAAACCGACGA-ATGTGTGCCCAG
** * *
44107422 CGTTAGCCAGATAAACCGACGAATGTGTGCCCAA
1 CACTAGTCAGATAAACCGACGAATGTGTGCCCAG
* ** * *
44107456 CATTAGTCAGATAAACTAACGAATAATTAGTAAGCCTAG
1 CACTAGTCAGATAAACCGACGAAT--GT-GT--GCCCAG
* ** * * * *
44107495 CTCTAGTTGGATAAACCAACGATATTTGCGCCCAT
1 CACTAGTCAGATAAACCGACGA-ATGTGTGCCCAG
* *
44107530 CACTAGTC-GAATAAACCGATGAATGTGTACCCAG
1 CACTAGTCAG-ATAAACCGACGAATGTGTGCCCAG
*
44107564 CATTAGTCAGATAAA
1 CACTAGTCAGATAAA
44107579 TTGGCGAAAG
Statistics
Matches: 219, Mismatches: 62, Indels: 37
0.69 0.19 0.12
Matches are distributed among these distances:
33 3 0.01
34 71 0.32
35 84 0.38
36 8 0.04
37 5 0.02
38 21 0.10
39 25 0.11
40 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (34 bp):
CACTAGTCAGATAAACCGACGAATGTGTGCCCAG
Found at i:44107544 original size:108 final size:107
Alignment explanation
Indices: 44107305--44107578 Score: 370
Period size: 108 Copynumber: 2.6 Consensus size: 107
44107295 CTGACGGAAG
* * * * * * *
44107305 TTGCGCCCAGCGCTAGTCAGATAAACAGGCGAATGTGTGCCCAACACTAATTAGATAACCTGACG
1 TTGCGCCCAGCGCTAGTCAGATAAACCGACGAATGTGTGCCCAACATTAGTCAGATAAACTAACG
* *
44107370 AATAATTGTGAGCCTAGCTCTAGTTGGATAAACCAACTATAT
66 AATAATTGTAAGCCTAGCTCTAGTTGGATAAACCAACGATAT
* * *
44107412 TTGCACCCAGCGTTAGCCAGATAAACCGACGAATGTGTGCCCAACATTAGTCAGATAAACTAACG
1 TTGCGCCCAGCGCTAGTCAGATAAACCGACGAATGTGTGCCCAACATTAGTCAGATAAACTAACG
44107477 AATAATTAGTAAGCCTAGCTCTAGTTGGATAAACCAACGATAT
66 AATAATT-GTAAGCCTAGCTCTAGTTGGATAAACCAACGATAT
* * * * *
44107520 TTGCGCCCATCACTAGTC-GAATAAACCGATGAATGTGTACCCAGCATTAGTCAGATAAA
1 TTGCGCCCAGCGCTAGTCAG-ATAAACCGACGAATGTGTGCCCAACATTAGTCAGATAAA
44107579 TTGGCGAAAG
Statistics
Matches: 145, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
107 63 0.43
108 82 0.57
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (107 bp):
TTGCGCCCAGCGCTAGTCAGATAAACCGACGAATGTGTGCCCAACATTAGTCAGATAAACTAACG
AATAATTGTAAGCCTAGCTCTAGTTGGATAAACCAACGATAT
Found at i:44117630 original size:38 final size:38
Alignment explanation
Indices: 44117588--44117665 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
44117578 TGAAACTCTA
44117588 GGGATTTAATTGGAAATTAAAACAATTCTAACTATTTT
1 GGGATTTAATTGGAAATTAAAACAATTCTAACTATTTT
44117626 GGGATTTAATTGGAAATTAAAACAATTCTAACTATTTT
1 GGGATTTAATTGGAAATTAAAACAATTCTAACTATTTT
44117664 GG
1 GG
44117666 ACTGTTGGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (38 bp):
GGGATTTAATTGGAAATTAAAACAATTCTAACTATTTT
Found at i:44118733 original size:31 final size:31
Alignment explanation
Indices: 44118698--44118756 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
44118688 GTCATTAAGG
44118698 TCTAAAAAGCAGCAGGTATGT-TGTACCAATT
1 TCTAAAAAGCAGCAGGTAT-TATGTACCAATT
* *
44118729 TCTAAAAAGTATCAGGTATTATGTACCA
1 TCTAAAAAGCAGCAGGTATTATGTACCA
44118757 GTGTTGGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (31 bp):
TCTAAAAAGCAGCAGGTATTATGTACCAATT
Found at i:44125766 original size:94 final size:93
Alignment explanation
Indices: 44125552--44125861 Score: 288
Period size: 94 Copynumber: 3.3 Consensus size: 93
44125542 GTTATGTGAG
* * * * * *
44125552 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTTTGGGACAT-GCATCGGCATAGAGATGAGTGCTAGTGTAAGACATG
44125617 TCTGGGACATGCATCAGCAACATCATGAT
65 TCTGGGACATGCATCAGCAACATCATGAT
* * * * *
44125646 AGCTC-GTGTAAGACCACGTTTAGGACATCGCATCGGCATAGAGGTGAGTGCCAATGTAAGACAT
1 AGC-CAGTGTAAGACCATGTTTGGGACAT-GCATCGGCATAGAGATGAGTGCTAGTGTAAGACAT
* * ** * *
44125710 GTCTGGGGCATCCATCAGCCTCAATGATGTT
64 GTCTGGGACATGCATCAGCAAC-ATCATGAT
* * **
44125741 AGCCAGTGTAAGA-CGTGTTTGGGACATGCATCGGC-TA-AGTTTCGTGCTAGTGTAAGACATGT
1 AGCCAGTGTAAGACCATGTTTGGGACATGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGT
* * *
44125803 TTGGGACATGCATCAGC-ACGTATACACGAG
66 CTGGGACATGCATCAGCAAC--AT-CATGAT
* *
44125833 AGCTAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTTTGGGACATG
44125862 GTATCGGCCT
Statistics
Matches: 172, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
90 1 0.01
91 36 0.21
92 16 0.09
93 21 0.12
94 80 0.47
95 18 0.10
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGT
CTGGGACATGCATCAGCAACATCATGAT
Found at i:44131146 original size:27 final size:27
Alignment explanation
Indices: 44130932--44131146 Score: 304
Period size: 27 Copynumber: 8.0 Consensus size: 27
44130922 CAAATTACTA
* *
44130932 AAATAACCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
44130959 AAATAACCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
44130986 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
44131013 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
44131040 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
44131067 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
44131094 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
44131121 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
44131147 ATTTTGCCCC
Statistics
Matches: 172, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 172 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:44131387 original size:25 final size:25
Alignment explanation
Indices: 44131353--44131445 Score: 150
Period size: 25 Copynumber: 3.7 Consensus size: 25
44131343 GAAGAGCTAC
44131353 AAGGGCTTTGCCCCAGTTTACCGAA
1 AAGGGCTTTGCCCCAGTTTACCGAA
*
44131378 AAGGGCTTTGCCCTAGTTTACCGAA
1 AAGGGCTTTGCCCCAGTTTACCGAA
* * *
44131403 AAGGACTTTGCCCCAGTTTATCAAA
1 AAGGGCTTTGCCCCAGTTTACCGAA
44131428 AAGGGCTTTGCCCCAGTT
1 AAGGGCTTTGCCCCAGTT
44131446 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (25 bp):
AAGGGCTTTGCCCCAGTTTACCGAA
Found at i:44131458 original size:24 final size:24
Alignment explanation
Indices: 44131353--44131481 Score: 116
Period size: 25 Copynumber: 5.1 Consensus size: 24
44131343 GAAGAGCTAC
*
44131353 AAGGGCTTTGCCCCAGTTTACCGAA
1 AAGGGCTTTGCCCCAGTTTA-TGAA
* *
44131378 AAGGGCTTTGCCCTAGTTTACCGAA
1 AAGGGCTTTGCCCCAGTTTA-TGAA
* *
44131403 AAGGACTTTGCCCCAGTTTATCAAA
1 AAGGGCTTTGCCCCAGTTTAT-GAA
*
44131428 AAGGGCTTTGCCCCAG-TTATTAA
1 AAGGGCTTTGCCCCAGTTTATGAA
**
44131451 AAGAGGCTAGGCCTCCAGTTATATGATA
1 AAG-GGCTTTGCC-CCAGTT-TATGA-A
44131479 AAG
1 AAG
44131482 TAGCTATGCT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
23 5 0.06
24 11 0.12
25 63 0.72
26 1 0.01
27 4 0.05
28 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAGGGCTTTGCCCCAGTTTATGAA
Found at i:44134617 original size:23 final size:23
Alignment explanation
Indices: 44134574--44134676 Score: 86
Period size: 23 Copynumber: 4.5 Consensus size: 23
44134564 TGAGCTGATG
**
44134574 AACAGTAAGCTCTATTGAGCTAA
1 AACAGTAAGCTCTATCAAGCTAA
* *
44134597 AACGGTAAGCTCTATCAAGCT-G
1 AACAGTAAGCTCTATCAAGCTAA
* *
44134619 AACAGTAAGCTC-ATACAAGTTGA
1 AACAGTAAGCTCTAT-CAAGCTAA
**
44134642 AATGGTAAGCTCTAAT-AAGCTAAA
1 AACAGTAAGCTCT-ATCAAGCT-AA
44134666 AACAGTAAGCT
1 AACAGTAAGCT
44134677 TTTACGAGCT
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
21 2 0.03
22 16 0.26
23 32 0.52
24 10 0.16
25 2 0.03
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTATCAAGCTAA
Found at i:44134686 original size:24 final size:26
Alignment explanation
Indices: 44134659--44134712 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
44134649 AGCTCTAATA
**
44134659 AGCTAAAA-A-CAGTAAGCTTTTACG
1 AGCTAAAATATCAGTAAGCTCATACG
44134683 AGCTAAAATATCAGTAAGCTCATACG
1 AGCTAAAATATCAGTAAGCTCATACG
44134709 AGCT
1 AGCT
44134713 GTGGTGAGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 8 0.31
25 1 0.04
26 17 0.65
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.24
Consensus pattern (26 bp):
AGCTAAAATATCAGTAAGCTCATACG
Found at i:44146069 original size:47 final size:45
Alignment explanation
Indices: 44145911--44146227 Score: 252
Period size: 47 Copynumber: 6.8 Consensus size: 45
44145901 TGGGATATAT
* * *
44145911 TGCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCTCATATACGCG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGG--CTCATCT-C-TG
* * * * *
44145961 AGCTGATG-CATGTCCCAGACATGTCTTACACTAGCACAACTCT-
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCTCTG
* * * * *
44146004 TAGCCAAT-ACGTGTCCCAGACACGTTTTACACTGGCT-ATCTCTG
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCTCTG
*
44146048 TCGAGGCCGATG-CATGTCCCAGACATGTCTTACATTGGCACTCATCTCTG
1 T----GCCGATGCCATGTCCCAGACATGTCTTACACTGG--CTCATCTCTG
*
44146098 TGCCGATGCCATGTCCCAGACATGTCTTACATTGGCACTCATCTCTG
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTGG--CTCATCTCTG
* **
44146145 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCATAAC-G
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGG--CTCATCTCTG
*
44146192 TGGCCGAAG-CATGTCCCAGACATGTCTTACACTGGC
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGGC
44146228 GCACAAATCA
Statistics
Matches: 223, Mismatches: 31, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.02
44 29 0.13
45 1 0.00
46 23 0.10
47 103 0.46
48 32 0.14
49 16 0.07
50 14 0.06
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCTCTG
Found at i:44146163 original size:94 final size:93
Alignment explanation
Indices: 44145912--44146227 Score: 283
Period size: 94 Copynumber: 3.4 Consensus size: 93
44145902 GGGATATATT
* * * * *
44145912 GCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCTCATATACGCGAGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGC-CTCATCT-C-TGTGCCGATGCATGTCCC
* *
44145977 AGACATGTCTTACACTAGCA--CAACTCT-TA
62 AGACATGTCTTACACTGGCACTCATCTCTGTA
* * * * *
44146006 GCCAAT-ACGTGTCCCAGACACGTTTTACACTGG-CT-ATCTCTGTCGAGGCCGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCCTCATCTCTGT----GCCGATGCATGTCCC
*
44146068 AGACATGTCTTACATTGGCACTCATCTCTGT-
62 AGACATGTCTTACACTGGCACTCATCTCTGTA
* *
44146099 GCCGATGCCATGTCCCAGACATGTCTTACATTGGCACTCATCTCTGTGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC-CTCATCTCTGTGCCGATG-CATGTCCCAG
** *
44146164 ACATGGTCTTACACTGG-ATCTCATAAC-GTG
64 ACAT-GTCTTACACTGGCA-CTCATCTCTGTA
*
44146194 GCCGAAG-CATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC
44146228 GCACAAATCA
Statistics
Matches: 182, Mismatches: 25, Indels: 30
0.77 0.11 0.13
Matches are distributed among these distances:
87 1 0.01
88 1 0.01
89 3 0.02
90 2 0.01
91 32 0.18
92 10 0.05
93 29 0.16
94 71 0.39
95 23 0.13
96 2 0.01
97 8 0.04
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCCTCATCTCTGTGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCACTCATCTCTGTA
Found at i:44146197 original size:141 final size:138
Alignment explanation
Indices: 44145912--44146227 Score: 334
Period size: 141 Copynumber: 2.2 Consensus size: 138
44145902 GGGATATATT
* * *
44145912 GCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCTCATATACGCGAGCTGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATACGCGAGCCGATGCATGTCCC
* *
44145977 AGACATGTCTTACACTAGCACAACTCTTAGCCAATACGTGTCCCAGACACGTTTTACACTGGCTA
64 AGACATGTCTTACACTAGCACAACTCTTAGCCAATACATGTCCCAGACACGTCTTACACTGGC-A
**
44146042 TCTCTGTCGAG
128 TCTCTAACGAG
* * * *
44146053 GCCGATGCATGTCCCAGACATGTCTTACATTGGCACTCATCT-C-TGTGCCGATGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATACGCGAGCCGATG-CATGTCCCA
* * * * * * *
44146116 GACATGTCTTACATTGGCACTCATCTCTGT-GTCGATGCCATGTCCCAGACATGGTCTTACACTG
65 GACATGTCTTACACTAGCA--CAACTCT-TAGCCAAT-ACATGTCCCAGACA-CGTCTTACACTG
*
44146180 G-ATCTCATAACGTG
125 GCATCTC-TAACGAG
*
44146194 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
44146228 GCACAAATCA
Statistics
Matches: 148, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
137 7 0.05
138 27 0.18
139 18 0.12
140 29 0.20
141 56 0.38
142 11 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (138 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATACGCGAGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACAACTCTTAGCCAATACATGTCCCAGACACGTCTTACACTGGCATCT
CTAACGAG
Found at i:44146608 original size:30 final size:30
Alignment explanation
Indices: 44146567--44146624 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
44146557 AAATTTACAT
* * *
44146567 CTTTGGTAAAATGACTATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
44146597 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
44146625 TGCCCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:44151719 original size:17 final size:17
Alignment explanation
Indices: 44151692--44151724 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
44151682 TCTCCATTAA
44151692 AAATTTAAAAT-TTTAT
1 AAATTTAAAATGTTTAT
44151708 AAATTATAAAATGTTTA
1 AAATT-TAAAATGTTTA
44151725 AATGGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
AAATTTAAAATGTTTAT
Found at i:44153592 original size:40 final size:40
Alignment explanation
Indices: 44153535--44153644 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 40
44153525 AATTATTGAA
* * * *
44153535 TGAATACACATACGTGCCCCTGTTTGTACTTC-AGTACCCC
1 TGAATGCACATACGTGCCCCTATTTATACTTCGA-TACACC
*
44153575 TGAATGCACATATGTGCCCCTATTTATACTTCGATACACC
1 TGAATGCACATACGTGCCCCTATTTATACTTCGATACACC
* * *
44153615 TAAATGCACTTACGTGCCTCTATTTATACT
1 TGAATGCACATACGTGCCCCTATTTATACT
44153645 CCGGTAACTC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
40 59 0.98
41 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTATACTTCGATACACC
Found at i:44154763 original size:11 final size:11
Alignment explanation
Indices: 44154747--44154772 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44154737 GAATTCGAGG
44154747 TTTTAAAATTA
1 TTTTAAAATTA
44154758 TTTTAAAATTA
1 TTTTAAAATTA
44154769 TTTT
1 TTTT
44154773 TTGTCTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATTA
Found at i:44155306 original size:62 final size:62
Alignment explanation
Indices: 44155236--44155360 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
44155226 AGCTCGTGCC
44155236 TTAATTTTCAAGTTTATTGATGATTTTGTAAAGTGCCATTGATGAATGCTTGAGATTTTGAA
1 TTAATTTTCAAGTTTATTGATGATTTTGTAAAGTGCCATTGATGAATGCTTGAGATTTTGAA
44155298 TTAATTTTCAAGTTTATTGATGATTTTGTAAAGTGCCATTGATGAATGCTTGAGATTTTGAA
1 TTAATTTTCAAGTTTATTGATGATTTTGTAAAGTGCCATTGATGAATGCTTGAGATTTTGAA
44155360 T
1 T
44155361 GATTGTTGAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (62 bp):
TTAATTTTCAAGTTTATTGATGATTTTGTAAAGTGCCATTGATGAATGCTTGAGATTTTGAA
Found at i:44158407 original size:27 final size:27
Alignment explanation
Indices: 44158339--44158438 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 27
44158329 ATACAGAAAA
* * *
44158339 TGTGACAGAGTCACCAGATACAGATATTT
1 TGTGGCAGAGCCACCA-AAACAGATA-TT
* * *
44158368 TGTGACAGTGCCACCAAAACAGATATA
1 TGTGGCAGAGCCACCAAAACAGATATT
* *
44158395 TGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAAAACAGAT-ATT
*
44158423 TGTGGCATAGCCACCA
1 TGTGGCAGAGCCACCA
44158439 GGACGCTTCC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 22 0.37
28 24 0.40
29 14 0.23
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAAAACAGATATT
Found at i:44169323 original size:38 final size:38
Alignment explanation
Indices: 44169258--44169360 Score: 116
Period size: 38 Copynumber: 2.7 Consensus size: 38
44169248 GGCTTAAAGA
* * ** * *
44169258 CCCGCAGGCTTCATCCTGGTAAAATATCTAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
*
44169296 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
* * *
44169334 CCCACAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
44169361 TCGGGCCTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
Found at i:44169482 original size:43 final size:43
Alignment explanation
Indices: 44169358--44169469 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
44169348 GCTGGTATTA
* *
44169358 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
44169401 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
44169444 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
44169470 GTAATGCCGG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:44171690 original size:45 final size:45
Alignment explanation
Indices: 44171494--44171751 Score: 264
Period size: 45 Copynumber: 5.9 Consensus size: 45
44171484 ATATCATACA
* * ** * *
44171494 ATGCCAACGTCCCAGACGTGGTCTTACATG-CTA-TCTTATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* *
44171537 ATGCCACTGTCCCAGACAG-GGTCTTACAC-AAATCA-A-ATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAAACACATATATCG
* * * * *
44171578 ATGCCGATGTCCCAGACATGGTCTTACTCGTAACCACATAT-T-G
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
** *
44171621 ATGCCAACATCCCAGATGTGGTCTTACACGAAAACACATATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* *
44171666 ATGTCAATTTCCCAGACGTGGTCTTACACGAAAACACATATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
* *
44171711 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATAT
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATAT
44171752 CAGAACCCTA
Statistics
Matches: 175, Mismatches: 30, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
41 26 0.15
42 7 0.04
43 59 0.34
44 4 0.02
45 79 0.45
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATATCG
Found at i:44176137 original size:137 final size:137
Alignment explanation
Indices: 44175891--44176177 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
44175881 CATTGGGCCT
** *
44175891 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
*
44175956 AGCCCCTTATTCAGATAGCAGTATAGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATAGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
44176021 CATATGC
131 CATATGC
44176028 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
*
44176093 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATAGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
44176158 CATATGC
131 CATATGC
44176165 AAGCCCATTTGGG
1 AAGCCCATTTGGG
44176178 GAGACTACTC
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
AGCCCCTTATTCAGATAACAGTATAGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:44177226 original size:44 final size:44
Alignment explanation
Indices: 44177163--44177246 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
44177153 AAATTTTCAT
44177163 AATTTTTGGTTTAGCCAATCAATACCAGATTTTTCTCAAATGAA
1 AATTTTTGGTTTAGCCAATCAATACCAGATTTTTCTCAAATGAA
44177207 AATTTTTGGTTTAGCCAATCAATACCAGATTTTTCTCAAA
1 AATTTTTGGTTTAGCCAATCAATACCAGATTTTTCTCAAA
44177247 GTTTCCCATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (44 bp):
AATTTTTGGTTTAGCCAATCAATACCAGATTTTTCTCAAATGAA
Found at i:44178046 original size:26 final size:26
Alignment explanation
Indices: 44178010--44178093 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
44178000 CATGAAATTC
44178010 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
44178036 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
44178062 TTATCACGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
44178088 TTATCA
1 TTATCA
44178094 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:44182209 original size:39 final size:39
Alignment explanation
Indices: 44182150--44182230 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
44182140 AAACATATAT
* *
44182150 TAATGATGTTCAAACTATGACATAATTAAAGACTCATAC
1 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
44182189 TAATGATGTTCAAA-TCATGACATAATTAAAGACACAAAC
1 TAATGATGTTCAAACT-ATGACATAATTAAAGACACAAAC
44182228 TAA
1 TAA
44182231 AATAACTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (39 bp):
TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
Found at i:44187279 original size:17 final size:16
Alignment explanation
Indices: 44187220--44187279 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
44187210 GAGACAGCCA
* *
44187220 CCATACATGCACTTAAT
1 CCATTCATGCA-TTTAT
44187237 CCATTCATGCATTCTAT
1 CCATTCATGCATT-TAT
*
44187254 -CATCCCATGCATTTGAT
1 CCAT-TCATGCATTT-AT
44187271 CCATTCATG
1 CCATTCATG
44187280 GACTAGCCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 6 0.17
17 26 0.74
18 3 0.09
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (16 bp):
CCATTCATGCATTTAT
Found at i:44187760 original size:30 final size:30
Alignment explanation
Indices: 44187675--44187771 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
44187665 AAACTAAAAA
* *
44187675 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
44187705 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
44187735 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
44187764 ATGAGCTA
1 -TGAGCTA
44187772 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:44188019 original size:22 final size:22
Alignment explanation
Indices: 44187984--44188053 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
44187974 TTATGTACTA
* *
44187984 TTAAACAGAGAGCACTAAAGTG
1 TTAAACAGATAGCACTAATGTG
*
44188006 TTATACAGATAGCAC-AGATGTG
1 TTAAACAGATAGCACTA-ATGTG
* *
44188028 CTAAACGGATAGCACTAATGTG
1 TTAAACAGATAGCACTAATGTG
44188050 TTAA
1 TTAA
44188054 CAATCAAAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 37 0.95
23 1 0.03
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.24
Consensus pattern (22 bp):
TTAAACAGATAGCACTAATGTG
Found at i:44188964 original size:21 final size:21
Alignment explanation
Indices: 44188938--44188989 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
44188928 GACACATAAA
44188938 TGCCTGAAATGACACACGAGG
1 TGCCTGAAATGACACACGAGG
* *
44188959 TGCCTGATACGACACACGAGG
1 TGCCTGAAATGACACACGAGG
44188980 TGCCTGAAAT
1 TGCCTGAAAT
44188990 ATGACACATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (21 bp):
TGCCTGAAATGACACACGAGG
Found at i:44189012 original size:21 final size:21
Alignment explanation
Indices: 44188928--44189026 Score: 83
Period size: 21 Copynumber: 4.6 Consensus size: 21
44188918 ATCAGTATAC
*
44188928 GACACATAAA-TGCCTGAAAT
1 GACACATAAAGTGCCTGATAT
** * *
44188948 GACACACGAGGTGCCTGATAC
1 GACACATAAAGTGCCTGATAT
** *
44188969 GACACACGAGGTGCCTGAAATAT
1 GACACATAAAGTGCCTG--ATAT
44188992 GACACATAAAGTGCCTGATAT
1 GACACATAAAGTGCCTGATAT
44189013 ACGACACATAAAGT
1 --GACACATAAAGT
44189027 TTCTAATCGG
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
20 7 0.11
21 29 0.45
23 29 0.45
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (21 bp):
GACACATAAAGTGCCTGATAT
Found at i:44189021 original size:23 final size:22
Alignment explanation
Indices: 44188924--44189026 Score: 95
Period size: 23 Copynumber: 4.7 Consensus size: 22
44188914 CCTGATCAGT
44188924 ATACGACACATAAA-TGCCTGA
1 ATACGACACATAAAGTGCCTGA
* ** *
44188945 A-ATGACACACGAGGTGCCTG-
1 ATACGACACATAAAGTGCCTGA
** *
44188965 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTG-A
*
44188988 ATATGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
44189010 TATACGACACATAAAGT
1 -ATACGACACATAAAGT
44189027 TTCTAATCGG
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
20 9 0.13
21 25 0.37
22 1 0.01
23 32 0.48
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.18
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:44190470 original size:27 final size:27
Alignment explanation
Indices: 44190440--44190617 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
44190430 ATATTGAGCC
* *
44190440 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
44190467 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
44190494 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * **
44190522 CGCACACTTAGTGCCGCATGATCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
44190549 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
44190576 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
44190603 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44190618 GTACAGTTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:44190579 original size:82 final size:81
Alignment explanation
Indices: 44190466--44190616 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
44190456 TATAATCAAC
* *
44190466 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
44190531 AGTGCCGCATGATCATT
65 AGTGCCGCATGATCATT
* ** *
44190548 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
44190612 AGTGC
65 AGTGC
44190617 TGTACAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGATCATT
Found at i:44198711 original size:27 final size:27
Alignment explanation
Indices: 44198681--44198857 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
44198671 TATTGAGCCT
* *
44198681 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAACTC
* * *
44198708 GCACACTTAGTGCCACGTAATCAAATC
1 GCACACTTAGTGCTACATAATCAACTC
*
44198735 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAATC-AACTC
** * **
44198763 GCACACTTAGTGCCGCATGATCATTTC
1 GCACACTTAGTGCTACATAATCAACTC
* **
44198790 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAATCAACTC
* *
44198817 GCACACTTAGTGCAACATAGTCATA-TC
1 GCACACTTAGTGCTACATAATCA-ACTC
44198844 GCACACTTAGTGCT
1 GCACACTTAGTGCT
44198858 GTACAGTTTA
Statistics
Matches: 125, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAATCAACTC
Found at i:44198819 original size:82 final size:81
Alignment explanation
Indices: 44198706--44198856 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
44198696 TATAATCAAC
* *
44198706 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
44198771 AGTGCCGCATGATCATT
65 AGTGCCGCATGATCATT
* ** *
44198788 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
44198852 AGTGC
65 AGTGC
44198857 TGTACAGTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGATCATT
Found at i:44205534 original size:3 final size:3
Alignment explanation
Indices: 44205526--44205561 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
44205516 GAACAGGGTT
44205526 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
44205562 AAAGCAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:44208390 original size:47 final size:47
Alignment explanation
Indices: 44208336--44208526 Score: 260
Period size: 47 Copynumber: 4.1 Consensus size: 47
44208326 TTAGGATTTT
** * *
44208336 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
44208383 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
44208430 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
44208477 ATGTGATGAACGTGGAAGTAT--ATATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGAATGT-GAA-CATGCATATATGTGATAAGGCCGAATGGCCA
44208524 ATG
1 ATG
44208527 CGAAACGTGT
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
47 125 0.96
48 3 0.02
49 2 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:44208411 original size:25 final size:25
Alignment explanation
Indices: 44208383--44208461 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
44208373 CGAATGGCCA
44208383 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
44208408 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
44208430 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
44208455 ATGTGAT
1 ATGTGAT
44208462 AAGGCAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:44208436 original size:22 final size:22
Alignment explanation
Indices: 44208365--44208436 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
44208355 GTATATATGA
44208365 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
44208387 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
44208412 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
44208434 GAT
1 GAT
44208437 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:44208591 original size:46 final size:46
Alignment explanation
Indices: 44208500--44208595 Score: 122
Period size: 46 Copynumber: 2.1 Consensus size: 46
44208490 GGAAGTATAT
* *
44208500 ATATGTGGTAAAGCCGAATGGCCAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCCAATGCGAAACGTGTAGGAGATGG
* * * *
44208546 ATATGTGGTAAAGCCAAATGGCTAATGTGAGA-GATGTAGGGGATGG
1 ATATGTGGTAAAGCCAAATGGCCAATGCGAAACG-TGTAGGAGATGG
44208592 ATAT
1 ATAT
44208596 ATATATATTG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 1 0.02
46 42 0.98
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.24
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCCAATGCGAAACGTGTAGGAGATGG
Found at i:44220724 original size:48 final size:48
Alignment explanation
Indices: 44220658--44220794 Score: 256
Period size: 48 Copynumber: 2.9 Consensus size: 48
44220648 TATATATGTG
44220658 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
44220706 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
44220754 TGTGGTAAAGCCGAATAGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
44220795 GTGTGTATAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:44220985 original size:37 final size:37
Alignment explanation
Indices: 44220935--44221037 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
44220925 GGAAATATAT
44220935 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
44220972 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
44221009 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
44221038 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:44231767 original size:16 final size:15
Alignment explanation
Indices: 44231746--44231775 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
44231736 CAAAATACTG
44231746 GCTTTTCGGCATTTTA
1 GCTTTTCGGC-TTTTA
44231762 GCTTTTCGGCTTTT
1 GCTTTTCGGCTTTT
44231776 GTCGATCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.20, G:0.20, T:0.53
Consensus pattern (15 bp):
GCTTTTCGGCTTTTA
Found at i:44239149 original size:45 final size:45
Alignment explanation
Indices: 44239093--44239183 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
44239083 GAATTATGTG
*
44239093 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
1 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
* * *
44239138 ATCTGAGCTCATTAAGTTGTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
44239183 A
1 A
44239184 CATGTTTTCG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:44246857 original size:28 final size:28
Alignment explanation
Indices: 44246786--44246859 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
44246776 ATAATAAGCC
* *
44246786 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
44246814 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
44246842 CGCACACTTAATGCTATA
1 CGCACACTTAGTGCTATA
44246860 CAATTTGAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:44251690 original size:39 final size:39
Alignment explanation
Indices: 44251642--44251721 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
44251632 GATTTTTATT
44251642 AACAATATTAATTAATTTACCTATTTGCTTCCCTTTTAA
1 AACAATATTAATTAATTTACCTATTTGCTTCCCTTTTAA
44251681 AACAATATTAATTAATTTACCTATTTGCTTCCCTTTTAA
1 AACAATATTAATTAATTTACCTATTTGCTTCCCTTTTAA
44251720 AA
1 AA
44251722 ATAGAGACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (39 bp):
AACAATATTAATTAATTTACCTATTTGCTTCCCTTTTAA
Found at i:44261419 original size:17 final size:17
Alignment explanation
Indices: 44261383--44261418 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
44261373 TTATACTTTT
44261383 AAATAAAAAATTATGAA
1 AAATAAAAAATTATGAA
44261400 AAAT-AAAAATTATGAA
1 AAATAAAAAATTATGAA
44261416 AAA
1 AAA
44261419 AATCAATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (17 bp):
AAATAAAAAATTATGAA
Found at i:44261494 original size:14 final size:14
Alignment explanation
Indices: 44261475--44261504 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
44261465 CGTACCAATA
44261475 CACCAACTAGTTTC
1 CACCAACTAGTTTC
44261489 CACCAACTAGTTTC
1 CACCAACTAGTTTC
44261503 CA
1 CA
44261505 GTTCGATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.27
Consensus pattern (14 bp):
CACCAACTAGTTTC
Found at i:44261584 original size:20 final size:18
Alignment explanation
Indices: 44261555--44261591 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 18
44261545 TTTTAGATTT
44261555 TTTTTAATTTTTAAAATTA
1 TTTTTAA-TTTTAAAATTA
44261574 TTTTTATATTTTAAAATT
1 TTTTTA-ATTTTAAAATT
44261592 TTAAAGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTAATTTTAAAATTA
Found at i:44262019 original size:22 final size:23
Alignment explanation
Indices: 44261991--44262039 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
44261981 TTGTGGGGTG
44261991 TTTTATGTTGAAATTTTT-AAAA
1 TTTTATGTTGAAATTTTTAAAAA
*
44262013 TTTTATGTTGGAATTTTTAAAAA
1 TTTTATGTTGAAATTTTTAAAAA
44262036 TTTT
1 TTTT
44262040 TTATTCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (23 bp):
TTTTATGTTGAAATTTTTAAAAA
Found at i:44262434 original size:30 final size:30
Alignment explanation
Indices: 44262400--44262459 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
44262390 TTTTAATACA
44262400 AGAGGAATAGAATTTGTCTATTTATAGGCT
1 AGAGGAATAGAATTTGTCTATTTATAGGCT
*
44262430 AGAGGAATAGACTTTGTCTATTTATAGGCT
1 AGAGGAATAGAATTTGTCTATTTATAGGCT
44262460 TTGTAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (30 bp):
AGAGGAATAGAATTTGTCTATTTATAGGCT
Found at i:44278341 original size:194 final size:194
Alignment explanation
Indices: 44278007--44278371 Score: 658
Period size: 194 Copynumber: 1.9 Consensus size: 194
44277997 GGGATCTAGG
*
44278007 CTTTAAAACACACTTTGAAACACTTGATTTCAAGTTTGGGAGATCAAGTTATGACTATTTTAGTG
1 CTTTAAAACACACTTTGAAACACTTGATTTCAAGTTTGGGAGATCAAGTCATGACTATTTTAGTG
*
44278072 AAGACTGCACGAGCAAAATTTATGGAGAGGATTATTATTGAAAATTATGAGTTTTAGGCTTTAAT
66 AAGACTGCACAAGCAAAATTTATGGAGAGGATTATTATTGAAAATTATGAGTTTTAGGCTTTAAT
*
44278137 TTGAGCTTAAATTATTATATATGAGCCTGATTATTGTATATGAGTTTAAATAATTATTTCTTAA
131 TTGAGCTTAAATTATTATATATGAGCCCGATTATTGTATATGAGTTTAAATAATTATTTCTTAA
* * * *
44278201 CTTTGAAACACACTTTGAATCACTTGATTTCAAGTTTGGGAGCTCAAGTCATGACTGTTTTAGTG
1 CTTTAAAACACACTTTGAAACACTTGATTTCAAGTTTGGGAGATCAAGTCATGACTATTTTAGTG
44278266 AAGACTGCACAAGCAAAATTTATGGAGAGGATTATTATTGAAAATTATGAGTTTTAGGCTTTAAT
66 AAGACTGCACAAGCAAAATTTATGGAGAGGATTATTATTGAAAATTATGAGTTTTAGGCTTTAAT
*
44278331 TTGAGCTTAAATTATTATATATGATCCCGATTATTGTATAT
131 TTGAGCTTAAATTATTATATATGAGCCCGATTATTGTATAT
44278372 ATAAGGTTTT
Statistics
Matches: 163, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
194 163 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (194 bp):
CTTTAAAACACACTTTGAAACACTTGATTTCAAGTTTGGGAGATCAAGTCATGACTATTTTAGTG
AAGACTGCACAAGCAAAATTTATGGAGAGGATTATTATTGAAAATTATGAGTTTTAGGCTTTAAT
TTGAGCTTAAATTATTATATATGAGCCCGATTATTGTATATGAGTTTAAATAATTATTTCTTAA
Found at i:44282216 original size:40 final size:40
Alignment explanation
Indices: 44282071--44282254 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
44282061 TTGAATGATG
* *
44282071 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
44282110 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44282150 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
44282189 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
44282230 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44282255 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 52 0.42
40 63 0.50
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44282226 original size:79 final size:79
Alignment explanation
Indices: 44282073--44282219 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
44282063 GAATGATGTC
44282073 CGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTGTG
1 CGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTGTG
44282138 CGAGATACTAATTT
66 CGAGATACTAATTT
* * **
44282152 CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCATT
44282213 TGTGCGA
62 TGTGCGA
44282220 ATTACTATAA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
78 10 0.17
79 42 0.70
80 8 0.13
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGATACTAATTT
Done.