Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 155 of 259
Found at i:50812398 original size:29 final size:28
Alignment explanation
Indices: 50812362--50812439 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50812352 TCATGAGATT
*
50812362 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
50812392 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
50812419 TGGCACTAAGTGTGCGCAGTT
1 -GGCACTAAGTGTGCG-AGTT
50812440 GATTATTAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
27 5 0.11
29 35 0.80
30 4 0.09
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:50820399 original size:29 final size:28
Alignment explanation
Indices: 50820351--50820423 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
50820341 TCATGAGATT
* *
50820351 GGCATTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
50820381 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
50820408 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
50820424 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:50822028 original size:18 final size:17
Alignment explanation
Indices: 50822000--50822033 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50821990 GGCTTTAACC
50822000 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
50822017 CATTATCAGAATCAGAA
1 CATTA-CAGAATAAGAA
50822034 TCAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:50822030 original size:6 final size:6
Alignment explanation
Indices: 50822021--50822189 Score: 112
Period size: 6 Copynumber: 27.3 Consensus size: 6
50822011 AAGAAACATT
* * * * *
50822021 ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATTAAA ATCAAA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* *
50822070 ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * * *
50822120 ATCAGA ACCAGA ATCAAA ATTCGGTA AT-AGA ATCAGA ATCAGT ATCAGGT
1 ATCAGA ATCAGA ATCAGA A-TCAG-A ATCAGA ATCAGA ATCAGA ATCA-GA
*
50822170 ACCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
50822190 GTGAATGCAA
Statistics
Matches: 130, Mismatches: 20, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
5 8 0.06
6 100 0.77
7 16 0.12
8 6 0.05
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:50822053 original size:19 final size:19
Alignment explanation
Indices: 50822029--50822161 Score: 78
Period size: 19 Copynumber: 6.8 Consensus size: 19
50822019 TTATCAGAAT
*
50822029 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* * *
50822048 CAGAATTAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
* *
50822065 TCAAAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
50822085 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
50822110 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
50822127 CCAGAATCAAAATTC-GGTAA
1 -CAGAATCAGAA-TCAGGTAA
*
50822147 TAGAATCAGAATCAG
1 CAGAATCAGAATCAG
50822162 TATCAGGTAC
Statistics
Matches: 86, Mismatches: 14, Indels: 28
0.67 0.11 0.22
Matches are distributed among these distances:
17 3 0.03
18 23 0.27
19 37 0.43
20 4 0.05
21 1 0.01
23 1 0.01
25 17 0.20
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:50822091 original size:25 final size:25
Alignment explanation
Indices: 50822063--50822126 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
50822053 TTAAAATCAA
* *
50822063 AATCAAAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
50822088 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
50822113 AATCAGAATCAGAA
1 AATCAGAATCAGAA
50822127 CCAGAATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:50822098 original size:37 final size:37
Alignment explanation
Indices: 50822021--50822098 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
50822011 AAGAAACATT
* * * *
50822021 ATCAGAATCAGAATCAGAATCAGGTGACAGAATTAAA
1 ATCAAAATCAAAATCAGAATCAGGTAACAGAATCAAA
* *
50822058 ATCAAAATCAAAATCAGAATTAGGTAACAGAATCAGA
1 ATCAAAATCAAAATCAGAATCAGGTAACAGAATCAAA
50822095 ATCA
1 ATCA
50822099 GTATCAGGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.19
Consensus pattern (37 bp):
ATCAAAATCAAAATCAGAATCAGGTAACAGAATCAAA
Found at i:50822105 original size:31 final size:31
Alignment explanation
Indices: 50822070--50822167 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
50822060 CAAAATCAAA
50822070 ATCAGAATTAGGTAACAGAATCAGAATCAGT
1 ATCAGAATTAGGTAACAGAATCAGAATCAGT
* * *
50822101 ATCAGGTAA-CA-G-AATCAGAATCAGAACCAGA
1 ATCA-G-AATTAGGTAA-CAGAATCAGAATCAGT
* * *
50822132 ATCAAAATTCGGTAATAGAATCAGAATCAGT
1 ATCAGAATTAGGTAACAGAATCAGAATCAGT
50822163 ATCAG
1 ATCAG
50822168 GTACCAGAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
29 2 0.04
30 2 0.04
31 41 0.80
32 4 0.08
33 2 0.04
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.20
Consensus pattern (31 bp):
ATCAGAATTAGGTAACAGAATCAGAATCAGT
Found at i:50822126 original size:37 final size:37
Alignment explanation
Indices: 50822085--50822167 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
50822075 AATTAGGTAA
** **
50822085 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAAAATTCGGTAACAGAATCAGAAT
* *
50822122 CAGAACCAGAATCAAAATTCGGTAATAGAATCAGAAT
1 CAGAATCAGAATCAAAATTCGGTAACAGAATCAGAAT
*
50822159 CAGTATCAG
1 CAGAATCAG
50822168 GTACCAGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.46, C:0.17, G:0.18, T:0.19
Consensus pattern (37 bp):
CAGAATCAGAATCAAAATTCGGTAACAGAATCAGAAT
Found at i:50822186 original size:62 final size:61
Alignment explanation
Indices: 50822023--50822188 Score: 224
Period size: 62 Copynumber: 2.7 Consensus size: 61
50822013 GAAACATTAT
* * * * * *
50822023 CAGAATCAGAATCAGAATCAGGTGACAGAATTAAAATCAAAATCAAAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGT-ACAGAATCAGAATCAGAACCAAAATCAAAATTAGGTAA
* *
50822085 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAAAATTCGGTAA
1 CAGAATCAGAATCAGTATCAGGT-ACAGAATCAGAATCAGAACCAAAATCAAAATTAGGTAA
*
50822147 TAGAATCAGAATCAGTATCAGGTACCAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTA-CAGAATCAGAATCAGAA
50822189 TGTGAATGCA
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
61 1 0.01
62 92 0.99
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (61 bp):
CAGAATCAGAATCAGTATCAGGTACAGAATCAGAATCAGAACCAAAATCAAAATTAGGTAA
Found at i:50822350 original size:27 final size:26
Alignment explanation
Indices: 50822308--50822359 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
50822298 GCGAGGCTGC
*
50822308 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
50822334 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
50822360 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50822661 original size:27 final size:27
Alignment explanation
Indices: 50822605--50822878 Score: 261
Period size: 27 Copynumber: 10.2 Consensus size: 27
50822595 GGGCACAATG
* * * * *
50822605 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
50822631 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
50822658 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
50822685 GTAATTCTACCCTATAAGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
50822711 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
50822739 GTAATTCTACCCTACAGGGGTA-TTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
50822765 GTAATTCTACCTTACTA-GGGTATTTTA
1 GTAATTCTACCCTAC-AGGGGTATTTCA
* *
50822792 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* ** * **
50822819 GTAATTTTA-CAAACTAGGGGTGTTTTG
1 GTAATTCTACCCTAC-AGGGGTATTTCA
* *
50822846 GTAATTCTATCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
50822873 GTAATT
1 GTAATT
50822879 TCACGATCGA
Statistics
Matches: 207, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
26 41 0.20
27 163 0.79
28 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:50822823 original size:80 final size:80
Alignment explanation
Indices: 50822631--50822878 Score: 295
Period size: 81 Copynumber: 3.1 Consensus size: 80
50822621 AGGTATCTCG
*
50822631 GTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
*
50822696 CTATAAGGGTATTGC
66 CTATAAGGGTATTGA
**
50822711 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTCGGTAATTCTAC
1 G-TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
* *
50822775 CTTACT-AGGGTATTTTA
65 CCTA-TAAGGGTA-TTGA
* * ** * * *
50822792 GTAATTCTACCCTACAAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTGTTTTGGTAATTCTAT
1 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTAC-AGGGGTATTTCGGTAATTCTAC
* *
50822856 CCTATAGGGGTATTTCA
65 CCTATAAGGGTA-TTGA
50822873 GTAATT
1 GTAATT
50822879 TCACGATCGA
Statistics
Matches: 144, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
79 3 0.02
80 62 0.43
81 79 0.55
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
CTATAAGGGTATTGA
Found at i:50822851 original size:134 final size:134
Alignment explanation
Indices: 50822604--50822878 Score: 331
Period size: 134 Copynumber: 2.1 Consensus size: 134
50822594 AGGGCACAAT
*
50822604 GGTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACC
1 GGTAATTCTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACC
* * **
50822669 CTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTGCGATAATTCTACCCTACAGGGGTA
66 CTACAAGGGTATTTCAGTAATTCTACCAAATAAGGGTATTGCGATAATTCTACCCTACAGGGGTA
50822734 TTTC
131 TTTC
* * * *
50822738 GGTAATTCTACCCTACAGGGGTAT-TCGGTAATTCTACCTTACTA-GGGTATTTTAGTAATTCTA
1 GGTAATTCTACCCCACA-AGGTATCTCGGTAATTCCACCCTAC-AGGGGTATTTTAGTAATTCTA
* * * * ** * * *
50822801 CCCTACAAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTGTTTTGGTAATTCTATCCTATAGGG
64 CCCTACAAGGGTATTTCAGTAATTCTACCAAA-TAAGGGTATTGCGATAATTCTACCCTACAGGG
50822865 GTATTTC
128 GTATTTC
*
50822872 AGTAATT
1 GGTAATT
50822879 TCACGATCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
133 2 0.02
134 111 0.93
135 6 0.05
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (134 bp):
GGTAATTCTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACC
CTACAAGGGTATTTCAGTAATTCTACCAAATAAGGGTATTGCGATAATTCTACCCTACAGGGGTA
TTTC
Found at i:50822879 original size:54 final size:54
Alignment explanation
Indices: 50822605--50822878 Score: 288
Period size: 54 Copynumber: 5.1 Consensus size: 54
50822595 GGGCACAATG
* * * * * *
50822605 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
50822658 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
50822711 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTCG
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* ** * *
50822765 GTAATTCTACCTTACTA-GGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTAC-AGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* ** * * * *
50822819 GTAATTTTA-CAAACTAGGGGTGTTTTGGTAATTCTATCCTATAGGGGTATTTCA
1 GTAATTCTACCCTAC-AGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
50822873 GTAATT
1 GTAATT
50822879 TCACGATCGA
Statistics
Matches: 188, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
53 64 0.34
54 124 0.66
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:50823003 original size:27 final size:27
Alignment explanation
Indices: 50822900--50823066 Score: 110
Period size: 27 Copynumber: 6.2 Consensus size: 27
50822890 GGTAAAACGG
**
50822900 TAATTTTTTAAATCGAGGGTACTTT-GA
1 TAATTTTACAAATCGAGGGTA-TTTCGA
** *
50822927 TAATTTTACATGTCGAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGA
* *
50822954 TAATTTTGCAAA-CTAAGGGTATTTCGA
1 TAATTTTACAAATC-GAGGGTATTTCGA
* * *
50822981 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCGA
* * * * *
50823008 TAATTTTATAAACCAATGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCGA
* *
50823035 TAATTTTACAACT-GAGGATATTTC-A
1 TAATTTTACAAATCGAGGGTATTTCGA
50823060 GTAATTT
1 -TAATTT
50823067 GGTAAACTAA
Statistics
Matches: 107, Mismatches: 27, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
25 3 0.03
26 14 0.13
27 86 0.80
28 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGA
Found at i:50823073 original size:53 final size:54
Alignment explanation
Indices: 50822899--50823073 Score: 183
Period size: 54 Copynumber: 3.3 Consensus size: 54
50822889 GGGTAAAACG
* * * ** *
50822899 GTAATTTTTTAAATCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTGTAAACCAAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
* * * **
50822953 ATAATTTTGCAAACTAAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTGTAAACCAAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTCA
* * * *
50823007 GTAATTTTATAAACCAATGGTACTTTGGTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTGTAAACCAAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
*
50823060 GTAATTTGGTAAAC
1 GTAATTTTGTAAAC
50823074 TAAAGTATTC
Statistics
Matches: 97, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
53 25 0.26
54 69 0.71
55 3 0.03
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
GTAATTTTGTAAACCAAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
Found at i:50830043 original size:46 final size:46
Alignment explanation
Indices: 50829925--50830050 Score: 191
Period size: 46 Copynumber: 2.7 Consensus size: 46
50829915 AACTAGGCAT
*
50829925 CCGAACTCGTTTAA-TTGAGTCCAAGTTCACTTATGGATGCGAACGC
1 CCGAACTCG-TTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
50829971 CCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
50830017 CCGAGCTCGTTAAGTTGAGTCTGAGTTCGCTTAT
1 CCGAACTCGTTAAGTTGAGTCCGAGTTCACTTAT
50830051 AGGAAGGTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
45 4 0.05
46 70 0.95
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:50835169 original size:25 final size:25
Alignment explanation
Indices: 50835141--50835208 Score: 59
Period size: 25 Copynumber: 2.7 Consensus size: 25
50835131 TTCTGTACAT
* *
50835141 GTATACTCATACGAGCTGTTAATTA
1 GTATACTCATACGAGCTGTAAATCA
* * *
50835166 GTATGCTC-TCATGAGCTATAAATCA
1 GTATACTCAT-ACGAGCTGTAAATCA
50835191 GTA-AGCTCATACGAGCTG
1 GTATA-CTCATACGAGCTG
50835209 AGAATCGGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
24 1 0.03
25 30 0.94
26 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
GTATACTCATACGAGCTGTAAATCA
Found at i:50835224 original size:50 final size:49
Alignment explanation
Indices: 50835146--50835254 Score: 119
Period size: 50 Copynumber: 2.2 Consensus size: 49
50835136 TACATGTATA
** * * * *
50835146 CTCATACGAGCTGTTAATTAGTATGCTCTCATGAGCTATAAATCAGTAAG
1 CTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCT-GAAATCAGTAAG
* * *
50835196 CTCATACGAGCTGAGAATCGGTAAGCTCTCGCGAGCTGCAATCAGTAAG
1 CTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGAAATCAGTAAG
*
50835245 CTTATACGAG
1 CTCATACGAG
50835255 ATGGGAGTCG
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
49 19 0.39
50 30 0.61
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (49 bp):
CTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGAAATCAGTAAG
Found at i:50835243 original size:24 final size:25
Alignment explanation
Indices: 50835186--50835254 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
50835176 ATGAGCTATA
*
50835186 AATCAGTAAGCTCATACGAGCTGAG
1 AATCAGTAAGCTCATACGAGCTGAC
* *
50835211 AATCGGTAAGCTC-TCGCGAGCTG-C
1 AATCAGTAAGCTCAT-ACGAGCTGAC
*
50835235 AATCAGTAAGCTTATACGAG
1 AATCAGTAAGCTCATACGAG
50835255 ATGGGAGTCG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
24 16 0.44
25 20 0.56
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (25 bp):
AATCAGTAAGCTCATACGAGCTGAC
Found at i:50836535 original size:25 final size:25
Alignment explanation
Indices: 50836488--50836535 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
50836478 CATCTAAAGT
*
50836488 TGTTATATAGTATAGATATGTGTAG
1 TGTTATATAGTATAGATAGGTGTAG
*
50836513 TGTTATATA-TATTATATAGGTGT
1 TGTTATATAGTA-TAGATAGGTGT
50836536 TTATGGGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (25 bp):
TGTTATATAGTATAGATAGGTGTAG
Found at i:50840241 original size:27 final size:27
Alignment explanation
Indices: 50840210--50840421 Score: 110
Period size: 27 Copynumber: 7.9 Consensus size: 27
50840200 GGCAAATCAG
50840210 TCATTTTACTTTATAGGGGTATTAT-AA
1 TCATTTTACTTTATAGGGGTATT-TCAA
** * * * *
50840237 TCATTTTACCCTATTGTGCTATTTCGA
1 TCATTTTACTTTATAGGGGTATTTCAA
* *
50840264 TCATTTTACTTTATGGGGGTATTTCAG
1 TCATTTTACTTTATAGGGGTATTTCAA
* * ***
50840291 TGATTTTACCTTAT-GGGGATATTTTGG
1 TCATTTTACTTTATAGGGG-TATTTCAA
** * *
50840318 TCATTTTACCCTAAAGGGGTATTTCGA
1 TCATTTTACTTTATAGGGGTATTTCAA
* * * **
50840345 TCATTTAAC--TATGGGGGCATTTCGG
1 TCATTTTACTTTATAGGGGTATTTCAA
** ***
50840370 TCATTTTACCCTATAGGGGTATTTTGG
1 TCATTTTACTTTATAGGGGTATTTCAA
*
50840397 TCATTTTAAC-CTATAGGGGTATTTC
1 TCATTTT-ACTTTATAGGGGTATTTC
50840422 GGTTACCATT
Statistics
Matches: 147, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
25 20 0.14
26 5 0.03
27 116 0.79
28 6 0.04
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.44
Consensus pattern (27 bp):
TCATTTTACTTTATAGGGGTATTTCAA
Found at i:50840379 original size:52 final size:54
Alignment explanation
Indices: 50840209--50840424 Score: 181
Period size: 54 Copynumber: 4.0 Consensus size: 54
50840199 GGGCAAATCA
** * * * * * *
50840209 GTCATTTTACTTTATAGGGGTATTAT-AATCATTTTACCCTATTGTGCTATTTCG
1 GTCATTTTACCCTAAAGGGGTATT-TCGATCATTTTAACCTATGGGGGTATTTCG
* ** ** * * *
50840263 ATCATTTTACTTTATGGGGGTATTTC-AGTGATTTT-ACCTTATGGGGATATTTTG
1 GTCATTTTACCCTAAAGGGGTATTTCGA-TCATTTTAACC-TATGGGGGTATTTCG
*
50840317 GTCATTTTACCCTAAAGGGGTATTTCGATCA-TTTAA-CTATGGGGGCATTTCG
1 GTCATTTTACCCTAAAGGGGTATTTCGATCATTTTAACCTATGGGGGTATTTCG
* * * *
50840369 GTCATTTTACCCTATAGGGGTATTTTGGTCATTTTAACCTATAGGGGTATTTCG
1 GTCATTTTACCCTAAAGGGGTATTTCGATCATTTTAACCTATGGGGGTATTTCG
50840423 GT
1 GT
50840425 TACCATTTCG
Statistics
Matches: 133, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
52 40 0.30
53 13 0.10
54 79 0.59
55 1 0.01
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTAAAGGGGTATTTCGATCATTTTAACCTATGGGGGTATTTCG
Found at i:50840394 original size:79 final size:80
Alignment explanation
Indices: 50840206--50840422 Score: 276
Period size: 79 Copynumber: 2.7 Consensus size: 80
50840196 GTAGGGCAAA
* * ** * * * *
50840206 TCAGTCATTTTACTTTATAGGGGTATTATAATCATTTTACCCTATTGTGCTATTTCGATCATTTT
1 TCAGTCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCGATCATTTA
*
50840271 ACTTTATGGGGGTATT
66 AC-TTATGGGGGCATT
* *
50840287 TCAGTGATTTTACCTTAT-GGGGATATTTTGGTCATTTTACCCTAAAGGGGTATTTCGATCATTT
1 TCAGTCATTTTACCTTATAGGGG-TATTTTGGTCATTTTACCCTATAGGGGTATTTCGATCATTT
50840351 AAC-TATGGGGGCATT
65 AACTTATGGGGGCATT
* * *
50840366 TCGGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTAACCTATAGGGGTATTTCG
1 TCAGTCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCG
50840423 GTTACCATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
79 58 0.49
80 8 0.07
81 52 0.44
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.44
Consensus pattern (80 bp):
TCAGTCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCGATCATTTA
ACTTATGGGGGCATT
Found at i:50844402 original size:53 final size:52
Alignment explanation
Indices: 50844244--50844411 Score: 194
Period size: 53 Copynumber: 3.2 Consensus size: 52
50844234 TGGATAAGTT
* *
50844244 GTAGAATTGTTGAAATACCCTGTAGGGTAGAATTA-TCAAAATACCCCTGCAGG
1 GTAGAATTGTTGAAATACCCTGTA-GGTAGAATTACT-GAAATACCCCTGTAGG
* * *
50844297 GTAGAATTATTGAAATACCCCTATAGGATAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTGTTGAAATA-CCCTGTAGG-TAGAATTACTGAAATACCCCTGTAGG
* * * * *
50844351 ATAGAATTGCTGAAATACCGTTGTAGGTAGAAATACTGAAATACCCTTGTAGG
1 GTAGAATTGTTGAAATACC-CTGTAGGTAGAATTACTGAAATACCCCTGTAGG
50844404 GTAGAATT
1 GTAGAATT
50844412 ACCGAGATAC
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
53 50 0.52
54 47 0.48
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (52 bp):
GTAGAATTGTTGAAATACCCTGTAGGTAGAATTACTGAAATACCCCTGTAGG
Found at i:50844424 original size:27 final size:27
Alignment explanation
Indices: 50844255--50844441 Score: 189
Period size: 27 Copynumber: 7.0 Consensus size: 27
50844245 TAGAATTGTT
*
50844255 GAAATA-CCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * **
50844281 AAAATACCCCTGCAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
50844308 GAAATACCCCTATAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
50844335 GAAATACCCCTGTAGGATAGAATTGCT
1 GAAATACCCCTGTAGGGTAGAATTACC
** * *
50844362 GAAATACCGTTGTA-GGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
50844388 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
50844415 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
50844442 ATTTTGCCCC
Statistics
Matches: 136, Mismatches: 23, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 27 0.20
27 109 0.80
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:50845233 original size:27 final size:26
Alignment explanation
Indices: 50845181--50845240 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50845171 CCACATATAT
*
50845181 ATATCTGTTCTGGTGGCGTAGCCACA
1 ATATCTGTTCTGGTGACGTAGCCACA
* * *
50845207 ATATCTGTTTCTGGTGACTTCGTCACA
1 ATATCTG-TTCTGGTGACGTAGCCACA
50845234 ATATCTG
1 ATATCTG
50845241 GCAGATTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACGTAGCCACA
Found at i:50847398 original size:361 final size:361
Alignment explanation
Indices: 50846734--50847457 Score: 1394
Period size: 361 Copynumber: 2.0 Consensus size: 361
50846724 GCGTATTTGG
50846734 TGTAGCTCCGAATGTGGCTGAGTATTGGTTAGAAGCCATAGAGCGGATTATGGATGATCTGGACT
1 TGTAGCTCCGAATGTGGCTGAGTATTGGTTAGAAGCCATAGAGCGGATTATGGATGATCTGGACT
50846799 GCTCTGTGGAGCAAAAGCTAAAGGGAGCCATATCGTTACTCAAGGATGAGGCTTATGTGGTGGCT
66 GCTCTGTGGAGCAAAAGCTAAAGGGAGCCATATCGTTACTCAAGGATGAGGCTTATGTGGTGGCT
* * *
50846864 CACGGTGAGAGATGGAACTCCTGCTGATAATGTGACCTGGGAGCTATTTAAGACAGCCGTCAAAG
131 CACGGTGAGAGATGGAACTCCTGCTGACAATGTAACCTAGGAGCTATTTAAGACAGCCGTCAAAG
50846929 GAAAGTATGTTGGGGCTAGTTACGTAGACGCTCACTGGAAAGAATTTCTGAACTTGGTCTAAGGG
196 GAAAGTATGTTGGGGCTAGTTACGTAGACGCTCACTGGAAAGAATTTCTGAACTTGGTCTAAGGG
50846994 AGTAAGTCAGTGGCTGAGTATGAGTCTGAGTTTCTGAGACTAAGTCAGTATGCTTCTGGGATTGT
261 AGTAAGTCAGTGGCTGAGTATGAGTCTGAGTTTCTGAGACTAAGTCAGTATGCTTCTGGGATTGT
50847059 CGCTATAGAGTATGAGTGTAGCGTACGCTTCGAGGA
326 CGCTATAGAGTATGAGTGTAGCGTACGCTTCGAGGA
50847095 TGTAGCTCCGAATGTGGCTGAGTATTGGTTAGAAGCCATAGAGCGGATTATGGATGATCTGGACT
1 TGTAGCTCCGAATGTGGCTGAGTATTGGTTAGAAGCCATAGAGCGGATTATGGATGATCTGGACT
50847160 GCTCTGTGGAGCAAAAGCTAAAGGGAGCCATATCGTTACTCAAGGATGAGGCTTATGTGGTGGCT
66 GCTCTGTGGAGCAAAAGCTAAAGGGAGCCATATCGTTACTCAAGGATGAGGCTTATGTGGTGGCT
*
50847225 CACGGTGAGAGATGGAACTCCTGCTGACAATGTAACCTAGGAGCTGTTTAAGACAGCCGTCAAAG
131 CACGGTGAGAGATGGAACTCCTGCTGACAATGTAACCTAGGAGCTATTTAAGACAGCCGTCAAAG
*
50847290 GAAAGTATGTTGGGGCTAGTTACGTAGACGCTCGCTGGAAAGAATTTCTGAACTTGGTCTAAGGG
196 GAAAGTATGTTGGGGCTAGTTACGTAGACGCTCACTGGAAAGAATTTCTGAACTTGGTCTAAGGG
*
50847355 AGTAAGTCAGTGGCTGAGTATGAGTCTGAGTTTCTGAGACTAAGTCGGTATGCTTCTGGGATTGT
261 AGTAAGTCAGTGGCTGAGTATGAGTCTGAGTTTCTGAGACTAAGTCAGTATGCTTCTGGGATTGT
50847420 CGCTATAGAGTATGAGTGTAGCGTACGCTTCGAGGA
326 CGCTATAGAGTATGAGTGTAGCGTACGCTTCGAGGA
50847456 TG
1 TG
50847458 GTTTGAGAGA
Statistics
Matches: 357, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
361 357 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (361 bp):
TGTAGCTCCGAATGTGGCTGAGTATTGGTTAGAAGCCATAGAGCGGATTATGGATGATCTGGACT
GCTCTGTGGAGCAAAAGCTAAAGGGAGCCATATCGTTACTCAAGGATGAGGCTTATGTGGTGGCT
CACGGTGAGAGATGGAACTCCTGCTGACAATGTAACCTAGGAGCTATTTAAGACAGCCGTCAAAG
GAAAGTATGTTGGGGCTAGTTACGTAGACGCTCACTGGAAAGAATTTCTGAACTTGGTCTAAGGG
AGTAAGTCAGTGGCTGAGTATGAGTCTGAGTTTCTGAGACTAAGTCAGTATGCTTCTGGGATTGT
CGCTATAGAGTATGAGTGTAGCGTACGCTTCGAGGA
Found at i:50869566 original size:46 final size:46
Alignment explanation
Indices: 50869512--50869682 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
50869502 TGGTTGAGCA
*
50869512 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAACG
* * * * *
50869558 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAA--A--CG
* * *
50869605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAACG
* *
50869651 -CCTGAGCTCGTTGAGTTGAGTCCCAGTTCACT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACT
50869683 TAGGGGCGGG
Statistics
Matches: 102, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 55 0.54
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAACG
Found at i:50869668 original size:93 final size:93
Alignment explanation
Indices: 50869509--50869679 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
50869499 GGATGGTTGA
*
50869509 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAACGTCCAAACTCGTTGAGT
*
50869574 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCCAGTTCGTGAGATGTAACTAG
* * * * *
50869602 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAACGTCC-AAACTCGTTGAG
50869666 TTGAGTCCCAGTTC
65 TTGAGTCCCAGTTC
50869680 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCAAACGTCCAAACTCGTTGAGT
TGAGTCCCAGTTCGTGAGATGTAACTAG
Found at i:50873918 original size:44 final size:45
Alignment explanation
Indices: 50873869--50873965 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
50873859 TAGAATTACC
* *
50873869 GAAATACCCTGTA-GGCAAAATTACCGAAATAGCCCTCTAGGGTA
1 GAAATACCCTGTAGGGCAAAATTACCGAAATACCCCTCTAGGATA
* * * *
50873913 GAAATACCCTGTAGGGTAGAATTATCGAAATACCCCTTTAGGATA
1 GAAATACCCTGTAGGGCAAAATTACCGAAATACCCCTCTAGGATA
*
50873958 GAATTACC
1 GAAATACC
50873966 GAAATACACT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 13 0.29
45 32 0.71
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (45 bp):
GAAATACCCTGTAGGGCAAAATTACCGAAATACCCCTCTAGGATA
Found at i:50873927 original size:18 final size:19
Alignment explanation
Indices: 50873894--50873933 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
50873884 CAAAATTACC
50873894 GAAATAGCCCTCTAGGGTA
1 GAAATAGCCCTCTAGGGTA
*
50873913 GAAATA-CCCTGTAGGGTA
1 GAAATAGCCCTCTAGGGTA
50873931 GAA
1 GAA
50873934 TTATCGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (19 bp):
GAAATAGCCCTCTAGGGTA
Found at i:50873942 original size:26 final size:26
Alignment explanation
Indices: 50873913--50874038 Score: 104
Period size: 27 Copynumber: 5.0 Consensus size: 26
50873903 CTCTAGGGTA
*
50873913 GAAATACCCTGTAGGGTAGAATTATC
1 GAAATACCCTGTAGGGTAGAATTACC
* *
50873939 GAAATACCCCTTTAGGATAGAATTACC
1 GAAATA-CCCTGTAGGGTAGAATTACC
* *
50873966 GAAATACACTTGTAGGGTAGAAATA-C
1 GAAATAC-CCTGTAGGGTAGAATTACC
50873992 ------CCCTGTAGGGTAGAATTACC
1 GAAATACCCTGTAGGGTAGAATTACC
* * *
50874012 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCC-TGTAGGGTAGAATTACC
50874039 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 11, Indels: 19
0.72 0.10 0.17
Matches are distributed among these distances:
19 15 0.19
20 2 0.03
26 11 0.14
27 51 0.65
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
GAAATACCCTGTAGGGTAGAATTACC
Found at i:50873983 original size:72 final size:72
Alignment explanation
Indices: 50873858--50874038 Score: 226
Period size: 73 Copynumber: 2.5 Consensus size: 72
50873848 TGGATAAGTT
50873858 GTAGAATTACCGAAATA-CCCTGTAGGCAAAATTACCGAAATAGCCCTCTAGGGTAGAAATA-CC
1 GTAGAATTACCGAAATACCCCTGTAGGCAAAATTACCGAAATAGCCCTCTAGGGTAGAAATACCC
50873921 CTGTAGG
66 CTGTAGG
* * * *
50873928 GTAGAATTATCGAAATACCCCTTTAGG-ATAGAATTACCGAAATA-CACTTGTAGGGTAGAAATA
1 GTAGAATTACCGAAATACCCCTGTAGGCA-A-AATTACCGAAATAGC-CCTCTAGGGTAGAAATA
50873991 CCCCTGTAGG
63 CCCCTGTAGG
* * * *
50874001 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCCTGT-AGGCAAAATTACC
50874039 ATTTTGCCCC
Statistics
Matches: 95, Mismatches: 9, Indels: 11
0.83 0.08 0.10
Matches are distributed among these distances:
70 17 0.18
71 10 0.11
72 28 0.29
73 36 0.38
74 3 0.03
75 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (72 bp):
GTAGAATTACCGAAATACCCCTGTAGGCAAAATTACCGAAATAGCCCTCTAGGGTAGAAATACCC
CTGTAGG
Found at i:50873990 original size:19 final size:19
Alignment explanation
Indices: 50873966--50874006 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
50873956 TAGAATTACC
*
50873966 GAAATACACTTGTAGGGTA
1 GAAATACACCTGTAGGGTA
*
50873985 GAAATACCCCTGTAGGGTA
1 GAAATACACCTGTAGGGTA
50874004 GAA
1 GAA
50874007 TTACCGAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.22
Consensus pattern (19 bp):
GAAATACACCTGTAGGGTA
Found at i:50873992 original size:46 final size:46
Alignment explanation
Indices: 50873939--50874034 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 46
50873929 TAGAATTATC
*
50873939 GAAATACCCCTTTAGGATAGAATTACCGAAATACACTTGTAGGGTA
1 GAAATACCCCTGTAGGATAGAATTACCGAAATACACTTGTAGGGTA
* * * *
50873985 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA
1 GAAATACCCCTGTAGGATAGAATTACCGAAATACACTTGTAGGGTA
50874031 -AAAT
1 GAAAT
50874035 TACCATTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 4 0.09
46 41 0.91
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (46 bp):
GAAATACCCCTGTAGGATAGAATTACCGAAATACACTTGTAGGGTA
Found at i:50874038 original size:73 final size:71
Alignment explanation
Indices: 50873858--50874038 Score: 224
Period size: 72 Copynumber: 2.5 Consensus size: 71
50873848 TGGATAAGTT
* *
50873858 GTAGAATTACCGAAATACCC-TGTAGGCAAAATTACCGAAATAGCCCTCTAGGGTAGAAATACCC
1 GTAGAATTACCGAAATACCCTTGTGGGTAAAATTACCGAAATAGCCCTCTAGGGTAGAAATACCC
50873922 TGTAGG
66 TGTAGG
* * * * *
50873928 GTAGAATTATCGAAATACCCCTT-TAGGATAGAATTACCGAAATA-CACTTGTAGGGTAGAAATA
1 GTAGAATTACCGAAATA-CCCTTGT-GGGTAAAATTACCGAAATAGC-CCTCTAGGGTAGAAATA
50873991 CCCCTGTAGG
63 -CCCTGTAGG
*
50874001 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCTTGT-GGGTAAAATTACC
50874039 ATTTTGCCCC
Statistics
Matches: 93, Mismatches: 12, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
70 16 0.17
71 5 0.05
72 36 0.39
73 36 0.39
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (71 bp):
GTAGAATTACCGAAATACCCTTGTGGGTAAAATTACCGAAATAGCCCTCTAGGGTAGAAATACCC
TGTAGG
Found at i:50874719 original size:26 final size:25
Alignment explanation
Indices: 50874676--50874726 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
50874666 CTCGCTGCAA
*
50874676 TCTGGTGGCCTCGCCACATATATCTT
1 TCTGGTGACCTCGCCACA-ATATCTT
* *
50874702 TCTGGTGACTTCGTCACAATATCTT
1 TCTGGTGACCTCGCCACAATATCTT
50874727 GCAGCCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (25 bp):
TCTGGTGACCTCGCCACAATATCTT
Found at i:50875961 original size:52 final size:53
Alignment explanation
Indices: 50875769--50875982 Score: 213
Period size: 52 Copynumber: 4.1 Consensus size: 53
50875759 AATCAATCAT
* * * * * * * *
50875769 TTTACCTTACAGGGGTATTACAATTATTTTACCCTACA-AGGTATTAT-AGTCA
1 TTTACCCTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATT-TCGGTCA
* * *
50875821 TTTACCCTATAAGGGTATTATAG-TCATTTTACCTTATAGGGGTATTTCGGTCA
1 TTTACCCTATAGGGGTATT-TCGATCATTTTACCCTATAGGGGTATTTCGGTCA
* *
50875874 TTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTAT-GGAGGTATTTCGGTCA
1 -TTTACCCTATAGGGGTATTTCGATCATTTTACCCTATAGG-GGTATTTCGGTCA
* * *
50875928 TTTATCCTAT-GGGGTGTTTCGATCATTTTACCCTATAGGGGTATTTCGATCA
1 TTTACCCTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCA
50875980 TTT
1 TTT
50875983 TAGACCACAA
Statistics
Matches: 136, Mismatches: 19, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
52 67 0.49
53 25 0.18
54 44 0.32
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (53 bp):
TTTACCCTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCA
Found at i:50875974 original size:27 final size:27
Alignment explanation
Indices: 50875764--50875984 Score: 213
Period size: 27 Copynumber: 8.3 Consensus size: 27
50875754 GGGCAAATCA
* * * *
50875764 ATCATTTTACCTTACAGGGGTATTACA
1 ATCATTTTACCCTATAGGGGTATTTCG
* * * *
50875791 ATTATTTTACCCTACA-AGGTATTATAG
1 ATCATTTTACCCTATAGGGGTATT-TCG
* *
50875818 -TCA-TTTACCCTATAAGGGTATTATAG
1 ATCATTTTACCCTATAGGGGTATT-TCG
*
50875844 -TCATTTTACCTTATAGGGGTATTTCG
1 ATCATTTTACCCTATAGGGGTATTTCG
* *
50875870 GTCATTTTACCCTATAGGGGTATTTTG
1 ATCATTTTACCCTATAGGGGTATTTCG
*
50875897 GTCATTTTACCCTAT-GGAGGTATTTCG
1 ATCATTTTACCCTATAGG-GGTATTTCG
* * *
50875924 GTCA-TTTATCCTAT-GGGGTGTTTCG
1 ATCATTTTACCCTATAGGGGTATTTCG
50875949 ATCATTTTACCCTATAGGGGTATTTCG
1 ATCATTTTACCCTATAGGGGTATTTCG
50875976 ATCATTTTA
1 ATCATTTTA
50875985 GACCACAAAT
Statistics
Matches: 167, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
25 21 0.13
26 45 0.27
27 101 0.60
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (27 bp):
ATCATTTTACCCTATAGGGGTATTTCG
Found at i:50876413 original size:7 final size:7
Alignment explanation
Indices: 50876403--50876495 Score: 59
Period size: 7 Copynumber: 12.9 Consensus size: 7
50876393 TGATATAAAA
50876403 TATATAT
1 TATATAT
50876410 TATATAT
1 TATATAT
50876417 TATATTAACT
1 TATA-T-A-T
50876427 TCATAT-T
1 T-ATATAT
50876434 TA-AGTAT
1 TATA-TAT
50876441 TAATATAT
1 T-ATATAT
*
50876449 AATATAT
1 TATATAT
*
50876456 AATATA-
1 TATATAT
50876462 T-TATAT
1 TATATAT
50876468 TATTATAT
1 TA-TATAT
50876476 TATATAT
1 TATATAT
* *
50876483 AATATAA
1 TATATAT
50876490 TATATA
1 TATATA
50876496 AAACATAAAG
Statistics
Matches: 70, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
5 5 0.07
6 3 0.04
7 42 0.60
8 12 0.17
9 2 0.03
10 3 0.04
11 3 0.04
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (7 bp):
TATATAT
Found at i:50876468 original size:27 final size:27
Alignment explanation
Indices: 50876438--50876494 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
50876428 CATATTTAAG
*
50876438 TATTAATATATAATATATAATATATTA
1 TATTAATATATAATATATAATATAATA
* *
50876465 TATTATTATATTATATATAATATAATA
1 TATTAATATATAATATATAATATAATA
50876492 TAT
1 TAT
50876495 AAAACATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TATTAATATATAATATATAATATAATA
Found at i:50876496 original size:7 final size:7
Alignment explanation
Indices: 50876441--50876496 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
50876431 ATTTAAGTAT
50876441 TAATATA
1 TAATATA
50876448 TAATATA
1 TAATATA
50876455 TAATATA
1 TAATATA
*
50876462 TTATAT-
1 TAATATA
*
50876468 TATTATA
1 TAATATA
*
50876475 TTATATA
1 TAATATA
50876482 T-A-ATA
1 TAATATA
50876487 TAATATA
1 TAATATA
50876494 TAA
1 TAA
50876497 AACATAAAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 6 0.15
7 31 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TAATATA
Found at i:50877704 original size:22 final size:22
Alignment explanation
Indices: 50877664--50877731 Score: 93
Period size: 22 Copynumber: 3.0 Consensus size: 22
50877654 CATTCTATTA
*
50877664 TTAGCACGTTAAGTGCTCTCTGT
1 TTAGCAC-TTTAGTGCTCTCTGT
50877687 TTAGCACATTT-GTGCTCTCTGT
1 TTAGCAC-TTTAGTGCTCTCTGT
*
50877709 ATAGCACTTTAGTGCTCTCTGT
1 TTAGCACTTTAGTGCTCTCTGT
50877731 T
1 T
50877732 CGTTTGTGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
21 3 0.08
22 28 0.70
23 9 0.22
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (22 bp):
TTAGCACTTTAGTGCTCTCTGT
Found at i:50892752 original size:23 final size:23
Alignment explanation
Indices: 50892726--50892771 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
50892716 TATGTATATG
*
50892726 AACCAAGCAATACATTGAAATAA
1 AACCAACCAATACATTGAAATAA
50892749 AACCAACCAATACATTGAAATAA
1 AACCAACCAATACATTGAAATAA
50892772 GGAAAGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.57, C:0.20, G:0.07, T:0.17
Consensus pattern (23 bp):
AACCAACCAATACATTGAAATAA
Found at i:50894066 original size:11 final size:11
Alignment explanation
Indices: 50894050--50894074 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50894040 GGAACTTGAA
50894050 AATGTATGTGT
1 AATGTATGTGT
50894061 AATGTATGTGT
1 AATGTATGTGT
50894072 AAT
1 AAT
50894075 TATATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (11 bp):
AATGTATGTGT
Found at i:50894671 original size:20 final size:19
Alignment explanation
Indices: 50894646--50894687 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
50894636 TTATTATATA
50894646 TATTAT-ATTATATAATTGAT
1 TATTATAATTAT-TAATTG-T
50894666 TATTATAATTATTAATTGT
1 TATTATAATTATTAATTGT
50894685 TAT
1 TAT
50894688 GGTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATTATAATTATTAATTGT
Found at i:50895178 original size:24 final size:23
Alignment explanation
Indices: 50895138--50895182 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
50895128 ATTTATTTAC
50895138 TTATTATTTAAGAAATAATAATTA
1 TTATTATTTAAGAAAT-ATAATTA
*
50895162 TTATTA-TTAAGTTAATATAAT
1 TTATTATTTAAG-AAATATAAT
50895183 AATATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
TTATTATTTAAGAAATATAATTA
Found at i:50896333 original size:45 final size:45
Alignment explanation
Indices: 50896283--50896371 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
50896273 ACTGTTATTG
*
50896283 TTACCATTACTGTTACCGATTC-GACACTTTGTGTGTCGAATACTA
1 TTACCATTACTGTTACAGATTCAG-CACTTTGTGTGTCGAATACTA
*
50896328 TTACCATTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACT
1 TTACCATTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACT
50896372 GTCACTGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
TTACCATTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTA
Found at i:50905924 original size:47 final size:49
Alignment explanation
Indices: 50905851--50905998 Score: 196
Period size: 47 Copynumber: 3.0 Consensus size: 49
50905841 GCTTTATCAT
*
50905851 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTA-
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAC
50905899 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAG-CCTTTTATC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA-C
* * *
50905948 ATAAATGGGGCATAAGCCCTTTATCATAACTGAGGCATAAGCCCTTTTAC
1 ATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCCCTTTTAC
50905998 A
1 A
50905999 CTTCCTCCAT
Statistics
Matches: 90, Mismatches: 4, Indels: 10
0.87 0.04 0.10
Matches are distributed among these distances:
47 29 0.32
48 15 0.17
49 21 0.23
50 18 0.20
51 7 0.08
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAC
Found at i:50905957 original size:25 final size:24
Alignment explanation
Indices: 50905851--50905996 Score: 190
Period size: 25 Copynumber: 6.0 Consensus size: 24
50905841 GCTTTATCAT
*
50905851 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
50905876 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50905899 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50905923 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
50905946 TCATAAATGGGGCATAAGCCCTTTATC
1 --ATAACTGGGGCATAAGCCCTTT-TA
*
50905973 ATAACTGAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50905997 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 6, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
23 25 0.23
24 35 0.32
25 43 0.39
26 5 0.05
27 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:50906070 original size:20 final size:20
Alignment explanation
Indices: 50906045--50906111 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
50906035 TTATGAATAC
50906045 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
50906065 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
50906085 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
50906105 ACCATGT
1 ATCATGT
50906112 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:50906076 original size:11 final size:11
Alignment explanation
Indices: 50906045--50906100 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
50906035 TTATGAATAC
50906045 ATCATGTGCAT
1 ATCATGTGCAT
*
50906056 ATCA--TACAT
1 ATCATGTGCAT
50906065 ATCATGTGCAT
1 ATCATGTGCAT
*
50906076 ATCA--TACAT
1 ATCATGTGCAT
*
50906085 GTCATGTGCAT
1 ATCATGTGCAT
50906096 ATCAT
1 ATCAT
50906101 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:50909180 original size:6 final size:6
Alignment explanation
Indices: 50909169--50909196 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
50909159 TAAATTTGGG
50909169 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
50909197 TGTAGAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:50920684 original size:12 final size:12
Alignment explanation
Indices: 50920667--50920698 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
50920657 ATCTAGGTAA
50920667 GGCCAATGTGAT
1 GGCCAATGTGAT
50920679 GGCCAATGTGAT
1 GGCCAATGTGAT
50920691 GGCCAATG
1 GGCCAATG
50920699 CACTGAGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (12 bp):
GGCCAATGTGAT
Found at i:50930517 original size:68 final size:68
Alignment explanation
Indices: 50930407--50930576 Score: 198
Period size: 68 Copynumber: 2.5 Consensus size: 68
50930397 GAAAGTATGG
* * * * *
50930407 CATCATATTGTGTAAGACCATAGCTGGACTACGACAACATATGAAGTCT-GTAAGGACAGTAAAC
1 CATCATATTGTGTAAGACCATAGCTGGGCTATGGCAAAATATGAAGT-TAGTAAGGACAGGAAAC
50930471 ATGA
65 ATGA
* * *
50930475 CATCATATTGTGTATGACCATAGCTGGGCTATGGCAAAATATGAAGTTAGTCAGGATAGGAAACA
1 CATCATATTGTGTAAGACCATAGCTGGGCTATGGCAAAATATGAAGTTAGTAAGGACAGGAAACA
50930540 TGA
66 TGA
* * * * * *
50930543 CAACTTATAGTGTAAGGCCATAGTTAGGCTATGG
1 CATCATATTGTGTAAGACCATAGCTGGGCTATGG
50930577 TAGCATATAA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
67 1 0.01
68 85 0.99
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (68 bp):
CATCATATTGTGTAAGACCATAGCTGGGCTATGGCAAAATATGAAGTTAGTAAGGACAGGAAACA
TGA
Found at i:50937737 original size:3 final size:3
Alignment explanation
Indices: 50937729--50937778 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
50937719 CACTTATGTA
* * * *
50937729 ATC ATC ATC ATC ATC ATC ACC ATC ACC ATC ACC ATC ATC ATT ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
50937777 AT
1 AT
50937779 TTTCTTCTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (3 bp):
ATC
Found at i:50939054 original size:24 final size:24
Alignment explanation
Indices: 50939016--50939062 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
50939006 TTTTAAGCAA
50939016 TAAAAATAATTTTTTTAAATAATT
1 TAAAAATAATTTTTTTAAATAATT
*
50939040 TAAAAA-AATTATTTTTAATTAAT
1 TAAAAATAATT-TTTTTAAATAAT
50939063 GATTTTAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TAAAAATAATTTTTTTAAATAATT
Found at i:50939343 original size:26 final size:27
Alignment explanation
Indices: 50939314--50939367 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
50939304 CTAATTTGGC
*
50939314 AATAGTTTTGA-AAAGTG-TTGTGAAAA
1 AATACTTTTGAGAAA-TGCTTGTGAAAA
*
50939340 AATACTTTTGAGAAATGCTTTTGAAAA
1 AATACTTTTGAGAAATGCTTGTGAAAA
50939367 A
1 A
50939368 TTTGGTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.35
Consensus pattern (27 bp):
AATACTTTTGAGAAATGCTTGTGAAAA
Found at i:50939572 original size:28 final size:30
Alignment explanation
Indices: 50939540--50939605 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
50939530 ATTATAACTT
50939540 ATTTTTAATA-TTTTAA-T-ATATAATATTA
1 ATTTTTAATATTTTTAAGTAAT-TAATATTA
*
50939568 ATTTTAAATATTTTTAAGTAATTAATATTA
1 ATTTTTAATATTTTTAAGTAATTAATATTA
50939598 ATTATTTA
1 ATT-TTTA
50939606 TTAAATTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 9 0.28
29 6 0.19
30 12 0.38
31 5 0.16
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (30 bp):
ATTTTTAATATTTTTAAGTAATTAATATTA
Found at i:50944392 original size:44 final size:44
Alignment explanation
Indices: 50944342--50944431 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
50944332 GTTGAAATAA
* * **
50944342 AATAGAATTTGTGCTAATTGTACATTTAGAAA-TAATTACAATTT
1 AATAGAAGTTGTGATAATTACACATTTA-AAAGTAATTACAATTT
* *
50944386 AATAGAAGTTGTGATAATTACATATTTAAAAGTAATTAGAATTT
1 AATAGAAGTTGTGATAATTACACATTTAAAAGTAATTACAATTT
50944430 AA
1 AA
50944432 ATTACAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.08
44 36 0.92
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.39
Consensus pattern (44 bp):
AATAGAAGTTGTGATAATTACACATTTAAAAGTAATTACAATTT
Found at i:50945073 original size:20 final size:19
Alignment explanation
Indices: 50945016--50945076 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
50945006 ACTTAAACTT
*
50945016 TTTTTTAAAATTATA-AAA
1 TTTTTTAAAATAATATAAA
* *
50945034 ATATTTAAAATAAGGT-TAAA
1 TTTTTTAAAATAA--TATAAA
50945054 TTTTTTAAAATAATTATAAA
1 TTTTTTAAAATAA-TATAAA
50945074 TTT
1 TTT
50945077 GTAAAAAAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
18 10 0.30
19 1 0.03
20 22 0.67
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (19 bp):
TTTTTTAAAATAATATAAA
Found at i:50945386 original size:37 final size:37
Alignment explanation
Indices: 50945335--50945410 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
50945325 ATTAAAGAAT
* *
50945335 GTGTATAAAGTATTTTTTTACATGTGTAGTCTAAAAA
1 GTGTATAAAGTATTTTCTTACATGTGTAGCCTAAAAA
* *
50945372 GTGTATCAATTATTTTCTTACATGTGTAGCCTAAAAA
1 GTGTATAAAGTATTTTCTTACATGTGTAGCCTAAAAA
50945409 GT
1 GT
50945411 TAAAATAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (37 bp):
GTGTATAAAGTATTTTCTTACATGTGTAGCCTAAAAA
Found at i:50954334 original size:17 final size:18
Alignment explanation
Indices: 50954308--50954341 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50954298 TTTTTGTTTA
50954308 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
50954325 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
50954342 ATACTTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:50954910 original size:20 final size:21
Alignment explanation
Indices: 50954869--50954910 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
50954859 GACCTATTTT
*
50954869 GTTCATTAATTATTTTTAAGA
1 GTTCATTAATTATTTATAAGA
50954890 GTTC-TTAATT-TTTATAGAGA
1 GTTCATTAATTATTTATA-AGA
50954910 G
1 G
50954911 GGTGGTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (21 bp):
GTTCATTAATTATTTATAAGA
Found at i:50961759 original size:21 final size:21
Alignment explanation
Indices: 50961733--50961774 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
50961723 ACGACGATTC
*
50961733 AGCAAGTGTGAAATTTCGGTT
1 AGCAAGTGTGAAATTTAGGTT
50961754 AGCAAGTGTGAAATTTAGGTT
1 AGCAAGTGTGAAATTTAGGTT
50961775 GAACCTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (21 bp):
AGCAAGTGTGAAATTTAGGTT
Found at i:50964614 original size:31 final size:31
Alignment explanation
Indices: 50964561--50964634 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
50964551 GGGCCACACA
*
50964561 GGCGTGT-AGGCCCACACAGGCATGTCACATG
1 GGCGTGTGA-GCCTACACAGGCATGTCACATG
* *
50964592 GGCTTGTGAGCCTACACGGGCATGTCACATG
1 GGCGTGTGAGCCTACACAGGCATGTCACATG
50964623 GGCGTGTGAGCC
1 GGCGTGTGAGCC
50964635 CATTTTTCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 37 0.97
32 1 0.03
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.19
Consensus pattern (31 bp):
GGCGTGTGAGCCTACACAGGCATGTCACATG
Found at i:50972709 original size:15 final size:14
Alignment explanation
Indices: 50972687--50972728 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
50972677 GAGATTGGAG
50972687 AGGGGATTTTCGGC
1 AGGGGATTTTCGGC
*
50972701 AGAGGGATTTTAGG-
1 AG-GGGATTTTCGGC
*
50972715 TGGGGATTTTCGGC
1 AGGGGATTTTCGGC
50972729 TTTCGGGGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 10 0.43
14 3 0.13
15 10 0.43
ACGTcount: A:0.17, C:0.10, G:0.43, T:0.31
Consensus pattern (14 bp):
AGGGGATTTTCGGC
Found at i:50974016 original size:20 final size:20
Alignment explanation
Indices: 50973993--50974031 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
50973983 TAAACATGGT
50973993 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
50974013 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50974032 TGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:50974112 original size:23 final size:23
Alignment explanation
Indices: 50974083--50974200 Score: 209
Period size: 23 Copynumber: 5.1 Consensus size: 23
50974073 AGGAAGTGTA
50974083 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
50974106 AAAGGGCTTATGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50974129 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50974152 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
50974175 AAAGGGCTTTTTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50974198 AAA
1 AAA
50974201 AGAGGTTAGG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 91 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50974453 original size:31 final size:31
Alignment explanation
Indices: 50974415--50974478 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
50974405 CGTTTACAGT
*
50974415 AAAGGCTTCTGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
50974446 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50974477 AA
1 AA
50974479 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50982043 original size:20 final size:20
Alignment explanation
Indices: 50982010--50982096 Score: 147
Period size: 20 Copynumber: 4.3 Consensus size: 20
50982000 ATTTTGATAA
* *
50982010 ACATGGTATATATGATATGC
1 ACATGATATGTATGATATGC
*
50982030 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50982050 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50982070 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50982090 ACATGAT
1 ACATGAT
50982097 GTAATCATAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50982057 original size:11 final size:11
Alignment explanation
Indices: 50982021--50982096 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
50982011 CATGGTATAT
50982021 ATGATATGCAC
1 ATGATATGCAC
* *
50982032 ATGACATG--T
1 ATGATATGCAC
50982041 ATGATATGCAC
1 ATGATATGCAC
*
50982052 ATGATATG--T
1 ATGATATGCAC
50982061 ATGATATGCAC
1 ATGATATGCAC
*
50982072 ATGATATG--T
1 ATGATATGCAC
50982081 ATGATATGCAC
1 ATGATATGCAC
50982092 ATGAT
1 ATGAT
50982097 GTAATCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50982066 original size:9 final size:9
Alignment explanation
Indices: 50982032--50982088 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
50982022 TGATATGCAC
*
50982032 ATGACATGT
1 ATGATATGT
*
50982041 ATGATATGCAC
1 ATGATATG--T
50982052 ATGATATGT
1 ATGATATGT
*
50982061 ATGATATGCAC
1 ATGATATG--T
50982072 ATGATATGT
1 ATGATATGT
50982081 ATGATATG
1 ATGATATG
50982089 CACATGATGT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 23 0.59
11 16 0.41
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:50982172 original size:24 final size:24
Alignment explanation
Indices: 50982145--50982221 Score: 129
Period size: 24 Copynumber: 3.2 Consensus size: 24
50982135 GGAGGAAGTG
50982145 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
50982169 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
50982192 TAAAAGGACTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
50982216 TAAAAG
1 TAAAAG
50982222 AGGGTAGGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
23 23 0.46
24 27 0.54
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:50982176 original size:23 final size:23
Alignment explanation
Indices: 50982147--50982219 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
50982137 AGGAAGTGTA
50982147 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50982170 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
50982193 AAAAGGACTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
50982217 AAA
1 AAA
50982220 AGAGGGTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50982469 original size:31 final size:31
Alignment explanation
Indices: 50982434--50982497 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
50982424 CGTTTACAGT
50982434 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
50982465 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50982496 AA
1 AA
50982498 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50984377 original size:5 final size:5
Alignment explanation
Indices: 50984369--50984393 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50984359 AAAATAAAAA
50984369 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
50984394 GGTTGATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:50990080 original size:2 final size:2
Alignment explanation
Indices: 50990073--50990100 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
50990063 ATGATGGATG
50990073 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
50990101 TTTTCCATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:50990942 original size:21 final size:21
Alignment explanation
Indices: 50990916--50991042 Score: 146
Period size: 21 Copynumber: 6.0 Consensus size: 21
50990906 AGAACATGCC
* *
50990916 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
50990937 AACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
* * *
50990958 AATATAAGCTCGTGAGTGCTG
1 AACAGAAGCTCGTGAGAGCTG
* *
50990979 AACATAAGCTCGTGAGTGCTG
1 AACAGAAGCTCGTGAGAGCTG
*
50991000 AACATAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
* * * *
50991021 AAGAGAAGTTTGTAAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
50991042 A
1 A
50991043 TCCACCCAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 94 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (21 bp):
AACAGAAGCTCGTGAGAGCTG
Found at i:50995997 original size:62 final size:62
Alignment explanation
Indices: 50995906--50996022 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 62
50995896 GTCACTGACT
* * *
50995906 GTGTGGTTCTATACCATAAACAGTAAGTTACACAGCCTAGGCACACACCCGTGTCTCCAGCC
1 GTGTGGTTCTATACCACAAACAGTAAGTTACACAGCCCAGACACACACCCGTGTCTCCAGCC
* * * ** *
50995968 GTGTGGTTTTATACCACAAGCAGTGAGTTACATTGCCCAGACACACACTCGTGTC
1 GTGTGGTTCTATACCACAAACAGTAAGTTACACAGCCCAGACACACACCCGTGTC
50996023 CGTTGCTCGT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 46 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (62 bp):
GTGTGGTTCTATACCACAAACAGTAAGTTACACAGCCCAGACACACACCCGTGTCTCCAGCC
Found at i:50999205 original size:20 final size:20
Alignment explanation
Indices: 50999180--50999225 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
50999170 ATTGGGCCTT
50999180 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
50999200 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
50999219 GCCCATA
1 GCCCATA
50999226 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:50999234 original size:19 final size:20
Alignment explanation
Indices: 50999192--50999235 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
50999182 CCATATTAAC
** *
50999192 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
50999212 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
50999231 ACAGT
1 ACAGT
50999236 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:51004032 original size:31 final size:32
Alignment explanation
Indices: 51003988--51004056 Score: 131
Period size: 31 Copynumber: 2.2 Consensus size: 32
51003978 TATGGATATT
51003988 ATTACCAATGTCCAATCCCAACTTGAACCAGG
1 ATTACCAATGTCCAATCCCAACTTGAACCAGG
51004020 ATTACC-ATGTCCAATCCCAACTTGAACCAGG
1 ATTACCAATGTCCAATCCCAACTTGAACCAGG
51004051 ATTACC
1 ATTACC
51004057 TAGATGGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.84
32 6 0.16
ACGTcount: A:0.33, C:0.32, G:0.12, T:0.23
Consensus pattern (32 bp):
ATTACCAATGTCCAATCCCAACTTGAACCAGG
Found at i:51005450 original size:20 final size:20
Alignment explanation
Indices: 51005421--51005458 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51005411 TTTATACATT
*
51005421 TATTTTTAGGAATTTATTCG
1 TATTTCTAGGAATTTATTCG
51005441 TATTTCTAGGAATTTATT
1 TATTTCTAGGAATTTATT
51005459 TGTACTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.55
Consensus pattern (20 bp):
TATTTCTAGGAATTTATTCG
Found at i:51008979 original size:126 final size:125
Alignment explanation
Indices: 51008793--51009059 Score: 324
Period size: 126 Copynumber: 2.1 Consensus size: 125
51008783 TACCGAATTT
* *
51008793 CCAAATACGAAATATTGCCTCATTTTAATTTAAGAAAACATCGATGAAATGTCAAAAGGATATTC
1 CCAAACACGAAATATTGCCTCATTTTAATTTAAGAAAACATCGACGAAATGTCAAAAGGATATTC
* *
51008858 CGTATCTTAGTCGAATGAAAAATCGAAACCCAGCACGAT-AGGACACGA-TCTCTCAAACTC
66 CATATCTTAGTCGAACGAAAAATCGAAACCCAGCACGATAAGG-CACGATTC-CTCAAACTC
* * * **
51008918 CCTAAACACGAAATATTGCCTCATTTTAATTTTAA-AAAGCATGGACGAAATTTTTAAAGGATAT
1 CC-AAACACGAAATATTGCCTCATTTTAA-TTTAAGAAAACATCGACGAAATGTCAAAAGGATAT
* * * * * **
51008982 TTCATATTTTAGTTGAACGAAAAATTGAAACCTAGCACGATAAGGCACGATTCCTTGAACTC
64 TCCATATCTTAGTCGAACGAAAAATCGAAACCCAGCACGATAAGGCACGATTCCTCAAACTC
*
51009044 CCAAACACAAAATATT
1 CCAAACACGAAATATT
51009060 TCCTTATGTT
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
125 15 0.12
126 96 0.79
127 10 0.08
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.27
Consensus pattern (125 bp):
CCAAACACGAAATATTGCCTCATTTTAATTTAAGAAAACATCGACGAAATGTCAAAAGGATATTC
CATATCTTAGTCGAACGAAAAATCGAAACCCAGCACGATAAGGCACGATTCCTCAAACTC
Found at i:51009206 original size:21 final size:23
Alignment explanation
Indices: 51009159--51009212 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
51009149 CATTCAAGAT
**
51009159 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
51009182 AAAATAATATAT-AAA-TAATTC
1 AAAATAATATATAAAACTAATTA
51009203 AAAAT-ATATA
1 AAAATAATATA
51009213 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 8 0.29
22 3 0.11
23 12 0.43
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:51009455 original size:23 final size:23
Alignment explanation
Indices: 51009389--51009455 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
51009379 TATAAGAAAA
*
51009389 ATAAT-AATA-AAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
51009409 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
51009432 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
51009455 A
1 A
51009456 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 11 0.28
24 5 0.13
25 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:51009455 original size:29 final size:31
Alignment explanation
Indices: 51009383--51009455 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 31
51009373 AACATATATA
* * *
51009383 AGAAAAATAATAATAAAAATAATATTAGTAT
1 AGAAATATAATAATAAAAATAATAATAGAAT
* *
51009414 ATAAATA-GA-AATAAAAAT-ATAATA-AAT
1 AGAAATATAATAATAAAAATAATAATAGAAT
51009441 AGAAATATAATAATA
1 AGAAATATAATAATA
51009456 GTAGAAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
27 8 0.24
28 6 0.18
29 13 0.39
30 1 0.03
31 5 0.15
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.27
Consensus pattern (31 bp):
AGAAATATAATAATAAAAATAATAATAGAAT
Found at i:51009462 original size:17 final size:15
Alignment explanation
Indices: 51009422--51009467 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
51009412 ATATAAATAG
*
51009422 AAATAAAAATATAAT
1 AAATAGAAATATAAT
51009437 AAATAGAAATATAAT
1 AAATAGAAATATAAT
51009452 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
51009468 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:51009477 original size:14 final size:13
Alignment explanation
Indices: 51009437--51009538 Score: 59
Period size: 14 Copynumber: 7.2 Consensus size: 13
51009427 AAAATATAAT
51009437 AAATAGA-AATATA
1 AAATAGATAA-ATA
*
51009450 ATAATAGTAGAAATA
1 A-AATAG-ATAAATA
51009465 TAAATAGATAAATA
1 -AAATAGATAAATA
51009479 AAATTAGATAAATA
1 AAA-TAGATAAATA
51009493 ATAATAGTATTAGAATA
1 A-AATAG-A-TA-AATA
51009510 ACAA-A-ATAAATA
1 A-AATAGATAAATA
51009522 TAAATAGA-AACATA
1 -AAATAGATAA-ATA
51009536 AAA
1 AAA
51009539 ATAATAGCAA
Statistics
Matches: 74, Mismatches: 2, Indels: 26
0.73 0.02 0.25
Matches are distributed among these distances:
12 6 0.08
13 13 0.18
14 30 0.41
15 12 0.16
16 6 0.08
17 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (13 bp):
AAATAGATAAATA
Found at i:51009496 original size:29 final size:30
Alignment explanation
Indices: 51009432--51009553 Score: 76
Period size: 29 Copynumber: 4.2 Consensus size: 30
51009422 AAATAAAAAT
51009432 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
51009462 AT-ATAAATAGATAA-ATAA-AATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
* * * * ** *
51009490 ATAAT-AATAGTATTAGAATAACAAAATAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
* * * *
51009519 AT-ATAAATAGAAACATAAAAATAATAGCA
1 ATAATAAATAGAAATATAATAATAGTAGAA
51009548 ATAATA
1 ATAATA
51009554 TATTAAATTA
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 43 0.62
30 7 0.10
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.26
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:51010083 original size:5 final size:5
Alignment explanation
Indices: 51010075--51010101 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
51010065 CTAATTTAAT
51010075 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
51010102 ATAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:51010726 original size:87 final size:87
Alignment explanation
Indices: 51010534--51010889 Score: 368
Period size: 88 Copynumber: 4.1 Consensus size: 87
51010524 TAATCTTCAG
* * * * *
51010534 TCTGCTCCACTACTGCTTAGGAAGATAACATTTGCAATTTTCAGCCTGTTTCTCC-ACTGCTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTAC-CCTACTGCTT-A
* **
51010598 GGGGATAAGGCTTACCATCTTCGA
64 GGGGGTAAGGCTTACTGTCTTCGA
* * * *
51010622 TCTGCTACACTACTGCTTAGGGAGATAATATCTGTAATTTTTAGCCTGTTACCCTACTACTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGG
*
51010687 GGGTAAGGCTTATTGTCTTCGA
66 GGGTAAGGCTTACTGTCTTCGA
* * * *
51010709 TCTGCTCCACTAATGCTTAGGGAGATAAGATCTTTAATCTTT-AGCATGTTACCCTACTGCTCAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTTCAGCCTGTTACCCTACTGCTTAG
* * *
51010773 GGAGTTAAGGCTCT-CTGTTTTTGA
65 GG-GGTAAGGCT-TACTGTCTTCGA
* * *
51010797 TCTGCTCCACTACTGTTTAGGG-G---GGATCTGT-ATTTTCCAGCCTATTACCCTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTGCTTAG
*
51010857 GGGGTTAAGGCTTGCTGTCTTCGA
65 GGGG-TAAGGCTTACTGTCTTCGA
*
51010881 TCTTCTCCA
1 TCTGCTCCA
51010890 TAACCGATAC
Statistics
Matches: 226, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
82 3 0.01
83 4 0.02
84 50 0.22
87 79 0.35
88 89 0.39
89 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGG
GGGTAAGGCTTACTGTCTTCGA
Found at i:51011110 original size:45 final size:45
Alignment explanation
Indices: 51010880--51011380 Score: 283
Period size: 45 Copynumber: 11.2 Consensus size: 45
51010870 GCTGTCTTCG
* * * * * *
51010880 ATCTTCTCCATAACCGATACATGGAGATAGGACTCACCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
** *
51010925 ATCTGCTCCATAGTAGATACATGGAGATAAGA-TCTGTAATTCTT-A
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATT-TTCA
* * ** *
51010970 GTTTGCTCCATAATCGATACATGGAGATAAGA-TCTGCAACTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
* * * * * * ***** **
51011015 ACCTACTCTC-TTG-CTACTTCA-GAGAGATAAGGCT-GGTGGCTAAA
1 ATCTGCTC-CATAGCCGA-TACATG-GAGATAAGACTCGCAATTTTCA
*
51011059 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
** *
51011104 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTATAATTCTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
* * * *
51011149 GTCTACTCCATAGCCGATACATGGAGATAAGAC-CTACAACTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
** * * * * ***** **
51011194 ATCTGCTCTTTTG-CTACTTCA-GAGAGATAAGGCT-GGTGGCTAAA
1 ATCTGCTCCATAGCCGA-TACATG-GAGATAAGACTCGCAATTTTCA
* * *
51011238 ATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
* *
51011283 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCCGTAATTCTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACT-CGCAATTTTCA
* * *
51011328 GTCTGCTTCATAGCCGATACATAGAGATAAGAC-CTGCAATTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
*
51011373 ACCTGCTC
1 ATCTGCTC
51011381 TCTTACTACT
Statistics
Matches: 337, Mismatches: 97, Indels: 44
0.71 0.20 0.09
Matches are distributed among these distances:
43 1 0.00
44 62 0.18
45 270 0.80
46 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
Found at i:51011191 original size:179 final size:179
Alignment explanation
Indices: 51010880--51011448 Score: 895
Period size: 179 Copynumber: 3.2 Consensus size: 179
51010870 GCTGTCTTCG
* * * * **
51010880 ATCTTCTCCATAACCGATACATGGAGATAGGACTCACCATTTTCGATCTGCTCCATAGTAGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * ** *
51010945 ATGGAGATAAGATCTGTAATTCTTAGTTTGCTCCATAATCGATACATGGAGATAAGATCTGCAAC
66 ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
*
51011010 TTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
131 TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
*
51011059 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCAATCTGCTCCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * *
51011124 ATGGAGATAAGATCTATAATTCTCAGTCTACTCCATAGCCGATACATGGAGATAAGACCTACAAC
66 ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
* *
51011189 TTTCAATCTGCTCTTTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
131 TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
*
51011238 ATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * * *
51011303 ATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCCGATACATAGAGATAAGACCTGCAAT
66 ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
* * *
51011368 TTTCAACCTGCTCTCTTACTACTTTAGAGAGATAAGGATGGTGGCTAAA
131 TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
*
51011417 ATCTGTTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
51011449 TCTGTAATTC
Statistics
Matches: 356, Mismatches: 34, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
179 356 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (179 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
Found at i:51011577 original size:133 final size:133
Alignment explanation
Indices: 51011283--51011624 Score: 390
Period size: 133 Copynumber: 2.6 Consensus size: 133
51011273 GCCATTTTCG
51011283 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAG-CGATAC
* * *
51011348 ATAGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTACTACTTTAGAGAGATAAGGATGGTGGC
65 ATAGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGGATGGTGGC
51011413 TAAA
130 TAAA
* * * * *
51011417 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTG-G-TACC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCGATACA
* * * * *
51011480 TCAGGAAGATAAGACTTG-TATCTTT-AACCTGCTCTTTTGCTACCTCAAAGAGATAAGGTTGGT
66 T-A-G-AGATAAGACCTGCAAT-TTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGGATGGT
51011543 GGCTAAA
127 GGCTAAA
* * * * * *
51011550 ATCTACTCCATAGCCGATACATAGAGATAAGA-CTCGCTATTTTTTA-TCTGCTCCATAGCCGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATC-CG-TAATTCTCAGTCTGCTTCATAG-CGAT
*
51011613 ACATGGAGATAA
63 ACATAGAGATAA
51011625 AATCTGTAAT
Statistics
Matches: 174, Mismatches: 25, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
131 4 0.02
132 3 0.02
133 87 0.50
134 75 0.43
135 1 0.01
136 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCGATACA
TAGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGGATGGTGGCT
AAA
Found at i:51011614 original size:178 final size:177
Alignment explanation
Indices: 51011417--51012167 Score: 1088
Period size: 178 Copynumber: 4.2 Consensus size: 177
51011407 GGTGGCTAAA
* * * *
51011417 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * * *
51011482 AGGAAGATAAGACTTGTATCTTTAACCTGCTCTTTTGCTACCTCAAAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* *
51011547 AAAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTT
131 AAAATCTACTCCATAGCCGATACAT-GAGATAAGACTCGCCATTTTTG
* *
51011595 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * * *
51011660 AGGAAGATAAGACTTGTATCTTCAACCTTCTCTCTTACTACCTCAGAGAGATAATGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
*
51011725 AAAATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTTTG
131 AAAATCTACTCCATAGCCGATACATG-AGATAAGACTCGCCATTTTTG
* * *
51011773 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * * **
51011838 AGGAATATAAGACTTGTATCGTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTAATGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
51011903 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
131 AAAATCTACTCCATAGCCGATACAT-GAGATAAGACTCGCCATTTTTG
* * * * * * * *
51011951 ACCTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTTTACTTCCTTACTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
*
51012016 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGTTACCTCAGAGAGATAAGGCTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * * * *
51012081 AAAATCTGCTCCATAGCCGAAACATTGAGATAAGACTTGCAATTTTCG
131 AAAATCTACTCCATAGCCGATACA-TGAGATAAGACTCGCCATTTTTG
* * *
51012129 ATATGCTCCATAGCTGATACATGGAGATAAGATCCGTAA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA
51012168 CTTTCAACCT
Statistics
Matches: 513, Mismatches: 57, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
177 1 0.00
178 510 0.99
179 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (177 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
AAAATCTACTCCATAGCCGATACATGAGATAAGACTCGCCATTTTTG
Found at i:51011645 original size:45 final size:45
Alignment explanation
Indices: 51011550--51011646 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
51011540 GGTGGCTAAA
* * *
51011550 ATCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAAACTCGCTAATTTTT
*
51011595 ATCTGCTCCATAGCCGATACATGGAGATAAAA-TCTG-TAATTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAAACTC-GCTAATTTTT
51011639 AGTCTGCT
1 A-TCTGCT
51011647 TCCCTGCTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 10 0.22
45 36 0.78
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAAACTCGCTAATTTTT
Found at i:51012202 original size:134 final size:134
Alignment explanation
Indices: 51012036--51012301 Score: 426
Period size: 134 Copynumber: 2.0 Consensus size: 134
51012026 GACTTGTATC
* * *
51012036 TTCAACCTGCTCTCTTGTTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGA
1 TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGA
* * *
51012101 -AACATTGAGATAAGACTTGCAATTTTCGATATGCTCCATAGCTGATACATGGAGATAAGATCCG
66 TAA-ATAGAGATAAGACTTGCAATATTCGATATGCTCCATAGCCGATACATGGAGATAAGATCCG
51012165 TAACT
130 TAACT
* *
51012170 TTCAACCTACTCTCTTGCTACTTCAGAGAGATAATGCTAGTGGCTAAAATCTGCTCCATAGCCGA
1 TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGA
* *
51012235 TAAATAGAGATAAGACTTGCCATATTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGT
66 TAAATAGAGATAAGACTTGCAATATTCGATATGCTCCATAGCCGATACATGGAGATAAGATCCGT
51012300 AA
131 AA
51012302 TTCTCAGTCT
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
134 119 0.98
135 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (134 bp):
TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGA
TAAATAGAGATAAGACTTGCAATATTCGATATGCTCCATAGCCGATACATGGAGATAAGATCCGT
AACT
Found at i:51012246 original size:356 final size:353
Alignment explanation
Indices: 51011423--51012337 Score: 943
Period size: 356 Copynumber: 2.6 Consensus size: 353
51011413 TAAAATCTGT
** ** * *
51011423 TCCATAGCCGATACATGGAGATAAGATCTGTAA-TTCTCAGTCTGCTTCCTTGGTACCTCAGGAA
1 TCCATAGCCGATACATGGAGATAAGATCCATAACTT-TCAACCTACTTCCTTGCTACCTCAGGAA
* * * * * * * * *
51011487 GATAAGACTTGTATCTTTAACCTGCTCTTTTGCTACCTCAA-AGAGATAAGGTTGGTGGCTAAAA
65 TATAAGACTAGTAGCGTAAACCTGCTCTCTAGC-ACAT-AAGAGAGATAAGGCT--TGGCTAAAA
* * * *
51011551 TCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACA
126 TCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGACCTGCTCCATAGCCGATACA
* * *
51011616 TGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCT
191 TAGAGATAAAATCTGTAATTTTTAGTCTACTTCCCTACTACCTCAGGAAGATAAGACTTGTATCT
* * * *
51011681 TCAACCTTCTCTCTTACTACCTCAGAGAGATAATGTTGGTGGCTAAAATCTGCTCCATAGCCGAT
256 TCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGAA
* * * *
51011746 ACATGAAGATAAGACTCGCCATTTTTGATCTGT
321 ACATGAAGATAAGACTCGCAATTTTCGATATGC
* * * ** * *
51011779 TCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCTGAGGAAT
1 TCCATAGCCGATACATGGAGATAAGATCCATAACTTTCAACCTACTTCCTTGCTACCTCAGGAAT
* * * * * *
51011844 ATAAGACTTGTATCGTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTAATGGCTAAAATC
66 ATAAGACTAGTAGCGTAAACCTGCTCTCTAGC-ACATAAGAGAGATAAGGCT--TGGCTAAAATC
*
51011909 TACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGACCTGCTCTATAGCCGATACATA
128 TACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGACCTGCTCCATAGCCGATACATA
* * * *
51011974 GAGATAATATCTGTAATTTTTAGTTTACTTCCTTACTACCTGAGGAAGATAAGACTTGTATCTTC
193 GAGATAAAATCTGTAATTTTTAGTCTACTTCCCTACTACCTCAGGAAGATAAGACTTGTATCTTC
**
51012039 AACCTGCTCTCTTGTTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGAAAC
258 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGAAAC
*
51012104 ATTG-AGATAAGACTTGCAATTTTCGATATGC
323 A-TGAAGATAAGACTCGCAATTTTCGATATGC
* * *
51012135 TCCATAGCTGATACATGGAGATAAGATCCGTAACTTTCAACCTAC-TCTCTTGCTACTTCAGAGA
1 TCCATAGCCGATACATGGAGATAAGATCCATAACTTTCAACCTACTTC-CTTGCTACCTCAG-GA
* * * * * *
51012199 GATA-ATG-CTAGTGGC-TAAAATCTGCTC-CATAGC-CGATAAATAGAGATAAGACTTGCCATA
64 -ATATAAGACTAGTAGCGT-AAACCTGCTCTC-TAGCAC-AT-AAGAGAGATAAGGCTTGGC-TA
** * * * * * *
51012259 TTCGATCTGCTCCATAGCCGATACATGGAGATAAGA-TC-CGTAATTCTCAGTCTGCTCCATAGC
123 --AAATCTACTCCATAGCCGATACATGGAGATAAGACTCGC-CATTTTTGA-CCTGCTCCATAGC
*
51012322 CGATACATGGAGATAA
184 CGATACATAGAGATAA
51012338 GACCTGCAAT
Statistics
Matches: 477, Mismatches: 67, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
354 4 0.01
355 9 0.02
356 396 0.83
357 65 0.14
358 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (353 bp):
TCCATAGCCGATACATGGAGATAAGATCCATAACTTTCAACCTACTTCCTTGCTACCTCAGGAAT
ATAAGACTAGTAGCGTAAACCTGCTCTCTAGCACATAAGAGAGATAAGGCTTGGCTAAAATCTAC
TCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGACCTGCTCCATAGCCGATACATAGAG
ATAAAATCTGTAATTTTTAGTCTACTTCCCTACTACCTCAGGAAGATAAGACTTGTATCTTCAAC
CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGAAACATG
AAGATAAGACTCGCAATTTTCGATATGC
Found at i:51012317 original size:179 final size:179
Alignment explanation
Indices: 51012084--51012428 Score: 498
Period size: 179 Copynumber: 1.9 Consensus size: 179
51012074 GGTGGCTAAA
* * * *
51012084 ATCTGCTCCATAGCCGAAACATTGAGATAAGACTTGCAATTTTCGATATGCTCCATAGCTGATAC
1 ATCTGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTCTCGATATGCTCCATAGCCGATAC
* * *
51012149 ATGGAGATAAGATCC-GTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAATGCTAGTGG
66 ATGGAGATAAGA-CCTGCAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTAG
51012213 CTAAAATCTGCTCCATAGCCGATAAATAGAGATAAGACTTGCCATATTCG
130 CTAAAATCTGCTCCATAGCCGATAAATAGAGATAAGACTTGCCATATTCG
* * *
51012263 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCCGTAATTCTC-AGTCTGCTCCATAGCCGAT
1 ATCTGCTCCATAGCCGAAACATGGAGATAAGACT-CGCAATTCTCGA-TATGCTCCATAGCCGAT
* * * *
51012326 ACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTA
64 ACATGGAGATAAGACCTGCAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTA
* *
51012391 GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
129 GCTAAAATCTGCTCCATAGCCGATAAATAGAGATAAGA
51012429 TCTGTAATTC
Statistics
Matches: 147, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
178 4 0.03
179 143 0.97
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (179 bp):
ATCTGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTCTCGATATGCTCCATAGCCGATAC
ATGGAGATAAGACCTGCAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTAGC
TAAAATCTGCTCCATAGCCGATAAATAGAGATAAGACTTGCCATATTCG
Found at i:51012359 original size:45 final size:45
Alignment explanation
Indices: 51012217--51012360 Score: 182
Period size: 45 Copynumber: 3.2 Consensus size: 45
51012207 TAGTGGCTAA
* * * * *
51012217 AATCTGCTCCATAGCCGATAAATAGAGATAAGACTTGCCATATTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTC
* * *
51012262 GATCTGCTCCATAGCCGATACATGGAGATAAGATCC-GTAATTCTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGA-CCTGCAATTTTC
*
51012307 AGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTC
*
51012352 AACCTGCTC
1 AATCTGCTC
51012361 TCTTGCTACT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.02
45 80 0.96
46 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (45 bp):
AATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTC
Found at i:51012470 original size:89 final size:89
Alignment explanation
Indices: 51012132--51012472 Score: 245
Period size: 89 Copynumber: 3.8 Consensus size: 89
51012122 ATTTTCGATA
* * *
51012132 TGCTCCATAGCTGATACATGGAGATAAGATCC-GTAACTT-TCAACCTACTCTCTTGCTACTTC-
1 TGCTCCATAGCCGATACATGGAGATAAGA-CCTGCAA-TTCTCAACCTGCTCTCTTGCTAC-TCA
* * *
51012194 AGAGAGATAATGCTAGTGGCTAAAATC
63 AGAGAGATAAGGCTGGTAGCTAAAATC
* * * * * * * *
51012221 TGCTCCATAGCCGATAAATAGAGATAAGACTTGCCATAT-TCGATCTGCTC-CATAGCCGA-TAC
1 TGCTCCATAGCCGATACATGGAGATAAGACCTGCAAT-TCTCAACCTGCTCTC-TTG-CTACT-C
* * * * * *
51012283 ATG-GAGATAA-GATCCGTAATTCT-CAGTC
62 AAGAGAGATAAGGCT-GGT-A-GCTAAAATC
* **
51012311 TGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGA
1 TGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTCTCAACCTGCTCTCTTGCTACTCAAGA
51012376 GAGATAAGGCTGGTAGCTAAAATC
66 GAGATAAGGCTGGTAGCTAAAATC
* * ** *
51012400 TGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCT-TCCTTGGTACCTCAA
1 TGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTCTCAACCTGCTCT-CTTGCTA-CTCAA
51012464 GA-AGATAAG
64 GAGAGATAAG
51012473 ACTTATTTCT
Statistics
Matches: 193, Mismatches: 42, Indels: 34
0.72 0.16 0.13
Matches are distributed among these distances:
88 9 0.05
89 114 0.59
90 65 0.34
91 5 0.03
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (89 bp):
TGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTCTCAACCTGCTCTCTTGCTACTCAAGA
GAGATAAGGCTGGTAGCTAAAATC
Found at i:51012595 original size:178 final size:178
Alignment explanation
Indices: 51012397--51013141 Score: 1071
Period size: 178 Copynumber: 4.2 Consensus size: 178
51012387 GGTAGCTAAA
* *
51012397 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * *
51012462 AAGAAGATAAGACTTATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATGGCT
66 AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCT
* * *
51012527 AAAATCTACTCCATAGCCGATATATGGAGATAAGACTCGCTATTTTTT
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* * * *
51012575 ATCTACTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTGCTTCCCTGCTACGTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * * * *
51012640 AGGAAGATAAGACTTGTATCTTCAACCTGCTCCCTTACTACCTCAGAGAGATAAGGTTGGTGGCT
66 AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCT
* *
51012705 AAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTTG
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* * *
51012753 ATCTGCTCCATAGCCGATACATGGATATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCT-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
*
51012817 AAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT-AGTGG
66 AA-GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGA-TGG
*
51012881 CTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
129 CTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* * * * * * * * *
51012931 ATTTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * * *
51012996 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGTT
66 AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCT
* * * * *
51013061 AAAATCTGCTCCACAGACGAAACATGGAGATAAGACTCGCCATTTTCG
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
*
51013109 ATCTTCTCCATAGCCGATACATGGAGATAAGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAT
51013142 AGTAACTTTC
Statistics
Matches: 503, Mismatches: 60, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
177 1 0.00
178 501 1.00
179 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (178 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCT
AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
Found at i:51012603 original size:133 final size:134
Alignment explanation
Indices: 51012263--51012619 Score: 415
Period size: 133 Copynumber: 2.7 Consensus size: 134
51012253 GCCATATTCG
51012263 ATCTGCTCCATAGCCGATACATGGAGATAAGATC-CGTAATTCTCAGTCTGCTCCATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCGC-TAATTCTCAGTCTGCTCCATAGCCGATA
* * * *
51012327 CATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTAG
65 CATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATAG
51012392 CTAAA
130 CTAAA
* *
51012397 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTG-TAATTCTCAGTCTGCTTCCTTGGTACC-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATC-GCTAATTCTCAGTCTGC-TCCATAG--CCG
* * * *
51012460 -T-CAAGAAGATAAGA-CT-TATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTG
62 ATACATGGAGATAAGACCTGCAATT-TTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTG
*
51012521 ATGGCTAAA
126 ATAGCTAAA
* * * * * *
51012530 ATCTACTCCATAGCCGATATATGGAGATAAGACTCGCTATTTTTTA-TCTACTCCATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCGCTAATTCTCAGTCTGCTCCATAGCCGATA
* * *
51012594 CATGGAGATAAAATCTGTAATTTTCA
65 CATGGAGATAAGACCTGCAATTTTCA
51012620 GTCTGCTTCC
Statistics
Matches: 187, Mismatches: 23, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
130 2 0.01
132 9 0.05
133 90 0.48
134 74 0.40
135 10 0.05
137 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (134 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCGCTAATTCTCAGTCTGCTCCATAGCCGATAC
ATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATAGC
TAAA
Found at i:51012795 original size:45 final size:44
Alignment explanation
Indices: 51012708--51012804 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 44
51012698 GGTGGCTAAA
* *
51012708 ATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTCACAATTTTT
* * *
51012752 GATCTGCTCCATAGCCGATACATGGATATAAGA-TCTATAATTTTT
1 -ATCTGCTCCATAGCCGATACATAGAGATAAGACTC-ACAATTTTT
51012797 AGTCTGCT
1 A-TCTGCT
51012805 TCCTTGCTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
44 3 0.07
45 42 0.93
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGACTCACAATTTTT
Found at i:51013001 original size:980 final size:979
Alignment explanation
Indices: 51011103--51014208 Score: 5315
Period size: 980 Copynumber: 3.2 Consensus size: 979
51011093 CGCCATTTTC
* ** * *
51011103 AATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTATAATTCTC-AGTCTACTCCATAGCCGA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTC-GCAATTTTCGA-TCTGCTCCATAGCCGA
* * *
51011166 TACATGGAGATAAGA-CC-TACAACTTTCAATCTGCTCTTTTGCTACTTCAGAGAGATAAGGCTG
64 TACATGGAGATAAGATCCGT--AACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTA
51011229 GTGGCTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
127 GTGGCTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
* *
51011294 AGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCCGATACATAGAGATAAG
192 AGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAG
* * *
51011359 ACCTGCAATTTTCAACCTGCTCTCTTACTACTTTAGAGAGATAAGGATGGTGGCTAAAATCTGTT
257 ACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCT
51011424 CCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGA
322 CCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGA
* * *
51011489 TAAGACTTGTATCTTTAACCTGCTCTTTTGCTACCTCAAAGAGATAAGGTTGGTGGCTAAAATCT
387 TAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCT
51011554 ACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGG
452 ACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGG
51011619 AGATAAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
517 AGATAAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
* *
51011684 ACCTTCTCTCTTACTACCTCAGAGAGATAATGTTGGTGGCTAAAATCTGCTCCATAGCCGATACA
582 ACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACA
*
51011749 TGAAGATAAGACTCGCCATTTTTGATCTGTTCCATAGCCGATACATGGAGATAAGATCTATAATT
647 TG-AGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATT
*
51011814 TTTAGTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCGTCAACCTGCTCTCTTGCTAC
711 TTTAGTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTAC
*
51011879 CTTAGAGAGATAAGGCTAATGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCC
776 CTTAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCC
* *
51011944 ATTTTTGACCTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTTTACTTCCTTA
841 ATTTTTGATCTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTA
*
51012009 CTACCTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGTTACCTCAGAGAGATAAGGCT
906 CTACCTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
51012074 GGTGGCTAA
971 GGTGGCTAA
* * * *
51012083 AATCTGCTCCATAGCCGAAACATTGAGATAAGACTTGCAATTTTCGATATGCTCCATAGCTGATA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTTTCGATCTGCTCCATAGCCGATA
* *
51012148 CATGGAGATAAGATCCGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAATGCTAGTGG
66 CATGGAGATAAGATCCGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
* * *
51012213 CTAAAATCTGCTCCATAGCCGATAAATAGAGATAAGACTTGCCATATTCGATCTGCTCCATAGCC
131 CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
51012278 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
196 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
*
51012343 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTAGCTAAAATCTGCTCCAT
261 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
*
51012408 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
326 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAG
* * *
51012473 ACTTATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGATGGCTAAAATCTACTC
391 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
* * *
51012538 CATAGCCGATATATGGAGATAAGACTCGCTATTTTTTATCTACTCCATAGCCGATACATGGAGAT
456 CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGGAGAT
* *
51012603 AAAATCTGTAATTTTCAGTCTGCTTCCCTGCTACGTCAGGAAGATAAGACTTGTATCTTCAACCT
521 AAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
*
51012668 GCTCCCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGA
586 GCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACAT-GA
*
51012733 GATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGATATAAGATCTATAATTTTTA
650 GATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTA
* *
51012798 GTCTGCTTCCTTGCTACCTAAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCA
715 GTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTA
*
51012863 GAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTT
780 GAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTT
*
51012928 TTGATTTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
845 TTGATCTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
* *
51012993 TTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTG
910 CTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
*
51013058 GTTAA
975 GCTAA
* * * *
51013063 AATCTGCTCCACAGACGAAACATGGAGATAAGACTCGCCATTTTCGATCTTCTCCATAGCCGATA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTTTCGATCTGCTCCATAGCCGATA
* * * * *
51013128 CATGGAGATAAGAT-AGTAACTTTCAACCTGCTCTCTTACTATTTCAGAGAGATAAGGTTGGTGG
66 CATGGAGATAAGATCCGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
* * *
51013192 CTAAAATCTACTCCATATCCG-TAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCT
131 CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
* *
51013256 GATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTCTATAGCCGATACATGGAGATAAGACCT
196 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
* *
51013321 ACAATTTTCAACTTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
261 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
*
51013386 AGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAG
326 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAG
51013451 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
391 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
51013516 CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGGAGAT
456 CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGGAGAT
* *
51013581 AAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTTAGGAAGATAAGATTTGTATCTTCAACCT
521 AAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
*
51013646 GCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCTGATACATGGA
586 GCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACAT-GA
** * *
51013711 GATAAGACTTACCATTTTTCATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTA
650 GATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTA
*
51013776 GTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTTA
715 GTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTA
*
51013841 GAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACGTGGAGATAAGACTCGCCATTT
780 GAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTT
**
51013906 TTGATCTATTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
845 TTGATCTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
* * *
51013971 CTGAGGAAGATAAGACTTGTATCTTCAACCTACTATCTTGCTACCTCAGAGAGATAAGACTGGTG
910 CTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
51014036 GCTAA
975 GCTAA
* * *
51014041 AATCTGCTCCATAGCTGAAACATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTTTCGATCTGCTCCATAGCCGATA
*
51014106 CATGGAGATAAGATCCGTAACTTTTAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
66 CATGGAGATAAGATCCGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
*
51014171 CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGAC
131 CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGAC
51014209 CTGCAATTTT
Statistics
Matches: 1993, Mismatches: 126, Indels: 14
0.93 0.06 0.01
Matches are distributed among these distances:
978 859 0.43
979 125 0.06
980 1003 0.50
981 5 0.00
982 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (979 bp):
AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTTTCGATCTGCTCCATAGCCGATA
CATGGAGATAAGATCCGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAG
ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGGAGAT
AAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
GCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAG
ATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAG
TCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAG
AGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTT
TGATCTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACC
TGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
CTAA
Found at i:51013268 original size:45 final size:46
Alignment explanation
Indices: 51013202--51013326 Score: 134
Period size: 45 Copynumber: 2.8 Consensus size: 46
51013192 CTAAAATCTA
* * * *
51013202 CTCCATATCCG-TAAATGGAGATAAGACTC-GCCATTTTC-GATCTG
1 CTCCATAGCCGATACATGGAGATAAGACTCTGCAATTCTCAG-TCTG
* *
51013246 CTCCATAGCTGATACATGGAGATAAGA-TCTGTAATTCTCAGTCTG
1 CTCCATAGCCGATACATGGAGATAAGACTCTGCAATTCTCAGTCTG
* *
51013291 CTCTATAGCCGATACATGGAGATAAGAC-CTACAATT
1 CTCCATAGCCGATACATGGAGATAAGACTCTGCAATT
51013327 TTCAACTTGC
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
44 11 0.16
45 55 0.82
46 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (46 bp):
CTCCATAGCCGATACATGGAGATAAGACTCTGCAATTCTCAGTCTG
Found at i:51013272 original size:132 final size:133
Alignment explanation
Indices: 51013016--51013273 Score: 392
Period size: 132 Copynumber: 1.9 Consensus size: 133
51013006 GACTTGTATC
* * *
51013016 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGTTAAAATCTGCTCCACAGACGA
1 TTCAACCTGCTCTCTTACTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTACTCCACAGACGA
*
51013081 AACATGGAGATAAGACTCGCCATTTTCGATCTTCTCCATAGCCGATACATGGAGATAAGATAGTA
66 AACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATAGTA
51013146 ACT
131 ACT
** * * * ** *
51013149 TTCAACCTGCTCTCTTACTATTTCAGAGAGATAAGGTTGGTGGCTAAAATCTACTCCATATCCGT
1 TTCAACCTGCTCTCTTACTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTACTCCACAGACGA
*
51013214 AA-ATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCTGATACATGGAGATAAGAT
66 AACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGAT
51013274 CTGTAATTCT
Statistics
Matches: 112, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
132 56 0.50
133 56 0.50
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (133 bp):
TTCAACCTGCTCTCTTACTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTACTCCACAGACGA
AACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATAGTA
ACT
Found at i:51013338 original size:45 final size:45
Alignment explanation
Indices: 51013242--51013339 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
51013232 CCATTTTCGA
* * * ** *
51013242 TCTGCTCCATAGCTGATACATGGAGATAAGATCTGTAATTCTCAG
1 TCTGCTCTATAGCCGATACATGGAGATAAGACCTACAATTCTCAC
*
51013287 TCTGCTCTATAGCCGATACATGGAGATAAGACCTACAATTTTCAAC
1 TCTGCTCTATAGCCGATACATGGAGATAAGACCTACAATTCTC-AC
51013333 T-TGCTCT
1 TCTGCTCT
51013340 CTTGCTACTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 43 0.96
46 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (45 bp):
TCTGCTCTATAGCCGATACATGGAGATAAGACCTACAATTCTCAC
Found at i:51013522 original size:133 final size:133
Alignment explanation
Indices: 51013241--51013582 Score: 392
Period size: 133 Copynumber: 2.6 Consensus size: 133
51013231 GCCATTTTCG
* *
51013241 ATCTGCTCCATAGCTGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTCTATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTCTATAGCC-ATAC
* * * * *
51013306 ATGGAGATAAGACCTACAATTTTCAACTTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGC
65 ATGGAGATAAGACCTACAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGC
51013371 TAAA
130 TAAA
*
51013375 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCT-TGGTACC-
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGC-T-CTATAG--CCA
***
51013438 T-CA-GGAAGATAAGA-CTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGG
62 TACATGG-AGATAAGACCTACAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGG
51013500 TGGCTAAA
126 TGGCTAAA
* * * * * * *
51013508 ATCTACTCCATAGCCGATACATAGAGATAAGA-CTCGCTATTTTTTA-TCTGCTCCATAGCCGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCT-G-TAATTCTCAGTCTGCTCTATAGCC-AT
51013571 ACATGGAGATAA
63 ACATGGAGATAA
51013583 AATCTGTAAT
Statistics
Matches: 177, Mismatches: 19, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
130 2 0.01
131 1 0.01
132 6 0.03
133 93 0.53
134 67 0.38
135 4 0.02
136 2 0.01
137 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTCTATAGCCATACA
TGGAGATAAGACCTACAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCT
AAA
Found at i:51013603 original size:45 final size:45
Alignment explanation
Indices: 51013508--51013604 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
51013498 GGTGGCTAAA
* * *
51013508 ATCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAAACTCGCTAATTTTT
*
51013553 ATCTGCTCCATAGCCGATACATGGAGATAAAA-TCTG-TAATTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAAACTC-GCTAATTTTT
51013597 AGTCTGCT
1 A-TCTGCT
51013605 TCCCTGCTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 10 0.22
45 36 0.78
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAAACTCGCTAATTTTT
Found at i:51013773 original size:45 final size:43
Alignment explanation
Indices: 51013686--51013782 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 43
51013676 GGTGGCTAAA
*
51013686 ATCTGCTCCATAGCTGATACATGGAGATAAGACTTACCATTTTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTA-CATTTTT
51013730 CATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTA-ATTTTT
1 -ATCTGCTCCATAGCCGATACATGGAGATAAGA-CT-TACATTTTT
51013775 AGTCTGCT
1 A-TCTGCT
51013783 TCCTTGCTAC
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
44 1 0.02
45 43 0.90
46 2 0.04
47 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (43 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTTACATTTTT
Found at i:51014160 original size:223 final size:220
Alignment explanation
Indices: 51013978--51014393 Score: 541
Period size: 223 Copynumber: 1.9 Consensus size: 220
51013968 TACCTGAGGA
* *
51013978 AGATAAGACTTG-TATCTTCAACCTACTATCTTGCTACCTCAGAGAGATAAGACTGGTGGCTAAA
1 AGATAAGACCTGCAATCTTCAACCTACTATCTTGCTACCTCAGAGAGATAAGACTGGTGGCTAAA
*
51014042 ATCTGCTCCATAGCTGAAACATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATAC
66 ATCTGCTCCATAGCTGAAACATGGAGATAAAACTCACCATTTTCGATCTGCTCCATAGCCGATAC
* ** *
51014107 ATGGAGATAAGATCCGTAACTTTT-AACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTAGT-G
131 ATGGAGATAAGATCCGTAA-TTTTCAACCTGCTCTCTTGCTACCTCA-AGAGATAAACCT-GTAA
*
51014170 GCTAAAATCTGCTCCATAGCCGATACATGG
193 GCTAAAATCTACTCCATA-CC-ATACATGG
* * * * * *
51014200 AGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAA
1 AGATAAGACCTGCAATCTTCAACCTACTATCTTGCTACCTCAGAGAGATAAGACTGGTGGCTAAA
* * * * *
51014265 ATCTGCTCCATAGCTGAGATATGGAGATAAAACTCGCCATTTTCGATTTGCTTCATAGCCGATAC
66 ATCTGCTCCATAGCTGAAACATGGAGATAAAACTCACCATTTTCGATCTGCTCCATAGCCGATAC
* ** *
51014330 ATGGAGATAAGATCTGTAATTTTCAGTCTGCTTTCTTGCTACCTCAAGAAGATAAGACCTGTAA
131 ATGGAGATAAGATCCGTAATTTTCAACCTGCTCTCTTGCTACCTCAAG-AGATAA-ACCTGTAA
51014394 ATTCACCGAT
Statistics
Matches: 167, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
222 17 0.10
223 148 0.89
224 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (220 bp):
AGATAAGACCTGCAATCTTCAACCTACTATCTTGCTACCTCAGAGAGATAAGACTGGTGGCTAAA
ATCTGCTCCATAGCTGAAACATGGAGATAAAACTCACCATTTTCGATCTGCTCCATAGCCGATAC
ATGGAGATAAGATCCGTAATTTTCAACCTGCTCTCTTGCTACCTCAAGAGATAAACCTGTAAGCT
AAAATCTACTCCATACCATACATGG
Found at i:51014162 original size:178 final size:178
Alignment explanation
Indices: 51013375--51014162 Score: 1114
Period size: 178 Copynumber: 4.4 Consensus size: 178
51013365 GGTGGCTAAA
* * *
51013375 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* *
51013440 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * * **
51013505 AAAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTT
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCG
* *
51013553 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCCTGCTACCTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * * *
51013618 AGGAAGATAAGATTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * *
51013683 AAAATCTGCTCCATAGCTGATACATGGAGATAAGACTTACCATTTTTC-
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCA-TTTTCG
* *
51013731 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * *
51013796 AGGAATATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTTAGAGAGATAAGGCTAGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * *
51013861 AAAATCTACTCCATAGCCGATACGTGGAGATAAGACTCGCCATTTTTG
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCG
** * * * * * *
51013909 ATCTATTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* *
51013974 AGGAAGATAAGACTTGTATCTTCAACCTACTATCTTGCTACCTCAGAGAGATAAGACTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * *
51014039 AAAATCTGCTCCATAGCTGAAACATGGAGATAAGACTCACCATTTTCG
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCG
* * * ** *
51014087 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAACTTTTAACCTGC-TCTCTTGCTACTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTC-CTTGCTACCT
51014151 CA-GAGAGATAAG
65 CAGGA-AGATAAG
51014163 GCTAGTGGCT
Statistics
Matches: 543, Mismatches: 63, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
177 8 0.01
178 531 0.98
179 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (178 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCG
Found at i:51014185 original size:89 final size:89
Alignment explanation
Indices: 51014087--51014294 Score: 330
Period size: 89 Copynumber: 2.3 Consensus size: 89
51014077 ACCATTTTCG
*
51014087 ATCTGCTCCATAGCCGATACATGGAGATAAGATCC-GTAACTTTT-AACCTGCTCTCTTGCTACT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CCTGCAA-TTTTCAACCTGCTCTCTTGCTACT
51014150 TCAGAGAGATAAGGCTAGTGGCTAAA
64 TCAGAGAGATAAGGCTAGTGGCTAAA
*
51014176 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTC
*
51014241 AGAGAGATAAGGCTGGTGGCTAAA
66 AGAGAGATAAGGCTAGTGGCTAAA
* * *
51014265 ATCTGCTCCATAGCTGAGATATGGAGATAA
1 ATCTGCTCCATAGCCGATACATGGAGATAA
51014295 AACTCGCCAT
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
88 6 0.05
89 105 0.95
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (89 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTC
AGAGAGATAAGGCTAGTGGCTAAA
Found at i:51018785 original size:19 final size:19
Alignment explanation
Indices: 51018761--51018806 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
51018751 TGTGAAGTTT
*
51018761 AATGCACATG-ATGCAATG
1 AATGCAAATGCATGCAATG
*
51018779 CAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGCAATG
51018799 AATGCAAA
1 AATGCAAA
51018807 AGAAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGCAATG
Found at i:51020360 original size:125 final size:126
Alignment explanation
Indices: 51020231--51020530 Score: 367
Period size: 126 Copynumber: 2.4 Consensus size: 126
51020221 GTAAATTGCC
* ** * * *
51020231 ACCCAGCACGATTGGGCACGATTTAC-CAAA-TTTCTAAATACGAAATATTGTCTCATTTTAA-T
1 ACCCAGCACGATAGGGCACGATTT-CTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATT
* * *
51020293 TTAAGAAAACATGGATGAAA-TGTCAAAAGGATATTCCGTATCTTAGTCGAATGAAAAATCGAA
65 TTAA-AAAACATGGACGAAATTGTC-AAAGGACATTCCGTATCTTAGTCGAACGAAAAATCGAA
* *
51020356 ACCCAGCACGATAGGACACGATCTCTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATTT
1 ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATTT
* * * *
51020421 TAAAAAGCATGGACGAAATTTTCAAAGGACATTCCGTATTTTAGTTGAACGAAAAATCGAA
66 TAAAAAACATGGACGAAATTGTCAAAGGACATTCCGTATCTTAGTCGAACGAAAAATCGAA
* * * *
51020482 ACCCAGCATGACAGGGCACGATTCCTCGAACTCCCC-AACACGAAATATT
1 ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACGAAATATT
51020531 TCCTTATGTT
Statistics
Matches: 150, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
124 1 0.01
125 38 0.25
126 103 0.69
127 8 0.05
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (126 bp):
ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATTT
TAAAAAACATGGACGAAATTGTCAAAGGACATTCCGTATCTTAGTCGAACGAAAAATCGAA
Done.