Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 143 of 259
Found at i:46559260 original size:47 final size:47
Alignment explanation
Indices: 46559207--46559622 Score: 742
Period size: 47 Copynumber: 8.8 Consensus size: 47
46559197 TCACATCGGC
*
46559207 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46559254 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46559301 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46559348 CACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46559397 CACATATATACACTTTCACATTCATCACATCGGCGATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46559444 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46559491 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46559538 CACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
1 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46559587 CACATATATACACTTTCACATTCATCACATCGGCCA
1 CACATATATACACTTTCACATTCATCACATCGGCCA
46559623 CTTTCACATT
Statistics
Matches: 357, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
47 264 0.74
49 93 0.26
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:46559372 original size:143 final size:141
Alignment explanation
Indices: 46559207--46559765 Score: 776
Period size: 143 Copynumber: 3.8 Consensus size: 141
46559197 TCACATCGGC
*
46559207 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
*
46559272 CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCA
66 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
46559337 TTAGGCCTTAT
131 TTAGGCCTTAT
46559348 CACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 CACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
*
46559413 CACATTCATCACATCGGCGATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
64 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
46559478 TATTAGGCCTTAT
129 CATTAGGCCTTAT
46559491 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTT
* *
46559556 CACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
64 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*** *
46559621 CACTTTCACATTCAT
129 CA-TTAGGCCTT-AT
46559636 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 --CA-----CA-TA-----TAT---------ACACTTTCACATTCATCACATCGGCCATTAGGCC
46559701 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
44 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
46559766 GTCTTGGCTG
Statistics
Matches: 377, Mismatches: 13, Indels: 32
0.89 0.03 0.08
Matches are distributed among these distances:
141 50 0.13
143 214 0.57
144 5 0.01
145 2 0.01
147 2 0.01
152 2 0.01
153 2 0.01
158 3 0.01
165 56 0.15
167 41 0.11
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (141 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTAT
Found at i:46559530 original size:190 final size:190
Alignment explanation
Indices: 46559207--46559761 Score: 813
Period size: 190 Copynumber: 2.8 Consensus size: 190
46559197 TCACATCGGC
*
46559207 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
*
46559272 CATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCA
66 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
* *
46559337 TTAGGCCTTATCACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
*
46559397 CACATATATACACTTTCACATTCATCACATCGGCGATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
46559462 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
66 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
46559527 TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
131 TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
46559587 CACATATATACACTTTCACATTCATCACATCGGCCACTTTCACATTCATCACATCGGCCATTAGG
1 CACATATATACACTTTCACATTCATCACATCGG-------C-CA-T--T---A--GGCC-TTA--
* * *
46559652 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
47 --TCA-CAT--ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
*
46559717 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
107 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
46559762 CACTGTCTTG
Statistics
Matches: 332, Mismatches: 9, Indels: 24
0.91 0.02 0.07
Matches are distributed among these distances:
190 219 0.66
197 1 0.00
198 1 0.00
199 1 0.00
201 1 0.00
204 1 0.00
206 4 0.01
207 3 0.01
211 2 0.01
212 2 0.01
214 97 0.29
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (190 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
Found at i:46559627 original size:24 final size:24
Alignment explanation
Indices: 46559597--46559646 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
46559587 CACATATATA
46559597 CACTTTCACATTCATCACATCGGC
1 CACTTTCACATTCATCACATCGGC
46559621 CACTTTCACATTCATCACATCGGC
1 CACTTTCACATTCATCACATCGGC
46559645 CA
1 CA
46559647 TTAGGCCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.38, G:0.08, T:0.28
Consensus pattern (24 bp):
CACTTTCACATTCATCACATCGGC
Found at i:46559627 original size:71 final size:71
Alignment explanation
Indices: 46559550--46559693 Score: 279
Period size: 71 Copynumber: 2.0 Consensus size: 71
46559540 CATATATATA
46559550 CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
46559615 ATCGGC
66 ATCGGC
*
46559621 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
46559686 ATCGGC
66 ATCGGC
46559692 CA
1 CA
46559694 TTAGGCCTTA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.31
Consensus pattern (71 bp):
CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGC
Found at i:46559641 original size:167 final size:165
Alignment explanation
Indices: 46559454--46559765 Score: 579
Period size: 167 Copynumber: 1.9 Consensus size: 165
46559444 CACATATATA
*
46559454 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
46559519 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCT
66 ATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGCCT
46559584 TATCACATATATACACTTTCACATTCATCACATCGGC
129 TATCACATATATACACTTTCACATTCATCACATCGGC
46559621 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
* *
46559686 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTA
46559751 TCACATATATACACT
131 TCACATATATACACT
46559766 GTCTTGGCTG
Statistics
Matches: 142, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
165 56 0.39
167 86 0.61
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (165 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTA
TCACATATATACACTTTCACATTCATCACATCGGC
Found at i:46559674 original size:47 final size:47
Alignment explanation
Indices: 46559621--46559765 Score: 281
Period size: 47 Copynumber: 3.1 Consensus size: 47
46559611 TCACATCGGC
46559621 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
46559668 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
46559715 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
46559762 CACT
1 CACT
46559766 GTCTTGGCTG
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:46559701 original size:118 final size:119
Alignment explanation
Indices: 46559501--46559738 Score: 451
Period size: 118 Copynumber: 2.0 Consensus size: 119
46559491 CACATATATA
46559501 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATC
46559566 ACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
65 ACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
46559621 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
*
46559685 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
46559739 TATTAGGCCT
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
118 77 0.66
120 40 0.34
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (119 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
CATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:46595798 original size:28 final size:28
Alignment explanation
Indices: 46595728--46595798 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
46595718 GCAATCAAAT
* * *
46595728 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
46595756 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
46595784 ATGTCACTTAGTGTG
1 ATGGCACTTAGTGTG
46595799 AAAAATATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:46595806 original size:28 final size:28
Alignment explanation
Indices: 46595745--46595806 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
46595735 TCAGTGTACG
**
46595745 AAATATTGAGAATGGCACTTAGTGTGCG
1 AAATATTGAGAATGGCACTTAGTGTGAA
* *
46595773 AGATATTGAGAATGTCACTTAGTGTGAA
1 AAATATTGAGAATGGCACTTAGTGTGAA
46595801 AAATAT
1 AAATAT
46595807 CGAATGATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGGCACTTAGTGTGAA
Found at i:46603677 original size:23 final size:23
Alignment explanation
Indices: 46603651--46603713 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
46603641 AAATGTCCAA
*
46603651 CCAAAACACACTAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
46603674 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
46603697 CCAAAACACACCAGTAT
1 CCAAAACACACCAGTAT
46603714 CATATAATCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.44, C:0.33, G:0.05, T:0.17
Consensus pattern (23 bp):
CCAAAACACACCAGTATAATCCT
Found at i:46603720 original size:28 final size:26
Alignment explanation
Indices: 46603665--46603768 Score: 124
Period size: 28 Copynumber: 3.9 Consensus size: 26
46603655 AACACACTAG
46603665 TATAATCCTCCAAAACACACCAG---
1 TATAATCCTCCAAAACACACCAGATA
46603688 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAG-AT-A
* *
46603716 TATAATCCTCCCAAACACACCAAAATAA
1 TATAATCCTCCAAAACACACC-AGAT-A
46603744 TATAATCCATCCAAAACACACCAGA
1 TATAATCC-TCCAAAACACACCAGA
46603769 ATAGCACAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
23 23 0.33
28 33 0.48
29 13 0.19
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (26 bp):
TATAATCCTCCAAAACACACCAGATA
Found at i:46603743 original size:23 final size:23
Alignment explanation
Indices: 46603631--46603744 Score: 95
Period size: 23 Copynumber: 4.7 Consensus size: 23
46603621 GATTCCATCC
* *
46603631 AAACACACCAAAAT-GTCCAACCA
1 AAACACACCAAAATAATCC-TCCA
* **
46603654 AAACACACTAGTATAATCCTCCA
1 AAACACACCAAAATAATCCTCCA
**
46603677 AAACACACCAGTATAATCCTCCA
1 AAACACACCAAAATAATCCTCCA
*
46603700 AAACACACCAGTATCATATAATCCTCCC
1 AAACACACCA--A--A-ATAATCCTCCA
46603728 AAACACACCAAAATAAT
1 AAACACACCAAAATAAT
46603745 ATAATCCATC
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
23 51 0.67
24 4 0.05
26 1 0.01
28 20 0.26
ACGTcount: A:0.47, C:0.32, G:0.04, T:0.17
Consensus pattern (23 bp):
AAACACACCAAAATAATCCTCCA
Found at i:46606034 original size:35 final size:35
Alignment explanation
Indices: 46605995--46606066 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
46605985 AAAAGTCACA
46605995 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
1 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
46606030 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
1 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
46606065 AA
1 AA
46606067 CTTACTTGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.61, C:0.11, G:0.08, T:0.19
Consensus pattern (35 bp):
AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
Found at i:46615099 original size:40 final size:40
Alignment explanation
Indices: 46615055--46615151 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
46615045 CAACTATTTG
* * * *
46615055 TGGCACGTAGTGTGTGATTCGACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATA
* * *
46615095 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGACTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATA
46615135 TGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
46615152 GATATCGAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATA
Found at i:46615198 original size:28 final size:28
Alignment explanation
Indices: 46615132--46615202 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
46615122 CTTCGACTAT
46615132 GTATGGCACTTAGTGTGCGAGATATCGA
1 GTATGGCACTTAGTGTGCGAGATATCGA
* * *
46615160 GTGTGGTACTTAGTGTGCGTGATATCGA
1 GTATGGCACTTAGTGTGCGAGATATCGA
*
46615188 GTATGACACTTAGTG
1 GTATGGCACTTAGTG
46615203 CGAGGCATTG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (28 bp):
GTATGGCACTTAGTGTGCGAGATATCGA
Found at i:46617941 original size:28 final size:27
Alignment explanation
Indices: 46617909--46618268 Score: 214
Period size: 27 Copynumber: 13.3 Consensus size: 27
46617899 TTTAGTTTAC
46617909 AAAATTACTAAAATACCCTCGATTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTGT
*
46617937 AAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTC-GATTTGT
*
46617964 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCTC-GATTTGT
*
46617992 AAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* * *
46618019 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTCGATTTGT
* **** * * **
46618046 AGAATTACTGTTTTACTCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTGT
* **** **
46618073 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTGT
**
46618100 AAAATTATCGT--TTTACCCTCGA-TTGT
1 AAAATTA-C-TAAAATACCCTCGATTTGT
* * * **
46618126 GAAATTACTGAAATACCC-CTATAGGGT
1 AAAATTACTAAAATACCCTCGAT-TTGT
* * *
46618153 AGAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTGT
* *
46618180 AAAATTACCAAAATACCACT-GGTTTGT
1 AAAATTACTAAAATACC-CTCGATTTGT
* ** *
46618207 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* **
46618234 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTGT
46618261 AAAATTAC
1 AAAATTAC
46618269 AGAAAAACCC
Statistics
Matches: 273, Mismatches: 46, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.00
25 3 0.01
26 16 0.06
27 203 0.74
28 49 0.18
29 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTGT
Found at i:46617977 original size:55 final size:55
Alignment explanation
Indices: 46617909--46618043 Score: 193
Period size: 55 Copynumber: 2.5 Consensus size: 55
46617899 TTTAGTTTAC
**
46617909 AAAATTACTAAAATACCCTCGATTTTGTAAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTTGTAAAATTACTAAAATACCCTC-GACTTGT
*
46617964 AAAATTACTAAAATACCCCCTGA-TTTGTAAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTC-GATTTTGTAAAATTACTAAAATACCCTCGACTTGT
* *
46618019 AAAATTACCAAAGTACCCTCGATTT
1 AAAATTACTAAAATACCCTCGATTT
46618044 ATAGAATTAC
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
54 2 0.03
55 66 0.93
56 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (55 bp):
AAAATTACTAAAATACCCTCGATTTTGTAAAATTACTAAAATACCCTCGACTTGT
Found at i:46618266 original size:54 final size:55
Alignment explanation
Indices: 46618155--46618335 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 55
46618145 TATAGGGTAG
* * * ***
46618155 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
*
46618209 AATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * * * * *
46618263 AATTACAGAAAAACCCT-TGACTTTCTAAAAATTA-TAGAAATACCA-TTAGTTTACAA
1 AATTACCGAAATACCCTCT-AATTTGT-AAAATTACCA-AAATACCACTGA-TTTACAA
*
46618319 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
46618336 TGGTTTGTAG
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
54 60 0.57
55 9 0.09
56 36 0.34
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:46618341 original size:27 final size:27
Alignment explanation
Indices: 46618234--46618341 Score: 85
Period size: 27 Copynumber: 3.9 Consensus size: 27
46618224 CTCAATTTGT
** * *
46618234 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* * *
46618261 AAAATTACAGAAAAACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
* *
46618288 TAAAAATTA-TAGAAATACCATTAGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
46618317 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
46618342 GTAGATTTAC
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
27 39 0.62
28 7 0.11
29 17 0.27
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:46618425 original size:27 final size:27
Alignment explanation
Indices: 46618382--46618455 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
46618372 AAATGACTAC
*
46618382 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
46618409 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
46618436 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
46618456 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:46618459 original size:27 final size:27
Alignment explanation
Indices: 46618395--46618459 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
46618385 ACCCCTAATA
*
46618395 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
46618422 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
46618449 GGTAAAATGAC
1 GGTAAAATGAC
46618460 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:46619112 original size:25 final size:25
Alignment explanation
Indices: 46619083--46619130 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
46619073 TTATAATGTG
46619083 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTGTTTTGCCCCTAGGTA
*
46619108 AAAATGACTGTTTTGCCCTTAGG
1 AAAATGACTGTTTTGCCCCTAGG
46619131 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
AAAATGACTGTTTTGCCCCTAGGTA
Found at i:46619191 original size:20 final size:20
Alignment explanation
Indices: 46619166--46619232 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
46619156 GGTATGATAA
46619166 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
46619186 ACATGATATGCATGATATGC
1 ACATGATATGTATGATATGC
*
46619206 ACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGC
46619226 ACATGAT
1 ACATGAT
46619233 GAATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:46619193 original size:11 final size:11
Alignment explanation
Indices: 46619177--46619232 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
46619167 CATGATTGAT
46619177 ATGATATGCAC
1 ATGATATGCAC
46619188 ATGATATG--C
1 ATGATATGCAC
46619197 ATGATATGCAC
1 ATGATATGCAC
*
46619208 ATGATATG--T
1 ATGATATGCAC
*
46619217 ATGAAATGCAC
1 ATGATATGCAC
46619228 ATGAT
1 ATGAT
46619233 GAATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:46619360 original size:52 final size:51
Alignment explanation
Indices: 46619282--46619404 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
46619272 GAGGAAGTGC
*
46619282 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
46619334 AAAAGGCCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
46619385 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
46619405 ATTAAAGAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 10 0.15
51 24 0.35
52 34 0.50
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:46619379 original size:25 final size:26
Alignment explanation
Indices: 46619282--46619404 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
46619272 GAGGAAGTGC
* **
46619282 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
46619308 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
46619334 AAAAGGCCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
46619360 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
46619385 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
46619405 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 33 0.38
26 55 0.62
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:46619608 original size:42 final size:42
Alignment explanation
Indices: 46619549--46619640 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
46619539 TAGTCTCCCC
*
46619549 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
46619591 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
46619633 AAATGGGC
1 AAATGGGC
46619641 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:46619699 original size:31 final size:31
Alignment explanation
Indices: 46619664--46619742 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
46619654 CGTTTACAAT
46619664 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46619695 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46619726 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
46619743 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46626201 original size:39 final size:40
Alignment explanation
Indices: 46626145--46626251 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
46626135 TGATGAAAAA
* * * *
46626145 TCGGCTATTTGTGGCACTTAGTGTGTGA-TCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAACT
* * *
46626184 TTGGCTATATATGGCACTTAGTGTGCGATTTGAGATAACT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAACT
*
46626224 TCGGCTATGTATGGCACTTAGTGTGCGA
1 TCGGCTATATATGGCACTTAGTGTGCGA
46626252 GATATCGAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 24 0.41
40 34 0.59
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.36
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAACT
Found at i:46626319 original size:28 final size:28
Alignment explanation
Indices: 46626232--46626308 Score: 118
Period size: 28 Copynumber: 2.8 Consensus size: 28
46626222 CTTCGGCTAT
46626232 GTATGGCACTTAGTGTGCGAGATATCGA
1 GTATGGCACTTAGTGTGCGAGATATCGA
* * *
46626260 ATGTGGCACTTAGTGTGTGAGATATCGA
1 GTATGGCACTTAGTGTGCGAGATATCGA
*
46626288 GTATGGCACTTAGTTTGCGAG
1 GTATGGCACTTAGTGTGCGAG
46626309 GCATTGAGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.31
Consensus pattern (28 bp):
GTATGGCACTTAGTGTGCGAGATATCGA
Found at i:46631262 original size:24 final size:25
Alignment explanation
Indices: 46631220--46631276 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
46631210 CAAGCTTTCT
46631220 TGGTTCTTTGTGAGATTCCCAA-TA
1 TGGTTCTTTGTGAGATTCCCAATTA
*
46631244 TGGTTCTTTGTGA-ACTTCCTAATTA
1 TGGTTCTTTGTGAGA-TTCCCAATTA
*
46631269 TGGCTCTT
1 TGGTTCTT
46631277 ATGAGCTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 1 0.03
24 19 0.66
25 9 0.31
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.46
Consensus pattern (25 bp):
TGGTTCTTTGTGAGATTCCCAATTA
Found at i:46639496 original size:23 final size:23
Alignment explanation
Indices: 46639470--46639519 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
46639460 ACCCCATGCA
46639470 ATGCAACATA-ATATCATACATGG-
1 ATGCAACATACATAT-A-ACATGGC
46639493 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
46639516 ATGC
1 ATGC
46639520 TCAAATACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:46639585 original size:27 final size:27
Alignment explanation
Indices: 46639555--46639659 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
46639545 AAAAAATCTA
*
46639555 TCATTTTACCATATCGGGGTATTACAG
1 TCATTTTACCATATCGGGGTATTTCAG
*
46639582 TCATTTTACCCA-A-CAAGGGTATTTCAG
1 TCATTTTA-CCATATC-GGGGTATTTCAG
* ** * *
46639609 TCATTCTACTTTATTGGGGTATTTCGG
1 TCATTTTACCATATCGGGGTATTTCAG
* **
46639636 TCATTTTACCCTATAAGGGTATTT
1 TCATTTTACCATATCGGGGTATTT
46639660 TGGTTATTTT
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 56 0.92
28 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (27 bp):
TCATTTTACCATATCGGGGTATTTCAG
Found at i:46639678 original size:27 final size:27
Alignment explanation
Indices: 46639571--46639682 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
46639561 TACCATATCG
* * * * *
46639571 GGGTATTACAGTCATTTTACCCAACAA
1 GGGTATTTCGGTCATTTTACACTATAA
* * ** **
46639598 GGGTATTTCAGTCATTCTACTTTATTG
1 GGGTATTTCGGTCATTTTACACTATAA
*
46639625 GGGTATTTCGGTCATTTTACCCTATAA
1 GGGTATTTCGGTCATTTTACACTATAA
* *
46639652 GGGTATTTTGGTTATTTTATCAC-ATAA
1 GGGTATTTCGGTCATTTTA-CACTATAA
46639679 GGGT
1 GGGT
46639683 TTAGGTACGC
Statistics
Matches: 67, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
27 65 0.97
28 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACACTATAA
Found at i:46659496 original size:40 final size:40
Alignment explanation
Indices: 46659452--46659528 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
46659442 TAGTGCCTCA
* *
46659452 TGTAGTCGAAGCTA-TTCCAACTCGCACACTTAGTGTCATT
1 TGTAGCCGAAGCTATTTCAAAC-CGCACACTTAGTGTCATT
46659492 TGTAGCCGAAGCTATTTCAAACCGCACACTTAGTGTC
1 TGTAGCCGAAGCTATTTCAAACCGCACACTTAGTGTC
46659529 GAACTTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 28 0.82
41 6 0.18
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (40 bp):
TGTAGCCGAAGCTATTTCAAACCGCACACTTAGTGTCATT
Found at i:46661987 original size:42 final size:42
Alignment explanation
Indices: 46661856--46662008 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 42
46661846 AATAAGATGA
* * ** *
46661856 CAATGCCATGTCCCAGATGTGGTTTTACATGGGATCTCACAT
1 CAATGCCATATCCCAGATGTGGTCTTACATGAAATCTCATAT
** * * * *
46661898 CGGTGCCA-ATCCCAGATATGGTCTTATACGAAATCTCATTT
1 CAATGCCATATCCCAGATGTGGTCTTACATGAAATCTCATAT
** * * *
46661939 TGATGCCATGTCCCAGACGTAGTCTTACATGAAATCTCATAT
1 CAATGCCATATCCCAGATGTGGTCTTACATGAAATCTCATAT
* *
46661981 CAATGCCATATCCCATATATGGTCTTAC
1 CAATGCCATATCCCAGATGTGGTCTTAC
46662009 TTGATAACAC
Statistics
Matches: 83, Mismatches: 27, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
41 30 0.36
42 53 0.64
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAGATGTGGTCTTACATGAAATCTCATAT
Found at i:46670606 original size:58 final size:58
Alignment explanation
Indices: 46670536--46670651 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
46670526 TTTCACGTTC
* *
46670536 TTCCTTTCCCAAATAGATGATCTATTGAGTAACCCTATAAAACAATTAATAAATCATA
1 TTCCTTTCCCAAATAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
46670594 TTCCTTTCCCAAATAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
1 TTCCTTTCCCAAATAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
46670652 CCTCCACTCG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (58 bp):
TTCCTTTCCCAAATAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
Found at i:46687349 original size:14 final size:14
Alignment explanation
Indices: 46687330--46687358 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46687320 TTAGACTTAG
46687330 TATTGTAAAAAGTA
1 TATTGTAAAAAGTA
46687344 TATTGTAAAAAGTA
1 TATTGTAAAAAGTA
46687358 T
1 T
46687359 TTTCATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (14 bp):
TATTGTAAAAAGTA
Found at i:46689877 original size:26 final size:26
Alignment explanation
Indices: 46689830--46689879 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
46689820 TTTATACTGA
**
46689830 TTACTGGCAGCTTTGCTGCGATACCG
1 TTACTGGCAGCTTTGCCACGATACCG
46689856 TTACTGGCAGCTTTGCCACGATAC
1 TTACTGGCAGCTTTGCCACGATAC
46689880 TGATTAGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.28, G:0.24, T:0.30
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCCACGATACCG
Found at i:46703468 original size:40 final size:40
Alignment explanation
Indices: 46703413--46703667 Score: 308
Period size: 40 Copynumber: 6.5 Consensus size: 40
46703403 GGATGATAAT
* * *
46703413 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-TATC
* *
46703453 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-TATC
*
46703493 CGGGCTAAGT-CCGAAGGCATTTGTGAGAGCT-ACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATATC
*
46703532 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
* *
46703572 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
* *
46703612 CGGGCTATGTCCCGAAGGCA-TTGAGCGAGT-AGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATATC
* *
46703651 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
46703668 TACTTGGCTT
Statistics
Matches: 198, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
38 15 0.08
39 49 0.25
40 134 0.68
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
Found at i:46703545 original size:79 final size:79
Alignment explanation
Indices: 46703413--46703667 Score: 306
Period size: 79 Copynumber: 3.2 Consensus size: 79
46703403 GGATGATAAT
* * *
46703413 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TACGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATTTG
*
46703477 CGCTAGTGACTAGT-TC
64 CGCGAGTGACTA-TATC
* *
46703493 CGGGCTAAGT-CCGAAGGCATTTGTGAGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGC
*
46703557 GCGAGTTACTATATC
65 GCGAGTGACTATATC
* * *
46703572 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGC
46703636 GCGAGT-AGCTATATC
65 GCGAGTGA-CTATATC
* *
46703651 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
46703668 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
78 17 0.11
79 83 0.53
80 56 0.36
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGCG
CGAGTGACTATATC
Found at i:46703648 original size:119 final size:119
Alignment explanation
Indices: 46703413--46703667 Score: 322
Period size: 119 Copynumber: 2.2 Consensus size: 119
46703403 GGATGATAAT
* *
46703413 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTACGGGCTAAGTCCCGAAGGCATTTGC
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTACGGGCTAAGTCCCGAAGGCATTGGC
* *
46703478 GCTAGTGACTAGTTCCGGGCTAAGTCCGAAGGCATTTGTGAGAGCTACTATATC
66 GCGAGTGACTAGTTCCGGGCTAAGTCCGAAGGCATTTGAGAGAGCTACTATATC
* * *
46703532 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTGG
1 CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGT-TACGGGCTAAGTCCCGAAGGCATTGG
* * * *
46703596 TGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATC
65 CGCGAGTGACTAGT-TCCGGGCTAAGT-CCGAAGGCATTTGAGAGAGCTA-CTATATC
* *
46703651 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
46703668 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
118 18 0.15
119 92 0.77
120 9 0.08
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (119 bp):
CGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTACGGGCTAAGTCCCGAAGGCATTGGC
GCGAGTGACTAGTTCCGGGCTAAGTCCGAAGGCATTTGAGAGAGCTACTATATC
Found at i:46735716 original size:39 final size:39
Alignment explanation
Indices: 46735612--46735829 Score: 176
Period size: 40 Copynumber: 5.5 Consensus size: 39
46735602 TTGAATGCTG
* * * *
46735612 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
46735650 ATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTATTAAT
1 -TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46735691 TCCGGGTTAAGTCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
46735730 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACT-AAT
**
46735770 TCCGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACT-AT
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* * *
46735808 AACCGGGCTATGTCCGAAGGCA
1 -TCCGGGTTAAGTCCGAAGGCA
46735830 CTTGAACGAG
Statistics
Matches: 148, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
38 10 0.07
39 64 0.43
40 65 0.44
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46735814 original size:79 final size:78
Alignment explanation
Indices: 46735612--46735829 Score: 219
Period size: 79 Copynumber: 2.8 Consensus size: 78
46735602 TTGAATGCTG
* * * * * *
46735612 TCCGGGCTAAGTCCC-AAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGT-ATGAGTTACTATATCCGGGCTAAG-TCCGAAGGCATTC
* *
46735676 GTGCTAGTTATTAAT
64 GTGCGAGTTATTAAA
** * *
46735691 TCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGATACTA-ATTCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTATGAGTTACTATA-TCCGGGCTAAGT-CCGAAGGCATT
46735754 CGTGCGAGTT-TTAAAA
63 CGTGCGAGTTATT-AAA
* * *
46735770 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAACCGGGCTATGTCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTATATCCGGGCTAAGTCCGAAGGCA
46735830 CTTGAACGAG
Statistics
Matches: 114, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
78 15 0.13
79 85 0.75
80 14 0.12
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTCGT
GCGAGTTATTAAA
Found at i:46738034 original size:27 final size:27
Alignment explanation
Indices: 46738004--46738057 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
46737994 AGGACCAAAA
* *
46738004 TACCTCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
46738031 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
46738058 GTGCTATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:46738226 original size:26 final size:26
Alignment explanation
Indices: 46738197--46738246 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
46738187 TTTATACTGA
*
46738197 TTACTGGCAGCTTTGCTGCGATACCG
1 TTACTAGCAGCTTTGCTGCGATACCG
46738223 TTACTAGCAGCTTTGCTGCGATAC
1 TTACTAGCAGCTTTGCTGCGATAC
46738247 TGATTAGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (26 bp):
TTACTAGCAGCTTTGCTGCGATACCG
Found at i:46740563 original size:12 final size:12
Alignment explanation
Indices: 46740546--46740570 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46740536 GTAGGTTTCC
46740546 AAAATGGAAATG
1 AAAATGGAAATG
46740558 AAAATGGAAATG
1 AAAATGGAAATG
46740570 A
1 A
46740571 TTCATTTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:46745338 original size:27 final size:27
Alignment explanation
Indices: 46745281--46745338 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
46745271 GCTCATCTTG
* ** **
46745281 GCTTGAATCCATTTTGTATCTTACATG
1 GCTTGAATCCATTCTACATCTTACAAA
*
46745308 GCTTGAATCCATTCTACATCTTGCAAA
1 GCTTGAATCCATTCTACATCTTACAAA
46745335 GCTT
1 GCTT
46745339 CTTCAATATG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (27 bp):
GCTTGAATCCATTCTACATCTTACAAA
Found at i:46745816 original size:68 final size:68
Alignment explanation
Indices: 46745725--46745851 Score: 193
Period size: 68 Copynumber: 1.9 Consensus size: 68
46745715 TGACAATTTG
** * *
46745725 CATATAAACACAACACGGACATTGTCACA-GCTCGCATATTTACACAGTCCACATATTGACATAG
1 CATATAAACACAACACACACATTGTCACATG-TCACATATTTACACAGTCCACACATTGACATAG
46745789 TATA
65 TATA
*
46745793 CATATAAACACAACACACACATTGTCACATGTCACATATTTACACGGTCCACACATTGA
1 CATATAAACACAACACACACATTGTCACATGTCACATATTTACACAGTCCACACATTGA
46745852 AACAGTTTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
68 52 0.98
69 1 0.02
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (68 bp):
CATATAAACACAACACACACATTGTCACATGTCACATATTTACACAGTCCACACATTGACATAGT
ATA
Found at i:46745871 original size:68 final size:68
Alignment explanation
Indices: 46745721--46745872 Score: 189
Period size: 68 Copynumber: 2.2 Consensus size: 68
46745711 GCAGTGACAA
** * * *
46745721 TTTGCATATAAACACAACACGGACATTGTCACAGCTCGCATATTTACACAGTCCACATATTGACA
1 TTTGCATATAAACACAACACACACATTGTCACAGCTCACATATTTACACAGTCCACACATTGAAA
*
46745786 TAG
66 CAG
* * *
46745789 TATACATATAAACACAACACACACATTGTCACATG-TCACATATTTACACGGTCCACACATTGAA
1 TTTGCATATAAACACAACACACACATTGTCACA-GCTCACATATTTACACAGTCCACACATTGAA
46745853 ACAG
65 ACAG
* *
46745857 TTTGTATATGAACACA
1 TTTGCATATAAACACA
46745873 GCTAGGATAT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
68 69 0.99
69 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.26
Consensus pattern (68 bp):
TTTGCATATAAACACAACACACACATTGTCACAGCTCACATATTTACACAGTCCACACATTGAAA
CAG
Found at i:46745917 original size:17 final size:17
Alignment explanation
Indices: 46745897--46745960 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 17
46745887 ACGGATCTCT
**
46745897 TATAAACACAGCTTTCA
1 TATAAACACAGCTAACA
* * *
46745914 TATAAACAAAGGTAGCA
1 TATAAACACAGCTAACA
*
46745931 TATAAACACAAC-ACACA
1 TATAAACACAGCTA-ACA
46745948 TATAAACACAGCT
1 TATAAACACAGCT
46745961 CGCACATTGT
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 1 0.03
17 35 0.97
ACGTcount: A:0.50, C:0.22, G:0.08, T:0.20
Consensus pattern (17 bp):
TATAAACACAGCTAACA
Found at i:46751729 original size:42 final size:42
Alignment explanation
Indices: 46751666--46751868 Score: 156
Period size: 42 Copynumber: 4.7 Consensus size: 42
46751656 TAAGATGCCA
* ** * **
46751666 ATGCCATGTCCCAGACGTGGTCTTATATGGGATCTCACATCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
* **
46751708 ATGCCATATCTCAGATATGGTCTTATACGAAATCTCATTTCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
* * * * *
46751750 ATGCCATGTCCCAGATGTGGTCTTACACGAAATCTCATATCA
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
* * * * * *
46751792 ACGCCATATCCCAAATACGGTCTTACATGATAA-CACATACCGATGCTG
1 ATGCCATATCCCAGATATGGTCTTATACGA-AATCTC--A-C-AT-C-G
46751840 ATGCCATATCCCAGATATGGTCTTATACG
1 ATGCCATATCCCAGATATGGTCTTATACG
46751869 GGATTTTTCA
Statistics
Matches: 125, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
42 95 0.76
43 2 0.02
44 1 0.01
46 2 0.02
47 1 0.01
48 24 0.19
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATCTCACATCG
Found at i:46751836 original size:84 final size:84
Alignment explanation
Indices: 46751666--46751837 Score: 184
Period size: 84 Copynumber: 2.0 Consensus size: 84
46751656 TAAGATGCCA
* * ** * * * * *
46751666 ATGCCATGTCCCAGACGTGGTCTTATATGGGATCTCACATCGATGCCATATCTCAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAAATACGGTCT
* * **
46751731 TATACGAAATCTCATTTCG
66 TACACGAAATCACATACCG
* *
46751750 ATGCCATGTCCCAGATGTGGTCTTACACGAAATCTCATATCAACGCCATATCCCAAATACGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAAATACGGTCT
*
46751815 TACATGATAA-CACATACCG
66 TACACGA-AATCACATACCG
46751834 ATGC
1 ATGC
46751838 TGATGCCATA
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
84 69 0.97
85 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAAATACGGTCT
TACACGAAATCACATACCG
Found at i:46784120 original size:40 final size:40
Alignment explanation
Indices: 46784027--46784282 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
46784017 AAGCCAAGTA
* * *
46784027 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
46784065 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
46784105 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46784145 CCTTCGGGACTTAGCCCGGATATAGTAGCTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
46784185 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * * *
46784225 CCTTCGGGACTTAGCCCGTA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
46784265 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
46784283 ATTATCATCC
Statistics
Matches: 200, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 170 0.85
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46791228 original size:28 final size:28
Alignment explanation
Indices: 46791165--46791262 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
46791155 ATATTAAGTC
*
46791165 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
46791192 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
46791220 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
46791249 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46791263 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46795776 original size:40 final size:40
Alignment explanation
Indices: 46795683--46795939 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
46795673 AAGCCAAGTA
* * *
46795683 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
46795721 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
46795761 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46795801 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46795841 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
46795881 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
46795921 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
46795940 TTATCATCCA
Statistics
Matches: 202, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 172 0.85
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46799347 original size:22 final size:21
Alignment explanation
Indices: 46799304--46799359 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
46799294 AATATACTGC
* *
46799304 CTAAAATAGTTTCAGTATATT
1 CTAACATAGTTTCAGTAAATT
46799325 CTAATCATAGTTTCAG-ACAATT
1 CTAA-CATAGTTTCAGTA-AATT
*
46799347 CTAACAGAGTTTC
1 CTAACATAGTTTC
46799360 GGAAACTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (21 bp):
CTAACATAGTTTCAGTAAATT
Found at i:46800175 original size:46 final size:48
Alignment explanation
Indices: 46800096--46800188 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 48
46800086 AGTTAGGGCT
* * *
46800096 TTAGCCCATCAGATATAGAATGCAGATAGAATATCAGAATCCTACCCC
1 TTAGCCCATCAGATATAGAATACAGACAAAATATCAGAATCCTACCCC
46800144 TTAGCCCATCA-A-ATAGAATACAGACAAAATATCAGAATCCTACCC
1 TTAGCCCATCAGATATAGAATACAGACAAAATATCAGAATCCTACCC
46800189 ACCAACCTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
46 30 0.71
47 1 0.02
48 11 0.26
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.22
Consensus pattern (48 bp):
TTAGCCCATCAGATATAGAATACAGACAAAATATCAGAATCCTACCCC
Found at i:46801768 original size:16 final size:17
Alignment explanation
Indices: 46801747--46801779 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46801737 TTGTGCTACT
46801747 AATTTAC-AAAAGTTGG
1 AATTTACGAAAAGTTGG
*
46801763 AATTTACGAAAATTTGG
1 AATTTACGAAAAGTTGG
46801780 GGCGTTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (17 bp):
AATTTACGAAAAGTTGG
Found at i:46803167 original size:16 final size:16
Alignment explanation
Indices: 46803122--46803167 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
46803112 GTGAAATTTA
*
46803122 AATATTTTATTGAAAT
1 AATATTTTATTTAAAT
*
46803138 AATATTTTAATTAAGAT
1 AATATTTTATTTAA-AT
46803155 AAT-TTTTATTTAA
1 AATATTTTATTTAA
46803168 TAAATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (16 bp):
AATATTTTATTTAAAT
Found at i:46805241 original size:7 final size:7
Alignment explanation
Indices: 46805229--46805254 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
46805219 GTCTTGCTTA
46805229 TTTATAT
1 TTTATAT
46805236 TTTATAT
1 TTTATAT
46805243 TTTATAT
1 TTTATAT
46805250 TTTAT
1 TTTAT
46805255 TATACATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATAT
Found at i:46806460 original size:32 final size:32
Alignment explanation
Indices: 46806424--46806487 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
46806414 AAGAATGTTT
*
46806424 ATAATTACTACTTCTCATCTATGGTAATGTAA
1 ATAATTACTACTTCTCATCTATAGTAATGTAA
46806456 ATAATTACTACTTCTCATCTATAGTAATGTAA
1 ATAATTACTACTTCTCATCTATAGTAATGTAA
46806488 GTCAATCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.41
Consensus pattern (32 bp):
ATAATTACTACTTCTCATCTATAGTAATGTAA
Found at i:46810451 original size:20 final size:20
Alignment explanation
Indices: 46810421--46810465 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
46810411 CTGTTTTATT
46810421 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
46810440 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
46810460 ATGGGC
1 ATGGGC
46810466 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:46810628 original size:62 final size:61
Alignment explanation
Indices: 46810486--46810630 Score: 161
Period size: 61 Copynumber: 2.4 Consensus size: 61
46810476 ATATCTCGAC
* * *
46810486 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* * * *
46810547 TTGTAATAGGGCTATGGCCCAGATTAATACTTATATGGGCTAAGGCCTAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
46810608 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
46810631 TAAAGCTTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 41 0.57
62 29 0.40
63 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:46813055 original size:14 final size:14
Alignment explanation
Indices: 46813036--46813066 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
46813026 TGAAATAAAA
46813036 AAAGGATCTTGAAT
1 AAAGGATCTTGAAT
46813050 AAAGGATCTTGAAT
1 AAAGGATCTTGAAT
46813064 AAA
1 AAA
46813067 TCTATTGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.26
Consensus pattern (14 bp):
AAAGGATCTTGAAT
Found at i:46815112 original size:27 final size:27
Alignment explanation
Indices: 46815072--46815212 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
46815062 AGGAAGCGTC
*
46815072 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
46815099 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
46815125 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
46815153 CTGGTTGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
46815180 CTAGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
46815207 CTGGTG
1 CTGGTG
46815213 ACTTCGTCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:46815151 original size:54 final size:54
Alignment explanation
Indices: 46815069--46815212 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
46815059 TGGAGGAAGC
46815069 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
46815123 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTTGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
46815177 GTTCTAGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
46815213 ACTTCGTCGC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:46818673 original size:18 final size:18
Alignment explanation
Indices: 46818650--46818685 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
46818640 TTCCTGGGTG
*
46818650 GTAGTCGATTATCAACTC
1 GTAGTCCATTATCAACTC
*
46818668 GTAGTCCTTTATCAACTC
1 GTAGTCCATTATCAACTC
46818686 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (18 bp):
GTAGTCCATTATCAACTC
Found at i:46823224 original size:28 final size:28
Alignment explanation
Indices: 46823191--46823247 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
46823181 ACGTTGATTG
46823191 AATTCACACTTCATACTTCATGTAAAAT
1 AATTCACACTTCATACTTCATGTAAAAT
46823219 AATTCACACTTCATACTTCATGTAAAAT
1 AATTCACACTTCATACTTCATGTAAAAT
46823247 A
1 A
46823248 CACAAATGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (28 bp):
AATTCACACTTCATACTTCATGTAAAAT
Found at i:46823670 original size:48 final size:48
Alignment explanation
Indices: 46823605--46823771 Score: 176
Period size: 48 Copynumber: 3.5 Consensus size: 48
46823595 CTATCAGTGT
** * *
46823605 CGATGTCATGTCCCAGACGGGTCTTAGACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGC
* * * ** *
46823654 CGATGCATGTCCCAGACATATTTTACACTAGC-TCT-CGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGC
* *
46823700 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCTAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGC
* * *
46823748 TGATGCATGTCCTAGAAATGTCTT
1 CGATGCATGTCCCAGACATGTCTT
46823772 CCAGTGGCTC
Statistics
Matches: 95, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
46 37 0.39
47 4 0.04
48 49 0.52
49 5 0.05
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGC
Found at i:46823730 original size:94 final size:96
Alignment explanation
Indices: 46823508--46823759 Score: 265
Period size: 94 Copynumber: 2.6 Consensus size: 96
46823498 CATCAAAGTT
* * * ** * * *
46823508 GATGCCATGTCTCAGATAGGTCTTACACTAACTTCCATATATCGAGGCCGATGTCGTGTCCTAAA
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG-CATGTCCCAAA
* * * *
46823573 CAGGTCTTACACTGGCTCTCATCTATCAGTGTC
65 CAGATCTTACACTAGCTCTCATC-ATCAATGCC
* * * *
46823606 GATGTCATGTCCCAGACGGGTCTTAGACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAAAC
* * *
46823671 ATATTTTACACTAGCTCTCGTC-TCAATGCC
66 AGATCTTACACTAGCTCTCATCATCAATGCC
* * * *
46823701 GATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCTAGACTGATGCATGTCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCC
46823760 TAGAAATGTC
Statistics
Matches: 129, Mismatches: 25, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
94 49 0.38
95 10 0.08
97 26 0.20
98 44 0.34
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (96 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAAAC
AGATCTTACACTAGCTCTCATCATCAATGCC
Found at i:46837374 original size:27 final size:26
Alignment explanation
Indices: 46837344--46837409 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
46837334 GTCAAAATTA
*
46837344 ACCTTAGGGGTATAACGGTCATTTTGC
1 ACCTTAGGGGTATAACGGTAATTTT-C
* * *
46837371 ACC-TAGAGGTAAAATGGTAATTTTC
1 ACCTTAGGGGTATAACGGTAATTTTC
*
46837396 ATACTTAGGGGTAT
1 A-CCTTAGGGGTAT
46837410 TTTAATAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
25 2 0.07
26 18 0.60
27 10 0.33
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
ACCTTAGGGGTATAACGGTAATTTTC
Found at i:46837668 original size:8 final size:8
Alignment explanation
Indices: 46837655--46837679 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46837645 TTCACAAATG
46837655 TCGGCTTT
1 TCGGCTTT
46837663 TCGGCTTT
1 TCGGCTTT
46837671 TCGGCTTT
1 TCGGCTTT
46837679 T
1 T
46837680 GCCGATCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:46838346 original size:79 final size:79
Alignment explanation
Indices: 46838215--46838374 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
46838205 GCTTTTTAAC
46838215 TGGTGAAGACGATGACGACTCGAGGCTGTAACCTTGGAATAATGCTGCCGACCGGTACCAAGGGT
1 TGGTGAAGACGATGACGACTCGAGGCTGTAACCTTGGAATAATGCTGCCGACCGGTACCAAGGGT
46838280 TTAGAGATAATGAA
66 TTAGAGATAATGAA
46838294 TGGTGAAGACGATGACGACTCGAGGCTGTAACCTTGGAATAATGCTGCCGACCGGTACCAAGGGT
1 TGGTGAAGACGATGACGACTCGAGGCTGTAACCTTGGAATAATGCTGCCGACCGGTACCAAGGGT
46838359 TTAGAGATAATGAA
66 TTAGAGATAATGAA
46838373 TG
1 TG
46838375 TTGATCAAGA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (79 bp):
TGGTGAAGACGATGACGACTCGAGGCTGTAACCTTGGAATAATGCTGCCGACCGGTACCAAGGGT
TTAGAGATAATGAA
Found at i:46839398 original size:27 final size:27
Alignment explanation
Indices: 46839368--46839421 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
46839358 CTAAACATAC
*
46839368 TAAATAATA-ATAATAATAATAATTTCA
1 TAAA-AATATATAATAATAAAAATTTCA
* *
46839395 TAAACATATCTAATAATAAAAATTTCA
1 TAAAAATATATAATAATAAAAATTTCA
46839422 AATACCAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.13
27 20 0.87
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (27 bp):
TAAAAATATATAATAATAAAAATTTCA
Found at i:46842215 original size:15 final size:14
Alignment explanation
Indices: 46842184--46842224 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
46842174 TTACTTTTGT
46842184 AATAAAA-ATT-T-
1 AATAAAATATTATA
46842195 AATAAAATATTTATA
1 AATAAAATA-TTATA
46842210 AATAAAATATTATA
1 AATAAAATATTATA
46842224 A
1 A
46842225 CTTTTGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 7 0.27
12 1 0.04
13 2 0.08
14 7 0.27
15 9 0.35
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AATAAAATATTATA
Found at i:46846788 original size:44 final size:43
Alignment explanation
Indices: 46846655--46846795 Score: 146
Period size: 44 Copynumber: 3.3 Consensus size: 43
46846645 ATCCAAAACG
* *
46846655 TGGTCTTACATGT-AATCAAATACCAATGCC-ACTGTTCCAGACA
1 TGGTCTTACACGTAAATCAAATA-CAATGCCAAC-GTCCCAGACA
* * * * *
46846698 AGGTCTTACATG-AAATCAAATACGATGCCAATGTCCTAGACA
1 TGGTCTTACACGTAAATCAAATACAATGCCAACGTCCCAGACA
*
46846740 TGGTCTTACACGTAAATCATAAGT-CAATGCCAACGTCCCAGACG
1 TGGTCTTACACGTAAATCA-AA-TACAATGCCAACGTCCCAGACA
46846784 TGGTCTTACACG
1 TGGTCTTACACG
46846796 ATAACACATA
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
42 24 0.29
43 27 0.33
44 30 0.37
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAAATACAATGCCAACGTCCCAGACA
Found at i:46854726 original size:44 final size:46
Alignment explanation
Indices: 46854663--46854830 Score: 164
Period size: 44 Copynumber: 3.7 Consensus size: 46
46854653 TATATGTGTT
* * * *
46854663 GATGCATGTCCCAGGCATGTCTTACACTAGCACA-A-CTCT-CAGTC
1 GATGCATGTCCTAGACATGTCTTACACTGGCACACATCTCTAC-GCC
*
46854707 GATGCATGTCCTAGACATGTCTTACACTGGCACTCATCTCTACGCC
1 GATGCATGTCCTAGACATGTCTTACACTGGCACACATCTCTACGCC
* * ** * *
46854753 AATGCCATGTCCTAGACATGGTCTTACACTGGCACTCAT-AATATGGCT
1 GATG-CATGTCCTAGACAT-GTCTTACACTGGCACACATCTCTA-CGCC
*
46854801 GATGCATGTCCCAGACATGTCTTACACTGG
1 GATGCATGTCCTAGACATGTCTTACACTGG
46854831 GACATAAGTA
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
44 30 0.28
45 1 0.01
46 21 0.20
47 30 0.28
48 24 0.23
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCTAGACATGTCTTACACTGGCACACATCTCTACGCC
Found at i:46854770 original size:47 final size:46
Alignment explanation
Indices: 46854708--46854830 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 46
46854698 CTCTCAGTCG
* *
46854708 ATGCATGTCCTAGACATGTCTTACACTGGCACTCAT-CTCTACGCCA
1 ATGCATGTCCTAGACATGTCTTACACTGGCACTCATAATAT-CGCCA
* **
46854754 ATGCCATGTCCTAGACATGGTCTTACACTGGCACTCATAATATGGCTG
1 ATG-CATGTCCTAGACAT-GTCTTACACTGGCACTCATAATATCGCCA
*
46854802 ATGCATGTCCCAGACATGTCTTACACTGG
1 ATGCATGTCCTAGACATGTCTTACACTGG
46854831 GACATAAGTA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
46 15 0.22
47 27 0.40
48 24 0.35
49 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCTAGACATGTCTTACACTGGCACTCATAATATCGCCA
Found at i:46855565 original size:12 final size:12
Alignment explanation
Indices: 46855548--46855572 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46855538 CAAAAATGTA
46855548 AAAATCATCAAG
1 AAAATCATCAAG
46855560 AAAATCATCAAG
1 AAAATCATCAAG
46855572 A
1 A
46855573 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:46860588 original size:22 final size:22
Alignment explanation
Indices: 46860560--46860605 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
46860550 TTTGAATGAA
*
46860560 CAAACTCCTAATACCAAGCATC
1 CAAACTCCGAATACCAAGCATC
46860582 CAAACTCCGAATACCAAGCATC
1 CAAACTCCGAATACCAAGCATC
46860604 CA
1 CA
46860606 TCATTCGGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.37, G:0.07, T:0.15
Consensus pattern (22 bp):
CAAACTCCGAATACCAAGCATC
Found at i:46862386 original size:47 final size:45
Alignment explanation
Indices: 46862178--46862495 Score: 245
Period size: 47 Copynumber: 6.8 Consensus size: 45
46862168 GGATAAGTTA
*
46862178 CCGATGTCATGTCCCAGATATGGTCTTACACTGGCTATCATCATCAAGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCATC-AGG
* * * * *
46862227 TCGATGCCATGTCCCTGACATGGTCTTATACTAGC-TC-TCGTATATACGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCATC--AT-CA-G-G
** *
46862277 TTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTC-TCA-G
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATC-A-TCATCAGG
* * *
46862321 CCGATGAATGTCCTAGACATGTCTTACACTGGCTATCATCGTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCATC-AGG
*
46862368 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATC-TCTACG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCATC-AGG
* *
46862414 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCA-TCATCATCA-GG
* *
46862462 CCGATGCATGCCCCAGACATGTCTTACAATGGCA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA
46862496 CATAAGTAAT
Statistics
Matches: 224, Mismatches: 26, Indels: 41
0.77 0.09 0.14
Matches are distributed among these distances:
44 31 0.14
45 4 0.02
46 27 0.12
47 68 0.30
48 42 0.19
49 44 0.20
50 6 0.03
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCAGG
Found at i:46862465 original size:141 final size:140
Alignment explanation
Indices: 46862186--46862494 Score: 329
Period size: 141 Copynumber: 2.2 Consensus size: 140
46862176 TACCGATGTC
* * *
46862186 ATGTCCCAGATATGGTCTTACACTGGCTATCATCATCAAGGTCGATGCCATGTCCCTGACATGGT
1 ATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCAAGGCCGATGCCATGTCCCAGACATGGT
* * * *** *
46862251 CTTATACTAGCTCTCGTATATACGTGTTGATGCATGTCCCAGACATGTCTTACACTAGCACAACT
65 CTTACACTAGCACTCATATATACG-GCCAATGCATGTCCCAGACATGTCTTACACTAGCACAAAT
*
46862316 CTCAGCCGATGA
129 ATCAGCCGATGA
* * *
46862328 ATGTCCTAGACATGTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAGACAT-GTC
1 ATGTCCCAGACATGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATGTCCCAGACATGGTC
* * * *
46862391 TTACACTGGCACTCATCTCTAC-GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT
66 TTACACTAGCACTCATATATACGGCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCA--CA-
* *
46862455 AATAT-GGCCGATGC
126 AATATCAGCCGATGA
* *
46862469 ATGCCCCAGACATGTCTTACAATGGC
1 ATGTCCCAGACATGTCTTACACTGGC
46862495 ACATAAGTAA
Statistics
Matches: 139, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
137 4 0.03
138 14 0.10
139 32 0.23
140 13 0.09
141 62 0.45
142 14 0.10
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (140 bp):
ATGTCCCAGACATGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATGTCCCAGACATGGTC
TTACACTAGCACTCATATATACGGCCAATGCATGTCCCAGACATGTCTTACACTAGCACAAATAT
CAGCCGATGA
Found at i:46862477 original size:94 final size:92
Alignment explanation
Indices: 46862178--46862495 Score: 304
Period size: 94 Copynumber: 3.4 Consensus size: 92
46862168 GGATAAGTTA
* * * * *
46862178 CCGATGTCATGTCCCAGATATGGTCTTACACTGGCTATCATCATCAAGGTCGATGCCATGTCCCT
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATC-TCTACGCCGATGCCATGTCCCA
* * * *
46862243 GACATGGTCTTATACTAGCTCTCGTATATACGTG
62 GACATGGTCTTACACTGGCACTCATA-ATA-G-G
** * * * *
46862277 TTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCT-CAGCCGATG-AATGTCCTAGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTAC-GCCGATGCCATGTCCCAGAC
**
46862339 AT-GTCTTACACTGGCTA-TCATCGTCGAGG
65 ATGGTCTTACACTGGC-ACTCATAAT--AGG
*
46862368 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACGCCAATGCCATGTCCCAGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTACGCCGATGCCATGTCCCAGAC
46862433 ATGGTCTTACACTGGCACTCATAATATGG
65 ATGGTCTTACACTGGCACTCATAATA-GG
* *
46862462 CCGATGCATGCCCCAGACATGTCTTACAATGGCA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA
46862496 CATAAGTAAT
Statistics
Matches: 180, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
91 33 0.18
92 15 0.08
93 25 0.14
94 56 0.31
95 21 0.12
96 1 0.01
97 12 0.07
98 13 0.07
99 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTACGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACTCATAATAGG
Found at i:46867252 original size:43 final size:43
Alignment explanation
Indices: 46867168--46867253 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
46867158 TATGTGATTC
* *
46867168 CGATATGTGTTTACGAGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT
46867211 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGAC-GTTGGCAT
1 CGATATGTGGTTACGA-GTAAGACC-CTGTCTAGGACAG-TGGCAT
46867254 TGTACCATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT
Found at i:46871224 original size:21 final size:21
Alignment explanation
Indices: 46871200--46871244 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
46871190 ATTATAGAAC
46871200 CAACTTCTAATAGTAGACCTA
1 CAACTTCTAATAGTAGACCTA
46871221 CAACTTCTAATAGTAGACCTA
1 CAACTTCTAATAGTAGACCTA
46871242 CAA
1 CAA
46871245 ACAATCAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (21 bp):
CAACTTCTAATAGTAGACCTA
Found at i:46876553 original size:23 final size:22
Alignment explanation
Indices: 46876527--46876586 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
46876517 TATGCATCAC
46876527 AGAATAAGCCACAAAGGCTTTAT
1 AGAA-AAGCCACAAAGGCTTTAT
*
46876550 AGAACACA-CTACAAAGGCTTTAT
1 AGAA-A-AGCCACAAAGGCTTTAT
46876573 AGAAAATGCCACAA
1 AGAAAA-GCCACAA
46876587 TGGATTTAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 1 0.03
23 28 0.90
24 1 0.03
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.18
Consensus pattern (22 bp):
AGAAAAGCCACAAAGGCTTTAT
Found at i:46880859 original size:22 final size:22
Alignment explanation
Indices: 46880834--46880877 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
46880824 AGCTAGTGTA
46880834 AGACCATGTCTGGGACATGCAT
1 AGACCATGTCTGGGACATGCAT
46880856 AGACCATGTCTGGGACATGCAT
1 AGACCATGTCTGGGACATGCAT
46880878 CGGCCTCCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (22 bp):
AGACCATGTCTGGGACATGCAT
Found at i:46888377 original size:47 final size:46
Alignment explanation
Indices: 46888265--46888486 Score: 155
Period size: 47 Copynumber: 4.7 Consensus size: 46
46888255 TGATTTGTGC
* * *
46888265 GCCAGTGTAAGACATGTCTGGGACGTGCTTCAGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* *
46888311 GCCAGTGTAAGACAATGTCTGGGACATGCATCGGCCTCGA-TAGTGATA
1 GCCAGTGTAAGAC-ATGTCTGGGACATGCATCGGCCAC-ATTA-TGAGA
* * * * * * *
46888359 GCCAGTGTAAGACGTGTCTGGGACACGCACCGGCTA-A--AAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGA
** * * * * *
46888403 GCTGGTGTAAGACATGTCTGGGACATGCGTCAGCACGCGTATATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CACAT-TATGAGA
* *
46888451 GCCAGTATTAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
46888487 AATATATTCC
Statistics
Matches: 131, Mismatches: 34, Indels: 18
0.72 0.19 0.10
Matches are distributed among these distances:
43 1 0.01
44 28 0.21
45 1 0.01
46 13 0.10
47 40 0.31
48 27 0.21
49 15 0.11
50 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:46893204 original size:27 final size:27
Alignment explanation
Indices: 46893166--46893285 Score: 186
Period size: 27 Copynumber: 4.4 Consensus size: 27
46893156 GTTGGGCTAG
*
46893166 AAGGTAAAATGACTATAATACCCTTGT
1 AAGGTAAAATGACTATAATACCCCTGT
*
46893193 AAGGTAAAATGACTATAATACCCCTAT
1 AAGGTAAAATGACTATAATACCCCTGT
* *
46893220 AGGGTCAAATGACTATAATACCCCTGT
1 AAGGTAAAATGACTATAATACCCCTGT
* *
46893247 AGGGTAAAATGACTGTAATACCCCTGT
1 AAGGTAAAATGACTATAATACCCCTGT
46893274 AAGGTAAAATGA
1 AAGGTAAAATGA
46893286 ATGATTTGCC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (27 bp):
AAGGTAAAATGACTATAATACCCCTGT
Found at i:46893697 original size:33 final size:34
Alignment explanation
Indices: 46893644--46893753 Score: 104
Period size: 33 Copynumber: 3.3 Consensus size: 34
46893634 CTGATTGCAT
* *
46893644 ACTG-TACTGATTTTGTAATGGGCTTAGGCCC-C
1 ACTGATACTGATTCTGAAATGGGCTTAGGCCCAC
*
46893676 ACTGATACTG-TTACTGAAATGGGCTCAGGCCCAC
1 ACTGATACTGATT-CTGAAATGGGCTTAGGCCCAC
* * *
46893710 ACTGTTTCTGATTCTGGAATGGGC-TAGGCCCTA-
1 ACTGATACTGATTCTGAAATGGGCTTAGGCCC-AC
*
46893743 ACTGAAACTGA
1 ACTGATACTGA
46893754 AAGGGCTTAG
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
32 6 0.10
33 35 0.56
34 20 0.32
35 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (34 bp):
ACTGATACTGATTCTGAAATGGGCTTAGGCCCAC
Found at i:46899770 original size:43 final size:42
Alignment explanation
Indices: 46899668--46899778 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
46899658 TAAGATTCTG
* *
46899668 TGTAAGACCATATCT-GGATTATGGAATTGATACGAGACTTCG
1 TGTAAGACCATATCTGGGA-TATGGCATTGATACGAGACTTCA
* * * *
46899710 TGAAAGACCACAGCTGGGCTATTGGCATTGATACGAGA-TTACA
1 TGTAAGACCATATCTGGGATA-TGGCATTGATACGAGACTT-CA
46899753 TGTAAGACCATATCTGGGATATGGCA
1 TGTAAGACCATATCTGGGATATGGCA
46899779 GTGGTACAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 21 0.38
43 35 0.62
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTCA
Found at i:46901867 original size:17 final size:18
Alignment explanation
Indices: 46901845--46901879 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
46901835 GGAATAGAAA
*
46901845 AAAATTAT-TAGGTTGGT
1 AAAATTATATAAGTTGGT
46901862 AAAATTATATAAGTTGGT
1 AAAATTATATAAGTTGGT
46901880 TTAAGGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (18 bp):
AAAATTATATAAGTTGGT
Found at i:46907876 original size:50 final size:50
Alignment explanation
Indices: 46907822--46908100 Score: 265
Period size: 50 Copynumber: 5.5 Consensus size: 50
46907812 CGGGTATGCA
* * *
46907822 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTCGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTCGTACACG
** *
46907872 TAGTAGCCTACACTTAGTACTATGCACGTGACCTAACCATC-CGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTCG-TACACG
* * * *** * *
46907922 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGCTATGGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAA-CAATCTCGTACACG
* * * * *
46907973 TAGTAGCCTGCACATAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTCGTACACG
* * * * *
46908023 TAGTAGCCTGCACTTTGTACTACACACGTGACCTAA-AACCGTCTTAAACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATC-TCGT--ACACG
* *
46908075 TAGTAGCCTATACATAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
46908101 TGTGTTCTCA
Statistics
Matches: 185, Mismatches: 38, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
49 5 0.03
50 116 0.63
51 37 0.20
52 27 0.15
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTAACAATCTCGTACACG
Found at i:46908009 original size:101 final size:101
Alignment explanation
Indices: 46907872--46908053 Score: 265
Period size: 101 Copynumber: 1.8 Consensus size: 101
46907862 CTCGTACACG
* ** * *
46907872 TAGTAGCCTACACTTAGTACTATGCACGTGACCTAACCATCCGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTACACATAGTACTACACACGCGACCTAACAATCCGATACACGTAGTAGCCTACACTT
46907937 AGTACTACACACGTGATCGAAGCTATGGGGTACGCA
66 AGTACTACACACGTGATCGAAGCTATGGGGTACGCA
* * * * *
46907973 TAGTAGCCTGCACATAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACATAGTACTACACACGCGACCTAACAATCCGATACACGTAGTAGCCTACACTT
*
46908038 TGTACTACACACGTGA
66 AGTACTACACACGTGA
46908054 CCTAAAACCG
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (101 bp):
TAGTAGCCTACACATAGTACTACACACGCGACCTAACAATCCGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGCTATGGGGTACGCA
Found at i:46922030 original size:12 final size:12
Alignment explanation
Indices: 46922013--46922037 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46922003 TGTTCTGGCC
46922013 CTATAATTGTTT
1 CTATAATTGTTT
46922025 CTATAATTGTTT
1 CTATAATTGTTT
46922037 C
1 C
46922038 GTTACTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (12 bp):
CTATAATTGTTT
Found at i:46923110 original size:40 final size:40
Alignment explanation
Indices: 46922915--46923177 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
46922905 TCCTCGTTCA
* * * * *
46922915 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
46922954 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46922994 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
46923034 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46923074 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
46923114 AAGGCCTTC--GATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46923153 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAACCCGGAT
46923178 AGCATTCAAT
Statistics
Matches: 197, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 57 0.29
40 136 0.69
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46930956 original size:40 final size:40
Alignment explanation
Indices: 46930858--46931120 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
46930848 TCCTCGTTCA
* * * * *
46930858 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
46930897 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46930937 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46930977 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46931017 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
46931057 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46931097 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46931121 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46933503 original size:27 final size:27
Alignment explanation
Indices: 46933473--46933564 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
46933463 ATTACCAAAG
* *
46933473 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTATTGTTT
* *
46933500 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTATTGTTT
**
46933527 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTATTGTTT
46933554 TACCCTCGATT
1 TACCCTCGATT
46933565 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATTGTTT
Found at i:46933586 original size:27 final size:27
Alignment explanation
Indices: 46933556--46933698 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 27
46933546 TATCATTTTA
* *
46933556 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
** * * *
46933583 CCCTAC-AGGGTAGAATTGCCAAAATAT
1 CCCT-CGATTGTAAAATTACCAAAATAC
* * *
46933610 CCCTAGTTTGTAAAATTACTAAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
* * * * * *
46933637 CACTGGTTTCTGAAATTACCGAAATA-
1 CCCTCGATTGTAAAATTACCAAAATAC
* *
46933663 CCCTCAATTTGTAAAATTACCAACATAC
1 CCCTCGA-TTGTAAAATTACCAAAATAC
46933691 CCCT-GATT
1 CCCTCGATT
46933699 TACAAAATTC
Statistics
Matches: 82, Mismatches: 30, Indels: 9
0.68 0.25 0.07
Matches are distributed among these distances:
26 5 0.06
27 72 0.88
28 5 0.06
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
CCCTCGATTGTAAAATTACCAAAATAC
Found at i:46933707 original size:54 final size:54
Alignment explanation
Indices: 46933616--46933720 Score: 124
Period size: 54 Copynumber: 1.9 Consensus size: 54
46933606 ATATCCCTAG
* * * *
46933616 TTTGTAAAATTACTAAAATACCACTGGTTTCTGAAATTACC-GAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTCTAAAATT-CCAGAAACACCCTCAA
* *
46933670 TTTGTAAAATTACCAACATACCCCTGATTTAC-AAAATTCCAGAAACACCCT
1 TTTGTAAAATTACCAAAATACCACTGATTT-CTAAAATTCCAGAAACACCCT
46933721 TGACTTTCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
53 2 0.05
54 40 0.93
55 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTCTAAAATTCCAGAAACACCCTCAA
Found at i:46933770 original size:27 final size:27
Alignment explanation
Indices: 46933731--46933782 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
46933721 TGACTTTCTA
46933731 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
46933758 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
46933783 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:46933900 original size:27 final size:27
Alignment explanation
Indices: 46933823--46933900 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
46933813 AAATGACTAA
*
46933823 AATACCCCTA-ATAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
46933850 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
46933877 AATACGCCTATATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
46933901 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:46934777 original size:25 final size:25
Alignment explanation
Indices: 46934711--46934769 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
46934701 AGGAAGTGCT
*
46934711 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACAG
46934736 AAAAGGGCTCTGCCCCAGTTTATCAG
1 AAAAGGGCTCTGCCCCAGTTTA-CAG
46934762 -AAAGGGCT
1 AAAAGGGCT
46934770 TTTCCCCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 30 0.94
26 2 0.06
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACAG
Found at i:46934987 original size:42 final size:42
Alignment explanation
Indices: 46934928--46935017 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
46934918 TAGTCTCCCC
* ** *
46934928 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
46934970 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
46935012 AAATGG
1 AAATGG
46935018 TCCTAAGGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:46942154 original size:27 final size:27
Alignment explanation
Indices: 46942089--46942157 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
46942079 GTAGACTAGT
* *
46942089 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATGCCCCTATAGGGTAGA
*
46942116 ATTACTGAAATGCTCCTATAGGGTAGA
1 ATTACTGAAATGCCCCTATAGGGTAGA
46942143 ATTACTGAAATGCCC
1 ATTACTGAAATGCCC
46942158 TTGGTTTACA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATGCCCCTATAGGGTAGA
Found at i:46942243 original size:27 final size:27
Alignment explanation
Indices: 46942150--46942483 Score: 169
Period size: 27 Copynumber: 12.4 Consensus size: 27
46942140 AGAATTACTG
* * **
46942150 AAATGCCCTTGGTTTACAAAATTACTG
1 AAATACCCTTGATTTACAAAATTACCA
* * *
46942177 AAATGCCCTTGGTTTACAAAATTA-CT
1 AAATACCCTTGATTTACAAAATTACCA
*
46942203 GAATACCCTTGATTTACAAAATTACCA
1 AAATACCCTTGATTTACAAAATTACCA
* *
46942230 AAATACCCTCGA-TTAGCAAAACTACCA
1 AAATACCCTTGATTTA-CAAAATTACCA
* * **
46942257 AAACACCCTAG-TTTGTAAAATTACCA
1 AAATACCCTTGATTTACAAAATTACCA
* * ***
46942283 AAATACCCCTGGTTTTTTAAATTACCA
1 AAATACCCTTGATTTACAAAATTACCA
* ** *
46942310 AAAGATCCC-TGATTTGGAAAATTACCG
1 AAATA-CCCTTGATTTACAAAATTACCA
* ** * *
46942337 GAATACCCTTGATTTGGAAAAATA-TA
1 AAATACCCTTGATTTACAAAATTACCA
46942363 GAAATACCCTTGACTTTTA-AAAATTA-CA
1 -AAATACCCTTGA--TTTACAAAATTACCA
* * ** *
46942391 GAAATACCATTGGTTTGTAAAATTACCG
1 -AAATACCCTTGATTTACAAAATTACCA
* * ** *
46942419 AAATACCATTGGTTTGTAAAATTACCG
1 AAATACCCTTGATTTACAAAATTACCA
* ** * *
46942446 AAATACCCTTGGTTTGTATATTTACCA
1 AAATACCCTTGATTTACAAAATTACCA
*
46942473 AAACACCCTTG
1 AAATACCCTTG
46942484 TAGGGTGAAA
Statistics
Matches: 253, Mismatches: 43, Indels: 22
0.80 0.14 0.07
Matches are distributed among these distances:
26 47 0.19
27 181 0.72
28 22 0.09
29 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTACCA
Found at i:46942250 original size:53 final size:52
Alignment explanation
Indices: 46942142--46942290 Score: 129
Period size: 53 Copynumber: 2.8 Consensus size: 52
46942132 TATAGGGTAG
* ** * * *
46942142 AATTACTGAAATGCCCTTGGTTTACAAAATTACTGAAATGCCCTTGGTTTACAA
1 AATTACTG-AATACCCTT-GTTTACAAAATTACCAAAATACCCTTCGATTACAA
46942196 AATTACTGAATACCCTTGATTTACAAAATTACCAAAATACCC-TCGATTAGCAA
1 AATTACTGAATACCCTTG-TTTACAAAATTACCAAAATACCCTTCGATTA-CAA
* ** * * **
46942249 AACTACCAAAACACCCTAGTTTGTAAAATTACCAAAATACCC
1 AATTA-CTGAATACCCTTGTTTACAAAATTACCAAAATACCC
46942291 CTGGTTTTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
52 6 0.08
53 56 0.71
54 17 0.22
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (52 bp):
AATTACTGAATACCCTTGTTTACAAAATTACCAAAATACCCTTCGATTACAA
Found at i:46942397 original size:55 final size:54
Alignment explanation
Indices: 46942322--46942461 Score: 156
Period size: 55 Copynumber: 2.6 Consensus size: 54
46942312 AGATCCCTGA
* * * * *
46942322 TTTGGAAAATTACCGGAATACCCTTGATTTGGAAAAATATAGAAATACCCTTGAC
1 TTTGTAAAATTACCGAAATACCCTTGGTTTGGAAAAATACAGAAATACCATTG-C
* * * * * *
46942377 TTT-TAAAAATTACAGAAATACCATTGGTTTGTAAAATTACCGAAATACCATTGG
1 TTTGT-AAAATTACCGAAATACCCTTGGTTTGGAAAAATACAGAAATACCATTGC
46942431 TTTGTAAAATTACCGAAATACCCTTGGTTTG
1 TTTGTAAAATTACCGAAATACCCTTGGTTTG
46942462 TATATTTACC
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
54 27 0.39
55 43 0.61
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACCGAAATACCCTTGGTTTGGAAAAATACAGAAATACCATTGC
Found at i:46942449 original size:54 final size:54
Alignment explanation
Indices: 46942142--46942483 Score: 242
Period size: 54 Copynumber: 6.4 Consensus size: 54
46942132 TATAGGGTAG
* * ** * * **
46942142 AATTACTGAAATGCCCTTGGTTTACAAAATTACTGAAATGCCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAA
* * ** * * * * *
46942196 AATTACTG-AATACCCTTGATTTACAAAATTACCAAAATACCCTCGATTAGCAA
1 AATTACCGAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAA
* * * * * * * *
46942249 AACTACCAAAACACCC-TAGTTTGTAAAATTACCAAAATACCCCTGGTTTTTTA
1 AATTACCGAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAA
* * * * * * *
46942302 AATTACCAAAAGATCCC-TGATTTGGAAAATTACCGGAATACCCTTGATTTGGAA
1 AATTACCGAAATA-CCCTTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAA
* ** * * *
46942356 AAATATAGAAATACCCTTGACTTT-TAAAAATTACAGAAATACCATTGGTTTGTAA
1 AATTACCGAAATACCCTTG-GTTTGT-AAAATTACCGAAATACCCTTGGTTTGTAA
* *
46942411 AATTACCGAAATACCATTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAT
1 AATTACCGAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAA
* * *
46942465 ATTTACCAAAACACCCTTG
1 AATTACCGAAATACCCTTG
46942484 TAGGGTGAAA
Statistics
Matches: 222, Mismatches: 60, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
53 81 0.36
54 98 0.44
55 43 0.19
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.31
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAA
Found at i:46942765 original size:41 final size:41
Alignment explanation
Indices: 46942720--46942841 Score: 172
Period size: 41 Copynumber: 3.0 Consensus size: 41
46942710 AGAGGAAGAA
*
46942720 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
46942761 ATTGAGGATCGAATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * * * *
46942802 ATTAAGGATTGCATGGTTTCTTGACGACCTTGGAACCACC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
46942842 AATGGCTTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:46943036 original size:22 final size:22
Alignment explanation
Indices: 46942984--46943048 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
46942974 GCCAATTATT
*
46942984 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
46943006 CT-ACATATGGCTCTGTGGCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
46943028 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
46943049 ATGTTTTTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:46943079 original size:27 final size:27
Alignment explanation
Indices: 46943041--46943102 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
46943031 ATTATGGTTG
*
46943041 TGTGCCAAATGTTTTTTCCTAAGGCTA
1 TGTGCCAAATGTATTTTCCTAAGGCTA
*
46943068 TGTGCCAAATGTATTTTCCTAAGGTTA
1 TGTGCCAAATGTATTTTCCTAAGGCTA
*
46943095 TGTACCAA
1 TGTGCCAA
46943103 TATATGATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
TGTGCCAAATGTATTTTCCTAAGGCTA
Found at i:46943322 original size:22 final size:22
Alignment explanation
Indices: 46943280--46943322 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
46943270 TGCTGCGATG
*
46943280 TTTACGACTATGTGCTGTCCTA
1 TTTACGACTATGTGCTATCCTA
46943302 TTTACGACTATGTGCTATCCT
1 TTTACGACTATGTGCTATCCT
46943323 GTCTATGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (22 bp):
TTTACGACTATGTGCTATCCTA
Found at i:46944147 original size:34 final size:34
Alignment explanation
Indices: 46944094--46944173 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 34
46944084 GTTATAAGTC
* * ** *
46944094 CAGTATCAGTGAGGACCTTAGCCCATAGCAGTAA
1 CAGTATCAATGTGGACCTTAAACCATAACAGTAA
* *
46944128 CAGTATCAATGTGGGCCTTAAACCATAATAGTAA
1 CAGTATCAATGTGGACCTTAAACCATAACAGTAA
46944162 CAGTATCAATGT
1 CAGTATCAATGT
46944174 CCAATAGAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (34 bp):
CAGTATCAATGTGGACCTTAAACCATAACAGTAA
Found at i:46948643 original size:30 final size:30
Alignment explanation
Indices: 46948604--46948665 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
46948594 TACATGAAAT
46948604 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TAT-TTGAA
46948635 ACAT-GAAATGGATGATACATGTATTTGAA
1 ACATGGAAATGGATGATACATGTATTTGAA
46948664 AC
1 AC
46948666 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 7 0.24
30 8 0.28
31 13 0.45
32 1 0.03
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.31
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATTTGAA
Found at i:46951196 original size:48 final size:48
Alignment explanation
Indices: 46951133--46951262 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
46951123 GTACACTAAC
* * * *
46951133 TGCCAATGTCATGGCCCGAAGCCAACTCAAT-ATATCTCACACCCAAAG
1 TGCCAATATCATGGCCTGAAGCCAAATCAATGA-AGCTCACACCCAAAG
* *
46951181 TGCTAATATCATGGCCTGAAGCCAAATCAATGAAGCTCTCACCCAAAG
1 TGCCAATATCATGGCCTGAAGCCAAATCAATGAAGCTCACACCCAAAG
* * *
46951229 TTCCAATATCATGGCCTAAAGCCAAATAAATGAA
1 TGCCAATATCATGGCCTGAAGCCAAATCAATGAA
46951263 TCCCCTAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 70 0.99
49 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.15, T:0.21
Consensus pattern (48 bp):
TGCCAATATCATGGCCTGAAGCCAAATCAATGAAGCTCACACCCAAAG
Found at i:46953180 original size:15 final size:15
Alignment explanation
Indices: 46953160--46953189 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46953150 TTACTTAGTC
46953160 AAACATCTTACCGAG
1 AAACATCTTACCGAG
46953175 AAACATCTTACCGAG
1 AAACATCTTACCGAG
46953190 GTCTATACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (15 bp):
AAACATCTTACCGAG
Found at i:46953972 original size:22 final size:22
Alignment explanation
Indices: 46953944--46953988 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
46953934 TATTTAACCC
46953944 AAATTAAATTGGATTA-AAATTA
1 AAATT-AATTGGATTATAAATTA
*
46953966 AAATTAATTGTATTATAAATTA
1 AAATTAATTGGATTATAAATTA
46953988 A
1 A
46953989 TACACATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (22 bp):
AAATTAATTGGATTATAAATTA
Done.