Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 150 of 259
Found at i:49114487 original size:27 final size:27
Alignment explanation
Indices: 49114457--49114513 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
49114447 CATATTTAAG
*
49114457 TATTAATATATAATATATAATATATTA
1 TATTAATATATAATATATAATATAATA
* *
49114484 TATTATTATATTATATATAATATAATA
1 TATTAATATATAATATATAATATAATA
49114511 TAT
1 TAT
49114514 AAAACATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TATTAATATATAATATATAATATAATA
Found at i:49114515 original size:7 final size:7
Alignment explanation
Indices: 49114460--49114515 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
49114450 ATTTAAGTAT
49114460 TAATATA
1 TAATATA
49114467 TAATATA
1 TAATATA
49114474 TAATATA
1 TAATATA
*
49114481 TTATAT-
1 TAATATA
*
49114487 TATTATA
1 TAATATA
*
49114494 TTATATA
1 TAATATA
49114501 T-A-ATA
1 TAATATA
49114506 TAATATA
1 TAATATA
49114513 TAA
1 TAA
49114516 AACATAAAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 6 0.15
7 31 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TAATATA
Found at i:49115731 original size:22 final size:22
Alignment explanation
Indices: 49115691--49115758 Score: 93
Period size: 22 Copynumber: 3.0 Consensus size: 22
49115681 CATTCTATTA
*
49115691 TTAGCACGTTAAGTGCTCTCTGT
1 TTAGCAC-TTTAGTGCTCTCTGT
49115714 TTAGCACATTT-GTGCTCTCTGT
1 TTAGCAC-TTTAGTGCTCTCTGT
*
49115736 ATAGCACTTTAGTGCTCTCTGT
1 TTAGCACTTTAGTGCTCTCTGT
49115758 T
1 T
49115759 CGTTTGTGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
21 3 0.08
22 28 0.70
23 9 0.22
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (22 bp):
TTAGCACTTTAGTGCTCTCTGT
Found at i:49122685 original size:43 final size:43
Alignment explanation
Indices: 49122562--49122675 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 43
49122552 CATTAGGATT
* * *
49122562 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGATAGTGGC
** * * * *
49122605 ATCTTTATATGATTTCGTGTAAGACCCTGTCTGGGATAGTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGATAGTGGC
*
49122648 ATCGATATGTGATAACATGTAAGACCAT
1 ATCGATATGTGATTACATGTAAGACCAT
49122676 ATTAGGGATA
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGATAGTGGC
Found at i:49135387 original size:18 final size:18
Alignment explanation
Indices: 49135364--49135400 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
49135354 ATCCTGGGAT
49135364 ATCAAAAAAAGAATTAAG
1 ATCAAAAAAAGAATTAAG
49135382 ATCAAAAAAAGAATTAAG
1 ATCAAAAAAAGAATTAAG
49135400 A
1 A
49135401 ACACATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (18 bp):
ATCAAAAAAAGAATTAAG
Found at i:49136287 original size:19 final size:19
Alignment explanation
Indices: 49136263--49136303 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
49136253 CCGAATGGAT
49136263 ATATTTTTAGCTATAATAG
1 ATATTTTTAGCTATAATAG
49136282 ATATTTTTAGCTATAATAG
1 ATATTTTTAGCTATAATAG
49136301 ATA
1 ATA
49136304 CTCACTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
ATATTTTTAGCTATAATAG
Found at i:49142316 original size:20 final size:18
Alignment explanation
Indices: 49142291--49142327 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
49142281 ATTGCTAAGT
49142291 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
49142311 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
49142328 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:49154242 original size:15 final size:16
Alignment explanation
Indices: 49154222--49154251 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49154212 TGGTGCCTTG
49154222 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
49154237 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
49154252 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:49155236 original size:103 final size:103
Alignment explanation
Indices: 49155054--49155239 Score: 309
Period size: 103 Copynumber: 1.8 Consensus size: 103
49155044 TATTACACAG
* * * * *
49155054 CCTAGCACATGGCTTAGCACGCAACCTGGCACATGGGCGTGTGGCTTGGACGTGTGACCCAAGTC
1 CCTAGCACATAGCCTAGCACACAACCTGGCACACGGGCGTGTGGCTTGGACGTGTAACCCAAGTC
49155119 AGTGAGTTACACGGGCACCGACATGGGCTGGGACATCA
66 AGTGAGTTACACGGGCACCGACATGGGCTGGGACATCA
*
49155157 CCTAGCACATAGCCTAGCACACAACCTGGCACACGGGCGTGTGGCTTGGCCGTGTAACCCAAGTC
1 CCTAGCACATAGCCTAGCACACAACCTGGCACACGGGCGTGTGGCTTGGACGTGTAACCCAAGTC
*
49155222 AGTGAGTTATACGGGCAC
66 AGTGAGTTACACGGGCAC
49155240 GAAATTTTCT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 76 1.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.18
Consensus pattern (103 bp):
CCTAGCACATAGCCTAGCACACAACCTGGCACACGGGCGTGTGGCTTGGACGTGTAACCCAAGTC
AGTGAGTTACACGGGCACCGACATGGGCTGGGACATCA
Found at i:49160704 original size:28 final size:28
Alignment explanation
Indices: 49160665--49160729 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
49160655 AGTAGCACCT
49160665 AGAA-AAAAACAACAAAATTAAGAATCA
1 AGAAGAAAAACAACAAAATTAAGAATCA
49160692 AGAAGAAAAACAACAAAATTAAGAATCA
1 AGAAGAAAAACAACAAAATTAAGAATCA
*
49160720 AGGAGAAAAA
1 AGAAGAAAAA
49160730 TTAATGGCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 4 0.11
28 32 0.89
ACGTcount: A:0.69, C:0.09, G:0.12, T:0.09
Consensus pattern (28 bp):
AGAAGAAAAACAACAAAATTAAGAATCA
Found at i:49166186 original size:19 final size:21
Alignment explanation
Indices: 49166148--49166186 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
49166138 ATATGGTACG
49166148 TTTGTCTTTAGGCAAATGCAT
1 TTTGTCTTTAGGCAAATGCAT
*
49166169 TTTGT-TTTATGC-AATGCA
1 TTTGTCTTTAGGCAAATGCA
49166187 CCTGCAACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 6 0.35
21 5 0.29
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (21 bp):
TTTGTCTTTAGGCAAATGCAT
Found at i:49171361 original size:40 final size:40
Alignment explanation
Indices: 49171287--49171506 Score: 277
Period size: 40 Copynumber: 5.5 Consensus size: 40
49171277 AACCCAAGTA
* * *
49171287 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
49171326 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
49171366 CCTTCGGGACTTAGCCCGAATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
49171406 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAACTA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
49171446 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49171485 CCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATA
49171507 ACATCCGAAT
Statistics
Matches: 157, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 36 0.23
40 119 0.76
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49171419 original size:80 final size:80
Alignment explanation
Indices: 49171286--49171506 Score: 306
Period size: 80 Copynumber: 2.8 Consensus size: 80
49171276 AAACCCAAGT
* * *
49171286 ACCTTCGGGATTTAG-CTGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 ACCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
49171350 GTCACTAGCACAA-A
66 GTCAATAGCACAACA
* *
49171364 AGCCTTCGGGACTTAGCCCGAATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATAT
1 A-CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
49171429 AGTCAATAGCACAACT
65 AGTCAATAGCACAACA
* * *
49171445 ACCTTCGGGACTTAGCCCGGATATGGTC-ACTAGCAC-CATGCCTTCGGGACTTAGCCCGGATA
1 ACCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
49171507 ACATCCGAAT
Statistics
Matches: 127, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 37 0.29
80 87 0.69
81 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (80 bp):
ACCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCAATAGCACAACA
Found at i:49179268 original size:78 final size:80
Alignment explanation
Indices: 49179138--49179317 Score: 276
Period size: 78 Copynumber: 2.3 Consensus size: 80
49179128 AACCCAAGTA
* * * *
49179138 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAACAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
49179202 TC-ACAGCACAAAAG
66 TCAACAGCACAAAAG
49179216 -CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAACAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
* **
49179280 TCAATAGCACAACTG
66 TCAACAGCACAAAAG
49179295 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49179318 GGTCACTAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
77 12 0.13
78 49 0.53
79 9 0.10
80 22 0.24
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
TCAACAGCACAAAAG
Found at i:49179270 original size:40 final size:41
Alignment explanation
Indices: 49179138--49179359 Score: 257
Period size: 40 Copynumber: 5.6 Consensus size: 41
49179128 AACCCAAGTA
* * *
49179138 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAACG
* *
49179177 CCTTCGGGTCTTAGCCCGGATATAGTC-AC-AGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAACG
* *
49179216 -CTTCGGGACTTAGCCCGGATATA-ACAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAACG
49179255 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCAC-AACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAAC-G
* * *
49179295 CCTTCGGGACTTAGCCCGGATATGGTC-ACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAACG
* *
49179334 CCTTCGGGACTTAGCCGGGACATAGT
1 CCTTCGGGACTTAGCCCGGATATAGT
49179360 TGTATCATTT
Statistics
Matches: 159, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
37 1 0.01
38 24 0.15
39 56 0.35
40 74 0.47
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAACG
Found at i:49188879 original size:20 final size:20
Alignment explanation
Indices: 49188854--49188898 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
49188844 TAACACAGGT
* *
49188854 GTGGGCTTACATATACGGGC
1 GTGGGCCTACATACACGGGC
49188874 GTGGGCCTACATACACGGGC
1 GTGGGCCTACATACACGGGC
*
49188894 ATGGG
1 GTGGG
49188899 AGAAGTGAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.22, G:0.38, T:0.20
Consensus pattern (20 bp):
GTGGGCCTACATACACGGGC
Found at i:49192488 original size:47 final size:47
Alignment explanation
Indices: 49192427--49192821 Score: 637
Period size: 47 Copynumber: 8.4 Consensus size: 47
49192417 CAGCCAAGAC
49192427 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* **
49192474 AGTGTATATGTGTGATAAGGCCTAATGGCCGACATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
49192521 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
49192568 AGTGTATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
49192615 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
49192662 AGTGTATATATGTAATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
49192709 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
49192756 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
49192803 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
49192822 TCCCGAAGGG
Statistics
Matches: 322, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 322 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:49192996 original size:37 final size:37
Alignment explanation
Indices: 49192940--49193018 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
49192930 CCGAGCTCTA
* *
49192940 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
49192977 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49193014 AAGAC
1 AAGAC
49193019 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49198053 original size:43 final size:43
Alignment explanation
Indices: 49197989--49198075 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
49197979 AAAAGTTAAA
*
49197989 TTCCATGTTCTGAGAAAAAGCTCTATTGTACGTAATTAATGAC
1 TTCCATATTCTGAGAAAAAGCTCTATTGTACGTAATTAATGAC
* * *
49198032 TTCCATATTCTGAGAACAAGCTCTGTTGTACGTAATTGATGAC
1 TTCCATATTCTGAGAAAAAGCTCTATTGTACGTAATTAATGAC
49198075 T
1 T
49198076 AGTCATTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (43 bp):
TTCCATATTCTGAGAAAAAGCTCTATTGTACGTAATTAATGAC
Found at i:49200806 original size:23 final size:23
Alignment explanation
Indices: 49200780--49200837 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
49200770 ATCGCAGTGT
*
49200780 AGCTGCTAATAGTAACGCT-TCAA
1 AGCTGCTAATAGTAACG-TAACAA
* *
49200803 AGCTACTAATAGTAATGTAACAA
1 AGCTGCTAATAGTAACGTAACAA
49200826 AGCTGCTAATAG
1 AGCTGCTAATAG
49200838 CGGCAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 1 0.03
23 29 0.97
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGTAACAA
Found at i:49204462 original size:21 final size:21
Alignment explanation
Indices: 49204436--49204481 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
49204426 ATATAGATCA
*
49204436 AGATAAATAATTATTGAAATT
1 AGATAAATAATTACTGAAATT
*
49204457 AGATAAATGATTACTGAAATT
1 AGATAAATAATTACTGAAATT
49204478 AGAT
1 AGAT
49204482 CGGGGAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (21 bp):
AGATAAATAATTACTGAAATT
Found at i:49204827 original size:22 final size:24
Alignment explanation
Indices: 49204769--49204877 Score: 93
Period size: 24 Copynumber: 4.7 Consensus size: 24
49204759 CTTATTATTA
* * *
49204769 CAGCTCATTGGAGCTTACCA-ATT
1 CAGCTCAATAGAGCTTACCATGTT
*
49204792 -AGCTCGAA-AAAGCTTA-C-TGTT
1 CAGCTC-AATAGAGCTTACCATGTT
*
49204813 CAGCTCAATAGAGCTTACCATTTT
1 CAGCTCAATAGAGCTTACCATGTT
* * *
49204837 TAGCTTAATAGAGCTTACCATTTT
1 CAGCTCAATAGAGCTTACCATGTT
*
49204861 CAGCTCAAAAGAGCTTA
1 CAGCTCAATAGAGCTTA
49204878 TTGTTTATTA
Statistics
Matches: 69, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
21 5 0.07
22 23 0.33
23 2 0.03
24 39 0.57
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (24 bp):
CAGCTCAATAGAGCTTACCATGTT
Found at i:49204846 original size:24 final size:24
Alignment explanation
Indices: 49204811--49204877 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
49204801 AAGCTTACTG
49204811 TTCAGCTCAATAGAGCTTACCATT
1 TTCAGCTCAATAGAGCTTACCATT
* *
49204835 TTTAGCTTAATAGAGCTTACCATT
1 TTCAGCTCAATAGAGCTTACCATT
*
49204859 TTCAGCTCAAAAGAGCTTA
1 TTCAGCTCAATAGAGCTTA
49204878 TTGTTTATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (24 bp):
TTCAGCTCAATAGAGCTTACCATT
Found at i:49207235 original size:48 final size:48
Alignment explanation
Indices: 49207163--49207481 Score: 377
Period size: 48 Copynumber: 6.6 Consensus size: 48
49207153 GGTAAATGGT
* * * * * *
49207163 CGATGCAATGTCCCAGACATGGTCTTACTCTGGCTTTCATAACATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* *
49207211 TGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * * * * *
49207259 CGATGCAATGTTCTAAACATGGTCTTACACTAGCTCTGATAAAATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * * * **
49207307 CGATGCCATGTTCCAAACACGGCCTTACATTGGCTCACATAACATCAC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
*
49207355 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTGTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
** *
49207403 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * * * *
49207451 TGATGTCATGTCCCAGACGTGGTCTTACACT
1 CGATGCCATGTTCCAAACATGGTCTTACACT
49207482 AGCATACATA
Statistics
Matches: 228, Mismatches: 43, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 228 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
Found at i:49211873 original size:47 final size:47
Alignment explanation
Indices: 49211784--49211931 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 47
49211774 TTAGGATTTT
* ** *
49211784 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGTATATATGAGATAAAGCCGAATGGCCA
* * * * *
49211831 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATATGAACATGTATATATGAGATAAAGCCGAATGGCCA
* * * * *
49211878 ATGCGA--AATATGAATGA-GATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATATGAA-CATG-TA--TATATGAGATAAAGCCGAATGGCCA
49211926 ATGTGA
1 ATGTGA
49211932 AATATGTATG
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
45 9 0.11
46 3 0.04
47 42 0.51
48 29 0.35
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGTATATATGAGATAAAGCCGAATGGCCA
Found at i:49212015 original size:98 final size:96
Alignment explanation
Indices: 49211854--49212037 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
49211844 GAACATGTAT
*
49211854 ATATGTGGTAAAGCTGAATGGCTAATGCGAAATATGAATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGAATGAGATATGTATATGTGGTAAAGCCGA
49211919 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
49211950 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGCGAAATAT-GA-ATGAGATATGTATATGTGGTAAAGC
*
49212014 CGAATGGCTACTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
49212038 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 31 0.38
97 1 0.01
98 48 0.59
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGAATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:49212053 original size:50 final size:48
Alignment explanation
Indices: 49211853--49212037 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
49211843 TGAACATGTA
* * *
49211853 TATATGTGGTAAAGCTGAATGGCTAATGCGAAATATGAATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
49211901 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
49211949 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
49211999 TATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49212038 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:49212286 original size:37 final size:37
Alignment explanation
Indices: 49212184--49212298 Score: 158
Period size: 37 Copynumber: 3.1 Consensus size: 37
49212174 GGAAATATAT
* * *
49212184 TCTGGGTAAGACCCAATGACTACGTGTGAAGATTATG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
49212221 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
49212258 TCTGGGTAAGACCCGATAACTTCATGTGGAGATTTCG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
49212295 TCTG
1 TCTG
49212299 AGCTAAAGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:49213843 original size:40 final size:40
Alignment explanation
Indices: 49213560--49213831 Score: 382
Period size: 40 Copynumber: 6.8 Consensus size: 40
49213550 GAGAATTGAG
*
49213560 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
49213600 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
49213640 AGTGATGTATTCGGGCTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
49213680 AGTGATATATCTGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
49213720 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
49213760 AGTGATATACCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49213800 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
49213832 ATCATGCTGG
Statistics
Matches: 200, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 200 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:49218074 original size:47 final size:47
Alignment explanation
Indices: 49217985--49218081 Score: 113
Period size: 47 Copynumber: 2.1 Consensus size: 47
49217975 TTAGGATTTT
* ** *
49217985 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGTATATATGAGATAAAGCCGAATGGCCA
* * * * *
49218032 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATATGAACATGTATATATGAGATAAAGCCGAATGGCCA
49218079 ATG
1 ATG
49218082 CGAAATATGC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGTATATATGAGATAAAGCCGAATGGCCA
Found at i:49218219 original size:98 final size:96
Alignment explanation
Indices: 49218055--49218238 Score: 271
Period size: 98 Copynumber: 1.9 Consensus size: 96
49218045 GAACATGTAT
* * *
49218055 ATATGTGGTAAAGCTGAATGGCTAATGCGAAATATGCATGAGATATGTACATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATACATGAGATATGTACATGTGGTAAAGACGA
49218120 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* * *
49218151 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGA
1 ATATGTGGTAAAGCCGAATGGCT-AATGCG-AA-ATATACATGAGATATGTACATGTGGTAAAGA
*
49218215 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
49218239 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.32
97 2 0.03
98 50 0.64
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATACATGAGATATGTACATGTGGTAAAGACGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:49218254 original size:50 final size:48
Alignment explanation
Indices: 49218054--49218238 Score: 264
Period size: 48 Copynumber: 3.8 Consensus size: 48
49218044 TGAACATGTA
* * *
49218054 TATATGTGGTAAAGCTGAATGGCTAATGCGAAATATGCATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
49218102 TACATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
49218150 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
49218200 TATATGTGGTAAAGACGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49218239 GGCGATGTGC
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
47 1 0.01
48 76 0.62
49 4 0.03
50 40 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:49218435 original size:37 final size:37
Alignment explanation
Indices: 49218385--49218492 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
49218375 GGAAATATAT
49218385 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49218422 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49218459 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
49218493 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49223595 original size:31 final size:31
Alignment explanation
Indices: 49223557--49223620 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
49223547 CCTTTTCATA
49223557 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
49223588 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
49223619 TT
1 TT
49223621 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:49223888 original size:23 final size:23
Alignment explanation
Indices: 49223813--49223952 Score: 165
Period size: 23 Copynumber: 6.0 Consensus size: 23
49223803 GCTTTATCAT
*
49223813 ATAACTGGAGGCCTAA-CCTCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTT-A
* *
49223838 ATAACCGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
49223862 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
* *
49223885 ATAACAGGTGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
49223908 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
* * *
49223931 ATAACTGTGGCGTAAACCCTTT
1 ATAACTGGGGCATAAGCCCTTT
49223953 TTCACTTCCT
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
23 65 0.64
24 24 0.24
25 12 0.12
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:49224028 original size:20 final size:20
Alignment explanation
Indices: 49224003--49224069 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
49223993 TTATGATTAC
49224003 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
49224023 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
49224043 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
49224063 ACCATGT
1 ATCATGT
49224070 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:49224034 original size:11 final size:11
Alignment explanation
Indices: 49224003--49224058 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
49223993 TTATGATTAC
49224003 ATCATGTGCAT
1 ATCATGTGCAT
*
49224014 ATCA--TACAT
1 ATCATGTGCAT
49224023 ATCATGTGCAT
1 ATCATGTGCAT
*
49224034 ATCA--TACAT
1 ATCATGTGCAT
*
49224043 GTCATGTGCAT
1 ATCATGTGCAT
49224054 ATCAT
1 ATCAT
49224059 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:49227865 original size:93 final size:93
Alignment explanation
Indices: 49227704--49227875 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
49227694 CGCCCAAAAG
* *
49227704 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
49227769 ACGAGTTTGGATGCCTAGTTATATCTCA
66 ACGAGTTCGGATGCCTAGTTATATCTCA
* * *
49227797 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
49227862 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
49227876 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTATATCTCA
Found at i:49227872 original size:46 final size:46
Alignment explanation
Indices: 49227705--49227872 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
49227695 GCCCAAAAGC
* * * *
49227705 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
* * ** * *
49227751 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTATAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAGT
49227798 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
*
49227844 GAACTCGGACTCAACTGAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
49227873 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 54 0.55
47 28 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
Found at i:49230293 original size:15 final size:15
Alignment explanation
Indices: 49230264--49230313 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
49230254 CAAAGATAAC
*
49230264 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49230278 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
49230293 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
49230308 AAGAAA
1 AAGAAA
49230314 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49230322 original size:15 final size:15
Alignment explanation
Indices: 49230275--49230322 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
49230265 AGAAAACCGA
49230275 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
49230289 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
49230305 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49230320 ATA
1 ATA
49230323 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49233327 original size:46 final size:45
Alignment explanation
Indices: 49233252--49233423 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
49233242 TGTAACCCGC
* * *
49233252 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-ACAT
* *
49233298 CCATGAGTGAACTCGGACACAACTCAACGAGTTCGGATGCCTAGTTAC-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTACAT
* * * * *
49233347 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTACAT
49233390 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
49233424 AGATGCTCAA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 4 0.04
43 2 0.02
44 1 0.01
45 2 0.02
46 84 0.81
47 2 0.02
48 2 0.02
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTACAT
Found at i:49233416 original size:92 final size:92
Alignment explanation
Indices: 49233259--49233429 Score: 261
Period size: 92 Copynumber: 1.9 Consensus size: 92
49233249 CGCCCATAAG
* * *
49233259 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCACATCCATGAGTGAACTCGGACACAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACACAACTCA
*
49233324 ACGAGTTCGGATGCCTAGTTACTCTCA
66 ACGAGTTCAGATGCCTAGTTACTCTCA
* * ** *
49233351 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACACAACTCA
49233416 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
49233430 TCAACCATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (92 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACACAACTCA
ACGAGTTCAGATGCCTAGTTACTCTCA
Found at i:49235213 original size:29 final size:28
Alignment explanation
Indices: 49235160--49235217 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
49235150 TGAATATGTA
49235160 TGAGTTATATTTACTGAAATGTTCTTAAC
1 TGAGTTATATTTA-TGAAATGTTCTTAAC
*
49235189 TGAGTTATATGTT-TGTAATGCTTCTTAAC
1 TGAGTTATAT-TTATGAAATG-TTCTTAAC
49235218 CTATTCTAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 6 0.23
29 18 0.69
30 2 0.08
ACGTcount: A:0.28, C:0.10, G:0.16, T:0.47
Consensus pattern (28 bp):
TGAGTTATATTTATGAAATGTTCTTAAC
Found at i:49235966 original size:28 final size:26
Alignment explanation
Indices: 49235910--49235967 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
49235900 AAAAATATAT
* *
49235910 TTAATAATTTATTTTAAAATATTTCA
1 TTAATAATTTATTTTAAAATAATTAA
*
49235936 TTAATAATTTAGGTTTTAAATTAATTAA
1 TTAATAATTTA--TTTTAAAATAATTAA
49235964 TTAA
1 TTAA
49235968 ATTGAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 11 0.41
28 16 0.59
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TTAATAATTTATTTTAAAATAATTAA
Found at i:49238288 original size:19 final size:19
Alignment explanation
Indices: 49238242--49238289 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
49238232 CTGTCTATTT
* *
49238242 ATCTCATTTACACACTTGA
1 ATCTAATTTACACACTCGA
*
49238261 ATCTCATTTACACACTCGA
1 ATCTAATTTACACACTCGA
49238280 A-CATAATTTA
1 ATC-TAATTTA
49238290 TCTTTGCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 25 0.96
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.35
Consensus pattern (19 bp):
ATCTAATTTACACACTCGA
Found at i:49243125 original size:12 final size:12
Alignment explanation
Indices: 49243105--49243135 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
49243095 TGCCACACGA
49243105 CCATGTGGTAGG
1 CCATGTGGTAGG
*
49243117 CCGTGTGGTAGG
1 CCATGTGGTAGG
49243129 CCATGTG
1 CCATGTG
49243136 CCAAAACACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.19, G:0.42, T:0.26
Consensus pattern (12 bp):
CCATGTGGTAGG
Found at i:49246098 original size:2 final size:2
Alignment explanation
Indices: 49246091--49246115 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49246081 TAGAATTGGA
49246091 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
49246116 TGAAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:49248033 original size:19 final size:19
Alignment explanation
Indices: 49248009--49248048 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
49247999 ATATCTTATC
49248009 ATATACATATATATATCAT
1 ATATACATATATATATCAT
49248028 ATATACATATATATATCAT
1 ATATACATATATATATCAT
49248047 AT
1 AT
49248049 CAATCCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATACATATATATATCAT
Found at i:49249504 original size:66 final size:69
Alignment explanation
Indices: 49249374--49249504 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 69
49249364 GGGATGTATC
* * *
49249374 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTAC---AGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
49249439 AAGGACA
63 AAGGACA
* * * *
49249446 CCATTTAGACAAGAGAGCTAC-GA-GATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
49249505 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
66 23 0.44
67 7 0.13
68 2 0.04
72 20 0.38
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAG
GACA
Found at i:49254201 original size:47 final size:47
Alignment explanation
Indices: 49254135--49254612 Score: 785
Period size: 47 Copynumber: 10.1 Consensus size: 47
49254125 GAAATGATAG
49254135 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49254182 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
49254231 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
49254280 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49254327 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49254374 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
49254421 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49254468 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49254515 TAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
49254562 CAGGGCCGAGTGGCCAACGTGATGCATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49254609 TAAG
1 TAAG
49254613 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 314 0.77
49 96 0.23
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49254787 original size:37 final size:37
Alignment explanation
Indices: 49254731--49254809 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
49254721 CCGAGCTCTA
* *
49254731 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
49254768 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49254805 AAGAC
1 AAGAC
49254810 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49263211 original size:56 final size:55
Alignment explanation
Indices: 49263151--49263341 Score: 271
Period size: 56 Copynumber: 3.4 Consensus size: 55
49263141 TCCCAGACAG
* *
49263151 GGTCTTACTCGTACACATATATTAGAGTCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCG-ACACATATATTCGAGTCACATATCGATGCCAACGTATAAAACGT
49263207 GGTCTTACTCG-CACATATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGACACATATAT-TCG-AGTCACATATCGATGCCAACGTATAAAACGT
*
49263263 GGTCTTACTCGAACACATATA-TCGATGTCACATATCAATGCCAACGTATAAAACGT
1 GGTCTTACTCG-ACACATATATTCGA-GTCACATATCGATGCCAACGTATAAAACGT
49263319 GGTCTTACTC-ACATACATATATT
1 GGTCTTACTCGAC--ACATATATT
49263342 GACGCCATGG
Statistics
Matches: 124, Mismatches: 3, Indels: 15
0.87 0.02 0.11
Matches are distributed among these distances:
54 11 0.09
55 3 0.02
56 101 0.81
57 1 0.01
58 8 0.06
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (55 bp):
GGTCTTACTCGACACATATATTCGAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:49263978 original size:15 final size:15
Alignment explanation
Indices: 49263955--49263985 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49263945 TCAAAAATTC
49263955 CAATACAAAACATAT
1 CAATACAAAACATAT
*
49263970 CAATCCAAAACATAT
1 CAATACAAAACATAT
49263985 C
1 C
49263986 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:49275340 original size:40 final size:40
Alignment explanation
Indices: 49275266--49275484 Score: 336
Period size: 40 Copynumber: 5.5 Consensus size: 40
49275256 AACCCAAGTA
* *
49275266 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
49275305 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49275345 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
49275385 TCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
49275425 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49275464 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
49275485 GTCATCCGAA
Statistics
Matches: 165, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 34 0.21
40 130 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49283011 original size:40 final size:40
Alignment explanation
Indices: 49282937--49283115 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
49282927 AACCCAAGTA
* *
49282937 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
49282976 CCTTCGGGACTTAGCGCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
49283016 CCTTCGGGACATAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
49283056 CCTTCGAGAGTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49283095 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
49283116 GTCTTCCGAA
Statistics
Matches: 125, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.28
40 89 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49290322 original size:39 final size:41
Alignment explanation
Indices: 49290227--49290410 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
49290217 TTGAATGCTG
*
49290227 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
49290266 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
49290306 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
49290345 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
49290385 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49290411 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:49290362 original size:79 final size:81
Alignment explanation
Indices: 49290227--49290410 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
49290217 TTGAATGCTG
49290227 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
49290290 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
49290305 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
49290366 ATTTGTGTGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
49290385 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49290411 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 57 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:49290432 original size:79 final size:79
Alignment explanation
Indices: 49290279--49290443 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
49290269 GGACTAAGAT
* ** *
49290279 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
49290344 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49290358 CCGAAGGCATTTGTGTGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
49290420 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
49290437 CCGAAGG
1 CCGAAGG
49290444 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:49298257 original size:39 final size:41
Alignment explanation
Indices: 49298162--49298344 Score: 199
Period size: 39 Copynumber: 4.6 Consensus size: 41
49298152 TTGAATGCTG
*
49298162 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
49298201 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
49298241 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
49298280 TCCGGGTTAAGTCCCGAAGGCATTTGTG-GAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
49298319 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49298345 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
38 1 0.01
39 82 0.66
40 32 0.26
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:49298297 original size:79 final size:80
Alignment explanation
Indices: 49298162--49298344 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 80
49298152 TTGAATGCTG
49298162 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
49298225 TGTGCGAGA-TACTA-A
66 TGTG-GA-ATTACTATA
* * **
49298240 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
49298301 ATTTGTGGAATTACTATA
63 ATTTGTGGAATTACTATA
* *
49298319 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49298345 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
77 1 0.01
78 26 0.29
79 56 0.62
80 8 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGGAATTACTATA
Found at i:49298362 original size:79 final size:78
Alignment explanation
Indices: 49298214--49298377 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 78
49298204 GGACTAAGAT
* ** *
49298214 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
49298279 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
*
49298293 CCGAAGGCATTTGTG-GA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
49298354 CTATATCCGGTTAAATT
62 CTAAATCCGGTTAAATC
49298371 CCGAAGG
1 CCGAAGG
49298378 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
77 3 0.04
78 30 0.41
79 40 0.55
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAATC
Found at i:49311296 original size:39 final size:41
Alignment explanation
Indices: 49311201--49311384 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
49311191 TTGAATGCTG
*
49311201 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
49311240 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
49311280 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
49311319 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
49311359 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49311385 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:49311336 original size:79 final size:81
Alignment explanation
Indices: 49311201--49311384 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
49311191 TTGAATGCTG
49311201 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
49311264 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
49311279 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
49311340 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
49311359 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49311385 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:49311406 original size:79 final size:79
Alignment explanation
Indices: 49311253--49311417 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
49311243 GGACTAAGAT
* ** *
49311253 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
49311318 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
49311332 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
49311394 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
49311411 CCGAAGG
1 CCGAAGG
49311418 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:49319235 original size:39 final size:41
Alignment explanation
Indices: 49319140--49319323 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
49319130 TTGAATGCTG
*
49319140 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
49319179 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
49319219 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
49319258 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
49319298 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49319324 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:49319275 original size:79 final size:81
Alignment explanation
Indices: 49319140--49319323 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
49319130 TTGAATGCTG
49319140 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
49319203 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
49319218 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
49319279 ATTTGTGTGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
49319298 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49319324 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 57 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:49319345 original size:79 final size:79
Alignment explanation
Indices: 49319192--49319356 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
49319182 GGACTAAGAT
* ** *
49319192 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
49319257 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49319271 CCGAAGGCATTTGTGTGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
49319333 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
49319350 CCGAAGG
1 CCGAAGG
49319357 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:49335481 original size:8 final size:8
Alignment explanation
Indices: 49335470--49335498 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
49335460 TGTGGTTAAG
49335470 TGGAGTGT
1 TGGAGTGT
49335478 TGGAGTGT
1 TGGAGTGT
49335486 TGGAGTGT
1 TGGAGTGT
49335494 TGGAG
1 TGGAG
49335499 GTCCTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.52, T:0.34
Consensus pattern (8 bp):
TGGAGTGT
Found at i:49342289 original size:27 final size:26
Alignment explanation
Indices: 49342259--49342312 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
49342249 CTAGACCTCT
*
49342259 TAGTTGATAAAATGGCTATTATGACCC
1 TAGTTGATAAAATGACTATTATG-CCC
49342286 TAGTTGATAAAATGACTATTATGCCC
1 TAGTTGATAAAATGACTATTATGCCC
49342312 T
1 T
49342313 TATGAGAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (26 bp):
TAGTTGATAAAATGACTATTATGCCC
Found at i:49350068 original size:27 final size:27
Alignment explanation
Indices: 49350032--49350088 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
49350022 CCTAGACCCT
*
49350032 CTAGTTGATAAAATGGCTATTATGCCC
1 CTAGTTGATAAAATGACTATTATGCCC
*
49350059 CTAGTTGATAAAATGACTGTTATGCCC
1 CTAGTTGATAAAATGACTATTATGCCC
49350086 CTA
1 CTA
49350089 TGAGAAGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (27 bp):
CTAGTTGATAAAATGACTATTATGCCC
Found at i:49351564 original size:46 final size:46
Alignment explanation
Indices: 49351492--49351611 Score: 204
Period size: 46 Copynumber: 2.6 Consensus size: 46
49351482 TTTTGGGCAT
*
49351492 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
* *
49351538 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
*
49351584 CCGAACTCATTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
49351612 GTGAAATGTA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
Found at i:49353473 original size:27 final size:27
Alignment explanation
Indices: 49353433--49353484 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
49353423 TATTTTGGGT
* * *
49353433 ATTTTTATTGTAATAAGGCCTTTATGG
1 ATTTTTACTATAATAAGGCATTTATGG
49353460 ATTTTTACTATAATAAGGCATTTAT
1 ATTTTTACTATAATAAGGCATTTAT
49353485 TTTGGGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (27 bp):
ATTTTTACTATAATAAGGCATTTATGG
Found at i:49354734 original size:8 final size:8
Alignment explanation
Indices: 49354723--49354749 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
49354713 TGGTTAAGTA
49354723 GAGTGTTG
1 GAGTGTTG
49354731 GAGTGTTG
1 GAGTGTTG
49354739 GAGTGTTG
1 GAGTGTTG
49354747 GAG
1 GAG
49354750 GTCCTGTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.52, T:0.33
Consensus pattern (8 bp):
GAGTGTTG
Found at i:49358749 original size:9 final size:9
Alignment explanation
Indices: 49358735--49358766 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
49358725 CTTGCTGTCA
49358735 AGAAATAAG
1 AGAAATAAG
49358744 AGAAATAAG
1 AGAAATAAG
*
49358753 AGAAAAAAG
1 AGAAATAAG
49358762 AGAAA
1 AGAAA
49358767 ATGATGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (9 bp):
AGAAATAAG
Found at i:49361015 original size:22 final size:21
Alignment explanation
Indices: 49360983--49361023 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
49360973 TTATTATTAA
*
49360983 ATTATATTTAATAATAATACT
1 ATTATATTTAATAACAATACT
49361004 ATTATAATTTAATAACAATA
1 ATTAT-ATTTAATAACAATA
49361024 ACAATAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTATATTTAATAACAATACT
Found at i:49365319 original size:20 final size:20
Alignment explanation
Indices: 49365273--49365319 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
49365263 TATTTAAATA
*
49365273 TATATTATGTAGAATTATAT
1 TATATTATGTAAAATTATAT
* *
49365293 TAAATTATTTAAATATTAT-T
1 TATATTATGTAAA-ATTATAT
49365313 TATATTA
1 TATATTA
49365320 AATTATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
TATATTATGTAAAATTATAT
Found at i:49365326 original size:14 final size:14
Alignment explanation
Indices: 49365287--49365327 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
49365277 TTATGTAGAA
49365287 TTATATTAAATTAT
1 TTATATTAAATTAT
*
49365301 TTA-A--ATATTAT
1 TTATATTAAATTAT
49365312 TTATATTAAATTAT
1 TTATATTAAATTAT
49365326 TT
1 TT
49365328 TTAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 1 0.05
14 11 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATATTAAATTAT
Found at i:49366688 original size:3 final size:3
Alignment explanation
Indices: 49366680--49366736 Score: 57
Period size: 3 Copynumber: 19.0 Consensus size: 3
49366670 AATAGGGGTG
*
49366680 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA CA-A ACA ATA ATA CAT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA
49366724 ATA TATA ATA ATA
1 ATA -ATA ATA ATA
49366737 GTAGTAGTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
2 5 0.11
3 36 0.77
4 6 0.13
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:49366827 original size:3 final size:3
Alignment explanation
Indices: 49366814--49366893 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
49366804 GAGGGCATAT
49366814 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
49366858 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
49366894 AACAAAGCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:49366836 original size:12 final size:12
Alignment explanation
Indices: 49366812--49366890 Score: 72
Period size: 12 Copynumber: 6.5 Consensus size: 12
49366802 GAGAGGGCAT
49366812 ATATAATATAATA
1 ATATAA-ATAATA
49366825 ATATAAATAATA
1 ATATAAATAATA
* *
49366837 ATATATACATGAGA
1 ATATA-A-ATAATA
49366851 A-AT-AATAATA
1 ATATAAATAATA
49366861 ATATAAATAATA
1 ATATAAATAATA
* *
49366873 GTAAAAATAATA
1 ATATAAATAATA
*
49366885 AAATAA
1 ATATAA
49366891 TAAAACAAAG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
10 5 0.09
11 3 0.06
12 31 0.58
13 9 0.17
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:49367249 original size:20 final size:20
Alignment explanation
Indices: 49367221--49367265 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
49367211 CAACCTTCTT
*
49367221 TCCAGAAAAACAAAAAAACACC
1 TCCA-AAAAAGAAAAAAA-ACC
49367243 TCCAAAAAAGAAAAAAAACC
1 TCCAAAAAAGAAAAAAAACC
49367263 TCC
1 TCC
49367266 TCCAAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 12 0.55
22 4 0.18
ACGTcount: A:0.62, C:0.27, G:0.04, T:0.07
Consensus pattern (20 bp):
TCCAAAAAAGAAAAAAAACC
Found at i:49367267 original size:23 final size:22
Alignment explanation
Indices: 49367221--49367297 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
49367211 CAACCTTCTT
* *
49367221 TCCAGAAAAACAAAAAAA-CACC
1 TCCA-AAAAAAAAAAAAACCTCC
49367243 TCCAAAAAAGAAAAAAAACCTCC
1 TCCAAAAAA-AAAAAAAACCTCC
* * *
49367266 TCCAAAACAAAGAACAATCCTCC
1 TCCAAAA-AAAAAAAAAACCTCC
49367289 TCCAAAAAA
1 TCCAAAAAA
49367298 CCAAAAACCC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
21 5 0.11
22 13 0.28
23 27 0.57
24 2 0.04
ACGTcount: A:0.58, C:0.29, G:0.04, T:0.09
Consensus pattern (22 bp):
TCCAAAAAAAAAAAAAACCTCC
Found at i:49367861 original size:44 final size:44
Alignment explanation
Indices: 49367813--49368232 Score: 363
Period size: 44 Copynumber: 9.6 Consensus size: 44
49367803 TCTTCGATCC
* *
49367813 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * * * *
49367857 GTTCCCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTA
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC-AACTT
* * * * * * * * * *
49367901 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
*
49367945 GTTCCCTATAAGCACAGGGATGCCAAATCT-ATTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGA-TATTTTCAACTT
*
49367989 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
49368033 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * * *
49368076 GCTTCACTATAAGCCCAGGAATGTCAGATCTGCTATCTTCGA-TCC
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
* *
49368121 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * * * *
49368165 GTTCCCTATAAGCACAGGGATACC-ATTCTAAAATCTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
49368208 GTTCCCTATAAGCACAGGGATGCCA
1 GTTCCCTATAAGCACAGGGATGCCA
49368233 TGCTGAAATC
Statistics
Matches: 300, Mismatches: 59, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
42 4 0.01
43 51 0.17
44 223 0.74
45 18 0.06
46 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
Found at i:49368019 original size:176 final size:176
Alignment explanation
Indices: 49367812--49368291 Score: 811
Period size: 176 Copynumber: 2.7 Consensus size: 176
49367802 ATCTTCGATC
*
49367812 CGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGA
1 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
* *
49367877 TGTCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
49367942 TCCGTTCCCTATAAGCACAGGGATGCCAAATCT-ATTGTTTTCAACT
131 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACT
*
49367988 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
1 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
* * *
49368053 TGCCATGCTGAAATCTTTGATCTGCTTCACTATAAGCCCAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
49368118 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
131 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
* * * ** *
49368164 CGTTCCCTATAAGCACAGGGATACC-ATTCTAAAATCTTCAACTTGTTCCCTATAAGCACAGGGA
1 CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
*
49368228 TGCCATGCTGAAATCTTGGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
66 TGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
49368292 GTCTGCTCCT
Statistics
Matches: 286, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
175 95 0.33
176 190 0.66
177 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (176 bp):
CGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
TGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT
Found at i:49368045 original size:132 final size:132
Alignment explanation
Indices: 49367777--49368182 Score: 480
Period size: 132 Copynumber: 3.1 Consensus size: 132
49367767 TGCTTCACTG
*
49367777 TAAGCACAGGAATGTCAGATTTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
* ** * * *
49367842 TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTACTTC
66 TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTAGTTC
* *
49367905 ACTG
129 CCTA
49367909 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
** *
49367974 TATTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCC
66 TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTAGTTCCC
49368039 TA
131 TA
* * ** * * * * * * *
49368041 TAAGCACAGGGATG-C-CATGCTGAAATCTTTGATCTGCTTCACTATAAGCCCAGGAATGTCAGA
1 TAAGCACAGGAATGTCAGAT-CTGCTATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCAAA
* * * * *
49368104 TCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTCGTT
64 TCTGCTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTAGTT
49368168 CCCTA
128 CCCTA
49368173 TAAGCACAGG
1 TAAGCACAGG
49368183 GATACCATTC
Statistics
Matches: 239, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
130 2 0.01
131 15 0.06
132 212 0.89
133 8 0.03
134 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (132 bp):
TAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTAGTTCCC
TA
Found at i:49368429 original size:68 final size:68
Alignment explanation
Indices: 49368344--49368542 Score: 294
Period size: 68 Copynumber: 2.9 Consensus size: 68
49368334 TCTTCTTCCA
* * * *
49368344 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
49368409 -TT
66 CCT
* * *
49368411 GTTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
49368476 TCCT
65 TCCT
*
49368480 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
49368543 AATTTGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
67 6 0.05
68 111 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:49368672 original size:43 final size:43
Alignment explanation
Indices: 49368598--49369505 Score: 436
Period size: 43 Copynumber: 20.8 Consensus size: 43
49368588 GCCCATCATC
* * * *
49368598 TTCGATCTATTTCCCAACTGCTTAAGGGGTTAAGATCTGTAAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* * * *
49368641 TTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* * * *
49368684 TCTTC-AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAA
1 --TTCGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* ** * **
49368729 TTCG-GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATT
1 TTCGATC-TGTTACCCTACTGCTTAGGGGGTT-AAGATC-TGTAAA
** *
49368773 TTTTATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
** * * * * *
49368816 TCTTTAGTCAGTTACCCTACTTCTTAAGGGTTTAAG-GCTTGTAAA
1 T-TCGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAA
* * * ** * **
49368861 TTTG-GCTTGTTACCCTACTGCTTAGTGGGTTAAAGCCCAT-CATC
1 TTCGATC-TGTTACCCTACTGCTTAGGGGGTT-AAGATC-TGTAAA
* * *
49368905 TTTGATCTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGTAAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* * * *
49368948 TCTTC-AGCCTGTTACCCTACTACTTAGGGCGTTAAG-GCTTGTAAA
1 --TTCGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAA
* * * ** * **
49368993 TTTG-GCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCAT-CATC
1 TTCGATC-TGTTACCCTACTGCTTAGGGGGTT-AAGATC-TGTAAA
* * ** **
49369037 TTTGATCTATTTTCCTACTGCTTAGGGGGTTAAGATCT-TCATC
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAA
* * * *
49369080 TTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
*** * * **
49369122 TTC-AGTCTGTTACCCTACCAATTAGGGGTTTAAGACCCT-TCATC
1 TTCGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGT-AAA
* *
49369166 TTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* *
49369209 TCTTC-AGCCTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAA
1 --TTCGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAA
* * ** * **
49369254 TT-TAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATC
1 TTCGATC-TGTTACCCTACTGCTTAGGGGGTT-AAGATC-TGTAAA
* * **
49369298 TTCAATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-TCATC
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAA
* * *
49369341 TTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATC--TACAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AA
* * * * * ***
49369383 TTCGATCTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTC
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAA
* * *
49369427 TTCGATCTGTTTCCCTACTACTTAGGGGGTTATGATCTGTAAA
1 TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
** * * *
49369470 TCTTTAGCCTGTTACCCTATTGCTTAGGGGCTTAAG
1 T-TCGA-TCTGTTACCCTACTGCTTAGGGGGTTAAG
49369506 GCTTATGAAT
Statistics
Matches: 659, Mismatches: 156, Indels: 98
0.72 0.17 0.11
Matches are distributed among these distances:
41 2 0.00
42 65 0.10
43 230 0.35
44 190 0.29
45 172 0.26
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (43 bp):
TTCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAA
Found at i:49368783 original size:132 final size:131
Alignment explanation
Indices: 49368647--49369509 Score: 1016
Period size: 132 Copynumber: 6.6 Consensus size: 131
49368637 TAAATTCAAC
* * *
49368647 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * *
49368712 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTT
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
49368777 AT
130 AT
* * * *
49368779 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTTAGTCAGTTACCCTACTTCTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-AG
* * *
49368844 GGTTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGTGGGTTAAAGCCCATCATCTTTG
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
49368909 AT
130 AT
* *
49368911 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
49368976 GCGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTTG
66 G-GTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
49369041 AT
130 AT
* * * * *
49369043 CTATTTTCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * *** * *
49369105 GGAGATAA-GATCTG-CAATTCAG-TCTGTTACCCTACCAATTA-GGGGTTTAAGACCCTTCATC
65 GG-GTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
49369166 TTTGAT
126 TTTGAT
49369172 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-G
** **
49369237 GGGTTAAGGCTTGTAAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCA
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
49369302 AT
130 AT
* * *
49369304 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * * ** *
49369366 GGAGATAA-G-ATCTACAATTC-GATCTGTTACCCTACCGATTA-GGGGTTTAAGACCTTTCGTC
65 GG-GTTAAGGCTTGTA-AATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
*
49369427 TTCGAT
126 TTTGAT
* * * *
49369433 CTGTTTCCCTACTACTTAGGGGGTTATGATCTGTAAATCTTTAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
49369498 GGCTTAAGGCTT
66 GG-TTAAGGCTT
49369510 ATGAATTCAC
Statistics
Matches: 628, Mismatches: 78, Indels: 49
0.83 0.10 0.06
Matches are distributed among these distances:
128 24 0.04
129 132 0.21
130 61 0.10
131 62 0.10
132 334 0.53
133 15 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (131 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGA
T
Found at i:49368874 original size:175 final size:176
Alignment explanation
Indices: 49368561--49368891 Score: 434
Period size: 175 Copynumber: 1.9 Consensus size: 176
49368551 ATTTCCAGCC
* *
49368561 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * * *
49368626 GTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAG
66 GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAAGGGGTTAAGACTTGTAAATCTTCAG
49368691 CCTGTTACCCTACTGCTTAG-GGGTTTAAGGTTTGTAAATTCGGCT
131 CCTGTTACCCTACTGCTTAGTGGGTTTAAGGTTTGTAAATTCGGCT
* * ** * * *
49368736 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* ** * * *
49368801 GTTAAGATCTGTAAATCTTTAGTCAGTTACCCTACTTCTTAAGGGTTTAAGGCTTGTAAAT-TT-
66 GTTAAGATCTGTAAA--TTCAACCAGTTACCCTACTGCTTAAGGGGTTAAGACTTGTAAATCTTC
* *
49368864 GGCTTGTTACCCTACTGCTTAGTGGGTT
129 AGCCTGTTACCCTACTGCTTAGTGGGTT
49368892 AAAGCCCATC
Statistics
Matches: 132, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
175 91 0.69
176 7 0.05
177 34 0.26
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37
Consensus pattern (176 bp):
TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAAGGGGTTAAGACTTGTAAATCTTCAG
CCTGTTACCCTACTGCTTAGTGGGTTTAAGGTTTGTAAATTCGGCT
Found at i:49369237 original size:261 final size:260
Alignment explanation
Indices: 49368647--49369509 Score: 1223
Period size: 261 Copynumber: 3.3 Consensus size: 260
49368637 TAAATTCAAC
* * *
49368647 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * * *
49368712 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTT
66 GGCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTA
* * * * *
49368777 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTT-TAGTCAGTTACCCTACTTCTT
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTT
** * * * * * * * *
49368841 AAGGG-TTTAAG-GCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGTGGGTTAAAG-CCCATCA
193 -AGGGAGATAAGATC-TG-CAATTCGTC-TGTTACCCTACCGATTAG-GGGTTTAAGACCCTTCA
49368903 TCTTTGAT
253 TCTTTGAT
* *
49368911 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTACTTA-G
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
49368975 GGCGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTT
66 GGC-TTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTT
* * *
49369040 GATCTATTTTCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAG
130 AATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAG
*
49369105 GGAGATAAGATCTGCAATTCAGTCTGTTACCCTACCAATTAGGGGTTTAAGACCCTTCATCTTTG
195 GGAGATAAGATCTGCAATTC-GTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTTG
49369170 AT
259 AT
49369172 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * *
49369237 GGGTTAAGGCTTGTAAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCA
66 GGCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTA
49369302 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
* * * *
49369367 GAGATAAGATCTACAATTCGATCTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTCGA
196 GAGATAAGATCTGCAATTCG-TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTTGA
49369432 T
260 T
* * * *
49369433 CTGTTTCCCTACTACTTAGGGGGTTATGATCTGTAAATCTTTAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
49369498 GGCTTAAGGCTT
66 GGCTTAAGGCTT
49369510 ATGAATTCAC
Statistics
Matches: 543, Mismatches: 48, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
260 9 0.02
261 350 0.64
262 31 0.06
263 6 0.01
264 147 0.27
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (260 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGCTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTA
ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
GAGATAAGATCTGCAATTCGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTTGAT
Found at i:49369675 original size:66 final size:66
Alignment explanation
Indices: 49369569--49369695 Score: 209
Period size: 66 Copynumber: 1.9 Consensus size: 66
49369559 TCTATGCTTA
* *
49369569 TGTCAAATGATTAGGATGATATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGATATGATCGAAATGAATCAAATGATCCTAACTAGATGTGTTATGAAT
49369634 G
66 G
* * *
49369635 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGATCTTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGATATGATCGAAATGAATCAAATGATCCTAACTAGATGTGTTAT
49369696 TATATGAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGATATGATCGAAATGAATCAAATGATCCTAACTAGATGTGTTATGAAT
G
Found at i:49370886 original size:6 final size:6
Alignment explanation
Indices: 49370875--49370910 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
49370865 TGTGTTTTTT
49370875 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
49370911 ATATAACTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TTTGCC
Found at i:49373723 original size:19 final size:20
Alignment explanation
Indices: 49373699--49373745 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
49373689 AGTGAAAGTT
49373699 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
49373718 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
49373738 -AATGCAAA
1 TAATGCAAA
49373746 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:49376576 original size:3 final size:3
Alignment explanation
Indices: 49376563--49376645 Score: 66
Period size: 3 Copynumber: 27.3 Consensus size: 3
49376553 GAGGGCATAT
*
49376563 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATG ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -ATA AT-A ATA ATA ATA
* *
49376610 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
49376646 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
2 8 0.12
3 46 0.71
4 11 0.17
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:49376585 original size:12 final size:12
Alignment explanation
Indices: 49376561--49376642 Score: 76
Period size: 12 Copynumber: 6.5 Consensus size: 12
49376551 GAGAGGGCAT
49376561 ATATAATATAATA
1 ATATAA-ATAATA
49376574 ATATAAATAATA
1 ATATAAATAATA
*
49376586 ATATATACATGATA
1 ATATA-A-ATAATA
49376600 A-ATAATAATAATA
1 ATAT-A-AATAATA
49376613 ATATAAATAATA
1 ATATAAATAATA
* *
49376625 GTAAAAATAATA
1 ATATAAATAATA
*
49376637 AAATAA
1 ATATAA
49376643 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
12 31 0.53
13 16 0.28
14 11 0.19
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:49376605 original size:18 final size:17
Alignment explanation
Indices: 49376563--49376644 Score: 83
Period size: 18 Copynumber: 4.4 Consensus size: 17
49376553 GAGGGCATAT
49376563 ATAATATAATAATATAA
1 ATAATATAATAATATAA
49376580 ATAATAATATATACATGATAA
1 ATAAT-ATA-ATA-AT-ATAA
49376601 ATAATAATAATAATATAA
1 ATAAT-ATAATAATATAA
*
49376619 ATAATAGTAAAAATAATAAA
1 ATAATA-TAATAAT-AT-AA
49376639 ATAATA
1 ATAATA
49376645 AAACAAAGCT
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
17 6 0.11
18 18 0.32
19 7 0.12
20 13 0.23
21 13 0.23
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAATATAATAATATAA
Found at i:49376633 original size:27 final size:26
Alignment explanation
Indices: 49376563--49376646 Score: 81
Period size: 27 Copynumber: 3.4 Consensus size: 26
49376553 GAGGGCATAT
49376563 ATAATAT-AATAATAT--AAATAATA
1 ATAATATAAATAATATAAAAATAATA
* * *
49376586 AT-ATATACATGATA-AATAATAATA
1 ATAATATAAATAATATAAAAATAATA
49376610 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATA-TAAAAATAATA
49376637 A-AATAATAAA
1 ATAAT-ATAAA
49376647 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
22 4 0.08
23 7 0.15
24 9 0.19
25 10 0.21
26 3 0.06
27 15 0.31
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (26 bp):
ATAATATAAATAATATAAAAATAATA
Found at i:49377029 original size:25 final size:25
Alignment explanation
Indices: 49376974--49377062 Score: 87
Period size: 24 Copynumber: 3.6 Consensus size: 25
49376964 CAACCTTCTT
* *
49376974 TCCAAAAAAACAAAAAAAAAAACACC
1 TCCAAAAAAAC-AAAAAAAAACCTCC
49377000 T-CAAAAAAACAAAAAAAAACCTCC
1 TCCAAAAAAACAAAAAAAAACCTCC
* *
49377024 TCC---AAAACAAAGAACAATCCTCC
1 TCCAAAAAAACAAA-AAAAAACCTCC
*
49377047 TCCAAAAAACCAAAAA
1 TCCAAAAAAACAAAAA
49377063 CCCACCCTCT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
22 8 0.15
23 12 0.23
24 13 0.25
25 12 0.23
26 8 0.15
ACGTcount: A:0.64, C:0.27, G:0.01, T:0.08
Consensus pattern (25 bp):
TCCAAAAAAACAAAAAAAAACCTCC
Found at i:49377030 original size:22 final size:23
Alignment explanation
Indices: 49377005--49377053 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
49376995 ACACCTCAAA
49377005 AAAACAAA-AAAAAACCTCCTCC
1 AAAACAAAGAAAAAACCTCCTCC
* *
49377027 AAAACAAAGAACAATCCTCCTCC
1 AAAACAAAGAAAAAACCTCCTCC
49377050 AAAA
1 AAAA
49377054 AACCAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.57, C:0.31, G:0.02, T:0.10
Consensus pattern (23 bp):
AAAACAAAGAAAAAACCTCCTCC
Found at i:49378606 original size:27 final size:27
Alignment explanation
Indices: 49378574--49378631 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
49378564 ATATCGTACA
49378574 TAATTATTAAACTAAATTTTAAAACAG
1 TAATTATTAAACTAAATTTTAAAACAG
49378601 TAATTATTAAACTAAATTTTAAAACAG
1 TAATTATTAAACTAAATTTTAAAACAG
49378628 TAAT
1 TAAT
49378632 GATTTGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (27 bp):
TAATTATTAAACTAAATTTTAAAACAG
Found at i:49379478 original size:25 final size:25
Alignment explanation
Indices: 49379444--49379492 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
49379434 GATATTTAAT
49379444 CAAAACCGAATGGTACAAAGCAGAA
1 CAAAACCGAATGGTACAAAGCAGAA
49379469 CAAAACCGAATGGTACAAAGCAGA
1 CAAAACCGAATGGTACAAAGCAGA
49379493 GCAGAACTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.08
Consensus pattern (25 bp):
CAAAACCGAATGGTACAAAGCAGAA
Found at i:49382385 original size:734 final size:734
Alignment explanation
Indices: 49380214--49385538 Score: 6163
Period size: 733 Copynumber: 7.2 Consensus size: 734
49380204 ACCGAATGGT
* * * *
49380214 ACAGAACAAGAAGGAGCAGAGCAAAACAAAACATGTATGTTTATGCAGGTGCAGTACTTTTT-AG
1 ACAGAACAAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTA-TTTTTCAA
* * *
49380278 ATAGATTAGAATGCAGATTTATTAGAAACAGTCATT-CCAAACTTTGTTACACACAAAAATAGAG
65 ACAGATTAGAATGCAGATTTATCAGAAACAGTC-TTCCCAAACTCTGTTACACACAAAAATAGAG
* * * * * *
49380342 TTCTCCCCCAAACTAATCCATCCAAAACACACTAAGAAAGTCA-CCCGGGGTTAATACCACTCAA
129 TTCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTC-GGGTTGATACCACTAAA
* * *
49380406 TATAACACCCCAAACCTAACCTGGAAGTTTAAGCAGAACTTGGACGAGTTACACCAATGCATTTA
193 TGTAACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTA
* * * * *
49380471 AAGCAGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCGTTTTTTTCAATTTTGGTGA
258 AAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTTTCGATTTAGGTGA
* * * * *
49380536 TTTTGTAGCTTCTTGTTAGAAATTGACTAATACGGACAAGATTATCAAAAGGAAAGCAAGGTAAA
323 TTTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAAA
* * * *
49380601 TCCAAGACAATTTACAAACCCAAAAGA-CTAGTTCGTAGTTATTTCAGTGTAAAACAATTCGAGC
388 TCCAAGACAATTTACAAACCCAAAAGATC-AATTCGCAGTTATTTTAGTGTAAAACAATCCGAGC
* * * * *
49380665 TCCCGTACGACGTCCGATCCTAAATCAGATGTTTTACTAAATAGATGAA-GTTAGAAAAAGGGTG
452 TCCCGTACGACATCCGATCCTAAATCAGATGTTTTACTGAACAGATGAAGGTAAGACAAAGGGTG
* **
49380729 AGTTACCAAGCATCGCGTATAACCAGGCTCAAATACAAATAAATAGAGCATACTATATAACTCGT
517 AGTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCGT
* * * * *
49380794 AGTAATGCAAATAACTGAAGAGCAGTTGTATAACCAATTCAGACAACACTAGAGTATCACAGAGA
582 AGTAATGCAAATAA-TTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGA
* *
49380859 TTTAATCAAAGGTCGTACAATAGAACTAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTA
646 TTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTA
* *
49380924 CAGAGCAGAGCAGAACTCAACAGA
711 TAGAGCAGAGCAGAACTGAACAGA
* * * *
49380948 ATAGAACAAAACGGAGTAGAGCAGAACATAACATGTATGTTTATGCAGGTGCAGTATTTTTCAAA
1 ACAGAACAAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAAA
* * * * *
49381013 TAGATCAGAATGCGGATTTATCAGAAACAGTCATCTCAAACATC-GTTACACAC-AAAATAGAGT
66 CAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAAC-TCTGTTACACACAAAAATAGAGT
* * *
49381076 TCTTCCTCGAACTCATCCATCCAAAACACACTAAGAAAGTCATCTCGGGTT-ATACCACTAAATG
130 TCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTCGGGTTGATACCACTAAATG
* * * * * * *
49381140 TGACACCCCAAACCAGACTTGGAAATTTAAGCCGAACTTGGACAAGTTACACCAATACATTGAAA
195 TAACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTAAA
* * * * *
49381205 ACTGGTTTCTTTTTGAGATTTTAATTTTGAAAACGAGAAATT-AGTTTTTTTCGATTTGGGTGAT
260 ACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCA-TTTTTTTCGATTTAGGTGAT
** *
49381269 TTTGTAGTTTCGTGTTAGAAATTGACTGATATAGACGAGATTATCAAAAGAAAAGCAAGGCAAAT
324 TTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAAAT
* * **
49381334 CTAACACAATTTACAAACCCAAAAGATCAATTAACAGTTA--TT--TG-AAAACAATCCGAGCTC
389 CCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAATCCGAGCTC
** ** * * * * *
49381394 GAGTTTGTCATCCGATCCTAAATCAGATGCTTT-CTCGAATAGATAAATGTAAGACAAAGGGTGA
454 CCGTACGACATCCGATCCTAAATCAGATGTTTTACT-GAACAGATGAAGGTAAGACAAAGGGTGA
* * *
49381458 GTTACGAAGCACCGCGTACAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTAGTA
518 GTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCGTA
** * *
49381523 GTAACACAAATAACTTAAGAGCAATTGTATAACCAGTATGGACAACTCTAGAGTATCACAGAGAT
583 GTAATGCAAATAA-TTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGAT
* * * *
49381588 TAAATCAAAGGTAGTACAATAGAACAAAGGAAAACAGAATATAGCAGAACAAAACCAAATGGTAT
647 TTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTAT
* * *
49381653 AGAACAGAGTATAACTGAACAGA
712 AGAGCAGAGCAGAACTGAACAGA
* * * *
49381676 ACAGAACAAAAAGGAGTAGAGCAGAATAGAACATGTCTGTTTATGCAGGTGCAGTACTTTTCAAA
1 ACAGAACAAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAAA
49381741 CAGATTA-AATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAAATAGAGT
66 CAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACAC-AAAAATAGAGT
* * * * * *
49381805 TCTTCCACGAACTAATCCATCTAAAACATACCAAGACAGTCAT-TCGAGGTTGATACCACTAAAT
130 TCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTCG-GGTTGATACCACTAAAT
* * * ** * * *
49381869 GTAACACCTCAAACTTGACTTGGAAGTTTAATTCTAACTTGGACGAGTTACACTACTGCATTTAA
194 GTAACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTAA
* * *
49381934 AACTGATTTCTTTTCGAGATTTTAATTTTGAAAACCAAAAATTCATTTTTTTCAATTTAGGTGAT
259 AACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTTTCGATTTAGGTGAT
* * * * *
49381999 TTTGTAGCTTCGTGTTAGAAATTGACTAAAACAGACAAGATTAT-AGAAAGGAAAGCAAGGCAAA
324 TTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCA-AAAGGAAAGCAAGGCAAA
* * *
49382063 TCCAAGACAATTTACAAACCCAAAAGACCAGTTCGTAGTTATTTTAGTGTAAAACAATCCGAGCT
388 TCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAATCCGAGCT
* ** * * * *
49382128 CTCGTACGATGTCCAATCCTAAATCAGGTGTTTTACTGAACAAATGAAGGT-AGACAAATGGTGA
453 CCCGTACGACATCCGATCCTAAATCAGATGTTTTACTGAACAGATGAAGGTAAGACAAAGGGTGA
**
49382192 GTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAATAGAGCATACTATATAACTCGTA
518 GTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCGTA
* * * * *
49382257 GTAATGCAAATAATTGAAAAGCAGTTGTATATCTAGTGCGGTCAACTCTAGAGTATCACAGAGAT
583 GTAATGCAAATAATT-AAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGAT
* * *
49382322 TTTATCAAAGGTAGTGCAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTAC
647 TTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTAT
49382387 AGAGC-GAGCAGAACTGAACAGA
712 AGAGCAGAGCAGAACTGAACAGA
* * * * *** *
49382409 ACAGAACAAAACGAAGCAGAGCAGAATAGAACATGTAAGTTTATATGGGAGCAGTATTTTTCAAA
1 ACAGAACAAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAAA
* * * * * *
49382474 TAGATCAGAATACAGATTTATCAGAAACAGTCTTCCAAAACTCCGTTACACATAAAAATAGAG-T
66 CAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAATAGAGTT
* *
49382538 CTCCCCCGAACTCATCCAT-CTAAA-ACACTAAGAAAGTCATC-CTGGGTTGATACCACTAAATG
131 CTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTC-GGGTTGATACCACTAAATG
* * * *
49382600 TAACACCCCAAA-CTAGACTTGGAAGTTTAAGCCGAACTTGGATGAGTTACACCAAAGCATTGAA
195 TAACACCCCAAACCT-GACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTAA
* * * *
49382664 AATTGAGTTT-TTCTCGGGATTTTAATCTTGAAAACCAGAAATTCA-TTTTGTCGATTTAGGTGA
259 AACTGA-TTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTTTCGATTTAGGTGA
* ** *
49382727 TTTTGTAGTTTCATGTTAGAAATTGACTGATACAAACGACATTATCAAAAGGAAAGCAAGGCAAA
323 TTTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAAA
* * * * *
49382792 TCCAAGAAAATTTACAAACCCAAAAGAACAATTCGCAGTTATTTCAGTATAAAACAATTCGAGCT
388 TCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAATCCGAGCT
* ** * * * * * * *
49382857 CCCATACCCCATCTGATCCTAAATCAGGTATTTTTCCG-ACTAGATGAAAGTAAGACAAATGGTG
453 CCCGTACGACATCCGATCCTAAATCAGATGTTTTACTGAAC-AGATGAAGGTAAGACAAAGGGTG
* *
49382921 AGTTACCAAGCACTGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATGACTCGT
517 AGTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCGT
* ** * *
49382986 AGTAACGCAAATAACTTAAGAGCAGTTGTATAGTCAGTAGGGACAACTCTAGTGTATCACAGAGA
582 AGTAATGCAAATAA-TTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGA
* * * *
49383051 TTTAATCAAAGGTAATACAATAGAACAAAGCAAATCAGAATAGAGCAGAACAAAATCGAATGGTG
646 TTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTA
* * * ***
49383116 TAGAACATAACAGAAGAAAACAGA
711 TAGAGCAGAGCAGAACTGAACAGA
* ** *
49383140 ACAAAACGAAGTA-GAGCAGAGCAGAACATAACATGTATGTTTATGCAGGTGCAGTATTTTTCAA
1 ACAGAAC-AAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAA
* * * * * * * *
49383204 ACAGATTTGAAGGCAGATTTATTAGAAATAGTCTTTCCAAATTCCGTTACACATAAAAATAGAGT
65 ACAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAATAGAGT
*** *
49383269 TCTCCTTTGAACTCATCCATCCAAAACACATCAAGAAAGTCATCTCGGGTTGATACCACTAAATG
130 TCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTCGGGTTGATACCACTAAATG
* * *
49383334 TAACACCCCAAA-C---CC-AGAGGTTTAAGCCGAACTTGGACAAGTTACACCAATGCATTTAAA
195 TAACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTAAA
* * *
49383394 ACTGATATCTTTTTGGGATTTTAATTTTGAAAAGCCAGAAATTCATATTTTTCGATTTAGGTGAT
260 ACTGATTTCTTTTCGGGATTTTAATTTTGAAAA-CCAGAAATTCATTTTTTTCGATTTAGGTGAT
* * * ** * * *
49383459 TTTGTAGCTTCGTGTTAGAAATTGGCTAATGTGGATGAGATTATCAAAAGGAAAGTAAGGGAAAT
324 TTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAAAT
* * * * * * * *
49383524 CTAAGATAATTTACAAACCCAAAAGATCAGTTTGCAATTATGTTAGTGCAAAAAAAATTCCGAGC
389 CCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTG-TAAAACAA-TCCGAGC
* ** * * * * *
49383589 TTCTATACGACATTCGATCCTAAATAAGATGTTTTAATGAATAGATGAAGGTAAGACAAATGGTG
452 TCCCGTACGACATCCGATCCTAAATCAGATGTTTTACTGAACAGATGAAGGTAAGACAAAGGGTG
* * * * ** * *
49383654 GGTTACCAAGCACTGCGTAAAACCAAGCTCAAATACAAATAAATAGAACATACTATATATCTCGT
517 AGTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCGT
* * * * *
49383719 AGTAATGCAAATAATTGAATAGCAGTTGCATAACTACTATAGG-CAACTCTAGAGTATCACAGAG
582 AGTAATGCAAATAATT-AAGAGCAGTTGTATAACCAGTA-CGGACAACTCTAGAGTATCACAGAG
* * * * * * *
49383783 ATTTAATCAAAGGTACTACAACAGAAAAAAACAAAATAGAATAGAGCAAAACAGAACCGAATGGT
645 ATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGT
* *
49383848 ACAGAGCAGAACATAGCTGAATGGTACAGAGTAAAGTAGAACTTAATAGA
710 --ATAG-AG--C--A---G-A--G--C--AG--AACT-GAAC-----AGA
* * *
49383898 ATAGAA-AAAAATGGAGTAGAGCAAAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAA
1 ACAGAACAAAAA-GGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAA
* *** * * * ** * *
49383962 ATAGAACGGAATGTAAATTTATTAGAAATGGTCTTCCCAAACTCTATTACAAACAAAAATAGAGT
65 ACAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAATAGAGT
* *
49384027 TCTCCCCCGAACTCATCTATCCAAAACACACCAAGAAAGTTATCTCGGGTTGATACCACTAAATG
130 TCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTCGGGTTGATACCACTAAATG
* * * * *
49384092 TAACGCCCCAAACCTGACCTGAAAGTTTAAGCCAAACTTAGATGAGTTACACCAATGC-TTTGAA
195 TAACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTT-AA
* ** *
49384156 AACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAAAAATTTGTTTTTTGTTGATTTAGGTGA
259 AACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTT-TCGATTTAGGTGA
* * * ** * * * * *
49384221 TTTTTTTAGTTTTGTATTAGAAATCAACTGATATGGAAGAGATTATCAAAAGGAAAACACGGAAA
323 -TTTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAA
* * * * *
49384286 ATCCAAGACAATTTACAAACCCAAAAAATCAATTCGTAGTTATTTCAGTGTAAAATAATCTGAGC
387 ATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAATCCGAGC
** ** * *
49384351 TCCC-TACG-CTATTTGATCCTATGTCATATGTTTTCCTGAACAGATGAAGGTAA-ACAAAGGGT
452 TCCCGTACGAC-ATCCGATCCTAAATCAGATGTTTTACTGAACAGATGAAGGTAAGACAAAGGGT
* * * * *
49384413 GAGTTACCAAGCACTGCGTACAACCAGGCTCAAATATAAATAAGCAAAGCATACTATATAACTGG
516 GAGTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCG
49384478 TAGTAATGCAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAG
581 TAGTAATGCAAATAA-TTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAG
* *
49384543 ATTTAATCAAAGGTAGTACAATAGAACAAATCAAAACAGAATAGAGCAGAACAAAACCAAATGGT
645 ATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGT
*
49384608 ATAGAGCAGAGGAGAACTGAACAGA
710 ATAGAGCAGAGCAGAACTGAACAGA
* * * * * * *
49384633 ACAGAATAAAATGGAGCAAAGCAAAATAGAACATGTATGTTTATGCAAGTGAAGTATTTTTCAAA
1 ACAGAACAAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAAA
* *
49384698 CAG-TTCAGAATGCAGATTTATAAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAATAGAGT
66 CAGATT-AGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAATAGAGT
* *
49384762 TCTCCCCCGAGCTCATCCATCCAAAACACACCAAGAAAGTCATCTCGGGTTGGTACCACTAAATG
130 TCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTCGGGTTGATACCACTAAATG
* * * * *
49384827 TAA-ACCCCAAACCTGACCTAGAAGTTTAAGCCAAACTTGGATGAGTTACAACAATGCATTAAAA
195 TAACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTAAA
* *
49384891 ATTGATTTCTGTTT-GGGATTTTAATTTTGAAAACTAGAAATT--TGTTTTTTCGATTTAGGTGA
260 ACTGATTTCT-TTTCGGGATTTTAATTTTGAAAACCAGAAATTCAT-TTTTTTCGATTTAGGTGA
* *
49384953 TTTTGTAGTTTCATGTTAGAAATTGACTGATACGGACGAGATTATCCAAAGGAAAGCAAGGCAAA
323 TTTTGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAAA
* * *
49385018 TCCAAGCCAATTTACAAACCCAAAAGATCAATTCACAGTTATTTTAGTGTAAAACAATTCGAGCT
388 TCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAATCCGAGCT
* * * * * * * **
49385083 CCCGTACGCCATCCGATTCTAAATTAGATGTATTCCTGAACCGATGAAGGTAATACAAAGAATGA
453 CCCGTACGACATCCGATCCTAAATCAGATGTTTTACTGAACAGATGAAGGTAAGACAAAGGGTGA
** * * *
49385148 GTTACCAAGCACCATGTATAACCAGGCTCAAATACAAATTAGCATATCATACTATATAACAT-GT
518 GTTACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAAC-TCGT
* * * * *
49385212 AGTAACGCAAATAGTTTAAGAGCAATTGTATAACCAGTACGGACAACTCTAGAGTATCACGGGGA
582 AGTAATGCAAATA-ATTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGA
* * * * * ** * * *
49385277 TTTAATCAAAGGTAGTACAACAAAACAAAGTAAAATAGAATATAATAGAACAAAATCAAAAGGTA
646 TTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTA
* * * * * *
49385342 CAGAGCAGAGAAAAATTGAATAAA
711 TAGAGCAGAGCAGAACTGAACAGA
* * * * * *
49385366 ATAGAACAAAACGGAGCAAAGCA-ATACAGTACATGTATGTTTATACAGATGCAGTATTTTTCAA
1 ACAGAACAAAAAGGAGCAGAGCAGA-ACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAA
* * * *
49385430 ACATATCAGAATGCAGATTTATCAGAAACAATCTTACCAAACTCTGTTACACACAAAAATAGAGT
65 ACAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAATAGAGT
* ** *
49385495 TCTCCCCTGAACTCATCCATGTAAAACACACCAACAAAGTCATC
130 TCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATC
49385539 CTAGGTTGCT
Statistics
Matches: 3892, Mismatches: 604, Indels: 191
0.83 0.13 0.04
Matches are distributed among these distances:
726 4 0.00
727 89 0.02
728 279 0.07
729 282 0.07
730 534 0.14
731 347 0.09
732 308 0.08
733 718 0.18
734 466 0.12
735 229 0.06
736 7 0.00
738 1 0.00
740 5 0.00
741 3 0.00
743 2 0.00
744 1 0.00
747 1 0.00
748 1 0.00
749 1 0.00
750 3 0.00
752 3 0.00
753 4 0.00
755 1 0.00
756 3 0.00
757 2 0.00
758 179 0.05
759 3 0.00
760 175 0.04
761 41 0.01
762 26 0.01
763 83 0.02
764 91 0.02
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (734 bp):
ACAGAACAAAAAGGAGCAGAGCAGAACAGAACATGTATGTTTATGCAGGTGCAGTATTTTTCAAA
CAGATTAGAATGCAGATTTATCAGAAACAGTCTTCCCAAACTCTGTTACACACAAAAATAGAGTT
CTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCTCGGGTTGATACCACTAAATGT
AACACCCCAAACCTGACCTGGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTTAAAA
CTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTTTCGATTTAGGTGATTT
TGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATCAAAAGGAAAGCAAGGCAAATCC
AAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAATCCGAGCTCCC
GTACGACATCCGATCCTAAATCAGATGTTTTACTGAACAGATGAAGGTAAGACAAAGGGTGAGTT
ACCAAGCACCGCGTATAACCAGGCTCAAATACAAATAAGCAGAGCATACTATATAACTCGTAGTA
ATGCAAATAATTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGATTTAA
TCAAAGGTAGTACAATAGAACAAAGCAAAACAGAATAGAGCAGAACAAAACCGAATGGTATAGAG
CAGAGCAGAACTGAACAGA
Found at i:49383111 original size:20 final size:20
Alignment explanation
Indices: 49383081--49383159 Score: 54
Period size: 20 Copynumber: 4.0 Consensus size: 20
49383071 TAGAACAAAG
*
49383081 CAAATCAGAATAGAGCAGAA
1 CAAAACAGAATAGAGCAGAA
* * *
49383101 CAAAATC-GAATGGTGTAGAA
1 CAAAA-CAGAATAGAGCAGAA
* * * *
49383121 CATAACAGAAGAAAACAGAA
1 CAAAACAGAATAGAGCAGAA
49383141 CAAAAC-GAAGTAGAGCAGA
1 CAAAACAGAA-TAGAGCAGA
49383160 GCAGAACATA
Statistics
Matches: 41, Mismatches: 15, Indels: 6
0.66 0.24 0.10
Matches are distributed among these distances:
19 4 0.10
20 36 0.88
21 1 0.02
ACGTcount: A:0.54, C:0.14, G:0.22, T:0.10
Consensus pattern (20 bp):
CAAAACAGAATAGAGCAGAA
Found at i:49383853 original size:25 final size:25
Alignment explanation
Indices: 49383825--49383878 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
49383815 AAAATAGAAT
49383825 AGAGCAAAACAGAACCGAATGGTAC
1 AGAGCAAAACAGAACCGAATGGTAC
* * * *
49383850 AGAGCAGAACATAGCTGAATGGTAC
1 AGAGCAAAACAGAACCGAATGGTAC
49383875 AGAG
1 AGAG
49383879 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.17, G:0.28, T:0.11
Consensus pattern (25 bp):
AGAGCAAAACAGAACCGAATGGTAC
Found at i:49395225 original size:13 final size:13
Alignment explanation
Indices: 49395209--49395233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49395199 GAATGATTTA
49395209 TTGAAAATTTCGT
1 TTGAAAATTTCGT
49395222 TTGAAAATTTCG
1 TTGAAAATTTCG
49395234 ACGTTTGGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
TTGAAAATTTCGT
Found at i:49396632 original size:47 final size:47
Alignment explanation
Indices: 49396510--49396721 Score: 212
Period size: 47 Copynumber: 4.7 Consensus size: 47
49396500 GTTATAGGTG
* * ** *
49396510 TAACATGGTGCTAAGTGGATATACCA-GAATTACGCATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACG-GTTACATATATTGATTCAT
*
49396557 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
49396605 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* * * *
49396643 TAATGTGGTGCTAAGTGGATATGA-TACGGCTACATTTATTGATTCAT
1 TAACGTGGTGCTAAGTGGATAT-ACCACGGTTACATATATTGATTCAT
*
49396690 TAACGTGGTGCTAAGTGGATATACCACAGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
49396722 AACATGTAAC
Statistics
Matches: 135, Mismatches: 17, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
38 27 0.20
39 2 0.01
40 1 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 57 0.42
48 39 0.29
49 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
Found at i:49396660 original size:38 final size:38
Alignment explanation
Indices: 49396605--49396749 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 38
49396595 ATTGATTCAT
*
49396605 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* * *
49396643 TAATGTGGTGCTAAGTGGATATGATACGGCTACATTTATTGATTCAT-
1 TAACGTGGTGCTAAGTGG--AT-ATAC--C-ACAGTTA---A-ACATG
49396690 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
49396728 TAACGTGGTGCTAAGTGGATAT
1 TAACGTGGTGCTAAGTGGATAT
49396750 GCCATGGTTA
Statistics
Matches: 89, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
37 3 0.03
38 40 0.45
40 2 0.02
41 10 0.11
42 1 0.01
43 1 0.01
44 9 0.10
45 2 0.02
47 18 0.20
48 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
Found at i:49396665 original size:85 final size:85
Alignment explanation
Indices: 49396553--49396759 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
49396543 GCATATTGAT
49396553 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
49396618 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACAGTTAA
* ** * *
49396638 ACATGTAATGTGGTGCTAAGTGGATATGATACGGCTACATTTATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
49396703 AGTGGATATACCACAGTTAA
66 AGTGGATATACCACAGTTAA
*
49396723 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
49396760 TACATGTTAA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 111 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACAGTTAA
Found at i:49396765 original size:38 final size:38
Alignment explanation
Indices: 49396605--49396766 Score: 155
Period size: 38 Copynumber: 4.0 Consensus size: 38
49396595 ATTGATTCAT
49396605 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* ** *
49396643 TAATGTGGTGCTAAGTGGATATGATACGGCTACATTTATTGATTCAT-
1 TAACGTGGTGCTAAGTGG--AT-ATAC--C-ACGGTTA---A-ACATG
*
49396690 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
49396728 TAACGTGGTGCTAAGTGGATATGCCATGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
49396766 T
1 T
49396767 TAATTTGAAA
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
37 3 0.03
38 53 0.52
40 2 0.02
41 10 0.10
42 1 0.01
43 1 0.01
44 9 0.09
45 2 0.02
47 18 0.18
48 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:49399242 original size:62 final size:62
Alignment explanation
Indices: 49399176--49399356 Score: 213
Period size: 61 Copynumber: 2.9 Consensus size: 62
49399166 TGGCCAGGGT
* ** * *
49399176 ACACACCCGTGTCCCTGGTTGTGTGGTCTTAAATCATAAACAGTGGGTTACACGGCCTGGAC
1 ACACACCCATGTCCCTGGCCGTGTGGTCCTAAATCATAAACAGTGAGTTACACGGCCTGGAC
* * * *
49399238 ACACATCCATGT-CCTTGCCGATGTGGTCCTAAATCATAAAC-GTGAGTTACAAGGCTTGGAC
1 ACACACCCATGTCCCTGGCCG-TGTGGTCCTAAATCATAAACAGTGAGTTACACGGCCTGGAC
* * * * *
49399299 ACACACCTATGTCCTTGCCCGTGTGGTCCTAAATCATAAATAGTAAGTTACACGGCCT
1 ACACACCCATGTCCCTGGCCGTGTGGTCCTAAATCATAAACAGTGAGTTACACGGCCT
49399357 AGATACATGG
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
61 51 0.52
62 47 0.48
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (62 bp):
ACACACCCATGTCCCTGGCCGTGTGGTCCTAAATCATAAACAGTGAGTTACACGGCCTGGAC
Found at i:49399313 original size:61 final size:62
Alignment explanation
Indices: 49399196--49399356 Score: 220
Period size: 61 Copynumber: 2.6 Consensus size: 62
49399186 GTCCCTGGTT
* * *
49399196 GTGTGGTCTTAAATCATAAACAGTGGGTTACACGGCCTGGACACACATCCATGTCCTTG-CC
1 GTGTGGTCCTAAATCATAAACAGTGAGTTACAAGGCCTGGACACACATCCATGTCCTTGCCC
*
49399257 GATGTGGTCCTAAATCATAAAC-GTGAGTTACAAGGCTTGGACACACA-CCTATGTCCTTGCCC
1 G-TGTGGTCCTAAATCATAAACAGTGAGTTACAAGGCCTGGACACACATCC-ATGTCCTTGCCC
* * *
49399319 GTGTGGTCCTAAATCATAAATAGTAAGTTACACGGCCT
1 GTGTGGTCCTAAATCATAAACAGTGAGTTACAAGGCCT
49399357 AGATACATGG
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
60 2 0.02
61 51 0.58
62 35 0.40
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (62 bp):
GTGTGGTCCTAAATCATAAACAGTGAGTTACAAGGCCTGGACACACATCCATGTCCTTGCCC
Found at i:49409637 original size:16 final size:16
Alignment explanation
Indices: 49409613--49409662 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
49409603 TGGCTTAACC
*
49409613 TATGCTTGAATTTGGT
1 TATGTTTGAATTTGGT
*
49409629 TATGTTTGAATATGGT
1 TATGTTTGAATTTGGT
* *
49409645 TAAGTTT-ATTTTGGT
1 TATGTTTGAATTTGGT
49409660 TAT
1 TAT
49409663 AATTCTGCGT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 8 0.29
16 20 0.71
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (16 bp):
TATGTTTGAATTTGGT
Found at i:49411436 original size:46 final size:46
Alignment explanation
Indices: 49411369--49411547 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
49411359 GATATTTGGG
*
49411369 CGTCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
49411415 CGTCCGAACTCGTTGAGTTGAGTCCGAGTT-TGTGAAATGTAACTAG-GAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAA
*
49411464 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * *
49411509 TGCCCGAGCTCGTTGACTTGAGTTCGAGTTCGCTTATGG
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49411548 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
44 1 0.01
45 5 0.05
46 62 0.57
47 6 0.06
48 29 0.27
49 5 0.05
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:49416439 original size:26 final size:27
Alignment explanation
Indices: 49416401--49416576 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
49416391 TTAAATTGTA
49416401 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
49416428 TGCAC-AAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
49416453 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGATA-TGACTATGT
* *
49416481 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* *
49416509 AGCACTAAGTGTGCGAT-TGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
49416535 AGCACTAAGTGTGCGAGATGATTATAT
1 AGCACTAAGTGTGCGATATGACTATGT
*
49416562 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49416577 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
26 46 0.37
27 57 0.46
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Found at i:49416540 original size:81 final size:80
Alignment explanation
Indices: 49416402--49416550 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 80
49416392 TAAATTGTAA
* *
49416402 GCACTAAGTGTGCGATATGACTATGTTGCACAAGTGTGCGAAATGAATATGATGCACTAAGTGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACAAGTGTGCGAAATGAATACGATGCACTAAGTGTG
49416467 CGAATTGACCATGCG
66 CGAATTGACCATGCG
* * *
49416482 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TATGACTATGTAGCAC-AAGTGTGCGAAATGAATACGAT-GCACTAAGT
49416545 GTGCGA
63 GTGCGA
49416551 GATGATTATA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
80 16 0.26
81 36 0.59
82 9 0.15
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACAAGTGTGCGAAATGAATACGATGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:49423724 original size:13 final size:13
Alignment explanation
Indices: 49423706--49423730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49423696 TAATGGTATA
49423706 TTGAATCCATGAC
1 TTGAATCCATGAC
49423719 TTGAATCCATGA
1 TTGAATCCATGA
49423731 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:49424312 original size:27 final size:27
Alignment explanation
Indices: 49424275--49424452 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
49424265 TTAAATTGTA
49424275 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * * *
49424302 TTGCACCAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
49424329 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
49424356 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
49424384 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
49424411 TAGCACTAAGTGTGCGAGATGATTATA
1 TAGCACTAAGTGTGCGATATGACTATG
*
49424438 TAGCACTGAGTGTGC
1 TAGCACTAAGTGTGC
49424453 AGGCTCAATA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.82
28 22 0.17
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:49424396 original size:82 final size:81
Alignment explanation
Indices: 49424277--49424427 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
49424267 AAATTGTATA
* *
49424277 GCACTAAGTGTGCGATATGACTATGTTGCACCAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACCAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49424341 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* * ** *
49424358 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACCAAGTGTGCGAAATGAATACGTAGCACTAAGTG
49424423 TGCGA
65 TGCGA
49424428 GATGATTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 45 0.74
83 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACCAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49424444 original size:82 final size:81
Alignment explanation
Indices: 49424273--49424452 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
49424263 GATTAAATTG
* *
49424273 TATAGCACTAAGTGTGCGATATGACTATGTTGCACCAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACCAAGTGTGCGAAATGAATACGATGCACTAA
49424338 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * * ** *
49424354 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACCAAGTGTGCGAAATGAATACGAT-GCACT
**
49424418 AAGTGTGCGAGA-TGATTA
64 AAGTGTGCGA-ATTGACCA
*
49424436 TATAGCACTGAGTGTGC
1 TATAGCACTAAGTGTGC
49424453 AGGCTCAATA
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
81 17 0.21
82 62 0.77
83 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACCAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.