Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 138 of 259
Found at i:45107116 original size:39 final size:39
Alignment explanation
Indices: 45107069--45107210 Score: 248
Period size: 39 Copynumber: 3.6 Consensus size: 39
45107059 TGTATGAGAT
*
45107069 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
45107108 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
45107147 TTATATCCGAGCTAAATCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
45107186 TTATATCCGGGCTAAGTCTCGAAGG
1 TTATATCCGGGCTAAGTCCCGAAGG
45107211 TAATTATGTT
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:45111654 original size:25 final size:25
Alignment explanation
Indices: 45111626--45111679 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
45111616 AATTTGATAT
45111626 TTCAGCAGAGAAGGCATTGTTGAGA
1 TTCAGCAGAGAAGGCATTGTTGAGA
*
45111651 TTCAGCAGATAAGGCATTGTTGAGA
1 TTCAGCAGAGAAGGCATTGTTGAGA
45111676 TTCA
1 TTCA
45111680 CAAACTCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (25 bp):
TTCAGCAGAGAAGGCATTGTTGAGA
Found at i:45112299 original size:15 final size:16
Alignment explanation
Indices: 45112265--45112303 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
45112255 CATAAAATTG
45112265 AGATTAATTTATAGGA
1 AGATTAATTTATAGGA
45112281 AGATTAATTTATA-GA
1 AGATTAATTTATAGGA
45112296 AGA-TAATT
1 AGATTAATT
45112304 AAATTATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (16 bp):
AGATTAATTTATAGGA
Found at i:45112770 original size:16 final size:16
Alignment explanation
Indices: 45112731--45112761 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45112721 TTGAATTACT
45112731 AATTACAGCTCTATTC
1 AATTACAGCTCTATTC
45112747 AATTACAGCTCTATT
1 AATTACAGCTCTATT
45112762 TTATTACAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (16 bp):
AATTACAGCTCTATTC
Found at i:45114551 original size:28 final size:28
Alignment explanation
Indices: 45114511--45114573 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
45114501 GTCATTATCA
45114511 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
45114539 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
45114567 ACCCCAT
1 ACCCCAT
45114574 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:45129806 original size:46 final size:46
Alignment explanation
Indices: 45129756--45129928 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
45129746 TGGTTGAGCA
* *
45129756 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
45129802 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACAAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CAA-ACG
* *
45129849 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
45129895 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45129929 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.59
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:45129912 original size:93 final size:93
Alignment explanation
Indices: 45129753--45129923 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
45129743 GGATGGTTGA
* * *
45129753 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45129818 TGAGTCCGAGTTCGTGAGATGTAACAAG
66 TGAGTCCGAGTTCGTGAGATGTAACAAG
* * *
45129846 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45129911 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45129924 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACAAG
Found at i:45130190 original size:19 final size:20
Alignment explanation
Indices: 45130153--45130190 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45130143 ATAAGGTGGT
45130153 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45130173 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45130191 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45133219 original size:42 final size:42
Alignment explanation
Indices: 45133173--45133319 Score: 188
Period size: 42 Copynumber: 3.3 Consensus size: 42
45133163 CATAGTTAAA
45133173 CTATGGTCTTACACATCTTCACATAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACATCTTCACAT-ATCGATGCCATAGCCCAG
* *
45133215 CTATGGTCTTACACATATTCATATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATCTTCACATATCGATGCCATAGCCCAG
45133257 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT--C-T-TCACATATCGATGCCATAGCCCAG
*
45133306 GTATGGTCTTACAC
1 CTATGGTCTTACAC
45133320 GAATCACATA
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
41 2 0.02
42 51 0.55
45 2 0.02
48 1 0.01
49 36 0.39
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
CTATGGTCTTACACATCTTCACATATCGATGCCATAGCCCAG
Found at i:45133299 original size:49 final size:49
Alignment explanation
Indices: 45133226--45133408 Score: 191
Period size: 49 Copynumber: 3.8 Consensus size: 49
45133216 TATGGTCTTA
* *
45133226 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
*
45133276 CACATATCACATATCGATGCCATAGCCCAGGTATGGTCTTACACG-AAT
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
* * * * *
45133324 CACATATCTCACTA---ATACCATATCCCAGATATGGTCTTATACAGT-AG
1 CACATATCACA-TATCGATGCCATAGCCCAGATATGGTCTTACAC-GTAAT
* * *
45133371 CATATATCAC--ACCGATGCCATATCCCAGATATGGTCTT
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTT
45133409 GTACGGAAAT
Statistics
Matches: 116, Mismatches: 11, Indels: 15
0.82 0.08 0.11
Matches are distributed among these distances:
44 1 0.01
46 24 0.21
47 33 0.28
48 13 0.11
49 39 0.34
50 6 0.05
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
Found at i:45133429 original size:93 final size:94
Alignment explanation
Indices: 45133200--45133408 Score: 225
Period size: 95 Copynumber: 2.3 Consensus size: 94
45133190 TTCACATAAT
* * * * * *
45133200 GATGCCATAGCCCAGCTATGGTCTTACAC-ATAT-TCATATAT--C-GATGCCATAGCCCAGCTA
1 GATGCCATAGCCCAGATATGGTCTTACACGA-ATCACATATCTCACTAATACCATAGCCCAGATA
* *
45133260 TGGTCTTACACGTAATCACATATCACATATC
65 TGGTCTTACACGTAAGCACATATCACA-ACC
* *
45133291 GATGCCATAGCCCAGGTATGGTCTTACACGAATCACATATCTCACTAATACCATATCCCAGATAT
1 GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTAATACCATAGCCCAGATAT
* *
45133356 GGTCTTATACAGT-AGCATATATCAC-ACC
66 GGTCTTACAC-GTAAGCACATATCACAACC
*
45133384 GATGCCATATCCCAGATATGGTCTT
1 GATGCCATAGCCCAGATATGGTCTT
45133409 GTACGGAAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
91 30 0.30
92 7 0.07
93 25 0.25
94 1 0.01
95 34 0.34
96 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (94 bp):
GATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTAATACCATAGCCCAGATAT
GGTCTTACACGTAAGCACATATCACAACC
Found at i:45133466 original size:31 final size:31
Alignment explanation
Indices: 45133431--45133548 Score: 157
Period size: 31 Copynumber: 3.8 Consensus size: 31
45133421 CTTGTCACTT
*
45133431 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
45133462 GTAGCCGGTA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
* * * *
45133493 GTTGCCGGAGCTACCATTTTTCACTGTTCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
45133524 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
45133549 TGTCATTTGT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
30 2 0.03
31 71 0.95
32 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:45136792 original size:44 final size:42
Alignment explanation
Indices: 45136720--45136845 Score: 139
Period size: 44 Copynumber: 3.0 Consensus size: 42
45136710 TAGGATCCCG
* * **
45136720 GTATGTGATTTTGTGTAAGACCACGTCTGGGATGTTGGCATC
1 GTATATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
*
45136762 G-ATTTGAGATTTATGTGTAAGACCATGTCTGGGACATTGGCATC
1 GTATAT--GATTT-TGTGTAAGACCATGTCTGGGACATTGGCATC
* *
45136806 GTATATGATTTCT-TGTAAGACCCTGTCTGGGACAGTGGCA
1 GTATATGATTT-TGTGTAAGACCATGTCTGGGACATTGGCA
45136846 CTGATATTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 3 0.04
42 26 0.36
43 11 0.15
44 29 0.40
45 3 0.04
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (42 bp):
GTATATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:45140790 original size:18 final size:18
Alignment explanation
Indices: 45140767--45140821 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
45140757 CTTGGCCCAT
*
45140767 TGCAGTAACAATAAACAG
1 TGCAGTAACAGTAAACAG
*
45140785 TGCAGTAATAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
45140803 TACAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
45140821 T
1 T
45140822 ATGCAAGTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:45141253 original size:27 final size:27
Alignment explanation
Indices: 45141170--45141242 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
45141160 CAACAAATAG
* *
45141170 GGGCAAAATAGTCATTTTACCATATAA
1 GGGCAAAACAGTCATTTTACCACATAA
*
45141197 GGTCAAAACAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
45141224 GGGCAAGACAGTCCTTTTA
1 GGGCAAAACAGTCATTTTA
45141243 TCAATTAAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTACCACATAA
Found at i:45150025 original size:40 final size:40
Alignment explanation
Indices: 45149951--45150165 Score: 328
Period size: 40 Copynumber: 5.4 Consensus size: 40
45149941 AACCCAAGTA
* *
45149951 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
45149990 CCTTCGGGACTTAGCCCGGATACAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45150030 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45150070 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
45150110 CCTTCGGGGCTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45150149 CCTTCGAGACTTAGCCC
1 CCTTCGGGACTTAGCCC
45150166 AGATGTCATC
Statistics
Matches: 162, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 30 0.19
40 131 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:45158551 original size:79 final size:80
Alignment explanation
Indices: 45158435--45158651 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 80
45158425 AACCCAAGTA
* * *
45158435 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
45158498 GTCACTAGCA-AAATG
65 GTCACTAGCACAAATG
45158513 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
45158578 TCACTAGCACAACTG
66 TCACTAGCACAAATG
* * *
45158593 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CAT-CCTTCGGGACTTAGCCTGGAT
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGAT
45158652 GTGATCCGAA
Statistics
Matches: 129, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
78 33 0.26
79 55 0.43
80 41 0.32
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:45158563 original size:40 final size:40
Alignment explanation
Indices: 45158435--45158651 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
45158425 AACCCAAGTA
* * *
45158435 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
45158474 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45158513 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45158553 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45158593 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CAT-
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45158631 CCTTCGGGACTTAGCCTGGAT
1 CCTTCGGGACTTAGCCCGGAT
45158652 GTGATCCGAA
Statistics
Matches: 166, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 20 0.12
39 52 0.31
40 93 0.56
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:45175582 original size:21 final size:21
Alignment explanation
Indices: 45175556--45175617 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
45175546 TGGTATTTGG
45175556 GAATTGGTACGAAATGGTATA
1 GAATTGGTACGAAATGGTATA
* *
45175577 GAATTGGTATGAAATGGTATG
1 GAATTGGTACGAAATGGTATA
* *
45175598 GTATTTGGTACGAATTGGTA
1 G-AATTGGTACGAAATGGTA
45175618 ATGGTTCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 20 0.57
22 15 0.43
ACGTcount: A:0.32, C:0.03, G:0.31, T:0.34
Consensus pattern (21 bp):
GAATTGGTACGAAATGGTATA
Found at i:45181403 original size:43 final size:43
Alignment explanation
Indices: 45181278--45181404 Score: 123
Period size: 43 Copynumber: 2.9 Consensus size: 43
45181268 AGGATTTCCG
* * ** *
45181278 TATTTGATTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGA
1 TATTTGATTACGTGTAAGACCACATCTGGGACATTGGCATCAA
* * *
45181321 T-TTGAGATTTACGTGTAAGACC-CTATCTGGAACAGTGGCATCAA
1 TATT-TGA-TTACGTGTAAGACCAC-ATCTGGGACATTGGCATCAA
* *
45181365 TATTTGATTACATGTAAGACCACATCGGGGACATTGGCAT
1 TATTTGATTACGTGTAAGACCACATCTGGGACATTGGCAT
45181405 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.03
43 31 0.47
44 31 0.47
45 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TATTTGATTACGTGTAAGACCACATCTGGGACATTGGCATCAA
Found at i:45186013 original size:6 final size:6
Alignment explanation
Indices: 45185995--45186119 Score: 98
Period size: 6 Copynumber: 20.3 Consensus size: 6
45185985 AAGAAACATT
* *
45185995 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
45186044 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCA-A
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
*
45186092 TATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 -ATCA-G-A ATCAGA ATCAGA ATCAGA AT
45186120 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 10, Indels: 26
0.73 0.08 0.20
Matches are distributed among these distances:
5 7 0.07
6 77 0.80
7 8 0.08
8 3 0.03
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:45186046 original size:31 final size:31
Alignment explanation
Indices: 45186009--45186119 Score: 161
Period size: 31 Copynumber: 3.6 Consensus size: 31
45185999 GAACTAGAAT
* * *
45186009 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
* *
45186040 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
45186071 CAGAATCAAAATCAGAATCA-ATATCAGGTAA
1 CAGAATCAAAATCAGAATCAGA-ATCAGGTAA
45186102 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
45186120 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:45186579 original size:27 final size:27
Alignment explanation
Indices: 45186521--45187124 Score: 820
Period size: 27 Copynumber: 22.4 Consensus size: 27
45186511 GGGGCAAAAT
* * * *
45186521 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45186547 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45186574 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45186601 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45186628 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
45186655 AATAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45186681 TAGTAATTCTACCCTACAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
45186709 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45186736 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
45186763 GATAATTCTACCCCATAGGTGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45186790 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
45186817 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45186844 GATAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45186871 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
45186898 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45186924 TGGTAATTCTACCCTACAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
45186952 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
45186979 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45187005 TGGTAATTCTACCCTATAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* * * *
45187033 AGTAATTCTACCCTATAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45187060 GATAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45187087 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
45187114 GGTAATTCTAC
1 GGTAATTCTAC
45187125 AAATCAAGGA
Statistics
Matches: 517, Mismatches: 54, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
26 20 0.04
27 490 0.95
28 7 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45189159 original size:6 final size:6
Alignment explanation
Indices: 45189141--45189234 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
45189131 AAGAAACATT
* *
45189141 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
45189190 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
45189235 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 58 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:45189192 original size:31 final size:31
Alignment explanation
Indices: 45189155--45189234 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
45189145 GAACTAGAAT
* * *
45189155 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
*
45189186 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
45189217 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
45189235 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:45189693 original size:27 final size:27
Alignment explanation
Indices: 45189636--45190019 Score: 531
Period size: 27 Copynumber: 14.3 Consensus size: 27
45189626 GAGGCAAAAT
* * * *
45189636 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45189662 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45189689 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45189716 GGT-ATCTCTACCCTACAAGGGTATGTC
1 GGTAAT-TCTACCCTACAGGGGTATTTC
45189743 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
45189770 AATAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45189796 AAGTAATTCTACCCTACAGGGGTATTTT
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
45189824 TGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45189851 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45189878 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45189905 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45189932 GGTAATTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45189959 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45189986 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45190013 GGTAATT
1 GGTAATT
45190020 TATTTCAGTA
Statistics
Matches: 321, Mismatches: 32, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
26 19 0.06
27 298 0.93
28 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45190058 original size:27 final size:27
Alignment explanation
Indices: 45190020--45190329 Score: 467
Period size: 27 Copynumber: 11.5 Consensus size: 27
45190010 TTCGGTAATT
*
45190020 TATTTCAGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190047 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190074 TATTGCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190101 TATTTCAGTAATTCTACCCTACCGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190128 TATTCCGGTAATTCTACCCTATAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190155 TATTTCGGTAAATCTACCCTATAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190182 TATTGCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190209 TATTTCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190236 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190263 TATTTCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190290 TATTGCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
45190317 TATTTCGGTAATT
1 TATTTCGGTAATT
45190330 TATTTCTGTA
Statistics
Matches: 257, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 257 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
TATTTCGGTAATTCTACCCTACAGGGG
Found at i:45190068 original size:67 final size:67
Alignment explanation
Indices: 45189960--45190086 Score: 218
Period size: 67 Copynumber: 1.9 Consensus size: 67
45189950 GGGTATTCCG
* * *
45189960 GTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTATTT
1 GTAATTCTACCCTACAGGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAATTTATTT
45190025 CA
66 CA
*
45190027 GTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATT
1 GTAATTCTACCCTACAGGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAATT
45190087 CTACCCTACA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (67 bp):
GTAATTCTACCCTACAGGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAATTTATTT
CA
Found at i:45190284 original size:310 final size:310
Alignment explanation
Indices: 45189722--45190898 Score: 1771
Period size: 310 Copynumber: 3.8 Consensus size: 310
45189712 TTTCGGTATC
* * *
45189722 TCTACCCTACAAGGGTATGT-CGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAC
1 TCTACCCTACAGGGGTAT-TCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTAC
***
45189786 AGGGGTA-TTCAAGTAATTCTACCCTACAGGGGTATTTTTGTAATTCTACCCTATAGGGGTATTT
65 AGGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTT
* * * *
45189850 CGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
129 CGGTAAATCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTA
*
45189915 CCCTACAGGGGTATTCCGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGG
194 CCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGG
45189980 TATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTATTTCAGTAAT
259 TATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTATTTCAGTAAT
45190032 TCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA
1 TCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA
*
45190097 GGGGTATTTCAGTAATTCTACCCTACCGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCG
66 GGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCG
*
45190162 GTAAATCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
131 GTAAATCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACC
* *
45190227 CTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTA
196 CTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTA
*
45190292 TTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTATTTCTGTAAT
261 TTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTATTTCAGTAAT
45190342 TCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA
1 TCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA
*
45190407 GGGGTATTTCAGTAATTCTACCCTACCGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCG
66 GGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCG
*
45190472 GTAAATCTACCCTATAGGGGTATTGCGATAATTCTATCCTACAGGGGTATTGCGATAATTCTACC
131 GTAAATCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACC
* *
45190537 CTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTA
196 CTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTA
* * * * * *
45190602 TTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGT-AT
261 TTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATT-TA--TTTCA---GTAAT
** ** * * * * *
45190657 T-T-CGGTA-A--TTTATTTCAGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACA
1 TCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA
* * * ** *
45190717 GGGGTATTGC-GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACCGGGGTATTCC
66 GGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTC
* * * * *
45190781 GGTAATTCTACCCTATAGGGGTATTTCGGTAAATCTACCCTATAGGGGTATTGCGATAATTCTAC
130 GGTAAATCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
* *
45190846 CCTACA-GGGTATTTCGATAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
195 CCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTAC
45190899 AAATCGAGGA
Statistics
Matches: 807, Mismatches: 51, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
309 47 0.06
310 743 0.92
311 5 0.01
312 1 0.00
313 5 0.01
314 1 0.00
315 3 0.00
316 2 0.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (310 bp):
TCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA
GGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCG
GTAAATCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACC
CTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTA
TTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTATTTCAGTAAT
Found at i:45190368 original size:27 final size:27
Alignment explanation
Indices: 45190330--45190666 Score: 503
Period size: 27 Copynumber: 12.5 Consensus size: 27
45190320 TTCGGTAATT
*
45190330 TATTTCTGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190357 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190384 TATTGCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190411 TATTTCAGTAATTCTACCCTACCGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190438 TATTCCGGTAATTCTACCCTATAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190465 TATTTCGGTAAATCTACCCTATAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* * *
45190492 TATTGCGATAATTCTATCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190519 TATTGCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190546 TATTTCGGTAATTCTACCCTATAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
*
45190573 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
45190600 TATTTCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
* *
45190627 TATTGCGATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGG
45190654 TATTTCGGTAATT
1 TATTTCGGTAATT
45190667 TATTTCAGTA
Statistics
Matches: 280, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 280 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
TATTTCGGTAATTCTACCCTACAGGGG
Found at i:45190371 original size:67 final size:67
Alignment explanation
Indices: 45190263--45190396 Score: 216
Period size: 67 Copynumber: 2.0 Consensus size: 67
45190253 CCTACAGGGG
* * *
45190263 TATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAA
1 TATTTCGATAATTCTACCCTACAGGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAA
45190328 TT
66 TT
*
45190330 TATTTCTG-TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATA
1 TATTTC-GATAATTCTACCCTACAGGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATA
45190394 ATT
65 ATT
45190397 CTACCCTACA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
67 61 0.98
68 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (67 bp):
TATTTCGATAATTCTACCCTACAGGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAA
TT
Found at i:45190508 original size:22 final size:24
Alignment explanation
Indices: 45190338--45190898 Score: 185
Period size: 27 Copynumber: 21.4 Consensus size: 24
45190328 TTTATTTCTG
* *
45190338 TAATTCTACCCTACAGGGGTATTCCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
45190365 TAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
*
45190392 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTA--CTA-AGGGGTATTGCGA
* * *
45190418 GTAATTCTACCCTACCGGGGTATTCCGG
1 -TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190446 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
*
45190473 TAAATCTACCCTATAGGGGTATTGCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
45190500 TAATTCTATCCTACAGGGGTATTGCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190527 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190554 TAATTCTACCCTATAGGGGTATTCCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190581 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
45190608 TAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190635 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190662 TAATT-TATTTCA---GTAATT-C--
1 TAATTCTA-CTAAGGGGT-ATTGCGA
** * *
45190681 T-ACCCTAC-AA-GGGTATTCCGG
1 TAATTCTACTAAGGGGTATTGCGA
45190702 TAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
*
45190729 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTA--CTA-AGGGGTATTGCGA
* * *
45190755 GTAATTCTACCCTACCGGGGTATTCCGG
1 -TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190783 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
*
45190810 TAAATCTACCCTATAGGGGTATTGCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
*
45190837 TAATTCTACCCTACA-GGGTATTTCGA
1 TAATTCTA--CTA-AGGGGTATTGCGA
* *
45190863 TAATTCTACCCTACAGGGGTATTCCGG
1 TAATTCTA--CTA-AGGGGTATTGCGA
45190890 TAATTCTAC
1 TAATTCTAC
45190899 AAATCGAGGA
Statistics
Matches: 464, Mismatches: 52, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
17 1 0.00
18 4 0.01
19 6 0.01
21 4 0.01
22 7 0.02
24 2 0.00
25 3 0.01
26 30 0.06
27 407 0.88
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (24 bp):
TAATTCTACTAAGGGGTATTGCGA
Found at i:45190705 original size:27 final size:27
Alignment explanation
Indices: 45190674--45190898 Score: 317
Period size: 27 Copynumber: 8.4 Consensus size: 27
45190664 ATTTATTTCA
*
45190674 GTAATTCTACCCTACAAGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTCCG
*
45190701 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTCCG
* * *
45190728 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTCCG
*
45190755 GTAATTCTACCCTACCGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTCCG
* *
45190782 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTCCG
* * *
45190809 GTAAATCTACCCTATAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTCCG
* *
45190836 ATAATTCTACCCTACA-GGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTCCG
*
45190862 ATAATTCTACCCTACAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTCCG
45190889 GTAATTCTAC
1 GTAATTCTAC
45190899 AAATCGAGGA
Statistics
Matches: 177, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 25 0.14
27 152 0.86
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTCCG
Found at i:45190708 original size:67 final size:67
Alignment explanation
Indices: 45190600--45190733 Score: 214
Period size: 67 Copynumber: 2.0 Consensus size: 67
45190590 CCTACAGGGG
* * * * *
45190600 TATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAA
1 TATTTCAGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAA
45190665 TT
66 TT
*
45190667 TATTTCAGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTGCGATAA
1 TATTTCAGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAA
45190732 TT
66 TT
45190734 CTACCCTACA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (67 bp):
TATTTCAGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACCCTACAGGGGTATTGCGATAA
TT
Found at i:45190948 original size:107 final size:108
Alignment explanation
Indices: 45190716--45190919 Score: 288
Period size: 107 Copynumber: 1.9 Consensus size: 108
45190706 TCTACCCTAC
*
45190716 AGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACCGGGGTATTCC
1 AGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCC
** ** **
45190781 GGTAATTCTACCCTATAGGGGTATTTCGGTAAATCTACCCTAT
66 GGTAATTCTACCAAATAGGGAAATTTCGGTAAATCTACCAAAT
45190824 AGGGGTATTGCGATAATTCTACCCTACA-GGGTATTTC-GATAATTCTACCCTACAGGGGTATTC
1 AGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTC
* *
45190887 CGGTAATTCTA-CAAATCGAGGAAATTTGGGTAA
65 CGGTAATTCTACCAAATAG-GGAAATTTCGGTAA
45190920 TTTTATAAAT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
106 5 0.06
107 54 0.62
108 28 0.32
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (108 bp):
AGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCC
GGTAATTCTACCAAATAGGGAAATTTCGGTAAATCTACCAAAT
Found at i:45190973 original size:27 final size:27
Alignment explanation
Indices: 45190879--45190976 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
45190869 TACCCTACAG
* *
45190879 GGGTATTCCGGTAATTCTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** * * *
45190906 GGAAATTTGGGTAATTTTATAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
*
45190933 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTACAAATCGA
*
45190960 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
45190977 GGTAAACTAA
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:45192242 original size:24 final size:24
Alignment explanation
Indices: 45192215--45192269 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
45192205 AATGCTATGT
*
45192215 GGAGGAAATCAAGAAGAGGATTGG
1 GGAGAAAATCAAGAAGAGGATTGG
*
45192239 GGAGAAAATCAAGGAGAGGATTATGG
1 GGAGAAAATCAAGAAGAGGA-T-TGG
45192265 GGAGA
1 GGAGA
45192270 TTTTAGGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 18 0.67
25 1 0.04
26 8 0.30
ACGTcount: A:0.42, C:0.04, G:0.42, T:0.13
Consensus pattern (24 bp):
GGAGAAAATCAAGAAGAGGATTGG
Found at i:45197001 original size:24 final size:24
Alignment explanation
Indices: 45196974--45197022 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
45196964 AGCACCAGTT
45196974 TTGTTCGTGAAAAAGAAAGATGGG
1 TTGTTCGTGAAAAAGAAAGATGGG
* *
45196998 TTGTTCGTGAAGAAGAAGGATGGG
1 TTGTTCGTGAAAAAGAAAGATGGG
45197022 T
1 T
45197023 CTATGTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.37, T:0.27
Consensus pattern (24 bp):
TTGTTCGTGAAAAAGAAAGATGGG
Found at i:45201321 original size:24 final size:24
Alignment explanation
Indices: 45201258--45201321 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
45201248 TCTTTTTCAA
45201258 TTTTCTTTTT-CTTCTCACATTCT
1 TTTTCTTTTTCCTTCTCACATTCT
** * * *
45201281 TTTTCACTCTCCATCTC-GATCTCT
1 TTTTCTTTTTCCTTCTCACAT-TCT
45201305 TTTTCTTTTTCCTTCTC
1 TTTTCTTTTTCCTTCTC
45201322 TTTTTCCGTT
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
23 9 0.30
24 21 0.70
ACGTcount: A:0.08, C:0.31, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTCTTTTTCCTTCTCACATTCT
Found at i:45201323 original size:18 final size:19
Alignment explanation
Indices: 45201300--45201388 Score: 94
Period size: 18 Copynumber: 4.7 Consensus size: 19
45201290 TCCATCTCGA
45201300 TCTCTTTTTCTTTTTC-CT
1 TCTCTTTTTCTTTTTCACT
**
45201318 TCTCTTTTTCCGTTTCACT
1 TCTCTTTTTCTTTTTCACT
*
45201337 T-TCTTTTTCTTTTTCAAT
1 TCTCTTTTTCTTTTTCACT
*
45201355 T-TCATTTTTCTTTTTCTCAT
1 TCTC-TTTTTCTTTTTCAC-T
45201375 TCTCTTTTTGCTTT
1 TCTCTTTTT-CTTT
45201389 CTTTCACACT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
18 31 0.53
19 15 0.25
20 7 0.12
21 6 0.10
ACGTcount: A:0.06, C:0.24, G:0.02, T:0.69
Consensus pattern (19 bp):
TCTCTTTTTCTTTTTCACT
Found at i:45201357 original size:24 final size:25
Alignment explanation
Indices: 45201320--45201371 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
45201310 TTTTTCCTTC
**
45201320 TCTTTTTCCGTTTCA-CTTTCTTTT
1 TCTTTTTCAATTTCATCTTTCTTTT
*
45201344 TCTTTTTCAATTTCATTTTTCTTTT
1 TCTTTTTCAATTTCATCTTTCTTTT
45201369 TCT
1 TCT
45201372 CATTCTCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.08, C:0.21, G:0.02, T:0.69
Consensus pattern (25 bp):
TCTTTTTCAATTTCATCTTTCTTTT
Found at i:45201368 original size:5 final size:6
Alignment explanation
Indices: 45201302--45201371 Score: 59
Period size: 6 Copynumber: 11.5 Consensus size: 6
45201292 CATCTCGATC
* * ** **
45201302 TCTTTT TCTTTT TCCTTC TCTTTT TCCGTT TCACTT TCTTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
**
45201350 TCAATT TCATTTT TCTTTT TCT
1 TCTTTT TC-TTTT TCTTTT TCT
45201372 CATTCTCTTT
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
6 45 0.92
7 4 0.08
ACGTcount: A:0.06, C:0.23, G:0.01, T:0.70
Consensus pattern (6 bp):
TCTTTT
Found at i:45203865 original size:10 final size:10
Alignment explanation
Indices: 45203850--45203886 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
45203840 GCTAGAAGGA
45203850 AGCTCAAACG
1 AGCTCAAACG
45203860 AGCTCAAACG
1 AGCTCAAACG
*
45203870 AGCTCAAACA
1 AGCTCAAACG
45203880 AGCTCAA
1 AGCTCAA
45203887 GTGAGCTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.43, C:0.30, G:0.16, T:0.11
Consensus pattern (10 bp):
AGCTCAAACG
Found at i:45207489 original size:26 final size:26
Alignment explanation
Indices: 45207442--45207494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
45207432 GTTGCATTAC
*
45207442 TATTACTGGCAGCTCTGCTGCGATAT
1 TATTACTGGCAGCTCTACTGCGATAT
* *
45207468 TATTACTGGCAGCTTTATTGCGATAT
1 TATTACTGGCAGCTCTACTGCGATAT
45207494 T
1 T
45207495 GGTGTGTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (26 bp):
TATTACTGGCAGCTCTACTGCGATAT
Found at i:45211445 original size:15 final size:15
Alignment explanation
Indices: 45211413--45211441 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45211403 ATTTTCTATG
45211413 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
45211428 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
45211442 ATTTTCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:45215073 original size:27 final size:27
Alignment explanation
Indices: 45215043--45215219 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
45215033 AAATTGTACA
* *
45215043 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
45215070 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
45215097 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
45215124 GCGCTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
45215152 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
45215179 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
45215206 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
45215220 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 100 0.83
28 21 0.17
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:45215156 original size:82 final size:81
Alignment explanation
Indices: 45215046--45215198 Score: 209
Period size: 82 Copynumber: 1.9 Consensus size: 81
45215036 TTGTACAGCA
* * * *
45215046 CTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGC
1 CTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTGTGC
45215110 GAATTGACCATGCGGCG
65 GAATTGACCATGCGGCG
** *
45215127 CTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGC
1 CTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGTGC
*
45215192 GAGTTGA
65 GAATTGA
45215199 TTATATAGCA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 12 0.19
82 50 0.81
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
CTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGTGCG
AATTGACCATGCGGCG
Found at i:45219597 original size:20 final size:21
Alignment explanation
Indices: 45219572--45219610 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
45219562 TCGAATGTAC
45219572 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
45219592 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
45219611 TGATTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:45219931 original size:43 final size:43
Alignment explanation
Indices: 45219782--45219934 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
45219772 ATATCGTACA
* *
45219782 ATGCCAACGTCCTAGACGTGGTCTTACATGCT-ATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATATCG
* *
45219825 ATGCC-ACTATCCCAGACAG-GGTCTTACACG-AATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * * * *
45219866 ATGTCGATGTCCCAGACATGGTCTTACACGTAATCACATCTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
45219909 ATGCCAACGTCCCAGATGTGGTCTTA
1 ATGCCAACGTCCCAGACGTGGTCTTA
45219935 TAGGAGAACA
Statistics
Matches: 88, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
41 24 0.27
42 19 0.22
43 44 0.50
44 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:45223857 original size:13 final size:13
Alignment explanation
Indices: 45223841--45223867 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45223831 ATCATATGAC
45223841 TATATCATCATCA
1 TATATCATCATCA
45223854 TATATCATCATCA
1 TATATCATCATCA
45223867 T
1 T
45223868 TATGTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (13 bp):
TATATCATCATCA
Found at i:45225545 original size:27 final size:27
Alignment explanation
Indices: 45225515--45225566 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
45225505 AAAGTACTCC
*
45225515 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
*
45225542 CGATTTACAGAATTACCGTTTTACC
1 CGATTTACAAAATTACCGTTTTACC
45225567 ATTGATTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (27 bp):
CGATTTACAAAATTACCGTTTTACCCT
Found at i:45225573 original size:27 final size:27
Alignment explanation
Indices: 45225515--45225573 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
45225505 AAAGTACTCC
* *
45225515 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCAT
*
45225542 CGATTTACAGAATTACCGTTTTACCAT
1 CGATTTACAAAATTACCGTTTTACCAT
*
45225569 TGATT
1 CGATT
45225574 GTGAAATTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAAAATTACCGTTTTACCAT
Found at i:45225613 original size:27 final size:27
Alignment explanation
Indices: 45225578--45225771 Score: 205
Period size: 27 Copynumber: 7.2 Consensus size: 27
45225568 TTGATTGTGA
45225578 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
45225605 AATTTCTGAAA-ACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
45225631 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
45225658 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
45225685 AATTATCT-AAATACTCTTGTAGGGTAG
1 AATTA-CTGAAATACCCCTGTAGGGTAG
* *
45225712 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
45225739 AATTA-TCGAGATACCCTTGTGGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
45225766 AATTAC
1 AATTAC
45225772 CATTTTGCCC
Statistics
Matches: 137, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
26 24 0.18
27 112 0.82
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:45226009 original size:27 final size:26
Alignment explanation
Indices: 45225971--45226053 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
45225961 CGAAGGAAGC
45225971 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
45225998 GTTCTGGTGGCTCTGGCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
45226024 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
45226051 GTT
1 GTT
45226054 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:45226395 original size:27 final size:25
Alignment explanation
Indices: 45226365--45226437 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 25
45226355 AGGTGGGTTC
*
45226365 GCCACATTATCTGATTCTGGTGGCTCT
1 GCCACA-TATCTG-TTCTGGTGACTCT
45226392 GCCACAATATCTGTATCTGGTGACTCT
1 GCCAC-ATATCTGT-TCTGGTGACTCT
*
45226419 GTCACGATATCTGTTCTGG
1 GCCAC-ATATCTGTTCTGG
45226438 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.15
27 34 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.36
Consensus pattern (25 bp):
GCCACATATCTGTTCTGGTGACTCT
Found at i:45226564 original size:6 final size:6
Alignment explanation
Indices: 45226555--45226740 Score: 136
Period size: 6 Copynumber: 30.8 Consensus size: 6
45226545 TTGCATTCAC
* *
45226555 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
45226604 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * * *
45226652 GTTCTG -TCACCTA ATTCTG ATTCTG ATTCTA ATT-TG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
* *
45226700 ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG ATTCTA ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45226741 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
4 2 0.01
5 10 0.07
6 118 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45226619 original size:30 final size:30
Alignment explanation
Indices: 45226555--45226740 Score: 206
Period size: 30 Copynumber: 6.4 Consensus size: 30
45226545 TTGCATTCAC
* *
45226555 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
45226586 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
45226616 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* * *
45226640 ATTCTGATTCTGGTTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
* *
45226671 ATTCTGATTCTAATT-TGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* * *
45226700 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
45226730 ATTCTAATTCT
1 ATTCTGATTCT
45226741 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 14, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
24 22 0.17
26 1 0.01
29 22 0.17
30 50 0.38
31 38 0.29
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:45226746 original size:30 final size:30
Alignment explanation
Indices: 45226555--45226761 Score: 198
Period size: 30 Copynumber: 7.1 Consensus size: 30
45226545 TTGCATTCAC
* *
45226555 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTTTGTTAC-TAATTCTG
* *
45226586 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
*
45226616 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
* * *
45226640 ATTCTGATTCTGGTTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTTTGTTA-CTAATTCTG
*
45226671 ATTCTGATTCT-AATTTGTTACTAATAT-TG
1 ATTCTGATTCTGATTTTGTTACTAAT-TCTG
*
45226700 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
* * *
45226730 ATTCTAATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTTT-GTTACTAATTCTG
45226760 AT
1 AT
45226762 AATGTTTCTT
Statistics
Matches: 151, Mismatches: 14, Indels: 23
0.80 0.07 0.12
Matches are distributed among these distances:
24 20 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 21 0.14
30 69 0.46
31 38 0.25
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTGTTACTAATTCTG
Found at i:45228847 original size:27 final size:27
Alignment explanation
Indices: 45228749--45229309 Score: 492
Period size: 27 Copynumber: 22.2 Consensus size: 27
45228739 AAAGTACTCC
45228749 CGATTTACA-AATTACCG-TTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
45228773 CGATTTACAGAATTACCG-TTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45228798 CGATTTA-A-AATTATC-ATTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45228822 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45228849 C-AGTTTATAGAATTACCGTTTTA-CCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45228875 CGATTTA-AGAATTATCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45228900 -TATTTA-A-AATTA-C-TATTTACCCT
1 CGATTTACAGAATTACCGT-TTTACCCT
*
45228923 CGATTTACAGAATTATCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45228949 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45228976 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45229003 C-AGTTTATAGAATTA-C-TTTTA-CCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
45229027 CGATTTATATAATTATCG-TTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45229052 CGATTGT--A-AATTATCG-TTTACCCT
1 CGATT-TACAGAATTACCGTTTTACCCT
*
45229076 CGATTTACAGAATTACTG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45229102 AG-TTTACAGAATTACTG-TTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
45229126 CGATTTACAGAATT-CCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45229152 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45229179 CGATTTAC--AA--A-----TTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
45229197 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45229224 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45229251 C-AGTTTAGAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45229278 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45229305 TGATT
1 CGATT
45229310 GTGAAATTAC
Statistics
Matches: 456, Mismatches: 37, Indels: 85
0.79 0.06 0.15
Matches are distributed among these distances:
18 13 0.03
20 2 0.00
21 1 0.00
22 6 0.01
23 32 0.07
24 61 0.13
25 99 0.22
26 75 0.16
27 163 0.36
28 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:45228937 original size:127 final size:129
Alignment explanation
Indices: 45228752--45229293 Score: 510
Period size: 127 Copynumber: 4.3 Consensus size: 129
45228742 GTACTCCCGA
* *
45228752 TTTACA-AATTACCG-TTTACCTCGATTTACAGAATTAC-CGTTTACCTCGATTTAAAATTATCA
1 TTTACAGAATTATCGTTTTACCTC-ATTTACAGAATTACTCATTTACCTCGATTTAAAATTATCA
* *
45228814 TTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAG-TTTATAGAATTACCGTTTTA-CCTC-
65 TTTACCCTCGATTTACAAAATTACCGTTTTACCCT-AGATTTACAGAATTACTGTTTTACCCTCA
45228876 G
129 G
*
45228877 ATTTA-AGAATTATCGTTTTACCTTATTTA-A-AATTACT-ATTTACCCTCGATTTACAGAATTA
1 -TTTACAGAATTATCGTTTTACCTCATTTACAGAATTACTCATTTA-CCTCGATTTA-A-AATTA
* * * *
45228938 TCGTTTTA-CCTC-AGTTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACC
62 TC-ATTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACC
45229001 CTCAG
125 CTCAG
* * * *
45229006 TTTATAGAATTA-C-TTTTACCTCGATTTATATAATTA-TCGTTTACCTCGATTGT-AAATTATC
1 TTTACAGAATTATCGTTTTACCTC-ATTTACAGAATTACTCATTTACCTCGATT-TAAAATTATC
* * *
45229067 GTTTACCCTCGATTTACAGAATTACTG-TTTACCCTAG-TTTACAGAATTACTG-TTTA-CCTC-
64 ATTTACCCTCGATTTACAAAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCTCA
45229127 G
129 G
* ** *
45229128 ATTTACAGAATT-CCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTT-ACA--A
1 -TTTACAGAATTATCGTTTTA-CCTCA-TTTACAGAATTACTCATTTA-CCTCGATTTAAAATTA
** * *
45229189 --A-TTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCT
62 TCATTTACCCTCGATTTACAAAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCT
45229251 CAG
127 CAG
* *
45229254 TTTAGAAAATTATCGTTTTACCCTCGATTTACAGAATTAC
1 TTTACAGAATTATCGTTTTA-CCTC-ATTTACAGAATTAC
45229294 CGTTTTACCC
Statistics
Matches: 355, Mismatches: 28, Indels: 66
0.79 0.06 0.15
Matches are distributed among these distances:
121 21 0.06
122 10 0.03
123 30 0.08
124 25 0.07
125 54 0.15
126 66 0.19
127 101 0.28
128 20 0.06
129 18 0.05
130 10 0.03
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (129 bp):
TTTACAGAATTATCGTTTTACCTCATTTACAGAATTACTCATTTACCTCGATTTAAAATTATCAT
TTACCCTCGATTTACAAAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCTCAG
Found at i:45229196 original size:45 final size:46
Alignment explanation
Indices: 45229145--45229239 Score: 124
Period size: 45 Copynumber: 2.1 Consensus size: 46
45229135 GAATTCCGTT
*
45229145 TTACCCTC-AGTT-TACAGAATTACTGTTTTACCCTCGATTTACA-AA
1 TTACCCTCGAGTTGTA-A-AATTACCGTTTTACCCTCGATTTACAGAA
* *
45229190 TTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAA
1 TTACCCTCGAGTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
45229236 TTAC
1 TTAC
45229240 TGGTTTACCC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
45 32 0.73
46 10 0.23
47 2 0.05
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (46 bp):
TTACCCTCGAGTTGTAAAATTACCGTTTTACCCTCGATTTACAGAA
Found at i:45229386 original size:27 final size:27
Alignment explanation
Indices: 45229314--45229478 Score: 174
Period size: 27 Copynumber: 6.2 Consensus size: 27
45229304 TTGATTGTGA
45229314 AATTACTGAAATACCCC-ATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
45229340 AATTTC-GAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
45229366 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
** *
45229393 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
45229420 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* * * *
45229447 AAATACCGAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
45229474 AATTA
1 AATTA
45229479 TCGAGATACC
Statistics
Matches: 116, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
25 10 0.09
26 18 0.16
27 88 0.76
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:45229419 original size:54 final size:54
Alignment explanation
Indices: 45229314--45229507 Score: 216
Period size: 54 Copynumber: 3.6 Consensus size: 54
45229304 TTGATTGTGA
* * * *
45229314 AATTACTGAAATACCC-CATAGGGTAGAATT-TCGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
45229366 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
45229420 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCTCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
45229474 AATTA-TCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACT-GAAATACCCTTATAGGGTAGAATTACC
45229508 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
52 15 0.12
53 13 0.11
54 94 0.77
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:45229459 original size:81 final size:81
Alignment explanation
Indices: 45229322--45229505 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
45229312 GAAATTACTG
* * *
45229322 AAATACCCC-ATAGGGTAGAATT-TCGAAATACCCCTATAAGGTAGAATTACTAAAATACC-CTT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAATACCTC-T
45229384 ATAGGATAGAATTACCA
65 ATAGGATAGAATTACCA
* * * * *
45229401 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCTCTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAATACCTCTA
* * *
45229466 TAGGGTAGAATTATCG
66 TAGGATAGAATTACCA
* * * *
45229482 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
45229506 CCATTTTGCC
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 9 0.10
80 12 0.14
81 65 0.75
82 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAATACCTCTA
TAGGATAGAATTACCA
Found at i:45229487 original size:27 final size:27
Alignment explanation
Indices: 45229332--45229505 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
45229322 AAATACCCCA
* *
45229332 TAGGGTAGAATT-TCGAAATACCCCTA
1 TAGGGTAGAATTATCGAAATACCCTTG
* * *
45229358 TAAGGTAGAATTA-CTAAAATACCCTTA
1 TAGGGTAGAATTATC-GAAATACCCTTG
* * * *
45229385 TAGGATAGAATTACCAAAATACCCCTG
1 TAGGGTAGAATTATCGAAATACCCTTG
45229412 TAGGGTAGAATTATCGAAATACCCTTG
1 TAGGGTAGAATTATCGAAATACCCTTG
* *
45229439 TAGGGTAGAAATACCGAAATA-CCTCTG
1 TAGGGTAGAATTATCGAAATACCCT-TG
*
45229466 TAGGGTAGAATTATCGAGATACCCTTG
1 TAGGGTAGAATTATCGAAATACCCTTG
* *
45229493 TGGGGTAAAATTA
1 TAGGGTAGAATTA
45229506 CCATTTTGCC
Statistics
Matches: 125, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
26 15 0.12
27 106 0.85
28 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTATCGAAATACCCTTG
Found at i:45229744 original size:27 final size:26
Alignment explanation
Indices: 45229706--45229788 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
45229696 CGAAGGAAGC
45229706 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
45229733 GTTCTGGTGGCTCTGGCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
45229759 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
45229786 GTT
1 GTT
45229789 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:45230129 original size:27 final size:25
Alignment explanation
Indices: 45230097--45230170 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
45230087 TTAGGTGGGT
*
45230097 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
45230124 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
45230151 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
45230171 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:45230297 original size:6 final size:6
Alignment explanation
Indices: 45230288--45230473 Score: 136
Period size: 6 Copynumber: 30.8 Consensus size: 6
45230278 TTGCATTCAC
* *
45230288 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
45230337 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * * * *
45230385 GTTCTG -TCACCTA ATTCTG ATTCTG ATTCTA ATTTTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
45230434 ATTCTG ATTCTG ATT-TG -TTACTG ATTCTG ATTCTA ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45230474 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
4 2 0.01
5 11 0.08
6 117 0.82
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45230428 original size:85 final size:84
Alignment explanation
Indices: 45230288--45230473 Score: 309
Period size: 85 Copynumber: 2.2 Consensus size: 84
45230278 TTGCATTCAC
* *
45230288 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATTC
45230353 TGATTCTGATTCTGTTACTG
66 TGATTCTGATT-TGTTACTG
* * *
45230373 ATTCTGATTCTGGTTCTGTCACCTAATTCTGATTCTGATTCTAATTTTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATTC
45230438 TGATTCTGATTTGTTACTG
66 TGATTCTGATTTGTTACTG
*
45230457 ATTCTGATTCTAATTCT
1 ATTCTGATTCTGATTCT
45230474 CATTTTGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 23 0.24
85 71 0.76
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (84 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATTC
TGATTCTGATTTGTTACTG
Found at i:45232515 original size:27 final size:27
Alignment explanation
Indices: 45232485--45233077 Score: 665
Period size: 27 Copynumber: 22.2 Consensus size: 27
45232475 AAAGTACTCC
*
45232485 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45232512 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
45232539 CGATTTTGAAAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
45232566 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45232592 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45232619 CGATTTACAGAATTATCG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
45232645 TAATTTTA-A-AATTA-C-TATTTACCCT
1 CGA-TTTACAGAATTACCGT-TTTACCCT
* *
45232670 CGATTTACAGAATTATCGTTTTAACCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45232697 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45232724 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45232751 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
45232778 CGATTTATATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
45232805 CGATTTGTA-AATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45232831 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45232858 -AAGTTTACAGAATTACTG-TTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45232884 CGATTTACAGAATTGCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45232911 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45232938 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
45232965 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45232992 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45233019 C-AGTTTAGAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45233046 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45233073 TGATT
1 CGATT
45233078 GTGAAATTAC
Statistics
Matches: 488, Mismatches: 56, Indels: 44
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.01
25 16 0.03
26 86 0.18
27 375 0.77
28 6 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:45233109 original size:81 final size:81
Alignment explanation
Indices: 45232485--45233097 Score: 308
Period size: 80 Copynumber: 7.7 Consensus size: 81
45232475 AAAGTACTCC
* * ** ** *
45232485 CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC-CATTTTACCCTC-GATTTTGA
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGA-AATACCCTCAG-GGTAGA
* *
45232548 AAATTATCATTTTACCCT
64 AAATTACCGTTTTACCCT
* * * *** ** *
45232566 CGATTTAC-AAATTACCGTTTTACCC-TCAGTTTATAGAATTACCGTTTTACCCTC-GATTTACA
1 CGATTTACAAAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGAAATACCCTCAG-GGTAGA
* *
45232628 GAATTATCG-TTTACCCT
64 AAATTACCGTTTTACCCT
** * * *** * ** *
45232645 TAATTT-TAAAATTA-C-TATTTACCCTCGATTTACAGAATTA-TCGTTTTAACCTCAGTTTACA
1 CGATTTACAAAATTACCGT-TTTACCCTTGATTTACAGAATTACT-GAAATACCCTCAGGGTAGA
* *
45232706 GAATTACTGTTTTACCCT
64 AAATTACCGTTTTACCCT
* * * * *** ** *
45232724 CGATTTACAGAATTACTGTTTTACCC-TCAGTTTATAGAATTACTGTTTTACCCTC-GATTTATA
1 CGATTTACAAAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGAAATACCCTCAG-GGTAGA
* *
45232787 TAATTATCGTTTTACCCT
64 AAATTACCGTTTTACCCT
** * * *** * ** * *
45232805 CGATTT-GTAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTAAGTTTACAGA
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
*
45232869 ATTACTG-TTTACCCT
66 ATTACCGTTTTACCCT
* * * *** ** *
45232884 CGATTTACAGAATTGCCGTTTTACCC-TCAGTTTACAGAATTACTGTTTTACCCTC-GATTTACA
1 CGATTTACAAAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGAAATACCCTCAG-GGTAGA
45232947 AAATTACCGTTTTACCCT
64 AAATTACCGTTTTACCCT
** *** **
45232965 CGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTAGAAA
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
*
45233030 ATTATCGTTTTACCCT
66 ATTACCGTTTTACCCT
* *
45233046 CGATTTACAGAATTACCGTTTTACCCTTGATTGT-GA-AATTACTGAAATACCC
1 CGATTTACAAAATTACCGTTTTACCCTTGATT-TACAGAATTACTGAAATACCC
45233098 CATAGGGTAG
Statistics
Matches: 439, Mismatches: 70, Indels: 47
0.79 0.13 0.08
Matches are distributed among these distances:
77 1 0.00
78 42 0.10
79 49 0.11
80 171 0.39
81 170 0.39
82 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (81 bp):
CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
ATTACCGTTTTACCCT
Found at i:45233111 original size:26 final size:27
Alignment explanation
Indices: 45233082--45233192 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 27
45233072 TTGATTGTGA
*
45233082 AATTACTGAAATACCCC-ATAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
* * *
45233108 AATTTC-GAAATACCCCTATAAGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
* *
45233134 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTAAAATACCCCTATAGGGTAG
* *
45233161 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
45233188 AATTA
1 AATTA
45233193 TCGAGATACC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
25 10 0.14
26 18 0.25
27 44 0.61
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (27 bp):
AATTACTAAAATACCCCTATAGGGTAG
Found at i:45233212 original size:27 final size:27
Alignment explanation
Indices: 45233100--45233222 Score: 113
Period size: 27 Copynumber: 4.6 Consensus size: 27
45233090 AAATACCCCA
* * * *
45233100 TAGGGTAGAATT-TCGAAATACCCCTA
1 TAGGGTAGAATTACCAAAATACCCTTG
* * *
45233126 TAAGGTAGAATTACTAAAATACCCTTA
1 TAGGGTAGAATTACCAAAATACCCTTG
* *
45233153 TAGGATAGAATTACCAAAATACCCCTG
1 TAGGGTAGAATTACCAAAATACCCTTG
* * *
45233180 TAGGGTAGAATTATCGAGATACCCTTG
1 TAGGGTAGAATTACCAAAATACCCTTG
* *
45233207 TGGGGTAAAATTACCA
1 TAGGGTAGAATTACCA
45233223 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 11 0.14
27 66 0.86
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTACCAAAATACCCTTG
Found at i:45233458 original size:27 final size:26
Alignment explanation
Indices: 45233420--45233502 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
45233410 CGAAGGAAGC
45233420 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
45233447 GTTCTGGTGGCTCTGGCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
45233473 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
45233500 GTT
1 GTT
45233503 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:45233842 original size:27 final size:25
Alignment explanation
Indices: 45233810--45233883 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
45233800 TTAGGTGGGT
*
45233810 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
45233837 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
45233864 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
45233884 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:45234010 original size:6 final size:6
Alignment explanation
Indices: 45234001--45234186 Score: 145
Period size: 6 Copynumber: 30.8 Consensus size: 6
45233991 TTGCATTCAC
* *
45234001 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
45234050 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * * *
45234098 GTTCTG -TCACCTA ATTCTG ATTCTG ATTCTA ATT-TG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
45234146 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTA ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45234187 CATTTTGGTT
Statistics
Matches: 145, Mismatches: 18, Indels: 34
0.74 0.09 0.17
Matches are distributed among these distances:
4 2 0.01
5 10 0.07
6 120 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:45234065 original size:30 final size:30
Alignment explanation
Indices: 45234001--45234186 Score: 215
Period size: 30 Copynumber: 6.4 Consensus size: 30
45233991 TTGCATTCAC
* *
45234001 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
45234032 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
45234062 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* * *
45234086 ATTCTGATTCTGGTTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
* *
45234117 ATTCTGATTCTAATT-TGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
45234146 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
45234176 ATTCTAATTCT
1 ATTCTGATTCT
45234187 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 14, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
24 22 0.17
26 1 0.01
29 22 0.17
30 50 0.38
31 38 0.29
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:45236236 original size:27 final size:27
Alignment explanation
Indices: 45236192--45236778 Score: 686
Period size: 27 Copynumber: 22.2 Consensus size: 27
45236182 AAAGTACTCC
45236192 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
45236218 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45236245 CGATTT-TA-AATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236270 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236297 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45236324 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** **
45236351 -TATTTTTA-AATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236376 CGATTTACAGAATTATCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236402 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45236429 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45236456 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
45236483 CGATTTATATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
45236510 CGATTTGTA-AATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236535 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45236562 AG-TTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236588 CGATTTACAGAATT-GCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236614 C-AGTTTA-AGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45236640 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
45236666 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45236693 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45236720 C-AGTTTAGAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45236747 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45236774 TGATT
1 CGATT
45236779 GTGAAATTAC
Statistics
Matches: 482, Mismatches: 57, Indels: 43
0.83 0.10 0.07
Matches are distributed among these distances:
25 61 0.13
26 134 0.28
27 283 0.59
28 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:45236437 original size:159 final size:160
Alignment explanation
Indices: 45236200--45236773 Score: 839
Period size: 159 Copynumber: 3.6 Consensus size: 160
45236190 CCCGATTTAC
* * *
45236200 AAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTT-TA-AATTATCAT
1 AAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTATCGT
* *
45236262 TTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGA
65 TTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGA
*
45236327 TTTACAGAATTATCGTTTTACCCT-TATTTTT
130 TTTACA-AATTATCGTTTTACCCTCGATTTTT
**
45236358 AAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTA-CCTCAGTTTACAGAATTA-CTG
1 AAATTACCGTTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCAGTTTACAGAATTATC-G
*
45236420 TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCG
64 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCG
* *
45236485 ATTTATATAATTATCGTTTTACCCTCGATTTGT
129 ATTTACA-AATTATCGTTTTACCCTCGATTTTT
45236518 AAATTA-CGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT-AGTTTACAGAATTA-CTGT
1 AAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTATC-GT
*
45236580 TTTACCCTCGATTTACAGAATT-GCGTTTTACCCTCAGTTTA-AGAATTACTGTTTTACCCTCGA
65 TTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGA
* *
45236643 TTTACAAATTACCGTTTTACCCTCGATTTGTA
130 TTTACAAATTATCGTTTTACCCTCGATTT-TT
* * * *
45236675 AAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTAGAAAATTATCGTT
1 AAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTATCGTT
45236740 TTACCCTCGATTTACAGAATTACCGTTTTACCCT
66 TTACCCTCGATTTACAGAATTACCGTTTTACCCT
45236774 TGATTGTGAA
Statistics
Matches: 378, Mismatches: 25, Indels: 24
0.89 0.06 0.06
Matches are distributed among these distances:
156 22 0.06
157 40 0.11
158 93 0.25
159 196 0.52
160 27 0.07
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (160 bp):
AAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTATCGTT
TTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGAT
TTACAAATTATCGTTTTACCCTCGATTTTT
Found at i:45236689 original size:264 final size:265
Alignment explanation
Indices: 45236200--45236788 Score: 861
Period size: 264 Copynumber: 2.2 Consensus size: 265
45236190 CCCGATTTAC
*
45236200 AAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT-TAAATTATCATTT
1 AAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAATTA-CATTT
*
45236264 TACCCTCGATTTACAAAATTACCGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGATT
65 TACCCTCGATTTACAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATT
* * * * *
45236329 TACAGAATTATCGTTTTACCCTTATTTTTAAATTACTATTTTACCCTCGATTTACAGAATTATCG
130 TACAGAATTAGCGTTTTACCCTCAGTTTAAAATTACTATTTTACCCTCGATTTACAGAATTACCG
* *
45236394 TTTTACCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG
195 TTTTACCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGGTTTACCCTCAG
*
45236459 TTTATA
260 TTTAGA
* * * * *
45236465 GAATTACTGTTTTACCCTCGATTTATATAATTATCGTTTTACCCTCGATTTGTAAATTACGTTTT
1 AAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAATTACATTTT
* * *
45236530 ACCCTCGATTTACAGAATTACTGTTTTACCCT-AGTTTACAGAATTACTGTTTTACCCTCGATTT
66 ACCCTCGATTTACAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTT
*
45236594 ACAGAATT-GCGTTTTACCCTCAGTTTAAGAATTACTGTTTTACCCTCGATTTACA-AATTACCG
131 ACAGAATTAGCGTTTTACCCTCAGTTTAA-AATTACTATTTTACCCTCGATTTACAGAATTACCG
* *
45236657 TTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCT
195 TTTTA-CCTC-AGTT-TACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGGTTTACCCT
45236720 CAGTTTAGA
257 CAGTTTAGA
*
45236729 AAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGA-TTGTGAAATTAC
1 AAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGT-AAATTAC
45236789 TGAAATACCC
Statistics
Matches: 291, Mismatches: 26, Indels: 15
0.88 0.08 0.05
Matches are distributed among these distances:
263 33 0.11
264 164 0.56
265 85 0.29
266 9 0.03
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (265 bp):
AAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAATTACATTTT
ACCCTCGATTTACAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTT
ACAGAATTAGCGTTTTACCCTCAGTTTAAAATTACTATTTTACCCTCGATTTACAGAATTACCGT
TTTACCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGGTTTACCCTCAGT
TTAGA
Found at i:45236810 original size:81 final size:81
Alignment explanation
Indices: 45236192--45236798 Score: 293
Period size: 79 Copynumber: 7.7 Consensus size: 81
45236182 AAAGTACTCC
* * *** * ***
45236192 CGATTTAC-AAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC--GATTTTAA
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
* *
45236254 ATTATCATTTTACCCT
66 ATTACCGTTTTACCCT
* * * *** ** *
45236270 CGATTTACAAAATTACCGTTTTACCC-TCAGTTTATAGAATTACCGTTTTACCCTC-GATTTACA
1 CGATTTACAAAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGAAATACCCTCAG-GGTAGA
* *
45236333 GAATTATCGTTTTACCCT
64 AAATTACCGTTTTACCCT
* ** ** * *** ** * *
45236351 -TATTT-TTAAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTA-CCTCAGTTTACAG
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACT-GAAATACCCTCAGGGTAGAA
*
45236412 AATTACTGTTTTACCCT
65 AATTACCGTTTTACCCT
* * * * *** ** *
45236429 CGATTTACAGAATTACTGTTTTACCC-TCAGTTTATAGAATTACTGTTTTACCCTC-GATTTATA
1 CGATTTACAAAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGAAATACCCTCAG-GGTAGA
* *
45236492 TAATTATCGTTTTACCCT
64 AAATTACCGTTTTACCCT
** * *** ** * *
45236510 CGATTT-GTAAATTA-CGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT-AGTTTACAGA
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
*
45236572 ATTACTGTTTTACCCT
66 ATTACCGTTTTACCCT
* * * *** ** *
45236588 CGATTTACAGAATT-GCGTTTTACCC-TCAGTTTA-AGAATTACTGTTTTACCCTC-GATTTA-C
1 CGATTTACAAAATTACCGTTTTACCCTTGA-TTTACAGAATTACTGAAATACCCTCAG-GGTAGA
45236648 AAATTACCGTTTTACCCT
64 AAATTACCGTTTTACCCT
** *** **
45236666 CGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTAGAAA
1 CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
*
45236731 ATTATCGTTTTACCCT
66 ATTACCGTTTTACCCT
* *
45236747 CGATTTACAGAATTACCGTTTTACCCTTGATTGT-GA-AATTACTGAAATACCC
1 CGATTTACAAAATTACCGTTTTACCCTTGATT-TACAGAATTACTGAAATACCC
45236799 CATAGGGTAG
Statistics
Matches: 436, Mismatches: 67, Indels: 50
0.79 0.12 0.09
Matches are distributed among these distances:
78 109 0.25
79 148 0.34
80 82 0.19
81 96 0.22
82 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.41
Consensus pattern (81 bp):
CGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGAAATACCCTCAGGGTAGAAA
ATTACCGTTTTACCCT
Found at i:45236873 original size:27 final size:26
Alignment explanation
Indices: 45236783--45236958 Score: 183
Period size: 27 Copynumber: 6.7 Consensus size: 26
45236773 TTGATTGTGA
* *
45236783 AATTACTGAAATACCCCATAGGGTAG
1 AATTACCGAAATACCCTATAGGGTAG
**
45236809 AATTTTCGAAATACCCCTATA-GGTAG
1 AATTACCGAAATA-CCCTATAGGGTAG
* *
45236835 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCC-TATAGGGTAG
* *
45236862 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTATAGGGTAG
* *
45236889 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCC-TATAGGGTAG
* *
45236916 AAATACCGAAATACCCTGTAGGGTAG
1 AATTACCGAAATACCCTATAGGGTAG
* *
45236942 AATTATCGAGATACCCT
1 AATTACCGAAATACCCT
45236959 TGTGGGGTAA
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
25 3 0.02
26 56 0.44
27 64 0.51
28 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (26 bp):
AATTACCGAAATACCCTATAGGGTAG
Found at i:45236876 original size:53 final size:54
Alignment explanation
Indices: 45236790--45236975 Score: 227
Period size: 53 Copynumber: 3.5 Consensus size: 54
45236780 TGAAATTACT
* ** *
45236790 GAAATACCC-CATAGGGTAGAATTTTCGAAATACCCCTATA-GGTAGAATTA-C
1 GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
* *
45236841 TGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATC
1 -GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
* *
45236896 GAAATACCCTTGTAGGGTAGAAATACCGAAATA-CCCTGTAGGGTAGAATTATC
1 GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
* * * *
45236949 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTATAGGGTAGAATTACC
45236976 ATTTTGCCCC
Statistics
Matches: 117, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
52 9 0.08
53 68 0.58
54 39 0.33
55 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
Found at i:45237212 original size:27 final size:26
Alignment explanation
Indices: 45237174--45237256 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
45237164 CGGAGGAAGC
*
45237174 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
45237201 GTTCTGGTGGCTCTGGCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
45237227 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
45237254 GTT
1 GTT
45237257 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:45237376 original size:22 final size:22
Alignment explanation
Indices: 45237344--45237402 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45237334 CCCGTTATTA
*
45237344 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
45237366 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
45237388 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
45237403 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:45237589 original size:27 final size:27
Alignment explanation
Indices: 45237567--45237640 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
45237557 TAGGTGGGTT
*
45237567 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
45237594 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
45237621 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
45237641 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:45237765 original size:6 final size:6
Alignment explanation
Indices: 45237756--45237938 Score: 145
Period size: 6 Copynumber: 30.8 Consensus size: 6
45237746 TTGCATTCAC
* *
45237756 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
45237805 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
45237853 -TTCTG -TCACCTA ATTCTG ATTCTG ATTCT- ATT-TG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
45237899 ATTCTG ATTCTG ATT-TG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45237939 CATTTTGGTT
Statistics
Matches: 144, Mismatches: 14, Indels: 38
0.73 0.07 0.19
Matches are distributed among these distances:
4 5 0.03
5 17 0.12
6 109 0.76
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45237820 original size:30 final size:30
Alignment explanation
Indices: 45237756--45237938 Score: 215
Period size: 30 Copynumber: 6.4 Consensus size: 30
45237746 TTGCATTCAC
* *
45237756 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
45237787 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
45237817 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
45237841 ATTCTGATTCTG-TTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
45237871 ATTCTGATTCT-ATT-TGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
45237899 ATTCTGATTCTGATT-TGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
45237928 ATTCTGATTCT
1 ATTCTGATTCT
45237939 CATTTTGGTT
Statistics
Matches: 134, Mismatches: 9, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
23 5 0.04
24 17 0.13
26 1 0.01
28 19 0.14
29 29 0.22
30 42 0.31
31 21 0.16
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:45239983 original size:27 final size:27
Alignment explanation
Indices: 45239936--45240525 Score: 677
Period size: 27 Copynumber: 22.2 Consensus size: 27
45239926 AAAGTACTCC
45239936 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45239962 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
45239989 CGATTTTGAAAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
45240016 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45240042 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45240069 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** **
45240096 -TATTTTTA-AATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45240121 CGATTTACAGAATTATCGTTTTAACCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45240148 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45240175 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45240202 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
45240229 CGATTTATATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
45240256 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
45240283 CGATTTACAGAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45240309 AG-TTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45240335 CGATTTACAGAATTGCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45240362 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45240389 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
45240415 CGATTTGTAAAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45240441 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45240468 C-AGTTTAGAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45240495 CGATTTACAGAATTACCG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45240521 TGATT
1 CGATT
45240526 GTGAAATTAC
Statistics
Matches: 483, Mismatches: 63, Indels: 36
0.83 0.11 0.06
Matches are distributed among these distances:
25 27 0.06
26 124 0.26
27 327 0.68
28 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:45240170 original size:106 final size:106
Alignment explanation
Indices: 45239939--45240537 Score: 736
Period size: 106 Copynumber: 5.6 Consensus size: 106
45239929 GTACTCCCGA
* * *
45239939 TTTACA-AATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTTGAAAATT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT-TATTTT-AAAATT
*
45240003 A-TCATTTTACCCTCGATTTACA-AATTACCGTTTTACCCTCAG
64 ACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * *
45240045 TTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTATTTTTAAATTAC
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTATTTTAAAATTAC
* * *
45240110 TATTTTACCCTCGATTTACAGAATTATCGTTTTAACCTCAG
66 TGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * *
45240151 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTA-TTT-TAAAATT
* * * *
45240216 ACTGTTTTACCCTCGATTTATATAATTATCGTTTTACCCTCGAT
64 ACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AG
*
45240260 TTGTA-A-AATTA-TCGTTTTACCCTCGATTTACAGAATTA-CGTTTTACCC-TAGTTTACAGAA
1 TT-TACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTATTTTA-A-AA
*
45240320 TTACTGTTTTACCCTCGATTTACAGAATTGCCGTTTTACCCTCAG
62 TTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
*
45240365 TTTACAGAATTACTGTTTTACCCTCGATTTACA-AATTACCGTTTTACCCTCGATTTGTAAAATT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT-TATTT-TAAAATT
* * *
45240429 AC-GTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAG
64 ACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * *
45240471 TTTAGAAAATTA-TCGTTTTACCCTCGATTTACAGAATTACCG-TTTACCCTTGATTGTGAAATT
1 TTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTT-ATTTTAAAATT
45240534 ACTG
64 ACTG
45240538 AAATACCCCA
Statistics
Matches: 433, Mismatches: 39, Indels: 42
0.84 0.08 0.08
Matches are distributed among these distances:
104 4 0.01
105 45 0.10
106 230 0.53
107 70 0.16
108 76 0.18
109 6 0.01
110 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (106 bp):
TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTATTTTAAAATTAC
TGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
Found at i:45240559 original size:26 final size:27
Alignment explanation
Indices: 45240530--45240640 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 27
45240520 TTGATTGTGA
*
45240530 AATTACTGAAATACCCC-ATAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
* * *
45240556 AATTTC-GAAATACCCCTATAAGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
* *
45240582 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTAAAATACCCCTATAGGGTAG
* *
45240609 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
45240636 AATTA
1 AATTA
45240641 TCGAGATACC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
25 10 0.14
26 18 0.25
27 44 0.61
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (27 bp):
AATTACTAAAATACCCCTATAGGGTAG
Found at i:45240660 original size:27 final size:27
Alignment explanation
Indices: 45240548--45240670 Score: 113
Period size: 27 Copynumber: 4.6 Consensus size: 27
45240538 AAATACCCCA
* * * *
45240548 TAGGGTAGAATT-TCGAAATACCCCTA
1 TAGGGTAGAATTACCAAAATACCCTTG
* * *
45240574 TAAGGTAGAATTACTAAAATACCCTTA
1 TAGGGTAGAATTACCAAAATACCCTTG
* *
45240601 TAGGATAGAATTACCAAAATACCCCTG
1 TAGGGTAGAATTACCAAAATACCCTTG
* * *
45240628 TAGGGTAGAATTATCGAGATACCCTTG
1 TAGGGTAGAATTACCAAAATACCCTTG
* *
45240655 TGGGGTAAAATTACCA
1 TAGGGTAGAATTACCA
45240671 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 11 0.14
27 66 0.86
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTACCAAAATACCCTTG
Found at i:45240905 original size:27 final size:26
Alignment explanation
Indices: 45240867--45240949 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
45240857 ACGAGGAAGC
45240867 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
45240894 GTTCTGGTGGCTCTGGCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
45240920 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
45240947 GTT
1 GTT
45240950 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:45241287 original size:27 final size:25
Alignment explanation
Indices: 45241255--45241328 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
45241245 TTAGGTGGGT
*
45241255 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
45241282 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
45241309 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
45241329 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:45241454 original size:6 final size:6
Alignment explanation
Indices: 45241445--45241627 Score: 145
Period size: 6 Copynumber: 30.8 Consensus size: 6
45241435 TTGCATTCAC
* *
45241445 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
45241494 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
45241542 -TTCTG -TCACCTA ATTCTG ATTCTG ATTCT- ATT-TG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
45241588 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCT- ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45241628 CATTTTGGTT
Statistics
Matches: 145, Mismatches: 14, Indels: 37
0.74 0.07 0.19
Matches are distributed among these distances:
4 3 0.02
5 22 0.15
6 107 0.74
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45241509 original size:30 final size:30
Alignment explanation
Indices: 45241445--45241627 Score: 215
Period size: 30 Copynumber: 6.4 Consensus size: 30
45241435 TTGCATTCAC
* *
45241445 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
45241476 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
45241506 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
45241530 ATTCTGATTCTG-TTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
45241560 ATTCTGATTCT-ATT-TGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
45241588 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
45241618 ATTCT-ATTCT
1 ATTCTGATTCT
45241628 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 9, Indels: 22
0.81 0.05 0.13
Matches are distributed among these distances:
23 5 0.04
24 17 0.13
26 1 0.01
28 19 0.14
29 12 0.09
30 58 0.44
31 21 0.16
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:45243671 original size:27 final size:27
Alignment explanation
Indices: 45243627--45244218 Score: 686
Period size: 27 Copynumber: 22.2 Consensus size: 27
45243617 AAAGTACTCC
45243627 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
45243653 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
45243680 CGATTTTGAAAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
45243707 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45243733 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45243760 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * **
45243787 -TATTT-TA-AATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45243811 CGATTTACAGAATTATCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45243837 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45243864 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45243891 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
45243918 CGATTTATATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
45243945 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45243972 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45243999 AG-TTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45244025 CGATTTACAGAATTGCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
45244052 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
45244079 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
45244106 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45244133 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
45244160 C-AGTTTAGAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
45244187 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
45244214 TGATT
1 CGATT
45244219 GTGAAATTAC
Statistics
Matches: 484, Mismatches: 65, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
24 14 0.03
25 7 0.01
26 85 0.18
27 373 0.77
28 5 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:45244230 original size:161 final size:162
Alignment explanation
Indices: 45243635--45244213 Score: 863
Period size: 161 Copynumber: 3.6 Consensus size: 162
45243625 CCCGATTTAC
* * ** *
45243635 AAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTTTGAAAATTA-TCA
1 AAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG-TTTACAAAATTACT-G
*
45243698 TTTTACCCTCGATTTACA-AATTACCGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCG
64 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCG
* *
45243762 ATTTACAGAATTATCGTTTTACCCT-TATTT-T-
129 ATTTACAAAATTATCGTTTTACCCTCGATTTGTA
* *
45243793 AAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTA-CCTCAGTTTACAGAATTACTGT
1 AAATTACCATTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCAGTTTACAAAATTACTGT
*
45243856 TTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGA
65 TTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGA
* *
45243921 TTTATATAATTATCGTTTTACCCTCGATTTGTA
130 TTTACAAAATTATCGTTTTACCCTCGATTTGTA
* * *
45243954 AAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT-AGTTTACAGAATTACTGTT
1 AAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTT
*
45244018 TTACCCTCGATTTACAGAATTGCCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGAT
66 TTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGAT
*
45244083 TTACAAAATTACCGTTTTACCCTCGATTTGTA
131 TTACAAAATTATCGTTTTACCCTCGATTTGTA
* * *
45244115 AAATTACCATTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTAGAAAATTA-TCGT
1 AAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAAAATTACT-GT
45244179 TTTACCCTCGATTTACAGAATTACCGTTTTACCCT
65 TTTACCCTCGATTTACAGAATTACCGTTTTACCCT
45244214 TGATTGTGAA
Statistics
Matches: 383, Mismatches: 27, Indels: 18
0.89 0.06 0.04
Matches are distributed among these distances:
157 31 0.08
158 106 0.28
159 4 0.01
160 1 0.00
161 189 0.49
162 52 0.14
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.42
Consensus pattern (162 bp):
AAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTT
TTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGAT
TTACAAAATTATCGTTTTACCCTCGATTTGTA
Found at i:45244313 original size:27 final size:27
Alignment explanation
Indices: 45244223--45244416 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
45244213 TTGATTGTGA
*
45244223 AATTACTGAAATACCCC-ATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
**
45244249 AATTTTCGAAATACCCCTATA-GGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
45244275 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
45244302 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
45244329 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
45244356 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * * * *
45244383 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
45244410 AATTACC
1 AATTACC
45244417 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 36 0.26
27 104 0.74
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:45244357 original size:54 final size:54
Alignment explanation
Indices: 45244241--45244417 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
45244231 AAATACCCCA
** * * *
45244241 TAGGGTAGAATTTTCGAAATACCCCTATA-GGTAGAATTA-CTGAAATACCCTTA
1 TAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCTTG
*
45244294 TAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTG
1 TAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTG
* * *
45244348 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTG
1 TAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTG
* *
45244402 TGGGGTAAAATTACCA
1 TAGGGTAGAATTACCA
45244418 TTTTGCCCCT
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
53 24 0.22
54 83 0.77
55 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
TAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTG
Found at i:45244653 original size:27 final size:26
Alignment explanation
Indices: 45244615--45244697 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
45244605 CGGAGGAAGC
*
45244615 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
* *
45244642 GTTCTGGTGGCTCTGGCACAATATAT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
45244668 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
45244695 GTT
1 GTT
45244698 GACCGATCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:45244817 original size:22 final size:22
Alignment explanation
Indices: 45244785--45244843 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45244775 CCCGTTATTA
*
45244785 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
45244807 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
45244829 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
45244844 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:45245070 original size:27 final size:27
Alignment explanation
Indices: 45245007--45245079 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
45244997 TAGGTGGGTT
* * *
45245007 TGCCACATTATCTG-ATTTGGTGGCTC
1 TGCCACAATATCTGTATCTGGTGACTC
45245033 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
* *
45245060 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
45245080 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 18 0.44
27 23 0.56
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:45245205 original size:6 final size:6
Alignment explanation
Indices: 45245196--45245382 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
45245186 TTGCATTCAC
* *
45245196 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
45245245 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
45245293 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
45245342 ATTCTG ATTCTA ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
45245383 CATTTTGGTT
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 123 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:45245336 original size:85 final size:85
Alignment explanation
Indices: 45245196--45245382 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
45245186 TTGCATTCAC
*
45245196 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
45245261 TGATTCTGATTCTGTTACTG
66 TGATTCTAATTCTGTTACTG
* *
45245281 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
45245346 TGATTCTAATTCTGTTACTG
66 TGATTCTAATTCTGTTACTG
45245366 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
45245383 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTAATTCTGTTACTG
Found at i:45245403 original size:30 final size:30
Alignment explanation
Indices: 45245196--45245382 Score: 244
Period size: 30 Copynumber: 6.4 Consensus size: 30
45245186 TTGCATTCAC
*
45245196 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
45245227 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
45245257 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
45245281 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
45245312 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
45245342 ATTCTGATTCTAATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
45245372 ATTCTGATTCT
1 ATTCTGATTCT
45245383 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 8, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
24 20 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 69 0.50
31 44 0.32
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:45248961 original size:19 final size:19
Alignment explanation
Indices: 45248937--45248982 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
45248927 CGGCATGAGG
45248937 ACACGGGCATGACAAAGGT
1 ACACGGGCATGACAAAGGT
*
45248956 ACACGGGCATGTCAAAGGT
1 ACACGGGCATGACAAAGGT
45248975 ACACGGGC
1 ACACGGGC
45248983 GTACCCCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.11
Consensus pattern (19 bp):
ACACGGGCATGACAAAGGT
Found at i:45251664 original size:3 final size:3
Alignment explanation
Indices: 45251656--45252055 Score: 116
Period size: 3 Copynumber: 134.3 Consensus size: 3
45251646 GTGATAATAC
** *
45251656 AAT AAT AAT AAT AA- AGC AA- AA- AAT AAC AAT AAT AAT ACATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT
* * ** *
45251700 GAG AAT AAT AAT AAT -AT AAT AAT AAT AGG AA- AA- AAT AAT -AT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
45251744 AAAG AAT AAT TAT AGT AA- AA- AAT AAT ATT AAA AAT AA- AAT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
45251787 AAT AAT ATT AAT AAA AAG AAT AAT AAA AAT AAA AAT AAT GAAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
* * * * * *
45251832 AAT AGT AAC ATAT AAT AAT AAGGG AAT AAC ACT AAT AAT AAA AAT -AT
1 AAT AAT AAT A-AT AAT AAT AA--T AAT AAT AAT AAT AAT AAT AAT AAT
* * * ** *
45251879 AGA- AGAT AAC AAA AAT AAT AA- ATAT AAT AAT GAT -AT GTT AAC AAT
1 A-AT A-AT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * *
45251924 AAT GAT TAT AA- AAA AAT AGAA AAT AAT AAT ATAT GAAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A-AT -AAT AAT AAT AAT
** * ** * * * * *
45251970 GCT AAA AAT AGC AAT AGT AAA AAT AGAA AAT AGT AAT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * *
45252016 AAA AAT TAT -AT AAAT AAT AAT AAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A
45252056 TTAAAATTAA
Statistics
Matches: 285, Mismatches: 83, Indels: 58
0.67 0.19 0.14
Matches are distributed among these distances:
2 32 0.11
3 227 0.80
4 21 0.07
5 5 0.02
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:45251738 original size:16 final size:16
Alignment explanation
Indices: 45251703--45251790 Score: 70
Period size: 16 Copynumber: 5.4 Consensus size: 16
45251693 CATTAATGAG
* *
45251703 AATAATAATAATATAAT
1 AATAATAGTAA-AAAAT
*
45251720 AATAATAGGAAAAAAT
1 AATAATAGTAAAAAAT
* *
45251736 AAT-ATATTAAAGAAT
1 AATAATAGTAAAAAAT
*
45251751 AATTATAGTAAAAAAT
1 AATAATAGTAAAAAAT
* **
45251767 AATATTAAAAATAAAAT
1 AATAATAGTAA-AAAAT
45251784 AATAATA
1 AATAATA
45251791 ATATTAATAA
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
15 12 0.21
16 24 0.43
17 20 0.36
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (16 bp):
AATAATAGTAAAAAAT
Found at i:45251999 original size:22 final size:21
Alignment explanation
Indices: 45251972--45252021 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
45251962 AATAATATGC
*
45251972 TAAAAATAGCAATAGTAAAAA
1 TAAAAATAGCAATAATAAAAA
*
45251993 TAGAAAATAGTAATAATAAAAA
1 TA-AAAATAGCAATAATAAAAA
45252015 TAAAAAT
1 TAAAAAT
45252022 TATATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
TAAAAATAGCAATAATAAAAA
Found at i:45252066 original size:15 final size:14
Alignment explanation
Indices: 45252031--45252082 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
45252021 TTATATAAAT
*
45252031 AATAATAATAATAA
1 AATAATAATATTAA
45252045 CAATAATAATATTAA
1 -AATAATAATATTAA
*
45252060 AATTAATTAATTTTAA
1 AA-TAA-TAATATTAA
45252076 AA-AATAA
1 AATAATAA
45252083 AATACCAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 3 0.09
14 4 0.12
15 16 0.48
16 10 0.30
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATAATATTAA
Found at i:45253769 original size:45 final size:44
Alignment explanation
Indices: 45253713--45253914 Score: 121
Period size: 45 Copynumber: 4.6 Consensus size: 44
45253703 CATCTTTGAT
*
45253713 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATTCCTCATC
1 CTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAATTCCTCATC
* * * ** * *
45253758 CTGCTCCACTACTACTCAGGGAGATAAGGT-T--AGTGGCTTA-A
1 CTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAATTCCTCATC
* ** * * *
45253799 ATTTTCCTACTACT-TTAGGAAGATAAGATTTGCAA-TCTTCGAT-
1 CTGCTCC-ACTACTCTTAGGGAGATAAGATCTGCAATTCCTC-ATC
* * *
45253842 CTGCTCCATTACTGCTTAGGGAGATAAGATCTGCAATTCCTTAGC
1 CTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAATTCCTCATC
* * *
45253887 CCGCTCCACTGCTATTCAGGGAGATAAG
1 CTGCTCCACTACTCTT-AGGGAGATAAG
45253915 GCTAGTGGCT
Statistics
Matches: 113, Mismatches: 33, Indels: 22
0.67 0.20 0.13
Matches are distributed among these distances:
40 12 0.11
41 5 0.04
42 17 0.15
43 6 0.05
44 23 0.20
45 50 0.44
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
CTGCTCCACTACTCTTAGGGAGATAAGATCTGCAATTCCTCATC
Found at i:45253845 original size:129 final size:132
Alignment explanation
Indices: 45253690--45253992 Score: 450
Period size: 129 Copynumber: 2.3 Consensus size: 132
45253680 CGTTACATGG
* *
45253690 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATTCCTC
1 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCCTC
* * * * *
45253755 ATCCTGCTCCACTACTACTCAGGGAGATAAGGTTAGTGGCTTAAAT-T-TT-CCTACTACTTTAG
66 AGCCCGCTCCACTACTACTCAGGGAGATAAGGCTAGTGGCTTAAATCTCTTCCCTACTACCTCAG
45253817 GA
131 GA
* * *
45253819 AGATAAGATTTGCAATCTTCGATCTGCTCCATTACTGCTTAGGGAGATAAGATCTGCAATTCCTT
1 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCCTC
* *
45253884 AGCCCGCTCCACTGCTATTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCA
66 AGCCCGCTCCACTACTACTCAGGGAGATAAGGCTAGTGGCTTAAATCT-CTTCCCTACTACCTCA
45253949 GGA
130 GGA
* *
45253952 AAATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTA
1 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
45253993 AGGAAATGAG
Statistics
Matches: 154, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
129 101 0.66
130 1 0.01
132 2 0.01
133 50 0.32
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCCTC
AGCCCGCTCCACTACTACTCAGGGAGATAAGGCTAGTGGCTTAAATCTCTTCCCTACTACCTCAG
GA
Found at i:45253877 original size:44 final size:44
Alignment explanation
Indices: 45253688--45253878 Score: 137
Period size: 44 Copynumber: 4.4 Consensus size: 44
45253678 GTCGTTACAT
* * * * *
45253688 GGAGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAG
1 GGAGATAAGATCTGCAATCTTCGATCTGCTCCACTACTACTTAG
* *
45253732 GGAGATAAGATCTGCAATTCCTC-ATCCTGCTCCACTACTACTCAG
1 GGAGATAAGATCTGCAA-TCTTCGAT-CTGCTCCACTACTACTTAG
* * ** *
45253777 GGAGATAAGGT-T--AGTGGCTTAAAT-T--TTC-CTACTACTTTAG
1 GGAGATAAGATCTGCAAT--CTTCGATCTGCTCCACTACTAC-TTAG
* * * *
45253817 GAAGATAAGATTTGCAATCTTCGATCTGCTCCATTACTGCTTAG
1 GGAGATAAGATCTGCAATCTTCGATCTGCTCCACTACTACTTAG
45253861 GGAGATAAGATCTGCAAT
1 GGAGATAAGATCTGCAAT
45253879 TCCTTAGCCC
Statistics
Matches: 111, Mismatches: 23, Indels: 26
0.69 0.14 0.16
Matches are distributed among these distances:
39 7 0.06
40 14 0.13
41 7 0.06
42 3 0.03
43 4 0.04
44 42 0.38
45 34 0.31
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
GGAGATAAGATCTGCAATCTTCGATCTGCTCCACTACTACTTAG
Found at i:45260546 original size:30 final size:30
Alignment explanation
Indices: 45260497--45260554 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
45260487 TAGGCACTTC
* *
45260497 CACATGGGTGATCCACACGCCCGTGTGTGA
1 CACACGGGTGATCCACACGCCCATGTGTGA
45260527 CACACGGGTAGAT-CACACGCCCATGTGT
1 CACACGGGT-GATCCACACGCCCATGTGT
45260555 CATGGTCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGGTGATCCACACGCCCATGTGTGA
Found at i:45264127 original size:27 final size:27
Alignment explanation
Indices: 45264086--45264139 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
45264076 TGTCATGTGA
* *
45264086 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
45264113 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
45264140 GGTTATATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:45264506 original size:51 final size:50
Alignment explanation
Indices: 45264389--45264629 Score: 265
Period size: 49 Copynumber: 4.8 Consensus size: 50
45264379 TTGTGAGGTT
* * * *
45264389 ACGTGTGTAGTACTAAGTTCAGGCTACTACGTGTACCGGATTA-TTGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTTGGTC
* * * * * *
45264438 GCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAACTTTGATC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TTTGGTC
* ** *
45264489 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTTGGTC
* * * *
45264539 ACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCGGATAA-TTGGTTGC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTTGG-T-C
45264590 AC--GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
45264630 GCTTTGGCCA
Statistics
Matches: 158, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 73 0.46
50 42 0.27
51 43 0.27
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTTGGTC
Found at i:45264628 original size:99 final size:99
Alignment explanation
Indices: 45264393--45264628 Score: 287
Period size: 101 Copynumber: 2.4 Consensus size: 99
45264383 GAGGTTACGT
* * * * *
45264393 GTGTAGTACTAAGTTCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACTAAGTAC
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTAC
* * * *
45264458 AGGCTACTATGCGTACCCGATAACTTTGATCACG
66 AAGCTACTACGCATACCCGATAACTTGGATCACG
* * *
45264492 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 -GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGATT-GGTCACATGTGTAGTACTAAGT
* * * *
45264557 GCAAGCTACTACGTATACCGGATAA-TTGGTTGCAC-
64 ACAAGCTACTACGCATACCCGATAACTTGGAT-CACG
45264592 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
45264629 AGCTTTGGCC
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 36 0.31
100 39 0.33
101 42 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (99 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTAC
AAGCTACTACGCATACCCGATAACTTGGATCACG
Found at i:45270141 original size:80 final size:80
Alignment explanation
Indices: 45270008--45270263 Score: 367
Period size: 80 Copynumber: 3.2 Consensus size: 80
45269998 GATGATAACG
* *
45270008 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
45270073 CGAGTTACTA-ATTCC
66 CGAGTTACTATA-TCC
* *
45270088 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
45270153 CGAGTTACTATATCC
66 CGAGTTACTATATCC
* ** *
45270168 GGGCTAGGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
45270232 GCGAG-TAGCTATATCC
65 GCGAGTTA-CTATATCC
* *
45270248 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
45270264 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
79 17 0.11
80 142 0.89
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:45270249 original size:40 final size:40
Alignment explanation
Indices: 45270008--45270237 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
45269998 GATGATAACG
* *
45270008 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
45270048 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
45270088 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
45270128 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* **
45270168 GGGCTAGGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
45270208 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
45270238 AGCTATATCC
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 174 0.99
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Done.