Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 156 of 259
Found at i:51020926 original size:23 final size:23
Alignment explanation
Indices: 51020860--51020926 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
51020850 TATAAGAAAA
*
51020860 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
51020880 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
51020903 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
51020926 A
1 A
51020927 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:51020933 original size:17 final size:15
Alignment explanation
Indices: 51020893--51020938 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
51020883 ATATAAATAG
*
51020893 AAATAAAAATATAAT
1 AAATAGAAATATAAT
51020908 AAATAGAAATATAAT
1 AAATAGAAATATAAT
51020923 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
51020939 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:51020948 original size:14 final size:13
Alignment explanation
Indices: 51020908--51021009 Score: 59
Period size: 14 Copynumber: 7.2 Consensus size: 13
51020898 AAAATATAAT
51020908 AAATAGA-AATATA
1 AAATAGATAA-ATA
*
51020921 ATAATAGTAGAAATA
1 A-AATAG-ATAAATA
51020936 TAAATAGATAAATA
1 -AAATAGATAAATA
51020950 AAATTAGATAAATA
1 AAA-TAGATAAATA
51020964 ATAATAGTATTAGAATA
1 A-AATAG-A-TA-AATA
51020981 ACAA-A-ATAAATA
1 A-AATAGATAAATA
51020993 TAAATAGA-AACATA
1 -AAATAGATAA-ATA
51021007 AAA
1 AAA
51021010 ATAATAGCAA
Statistics
Matches: 74, Mismatches: 2, Indels: 26
0.73 0.02 0.25
Matches are distributed among these distances:
12 6 0.08
13 13 0.18
14 30 0.41
15 12 0.16
16 6 0.08
17 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (13 bp):
AAATAGATAAATA
Found at i:51020967 original size:29 final size:30
Alignment explanation
Indices: 51020903--51021024 Score: 76
Period size: 29 Copynumber: 4.2 Consensus size: 30
51020893 AAATAAAAAT
51020903 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
51020933 AT-ATAAATAGATAA-ATAA-AATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
* * * * ** *
51020961 ATAAT-AATAGTATTAGAATAACAAAATAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
* * * *
51020990 AT-ATAAATAGAAACATAAAAATAATAGCA
1 ATAATAAATAGAAATATAATAATAGTAGAA
51021019 ATAATA
1 ATAATA
51021025 TATTAAATTA
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 43 0.62
30 7 0.10
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.26
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:51022099 original size:3 final size:3
Alignment explanation
Indices: 51022093--51022121 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51022083 ATGATGAATT
51022093 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
51022122 TGATGATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51023115 original size:18 final size:18
Alignment explanation
Indices: 51023048--51023279 Score: 346
Period size: 18 Copynumber: 12.9 Consensus size: 18
51023038 ATAATCTTCA
51023048 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
51023067 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
51023086 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
51023103 ATAATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
51023121 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
51023139 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
51023156 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
51023174 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
51023192 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
51023209 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
51023227 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
51023244 ATGATTGCAATCTTAGAC
1 ATGATTGCAATCTTAGAT
*
51023262 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
51023280 AGATATGATT
Statistics
Matches: 196, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
17 63 0.32
18 99 0.51
19 34 0.17
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:51023119 original size:35 final size:35
Alignment explanation
Indices: 51023056--51023279 Score: 351
Period size: 35 Copynumber: 6.3 Consensus size: 35
51023046 CAATGATATG
51023056 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
* *
51023092 CAATCTTAGATATAATTGCAATCTTAGATATGATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGA-TA
* *
51023128 CAATCTTAGATATGA-TACAATCTTAGATATGATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGA-TA
51023163 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
51023198 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
51023233 CAATCTTAGATATGATTGCAATCTTAGACATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
51023270 CAATCTTAGA
1 CAATCTTAGA
51023280 AGATATGATT
Statistics
Matches: 177, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
35 118 0.67
36 46 0.26
37 13 0.07
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:51023135 original size:53 final size:53
Alignment explanation
Indices: 51023048--51023279 Score: 376
Period size: 53 Copynumber: 4.3 Consensus size: 53
51023038 ATAATCTTCA
51023048 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
51023103 ATAATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
51023156 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
* * *
51023209 ATGATTGCAATCTTAGATATGA-TACAATCTTAGATATGATTGCAATCTTAGAC
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
*
51023262 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
51023280 AGATATGATT
Statistics
Matches: 169, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
52 16 0.09
53 120 0.71
54 29 0.17
55 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (53 bp):
ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:51027714 original size:24 final size:24
Alignment explanation
Indices: 51027682--51027731 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
51027672 TGTTAGAATT
51027682 ATCTATACTATATTTAAGATTTTG
1 ATCTATACTATATTTAAGATTTTG
*
51027706 ATCTCTACTATATTTAAGATTTTG
1 ATCTATACTATATTTAAGATTTTG
51027730 AT
1 AT
51027732 TGAGTTAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (24 bp):
ATCTATACTATATTTAAGATTTTG
Found at i:51029020 original size:13 final size:12
Alignment explanation
Indices: 51029002--51029036 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
51028992 GAATTTTTGC
51029002 TTTCTTTTCCCT
1 TTTCTTTTCCCT
*
51029014 ATTTCTTCTCCCT
1 -TTTCTTTTCCCT
51029027 TTTCTTTTCC
1 TTTCTTTTCC
51029037 ATCTTCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTCTTTTCCCT
Found at i:51029967 original size:38 final size:37
Alignment explanation
Indices: 51029906--51030034 Score: 91
Period size: 38 Copynumber: 3.4 Consensus size: 37
51029896 ATTATTGGTT
* * * *
51029906 ACATGCCTACCGTTACCGTTGAACCGATTACATGTTAA
1 ACATGTCTACTGTTACTGATGAACCGA-TACATGTTAA
* *
51029944 ACATGTCTACTGTTACTGATGAACTAGATACATGATAAA
1 ACATGTCTACTGTTACTGATGAAC-CGATACATG-TTAA
* * *
51029983 AAATG-CTTATTGTTACT-ATCAAACCGAATACATGTTAA
1 ACATGTC-TACTGTTACTGAT-GAACCG-ATACATGTTAA
* *
51030021 GCATGTCTATTGTT
1 ACATGTCTACTGTT
51030035 TCTATACTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
38 43 0.60
39 29 0.40
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (37 bp):
ACATGTCTACTGTTACTGATGAACCGATACATGTTAA
Found at i:51030269 original size:91 final size:91
Alignment explanation
Indices: 51030114--51030284 Score: 254
Period size: 91 Copynumber: 1.9 Consensus size: 91
51030104 CTAATAGTTT
* * * *
51030114 ACCTACAAACACTGGTGGTTTATCCACACACTTTTTGACAAATTTTATCTACAAACTCTTTGTGC
1 ACCTACAAACACTGGTGGTTTATCCACACAATTTCTGACAAATTTTATCTACAAACCCGTTGTGC
51030179 ATTCACAACCTACTGGTAGTGTATCA
66 ATTCACAACCTACTGGTAGTGTATCA
* ** *
51030205 ACCTACAAACACTGGTGGTTTATCCACA-AATTTACTGGCAGCTTTTATCTATAAACCCGTTGTG
1 ACCTACAAACACTGGTGGTTTATCCACACAATTT-CTGACAAATTTTATCTACAAACCCGTTGTG
51030269 CATTCACAACCTACTG
65 CATTCACAACCTACTG
51030285 ACAGCGTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
90 4 0.06
91 67 0.94
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (91 bp):
ACCTACAAACACTGGTGGTTTATCCACACAATTTCTGACAAATTTTATCTACAAACCCGTTGTGC
ATTCACAACCTACTGGTAGTGTATCA
Found at i:51030521 original size:18 final size:18
Alignment explanation
Indices: 51030500--51030537 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51030490 CTAAAAATTG
51030500 TTATTATGTATGC-TTGAT
1 TTATTAT-TATGCATTGAT
*
51030518 TTATTATTTTGCATTGAT
1 TTATTATTATGCATTGAT
51030536 TT
1 TT
51030538 TCTTATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.61
Consensus pattern (18 bp):
TTATTATTATGCATTGAT
Found at i:51032253 original size:12 final size:12
Alignment explanation
Indices: 51032236--51032260 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51032226 ACTTAATCAC
51032236 TTTAATATTAAA
1 TTTAATATTAAA
51032248 TTTAATATTAAA
1 TTTAATATTAAA
51032260 T
1 T
51032261 ATTATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:51035008 original size:32 final size:32
Alignment explanation
Indices: 51034967--51035028 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
51034957 GAATAAAGTA
51034967 TGTGGTGTACATCGATGCATCCTACACTGGTC
1 TGTGGTGTACATCGATGCATCCTACACTGGTC
*
51034999 TGTGGTGTACATCGATGCATCCTACGCTGG
1 TGTGGTGTACATCGATGCATCCTACACTGG
51035029 CCTTGGATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (32 bp):
TGTGGTGTACATCGATGCATCCTACACTGGTC
Found at i:51038127 original size:39 final size:38
Alignment explanation
Indices: 51038057--51038149 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 38
51038047 ATTACATTTT
* * *
51038057 AAACATGCCTACTATTACTGATGAACTGAATACATGATA
1 AAACATGCCTACTGTTACTGATAAACCGAATACATG-TA
* *
51038096 AAACATGCCTACTGTTATTG-TCAAACCGAATACATGTT
1 AAACATGCCTACTGTTACTGAT-AAACCGAATACATGTA
* *
51038134 AAGCATGTCTACTGTT
1 AAACATGCCTACTGTT
51038150 TTCTATACTT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 16 0.35
39 30 0.65
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (38 bp):
AAACATGCCTACTGTTACTGATAAACCGAATACATGTA
Found at i:51038390 original size:91 final size:91
Alignment explanation
Indices: 51038228--51038442 Score: 267
Period size: 91 Copynumber: 2.4 Consensus size: 91
51038218 TACTGGCAGT
* * *
51038228 TTAACTA-CAAACACTAGTGGCTTATCCACACACTTACTGACAAATTTTATCTACAAACCCATTA
1 TTAACTAGCAAACACTGGTGGTTTATCCACAAACTTACTGACAAATTTTATCTACAAACCCATTA
*
51038292 TGCATTCACAACCTACTGGCAGCGTA
66 TGCATTCACAACCTACTGGCAACGTA
* ** * * *
51038318 TTAACCT-GCAAACACTGGTGGTTTATCCATAAACTTACTAGA-AGCTTTTATTTGCAAACCCGT
1 TTAA-CTAGCAAACACTGGTGGTTTATCCACAAACTTACT-GACAAATTTTATCTACAAACCCAT
* *
51038381 TGTGCATTCACAACCTAGTGGCAACGTA
64 TATGCATTCACAACCTACTGGCAACGTA
*
51038409 TTAACTAGC-AACACTGGTGGTTCATCCACAAACT
1 TTAACTAGCAAACACTGGTGGTTTATCCACAAACT
51038443 GGAGTGTCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
90 29 0.27
91 76 0.71
92 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (91 bp):
TTAACTAGCAAACACTGGTGGTTTATCCACAAACTTACTGACAAATTTTATCTACAAACCCATTA
TGCATTCACAACCTACTGGCAACGTA
Found at i:51041471 original size:27 final size:26
Alignment explanation
Indices: 51041425--51041558 Score: 126
Period size: 27 Copynumber: 5.0 Consensus size: 26
51041415 CATGTTGGAC
**
51041425 CGAAATACCCCCATAGGGTAAAATGA
1 CGAAATACCCCTGTAGGGTAAAATGA
*
51041451 TCGAAATACCCCTGTAAGGTAAAATGA
1 -CGAAATACCCCTGTAGGGTAAAATGA
* *
51041478 CCAAAATA-CCCTGATAGGGTCAAATGA
1 -CGAAATACCCCTG-TAGGGTAAAATGA
* *
51041505 CTGTAATACCCCTATAGGGTAAAATGA
1 C-GAAATACCCCTGTAGGGTAAAATGA
* * *
51041532 CTATAATACCCCTGTAAGATAAAATGA
1 CGA-AATACCCCTGTAGGGTAAAATGA
51041559 TTGATTTGCC
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
26 6 0.07
27 77 0.89
28 4 0.05
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (26 bp):
CGAAATACCCCTGTAGGGTAAAATGA
Found at i:51041513 original size:54 final size:54
Alignment explanation
Indices: 51041422--51041543 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
51041412 GGCCATGTTG
* *
51041422 GACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTGTAAGGTAAAAT
1 GACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAAT
** * * *
51041476 GACCAAAATACCCTGATAGGGTCAAATGA-CTGTAATACCCCTATAGGGTAAAAT
1 GACCAAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCTATAAGGTAAAAT
* *
51041530 GACTATAATACCCC
1 GACCAAAATACCCC
51041544 TGTAAGATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.20
Consensus pattern (54 bp):
GACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAAT
Found at i:51041747 original size:36 final size:36
Alignment explanation
Indices: 51041707--51041775 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
51041697 ACTGATATGG
*
51041707 TTGCACGGGTCACCCAAGATGACTGTGGACCTAAGA
1 TTGCACGGGTCACCCAAGACGACTGTGGACCTAAGA
51041743 TTGCACGGGTCACCCAAGACGACTGTGGACCTA
1 TTGCACGGGTCACCCAAGACGACTGTGGACCTA
51041776 CGGATGGCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.19
Consensus pattern (36 bp):
TTGCACGGGTCACCCAAGACGACTGTGGACCTAAGA
Found at i:51043133 original size:35 final size:35
Alignment explanation
Indices: 51043094--51043166 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
51043084 AGGCTTTAAG
51043094 TAGATGGGCTTCTCCACATGTTCCACGAATCGAGT
1 TAGATGGGCTTCTCCACATGTTCCACGAATCGAGT
51043129 TAGATGGGCTTCTCCACATGTTCCACGAATCGAGT
1 TAGATGGGCTTCTCCACATGTTCCACGAATCGAGT
51043164 TAG
1 TAG
51043167 TTCAAATGGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (35 bp):
TAGATGGGCTTCTCCACATGTTCCACGAATCGAGT
Found at i:51049377 original size:15 final size:16
Alignment explanation
Indices: 51049357--51049390 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
51049347 AAAATTAAAT
51049357 AAACTAA-CTAAATGC
1 AAACTAACCTAAATGC
*
51049372 AAACTAACCTAAATTC
1 AAACTAACCTAAATGC
51049388 AAA
1 AAA
51049391 TGAGATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (16 bp):
AAACTAACCTAAATGC
Found at i:51052067 original size:26 final size:26
Alignment explanation
Indices: 51052038--51052171 Score: 214
Period size: 26 Copynumber: 5.2 Consensus size: 26
51052028 TGGTACAAAT
*
51052038 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
51052064 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
51052090 TGATAACGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
51052116 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
51052142 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
51052168 TGAT
1 TGAT
51052172 GGGCATTTCA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:51058831 original size:26 final size:26
Alignment explanation
Indices: 51058802--51058901 Score: 129
Period size: 26 Copynumber: 4.0 Consensus size: 26
51058792 TGGTACAAAT
51058802 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
51058828 TGATAATGGATTAGGGAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51058854 TGATAAT--G---GGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51058875 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51058901 T
1 T
51058902 AATGGGCATT
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
21 18 0.29
26 44 0.71
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51058873 original size:21 final size:21
Alignment explanation
Indices: 51058815--51058883 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 21
51058805 TAATGGGTTA
51058815 GGTAAATGTTCCATGATAATGG
1 GGTAAATGTTCCATGATAAT-G
* *
51058837 ATTAGGGAAATATTCCATGATAATG
1 ----GGTAAATGTTCCATGATAATG
51058862 GGTAAATGTTCCATGATAATG
1 GGTAAATGTTCCATGATAATG
51058883 G
1 G
51058884 TTTAGGTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 20 0.51
25 1 0.03
26 18 0.46
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.32
Consensus pattern (21 bp):
GGTAAATGTTCCATGATAATG
Found at i:51062658 original size:96 final size:94
Alignment explanation
Indices: 51062480--51063144 Score: 1105
Period size: 96 Copynumber: 7.0 Consensus size: 94
51062470 TAGTATGGCG
*
51062480 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
51062545 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
51062576 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51062641 ATGTGAAAGTGTATATATATGTGATAGGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
51062672 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51062737 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
*
51062768 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51062833 ATGTGAAAGTGTATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
* *
51062862 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
51062927 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
51062958 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
51063023 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
51063054 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51063119 ATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGAAAGTGTATATATGTGATAAG
51063145 TCCCGAAGGG
Statistics
Matches: 546, Mismatches: 19, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 145 0.27
96 401 0.73
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:51062743 original size:143 final size:142
Alignment explanation
Indices: 51062480--51063144 Score: 1118
Period size: 143 Copynumber: 4.6 Consensus size: 142
51062470 TAGTATGGCG
51062480 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
51062545 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATA
64 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATA
51062609 TATGTGATAAGGCC
129 TATGTGATAAGGCC
*
51062623 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
51062688 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATAT
51062753 ATATGTGATAAGGCC
128 ATATGTGATAAGGCC
* *
51062768 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
51062833 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATAT
*
51062898 ATGTGATAGGGCC
130 ATGTGATAAGGCC
*
51062911 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
51062976 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
66 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATA
51063040 TATGTGATAAGGCC
129 TATGTGATAAGGCC
* * * * * *
51063054 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
*
51063119 ATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGAAAGTGTATATATGTGATAAG
51063145 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
141 14 0.03
143 396 0.79
145 94 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCC
Found at i:51062899 original size:239 final size:239
Alignment explanation
Indices: 51062480--51063142 Score: 1222
Period size: 239 Copynumber: 2.8 Consensus size: 239
51062470 TAGTATGGCG
* *
51062480 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
51062545 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51062610 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAA
131 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAA
51062675 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
196 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51062719 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
51062784 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51062849 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAA
131 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAA
51062914 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
196 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51062958 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
51063023 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
51063088 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATA
131 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
51063143 AGTCCCGAAG
Statistics
Matches: 414, Mismatches: 10, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
237 8 0.02
238 1 0.00
239 405 0.98
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (239 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:51063318 original size:36 final size:36
Alignment explanation
Indices: 51063264--51063336 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
51063254 CAAGCTCTAA
* *
51063264 AGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51063300 AGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51063336 A
1 A
51063337 AGACTTCGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 32 0.97
37 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (36 bp):
AGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51072509 original size:3 final size:3
Alignment explanation
Indices: 51072501--51072537 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
51072491 ATTCCATAAG
* *
51072501 ATA ATA ATA ATA ATA ATA ATA ATA ATT ATA ACA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
51072538 ATATCTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:51074494 original size:46 final size:46
Alignment explanation
Indices: 51074442--51074570 Score: 168
Period size: 46 Copynumber: 2.8 Consensus size: 46
51074432 TGTAACCCGC
* * *
51074442 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
* * * *
51074488 CCATAAGTGAACTCAGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
* * *
51074534 CCATAAGTGAACTCGGATTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGA
51074571 TGCCCAAATA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
Found at i:51082800 original size:26 final size:26
Alignment explanation
Indices: 51082764--51082873 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
51082754 TGATACAAAT
51082764 TGATAATAGGTTAGGTAAATG-TTCTA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
51082790 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
51082816 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
51082842 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
51082868 TGATAA
1 TGATAA
51082874 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:51084060 original size:8 final size:8
Alignment explanation
Indices: 51084047--51084074 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51084037 CTAGATCGGC
51084047 AAAAGCCG
1 AAAAGCCG
51084055 AAAAGCCG
1 AAAAGCCG
51084063 AAAAGCCG
1 AAAAGCCG
51084071 AAAA
1 AAAA
51084075 CCGGTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.21, G:0.21, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:51085997 original size:35 final size:34
Alignment explanation
Indices: 51085905--51086003 Score: 120
Period size: 29 Copynumber: 3.0 Consensus size: 34
51085895 GGAATGTTGG
*
51085905 GGGTCTATACCTAACATTGAGATTTCTACTTGTAT
1 GGGTCTGTA-CTAACATTGAGATTTCTACTTGTAT
51085940 GGGT-TG--C-AAGC--TGAGATTTCTACTTGTAT
1 GGGTCTGTACTAA-CATTGAGATTTCTACTTGTAT
51085969 GGGTCTGTACTTAACATTGAGATTTCTACTTGTAT
1 GGGTCTGTAC-TAACATTGAGATTTCTACTTGTAT
51086004 AGGTATCAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 16
0.76 0.01 0.22
Matches are distributed among these distances:
29 22 0.40
30 4 0.07
31 2 0.04
32 1 0.02
33 1 0.02
34 3 0.05
35 22 0.40
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (34 bp):
GGGTCTGTACTAACATTGAGATTTCTACTTGTAT
Found at i:51087275 original size:22 final size:22
Alignment explanation
Indices: 51087217--51087272 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
51087207 ACTAGATTGG
51087217 TATGCAATCTT---AGATATGA
1 TATGCAATCTTAGAAGATATGA
51087236 TATGCAATCTTAGAAGATATGA
1 TATGCAATCTTAGAAGATATGA
* *
51087258 TTTTGTAATCTTAGA
1 -TATGCAATCTTAGA
51087273 GATTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 11 0.35
22 8 0.26
23 12 0.39
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
TATGCAATCTTAGAAGATATGA
Found at i:51092942 original size:23 final size:24
Alignment explanation
Indices: 51092916--51092968 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
51092906 TTCTATTTCA
**
51092916 AAAAAAAGAGGAAAAAAG-AAAAG
1 AAAAAAAGAAAAAAAAAGAAAAAG
51092939 AAAAAAAGAAAAAAAAAGAAAAAG
1 AAAAAAAGAAAAAAAAAGAAAAAG
51092963 AAAAAA
1 AAAAAA
51092969 TGGAGAGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (24 bp):
AAAAAAAGAAAAAAAAAGAAAAAG
Found at i:51092943 original size:13 final size:13
Alignment explanation
Indices: 51092927--51092968 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
51092917 AAAAAAGAGG
51092927 AAAAAAGAAAAGA
1 AAAAAAGAAAAGA
51092940 AAAAAAGAAAA-A
1 AAAAAAGAAAAGA
*
51092952 AAAAGA-AAAAGA
1 AAAAAAGAAAAGA
51092964 AAAAA
1 AAAAA
51092969 TGGAGAGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 4 0.15
12 11 0.42
13 11 0.42
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAGA
Found at i:51093973 original size:43 final size:43
Alignment explanation
Indices: 51093918--51094397 Score: 164
Period size: 43 Copynumber: 11.5 Consensus size: 43
51093908 AAATTCAGCG
*
51093918 TCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* * *
51093961 TCTT-ATCTCCCTAAGCAGTAGTGG-AGA-AGATCGAAGA-CT-C-G-
1 TCTTAATC-CCCTAAGCAGTAG-GGTA-ACAGGT-TAA-ATTTGCAGA
* *
51094002 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* * * * *
51094045 ACTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-
1 TCTTAATC-CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGA
* * *
51094086 CCTTAATCCCCTAAGCGGTAAGGTAACAGGTTAAATTTGCAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
** * * *
51094129 TCTT-ATCTCCCTAAGCAGTAGTGG-AGTAGATCGAAGA-CT-C-G-
1 TCTTAATC-CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGA
* * *
51094170 CCTTAATCCCCTAAGCAGTAGAGTAACAGG-----TTCGCAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* * * * **
51094208 TCTT-ATCTCCCTAAGCAGTAGCGG-AGCAGATCGACAA--CGACTCA
1 TCTTAATC-CCCTAAGCAGTAG-GGTAACAGGT-TA-AATTTG-CAGA
*
51094252 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
** * ** *** *
51094295 TCTT-ATCTCCCTAAGCAGTAGTGG-AGTAGATCGAA-GACCCG-
1 TCTTAATC-CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCAGA
* * *
51094336 CCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
*
51094379 TCTT-AT-CCTTAAGCAGTAG
1 TCTTAATCCCCTAAGCAGTAG
51094398 CGGAGCAGAT
Statistics
Matches: 312, Mismatches: 73, Indels: 106
0.64 0.15 0.22
Matches are distributed among these distances:
36 1 0.00
37 4 0.01
38 20 0.06
39 3 0.01
40 14 0.04
41 91 0.29
42 37 0.12
43 94 0.30
44 42 0.13
45 6 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
Found at i:51094060 original size:84 final size:84
Alignment explanation
Indices: 51093919--51094444 Score: 778
Period size: 84 Copynumber: 6.3 Consensus size: 84
51093909 AATTCAGCGT
*
51093919 CTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
51093984 GAGAAGATCGAAGACTCGC
66 GAGCAGATCGAAGACTCGC
* *
51094003 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGAACTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
51094068 GAGCAGATCGAAGACTCGC
66 GAGCAGATCGAAGACTCGC
* *
51094087 CTTAATCCCCTAAGCGGTAAGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
51094152 GAGTAGATCGAAGACTCGC
66 GAGCAGATCGAAGACTCGC
* * *
51094171 CTTAATCCCCTAAGCAGTAGAGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAGCG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
51094231 GAGCAGATCGACAACGACTCAC
66 GAGCAGATCG--AA-GACTCGC
51094253 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
* *
51094318 GAGTAGATCGAAGACCCGC
66 GAGCAGATCGAAGACTCGC
* * * *
51094337 CTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTA--TCCTTAAGCAGTAGCG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
51094400 GAGCAGATCGAAGACGATGCAC
66 GAGCAGATCGAAGAC--T-CGC
*
51094422 CTTAACCCCCTAAGCAGTAGGGT
1 CTTAATCCCCTAAGCAGTAGGGT
51094445 CCAAGATGAT
Statistics
Matches: 400, Mismatches: 31, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
79 38 0.09
81 2 0.00
82 62 0.16
84 235 0.59
85 25 0.06
87 38 0.09
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGAAGACTCGC
Found at i:51094744 original size:134 final size:134
Alignment explanation
Indices: 51094586--51094907 Score: 425
Period size: 134 Copynumber: 2.4 Consensus size: 134
51094576 GATCCAAAAT
* * *
51094586 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGGCATAGTAGATCTAATATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTAACATTCCTGTGCT
* *
51094651 TACAGCGAAGCAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
51094716 AGCA
131 AGCA
* *
51094720 GATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTAACATTCCTGTGCT
* * * * * *
51094785 TCCAACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAATCGAATA-
66 TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
**
51094849 AATA
131 AGCA
* ** *
51094853 GATTTGGCATCTCCATAT-TCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTAAC
1 GATTTGGCATC-CC-TGTGTTTACAGG-GAACAGATCGAAGACATAGCAGATCTAAC
51094908 CTTCGGATGT
Statistics
Matches: 164, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
133 15 0.09
134 147 0.90
135 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (134 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTAACATTCCTGTGCT
TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
AGCA
Found at i:51094758 original size:44 final size:44
Alignment explanation
Indices: 51094586--51094863 Score: 170
Period size: 44 Copynumber: 6.2 Consensus size: 44
51094576 GATCCAAAAT
*
51094586 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGGCATAGTA
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAA-G-ATAGCA
* *** * * * * ***
51094632 GATCTAATATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA
1 GATTTGGCATCCCTGTGTTTACAGGGAA-CAGATCGAAGATAGCA
** * *
51094677 -ACATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCA
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGA-TCGAAGATAGCA
*
51094720 GATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCA
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAG--ATAGCA
* * * * * ** **
51094766 GATCTGACATTCCTGTGCTTCCAACGAAGCAGATCGAAGATTTCA
1 GATTTGGCATCCCTGTGTTTACAGGGAA-CAGATCGAAGATAGCA
* * * **
51094811 GCA--TGGCATCCCTGTGTTTATAGGGAACAAATCGAATA-AATA
1 G-ATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGATAGCA
51094853 GATTTGGCATC
1 GATTTGGCATC
51094864 TCCATATTCG
Statistics
Matches: 171, Mismatches: 51, Indels: 23
0.70 0.21 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 25 0.15
44 65 0.38
45 10 0.06
46 49 0.29
47 18 0.11
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGATAGCA
Found at i:51094949 original size:223 final size:220
Alignment explanation
Indices: 51094720--51095131 Score: 497
Period size: 220 Copynumber: 1.9 Consensus size: 220
51094710 GAAGATAGCA
** * * *
51094720 GATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGAC-ATTCCTGTGC
1 GATTTGGCATCCTTGCATTGACAAGGAACAGATCGAAGACATAGCAGATCTGACTATTAC-GTGC
* * * * * *
51094784 TTCCAAC-GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGT-GTTTATAGGGAACAAATCGAA
65 TTAC-ACTGAAGCAGATCGAAGA--TCA-CATGGCATCCCTGTACTGT-CAGAGAACAAATCAAA
* * *
51094847 TAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
125 GAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
51094912 GGATGTTTTCACATCGAAGTAGATCCAAGAT
190 GGATGTTTTCACATCGAAGTAGATCCAAGAT
* * * * *
51094943 GATTTGGCATCCTTGCATTGACAAGGAGCAGATCGAAGACATAGCAGATTTGCCTTTTACGTGTT
1 GATTTGGCATCCTTGCATTGACAAGGAACAGATCGAAGACATAGCAGATCTGACTATTACGTGCT
* * * ** *
51095008 TACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACA
66 TACACTGAAGCAGATCGAAGATCACATGGCATCCCTGTACTGTCAGAGAACAAATCAAAGAAACA
* * *
51095073 GATTTGGCATCTCCATATTCAACGGAGAGTAGATCGAAGACATAGTAGATCTGACCTTC
131 GATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
51095132 ATTGAAGCAG
Statistics
Matches: 158, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
220 83 0.53
221 4 0.03
222 1 0.01
223 67 0.42
224 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (220 bp):
GATTTGGCATCCTTGCATTGACAAGGAACAGATCGAAGACATAGCAGATCTGACTATTACGTGCT
TACACTGAAGCAGATCGAAGATCACATGGCATCCCTGTACTGTCAGAGAACAAATCAAAGAAACA
GATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
TTTCACATCGAAGTAGATCCAAGAT
Found at i:51095008 original size:89 final size:87
Alignment explanation
Indices: 51094879--51095040 Score: 204
Period size: 89 Copynumber: 1.8 Consensus size: 87
51094869 ATTCGACGGA
* *
51094879 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACAC-T-GAAGCAGATCCAAGATG
51094944 ATTTGGCATCCTTGCATTGACAAG
64 ATTTGGCATCCTTGCATTGACAAG
** * *
51094968 GAGCAGATCGAAGACATAGCAGAT-TTGCCTTTTAC-G-TGTTTACGCTGAAGCAGATCTAAGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACC--TT-CGGATGTTTACACTGAAGCAGATCCAAGAT
51095030 GATTTGGCATC
63 GATTTGGCATC
51095041 TCTGTACTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
87 25 0.39
88 4 0.06
89 31 0.48
90 3 0.05
91 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCATTGACAAG
Found at i:51095202 original size:78 final size:78
Alignment explanation
Indices: 51095073--51095493 Score: 623
Period size: 78 Copynumber: 5.4 Consensus size: 78
51095063 CAAAGAAACA
** * *
51095073 GATTTGGCATCTCCATATTCA-ACGGAGAGTAGATCGAAGACATAGTAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTGTATT-AGACGGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGA
51095137 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
51095151 GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGAA
*
51095216 GCAGATCAAAGAT
66 GCAGATCCAAGAT
* * *
51095229 GATTTGGCATATCTGTATTAGACGGGGAGTAGATCGAAGACATAATAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCT-GACCTTCATTGA
51095293 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
51095307 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGAA
51095372 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
51095385 GATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAATAGAT-TGGACTTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCT-GACCTTCATTGA
51095449 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
51095463 GATTTGGCATCTCTGTATTAGACGGGGAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCA
51095494 AATCAGAGAT
Statistics
Matches: 307, Mismatches: 32, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
77 3 0.01
78 303 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:51095357 original size:156 final size:156
Alignment explanation
Indices: 51095073--51095493 Score: 693
Period size: 156 Copynumber: 2.7 Consensus size: 156
51095063 CAAAGAAACA
* * * *
51095073 GATTTGGCATCTCCATATTCA-ACGGAGAGTAGATCGAAGACATAGTAGATCT-GACCTTCATTG
1 GATTTGGCATATCTATATT-AGACGGGGAGTAGATCGAAGACATAATAGAT-TGGACCTTCATTG
* *
51095136 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGACACAGCAGAT
64 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGAT
51095201 CTGACCTTCATTGAAGCAGATCAAAGAT
129 CTGACCTTCATTGAAGCAGATCAAAGAT
*
51095229 GATTTGGCATATCTGTATTAGACGGGGAGTAGATCGAAGACATAATAGATTGGACCTTCATTGAA
1 GATTTGGCATATCTATATTAGACGGGGAGTAGATCGAAGACATAATAGATTGGACCTTCATTGAA
*
51095294 GCAGATCCAAGATGATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
*
51095359 GACCTTCATTGAAGCAGATCCAAGAT
131 GACCTTCATTGAAGCAGATCAAAGAT
* * * *
51095385 GATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAATAGATTGGACTTTCATTGAA
1 GATTTGGCATATCTATATTAGACGGGGAGTAGATCGAAGACATAATAGATTGGACCTTCATTGAA
51095450 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCA
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCA
51095494 AATCAGAGAT
Statistics
Matches: 248, Mismatches: 15, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
155 2 0.01
156 246 0.99
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (156 bp):
GATTTGGCATATCTATATTAGACGGGGAGTAGATCGAAGACATAATAGATTGGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
GACCTTCATTGAAGCAGATCAAAGAT
Found at i:51095614 original size:89 final size:89
Alignment explanation
Indices: 51095463--51095630 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 89
51095453 GATCCAAGAT
* * *
51095463 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTA
1 GATTTCGCATCTCTATATTAGACGAGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTA
*
51095528 GACGGGGAGCAGATTGAAGAAGCA
66 GACGAGGAGCAGATTGAAGAAGCA
* * *
51095552 GATTTCGCGTCTCTATATTAGACGAGGAGCAGATC-GAAGATAACAGATTTGGCGTCTCTGTATT
1 GATTTCGCATCTCTATATTAGACGAGGAGCAAATCAG-AGATAACAGATTTGGCATCTCTGTATT
51095616 AGACGAGGAGCAGAT
65 AGACGAGGAGCAGAT
51095631 CAAATATAGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (89 bp):
GATTTCGCATCTCTATATTAGACGAGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTA
GACGAGGAGCAGATTGAAGAAGCA
Found at i:51095644 original size:45 final size:45
Alignment explanation
Indices: 51095463--51095644 Score: 231
Period size: 45 Copynumber: 4.1 Consensus size: 45
51095453 GATCCAAGAT
* * *
51095463 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGATAACA
* ** *
51095508 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGATAACA
* * * *
51095552 GATTTCGCGTCTCTATATTAGACGAGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGATAACA
* * *
51095597 GATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCAAATATAGCA
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGATAACA
51095642 GAT
1 GAT
51095645 ATCGCCTTCC
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 38 0.32
45 82 0.68
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGATAACA
Found at i:51095674 original size:89 final size:89
Alignment explanation
Indices: 51095472--51095649 Score: 250
Period size: 89 Copynumber: 2.0 Consensus size: 89
51095462 TGATTTGGCA
* * * *
51095472 TCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAGATTTGGCATCTCTGTATTAGACGGGGA
1 TCTCTATATTAGACGAGGAGCAGATCGA-AGATAACAGATTTGGCATCTCTGTATTAGACGAGGA
** *
51095536 GCAGATTGAAGAAGCAGATTTCGCG
65 GCAGATCAAAGAAGCAGATATCGCG
*
51095561 TCTCTATATTAGACGAGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGAGGAG
1 TCTCTATATTAGACGAGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGAGGAG
*
51095626 CAGATCAAATATAGCAGATATCGC
66 CAGATCAAAGA-AGCAGATATCGC
51095650 CTTCCTAAGT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
89 66 0.85
90 12 0.15
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (89 bp):
TCTCTATATTAGACGAGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGAGGAG
CAGATCAAAGAAGCAGATATCGCG
Found at i:51096014 original size:19 final size:19
Alignment explanation
Indices: 51095990--51096081 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
51095980 ATAATCTTCA
*
51095990 ATGATATGCAACCTTAGAT
1 ATGATATGCAATCTTAGAT
51096009 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
51096028 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
51096047 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
51096064 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
51096082 AGATATGATT
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
17 17 0.24
19 53 0.76
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:51096022 original size:36 final size:38
Alignment explanation
Indices: 51095990--51096088 Score: 161
Period size: 36 Copynumber: 2.7 Consensus size: 38
51095980 ATAATCTTCA
*
51095990 ATGATATGCAACCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
51096028 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
51096064 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATATGCAATCTTAGATATGATATG
51096089 ATTTTGTAAT
Statistics
Matches: 58, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
34 4 0.07
35 1 0.02
36 29 0.50
38 24 0.41
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:51096107 original size:22 final size:22
Alignment explanation
Indices: 51095990--51096104 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
51095980 ATAATCTTCA
*
51095990 ATGATATGCAACCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
51096009 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
51096028 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
51096047 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
51096064 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
51096086 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
51096105 GATTTAATTT
Statistics
Matches: 87, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
17 17 0.20
19 50 0.57
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:51097516 original size:12 final size:12
Alignment explanation
Indices: 51097501--51097526 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51097491 CAAAACTCGA
51097501 TTTAAAAATGGT
1 TTTAAAAATGGT
51097513 TTTAAAAATGGT
1 TTTAAAAATGGT
51097525 TT
1 TT
51097527 CGACAACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:51097951 original size:5 final size:5
Alignment explanation
Indices: 51097941--51097977 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
51097931 TTAGATAAAC
51097941 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA AT
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA AT
51097978 GATTGTAGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
ATCTA
Found at i:51100739 original size:32 final size:32
Alignment explanation
Indices: 51100698--51100761 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
51100688 TATAACTATA
51100698 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
51100730 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
51100762 ATTTTTTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:51103592 original size:47 final size:47
Alignment explanation
Indices: 51103529--51103832 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
51103519 CCCTTCGGGA
* * *
51103529 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * *
51103576 CTTATCACATATATACACTTTCACATTCATCACATTGGGCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51103623 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
51103670 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51103717 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51103764 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51103813 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
51103833 GTACATCAAT
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 191 0.81
49 45 0.19
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:51107242 original size:40 final size:40
Alignment explanation
Indices: 51107198--51107586 Score: 591
Period size: 40 Copynumber: 9.8 Consensus size: 40
51107188 CCAGCATGAT
* * * *
51107198 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
51107238 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
51107278 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
51107318 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
51107358 TGCTCTTCAGAATTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
51107398 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51107438 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51107478 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
51107518 TGCTCTTCGGGACTTAGCCCAGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
51107558 TGCTCTTCGAGACTTAGCCCGGAT-CATCA
1 TGCTCTTCGGGACTTAGCCCGGATACATCA
51107587 TCGAGACCTT
Statistics
Matches: 319, Mismatches: 30, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 5 0.02
40 314 0.98
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:51107708 original size:38 final size:38
Alignment explanation
Indices: 51107639--51107713 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
51107629 GAATTTTAAT
*
51107639 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
51107677 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
51107714 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:51110205 original size:47 final size:47
Alignment explanation
Indices: 51110142--51110445 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
51110132 CCCTTCGGGA
* * *
51110142 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * *
51110189 CTTATCACATATATACACTTTCACATTCATCACATTGGGCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51110236 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
51110283 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51110330 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51110377 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
51110426 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
51110446 GTACATCAAT
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 191 0.81
49 45 0.19
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:51113940 original size:21 final size:21
Alignment explanation
Indices: 51113916--51113965 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
51113906 CATTGTTTCT
*
51113916 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
51113937 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
51113958 AATCTCAC
1 AATCTCAC
51113966 AGCCATCGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.24
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:51115661 original size:21 final size:22
Alignment explanation
Indices: 51115602--51115665 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
51115592 CATAAGCAGT
* * *
51115602 ATACGACACATAAAATGTCTGA
1 ATACGACACATATAGTGCCTGA
** *
51115624 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
51115644 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
51115666 TGACGAAGCT
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:51116168 original size:17 final size:18
Alignment explanation
Indices: 51116146--51116180 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51116136 TAATCCTAAT
*
51116146 TAACTC-ATTTACTTTTC
1 TAACTCAATTCACTTTTC
51116163 TAACTCAATTCACTTTTC
1 TAACTCAATTCACTTTTC
51116181 ATTTCTACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (18 bp):
TAACTCAATTCACTTTTC
Found at i:51116922 original size:9 final size:9
Alignment explanation
Indices: 51116904--51116974 Score: 84
Period size: 9 Copynumber: 8.6 Consensus size: 9
51116894 AATTTATTCC
51116904 ATAA-TATA
1 ATAATTATA
51116912 ATAATTATA
1 ATAATTATA
51116921 ATAATTATA
1 ATAATTATA
51116930 ATAATTATA
1 ATAATTATA
51116939 ATAA-TATA
1 ATAATTATA
51116947 A-ACA--ATA
1 ATA-ATTATA
51116954 ATAA-T-TA
1 ATAATTATA
51116961 ATAATTATA
1 ATAATTATA
51116970 ATAAT
1 ATAAT
51116975 AAATATCTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
7 12 0.21
8 12 0.21
9 33 0.58
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (9 bp):
ATAATTATA
Found at i:51116924 original size:3 final size:3
Alignment explanation
Indices: 51116904--51116976 Score: 69
Period size: 3 Copynumber: 24.3 Consensus size: 3
51116894 AATTTATTCC
* * *
51116904 ATA AT- ATA ATA ATT ATA ATA ATT ATA ATA ATT ATA ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* *
51116948 ACA ATA ATA ATTA ATA ATT ATA ATA ATA A
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA A
51116977 ATATCTATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
2 4 0.07
3 48 0.86
4 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:51116931 original size:18 final size:17
Alignment explanation
Indices: 51116904--51116979 Score: 99
Period size: 18 Copynumber: 4.6 Consensus size: 17
51116894 AATTTATTCC
51116904 ATAATATAATAATTATA
1 ATAATATAATAATTATA
51116921 ATAATTATAATAATTATA
1 ATAA-TATAATAATTATA
51116939 ATAATATAA-ACA--ATA
1 ATAATATAATA-ATTATA
51116954 ATAAT-TAATAATTATA
1 ATAATATAATAATTATA
51116970 ATAATA-AATA
1 ATAATATAATA
51116980 TCTATTTAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 13
0.80 0.00 0.20
Matches are distributed among these distances:
14 4 0.08
15 9 0.17
16 13 0.25
17 10 0.19
18 17 0.32
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATATAATAATTATA
Found at i:51122869 original size:26 final size:26
Alignment explanation
Indices: 51122840--51122921 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
51122830 TGGTACAAAT
51122840 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51122866 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51122892 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51122918 TGAT
1 TGAT
51122922 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51124955 original size:137 final size:137
Alignment explanation
Indices: 51124709--51124995 Score: 493
Period size: 137 Copynumber: 2.1 Consensus size: 137
51124699 GAGTAGTCTC
*
51124709 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCTTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
** *
51124774 TGTTATCTGAATAAGGGGCTAAGTTCCGGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
51124839 ACTGTTA
131 ACTGTTA
51124846 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
51124911 TGTTATTTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAATGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
51124976 ACTGTTA
131 ACTGTTA
**
51124983 CCTGAATGGGCTT
1 CCCAAATGGGCTT
51124996 AGGCCCAATA
Statistics
Matches: 141, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 141 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:51126415 original size:22 final size:22
Alignment explanation
Indices: 51126390--51126435 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
51126380 CTAAGACTGA
* *
51126390 TCGTGTTGGCTTCCTCCCATTC
1 TCGTGGTGGCTTCCTCCAATTC
51126412 TCGTGGTGGCTTCCTCCAATTC
1 TCGTGGTGGCTTCCTCCAATTC
51126434 TC
1 TC
51126436 ACAATTGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.07, C:0.35, G:0.20, T:0.39
Consensus pattern (22 bp):
TCGTGGTGGCTTCCTCCAATTC
Found at i:51128353 original size:13 final size:13
Alignment explanation
Indices: 51128337--51128362 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51128327 ACTTTAAGCA
51128337 AACAAATGGTTTT
1 AACAAATGGTTTT
51128350 AACAAATGGTTTT
1 AACAAATGGTTTT
51128363 TGGAAACACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:51134819 original size:27 final size:27
Alignment explanation
Indices: 51134736--51134839 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
51134726 AAGTCTGTTA
* * *
51134736 AGACAATAAACACGGGGTAGTCCA-CT
1 AGACAGTAAACACGAGGTAGTCCATCG
* *
51134762 AGGACAGTAAACATGAGGTAGTCCATTG
1 A-GACAGTAAACACGAGGTAGTCCATCG
* *
51134790 AGATAGCT-AACACGAGGTAGTCTATCG
1 AGACAG-TAAACACGAGGTAGTCCATCG
*
51134817 AGACAGTAAACACGGGGTAGTCC
1 AGACAGTAAACACGAGGTAGTCC
51134840 GCCAAGACAG
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
26 2 0.03
27 58 0.94
28 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (27 bp):
AGACAGTAAACACGAGGTAGTCCATCG
Found at i:51134847 original size:27 final size:27
Alignment explanation
Indices: 51134735--51134872 Score: 89
Period size: 27 Copynumber: 5.1 Consensus size: 27
51134725 AAAGTCTGTT
* * *
51134735 AAGACAATAAACACGGGGTAGTCCACT
1 AAGACAGTAAACACGAGGTAGTCCACC
* * **
51134762 AGGACAGTAAACATGAGGTAGTCCATT
1 AAGACAGTAAACACGAGGTAGTCCACC
* * * *
51134789 GAGATAGCT-AACACGAGGTAGTCTATC
1 AAGACAG-TAAACACGAGGTAGTCCACC
* * *
51134816 GAGACAGTAAACACGGGGTAGTCCGCC
1 AAGACAGTAAACACGAGGTAGTCCACC
* * * **
51134843 AAGACAGAAAACTCAAGAAAGTCCACC
1 AAGACAGTAAACACGAGGTAGTCCACC
51134870 AAG
1 AAG
51134873 GTGTAAAACA
Statistics
Matches: 85, Mismatches: 24, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.15
Consensus pattern (27 bp):
AAGACAGTAAACACGAGGTAGTCCACC
Found at i:51151265 original size:27 final size:27
Alignment explanation
Indices: 51151234--51151337 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
51151224 CTGTCTTGGC
*
51151234 GGACTACCCCGTGTTTACTGTCTCGAT
1 GGACTACCCCGTGTTTACTGTCTCAAT
* * *
51151261 AGACTACCTCGTG-TTAGCTATCTCAAT
1 GGACTACCCCGTGTTTA-CTGTCTCAAT
* * *
51151288 GGACTACCTCATGTTTACTGTC-CTAGT
1 GGACTACCCCGTGTTTACTGTCTC-AAT
*
51151315 GGACTACCCCGTGTTTATTGTCT
1 GGACTACCCCGTGTTTACTGTCT
51151338 TAACAGACTT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 4 0.06
27 55 0.89
28 3 0.05
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (27 bp):
GGACTACCCCGTGTTTACTGTCTCAAT
Found at i:51157680 original size:13 final size:13
Alignment explanation
Indices: 51157662--51157687 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51157652 CGTGTTTCCA
51157662 AAAACCATTTGTT
1 AAAACCATTTGTT
51157675 AAAACCATTTGTT
1 AAAACCATTTGTT
51157688 TGCTTAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:51182762 original size:43 final size:43
Alignment explanation
Indices: 51182713--51182799 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
51182703 CCTAATCATT
* * *
51182713 ACAATTAGGGACTCAAATCTAATCTGGGCCCAACCTTTTGTGA
1 ACAATTACGGACTCAAATCTAACCCGGGCCCAACCTTTTGTGA
*
51182756 ACAATTACGGACTCGAATCTAACCCGGGCCCAACCTTTTGTGA
1 ACAATTACGGACTCAAATCTAACCCGGGCCCAACCTTTTGTGA
51182799 A
1 A
51182800 GAATATGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ACAATTACGGACTCAAATCTAACCCGGGCCCAACCTTTTGTGA
Found at i:51184987 original size:39 final size:39
Alignment explanation
Indices: 51184939--51185018 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
51184929 GTTTTCATTA
51184939 TGAACGTTGCATGCATCTACCAGTGGATTGTTTGTTTTC
1 TGAACGTTGCATGCATCTACCAGTGGATTGTTTGTTTTC
*
51184978 TGAACGTTGCATGCATCTACCAGTTGATTGTTTGTTTTC
1 TGAACGTTGCATGCATCTACCAGTGGATTGTTTGTTTTC
51185017 TG
1 TG
51185019 TCTTTCTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.42
Consensus pattern (39 bp):
TGAACGTTGCATGCATCTACCAGTGGATTGTTTGTTTTC
Found at i:51195197 original size:15 final size:16
Alignment explanation
Indices: 51195169--51195199 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
51195159 TAACATGTAT
51195169 TATATTTCTAAAAATA
1 TATATTTCTAAAAATA
51195185 TATATTT-TAAAAATA
1 TATATTTCTAAAAATA
51195200 AAATACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATATTTCTAAAAATA
Found at i:51196682 original size:21 final size:21
Alignment explanation
Indices: 51196635--51196689 Score: 51
Period size: 24 Copynumber: 2.6 Consensus size: 21
51196625 CATTCAAGAT
* *
51196635 AAAATAATATTATAAAACTCTTTA
1 AAAATAATA-TA-AAAACT-ATTC
51196659 AAAATAATATAAAAAC-ATTC
1 AAAATAATATAAAAACTATTC
51196679 AAAAT-ATATAA
1 AAAATAATATAA
51196690 TGTGTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 6 0.21
20 7 0.24
22 5 0.17
23 2 0.07
24 9 0.31
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATAATATAAAAACTATTC
Found at i:51196932 original size:23 final size:23
Alignment explanation
Indices: 51196866--51196932 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 23
51196856 TATAAGAAAA
*
51196866 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
*
51196886 AGTATATAAACAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
51196909 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
51196932 A
1 A
51196933 GTAGAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
20 1 0.03
21 14 0.38
22 6 0.16
23 9 0.24
24 6 0.16
25 1 0.03
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.28
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:51196939 original size:17 final size:15
Alignment explanation
Indices: 51196899--51196944 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
51196889 ATATAAACAG
*
51196899 AAATAAAAATATAAT
1 AAATAGAAATATAAT
51196914 AAATAGAAATATAAT
1 AAATAGAAATATAAT
51196929 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
51196945 ATGGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:51197882 original size:32 final size:29
Alignment explanation
Indices: 51197796--51197885 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 29
51197786 TAAAAAAAAT
51197796 TATATTTTTTGATTTTTTGAATTTTTATTTG
1 TATA-TTTTTGATTTTTT-AATTTTTATTTG
*
51197827 TATATTTTGGATTTTTAAATAATTTTTATCTTG
1 TATATTTTTGATTTTT---TAATTTTTAT-TTG
*
51197860 ATATATTTTTAATTTTGTTAATTTTT
1 -TATATTTTTGATTTT-TTAATTTTT
51197886 GAAATTATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
30 11 0.22
31 4 0.08
32 17 0.34
33 4 0.08
34 13 0.26
35 1 0.02
ACGTcount: A:0.24, C:0.01, G:0.08, T:0.67
Consensus pattern (29 bp):
TATATTTTTGATTTTTTAATTTTTATTTG
Found at i:51199931 original size:20 final size:22
Alignment explanation
Indices: 51199900--51199947 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
51199890 ATAATTACGT
51199900 TTATTTTCTTTAAATTAA-GAA
1 TTATTTTCTTTAAATTAATGAA
* *
51199921 TTATTTT-TTTAATTTAATGTA
1 TTATTTTCTTTAAATTAATGAA
51199942 TTATTT
1 TTATTT
51199948 ATTTGTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (22 bp):
TTATTTTCTTTAAATTAATGAA
Found at i:51202195 original size:26 final size:26
Alignment explanation
Indices: 51202166--51202273 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
51202156 TGGTACAAAT
51202166 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51202192 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51202218 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51202244 TGATAATGGTTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
51202270 TGAT
1 TGAT
51202274 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51210374 original size:81 final size:81
Alignment explanation
Indices: 51210281--51210434 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
51210271 ACTTGCAGCA
* *
51210281 TCAACCTCACCACCTTTACTGCCATCAACATCAACACCCTCCCTATTTAAACCTTCAACACCCTC
1 TCAACCTCACCACCTTTACTGCCAACAACATCAACACCCTCCCCATTTAAACCTTCAACACCCTC
51210346 ACCACCTTCATCAATT
66 ACCACCTTCATCAATT
* * *
51210362 TCAACCTCACCACTTTTACTGCCAACAACCTCAACACCCTCCCCATTTAAACCTTCACCACCCTC
1 TCAACCTCACCACCTTTACTGCCAACAACATCAACACCCTCCCCATTTAAACCTTCAACACCCTC
51210427 ACCACCTT
66 ACCACCTT
51210435 GATTACCATC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.29, C:0.45, G:0.01, T:0.25
Consensus pattern (81 bp):
TCAACCTCACCACCTTTACTGCCAACAACATCAACACCCTCCCCATTTAAACCTTCAACACCCTC
ACCACCTTCATCAATT
Found at i:51214380 original size:19 final size:19
Alignment explanation
Indices: 51214356--51214393 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
51214346 CAAAAAGTAT
51214356 AATGAAACATGTAGATTTG
1 AATGAAACATGTAGATTTG
51214375 AATGAAACATGTAGATTTG
1 AATGAAACATGTAGATTTG
51214394 TCAAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (19 bp):
AATGAAACATGTAGATTTG
Found at i:51215373 original size:21 final size:22
Alignment explanation
Indices: 51215340--51215383 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
51215330 AATTAAAATG
*
51215340 CATTATTTTATATAA-TTCATA
1 CATTATTTCATATAATTTCATA
*
51215361 CATTGTTTCATATAATTTCATA
1 CATTATTTCATATAATTTCATA
51215383 C
1 C
51215384 TATTTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.34, C:0.14, G:0.02, T:0.50
Consensus pattern (22 bp):
CATTATTTCATATAATTTCATA
Found at i:51217597 original size:17 final size:17
Alignment explanation
Indices: 51217575--51217607 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
51217565 ATATACAATA
51217575 TATTCACAATTTACTTG
1 TATTCACAATTTACTTG
*
51217592 TATTCACACTTTACTT
1 TATTCACAATTTACTT
51217608 CTTAACAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.21, G:0.03, T:0.48
Consensus pattern (17 bp):
TATTCACAATTTACTTG
Found at i:51217723 original size:13 final size:14
Alignment explanation
Indices: 51217707--51217742 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
51217697 CAATCTCATA
51217707 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
51217720 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
51217733 TCTC-ATTTCA
1 TCTCAATTTCA
51217743 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:51217732 original size:18 final size:19
Alignment explanation
Indices: 51217694--51217734 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
51217684 TGGTTCATGT
51217694 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
51217713 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
51217731 TTTC
1 TTTC
51217735 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:51217977 original size:23 final size:23
Alignment explanation
Indices: 51217896--51217981 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 23
51217886 CTGATCAGAG
*
51217896 TACGACACATAAAGTGCCT-AAA
1 TACGACACACAAAGTGCCTGAAA
* *
51217918 -ACGACACACGAGGTGCCTG--A
1 TACGACACACAAAGTGCCTGAAA
* *
51217938 TACGACACACGAGGTGCCTGAAA
1 TACGACACACAAAGTGCCTGAAA
*
51217961 TACGACACATAAAGTGCCTGA
1 TACGACACACAAAGTGCCTGA
51217982 TCGATAAAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
23 19 0.35
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (23 bp):
TACGACACACAAAGTGCCTGAAA
Found at i:51218382 original size:15 final size:15
Alignment explanation
Indices: 51218358--51218395 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
51218348 ATATATATAT
*
51218358 TATAATTTCAATCAA
1 TATAAATTCAATCAA
51218373 TATAAATTCAATCAA
1 TATAAATTCAATCAA
51218388 TATAAATT
1 TATAAATT
51218396 TGATAAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:51219139 original size:18 final size:17
Alignment explanation
Indices: 51219116--51219161 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
51219106 TTGTTTCTTC
51219116 TCTGTTTCGTTTCCACAT
1 TCTGTTTC-TTTCCACAT
*
51219134 TCTGTTTCTTT--TCAT
1 TCTGTTTCTTTCCACAT
51219149 TCTGTTTCTTTCC
1 TCTGTTTCTTTCC
51219162 TTTATTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 14 0.56
17 3 0.12
18 8 0.32
ACGTcount: A:0.07, C:0.26, G:0.09, T:0.59
Consensus pattern (17 bp):
TCTGTTTCTTTCCACAT
Found at i:51219389 original size:21 final size:22
Alignment explanation
Indices: 51219336--51219390 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
51219326 CAATTTAAAT
*
51219336 AATAATAACAATAACAATAATA
1 AATAATAATAATAACAATAATA
* *
51219358 ATTAA-ATATAA-AACTATAATA
1 AATAATA-ATAATAACAATAATA
51219379 AATAATAATAAT
1 AATAATAATAAT
51219391 TTAATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
AATAATAATAATAACAATAATA
Found at i:51222211 original size:55 final size:55
Alignment explanation
Indices: 51222086--51222217 Score: 205
Period size: 55 Copynumber: 2.4 Consensus size: 55
51222076 CCCTTAGCCT
* * *
51222086 GTGTGCAACACTAACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTACTC
1 GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTACCC
51222141 GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTACCC
1 GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTACCC
*
51222196 GTGTACTAA-ATTGAC-TTAAAAC
1 GTGTAC-AACACTGACTTTAAAAC
51222218 TTTAAGTTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
54 7 0.10
55 63 0.88
56 2 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (55 bp):
GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTACCC
Found at i:51225079 original size:23 final size:22
Alignment explanation
Indices: 51225027--51225079 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
51225017 TCCACGTCTT
*
51225027 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
51225049 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
51225072 TTTCTTTT
1 TTTCTTTT
51225080 TCACTCCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:51228263 original size:29 final size:29
Alignment explanation
Indices: 51228221--51228276 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
51228211 AAATTCACAT
* *
51228221 CTTTGGTAAATGACCATGTTGCCCCTAGA
1 CTTTGGCAAATGACCATGTTACCCCTAGA
*
51228250 CTTTGGCAAATGACCATTTTACCCCTA
1 CTTTGGCAAATGACCATGTTACCCCTA
51228277 TGCTCAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (29 bp):
CTTTGGCAAATGACCATGTTACCCCTAGA
Found at i:51229339 original size:31 final size:29
Alignment explanation
Indices: 51229304--51229365 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 29
51229294 TGTGAAGTGT
*
51229304 AAGACCATAGC-AGAGTTATGGCATAGTGTGA
1 AAGACCATAACTAG-GTTATGGCAT--TGTGA
51229335 AAGACCATAACTAGGTTATGGCATTGTGA
1 AAGACCATAACTAGGTTATGGCATTGTGA
51229364 AA
1 AA
51229366 TTGAACGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 7 0.24
31 20 0.69
32 2 0.07
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
AAGACCATAACTAGGTTATGGCATTGTGA
Found at i:51229953 original size:2 final size:2
Alignment explanation
Indices: 51229948--51229974 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51229938 TATATATATA
51229948 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
51229975 TTAATAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:51234408 original size:27 final size:25
Alignment explanation
Indices: 51234330--51234427 Score: 151
Period size: 25 Copynumber: 3.8 Consensus size: 25
51234320 CCTCTTTAAT
*
51234330 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAATA
*
51234355 AACTAGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
51234380 AACTGGGGCAAAAGCCCTTTTTCAATA
1 AACTGGGGC-AAAGCCC-TTTTCAATA
51234407 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
51234428 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
25 31 0.46
26 12 0.18
27 24 0.36
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:51238415 original size:58 final size:57
Alignment explanation
Indices: 51238353--51238544 Score: 213
Period size: 58 Copynumber: 3.3 Consensus size: 57
51238343 TAAACTTGCA
* * **
51238353 AAAATTTTGAAAGATAATCTGTTAGGGATGTGAACCTGCGGGCTATTTTATACTTACG
1 AAAATTTTGAAAGATAATCAGTTAGGGATGTGAA-TTGCAAGCTATTTTATACTTACG
* * * *
51238411 AAAATCTTGAAAGATAATCAGCTAGGGATGTGAATTCGCAAGCTATTTCATACTTAAG
1 AAAATTTTGAAAGATAATCAGTTAGGGATGTGAATT-GCAAGCTATTTTATACTTACG
* * * * * * *
51238469 AAAATTTTGAAAGGTAATACAGTTGGGGATGTTAATTTGTAAGCTATGTTAGACTTGCG
1 AAAATTTTGAAAGATAAT-CAGTTAGGGATGTGAA-TTGCAAGCTATTTTATACTTACG
51238528 AAAATTTTGAAAGATAA
1 AAAATTTTGAAAGATAA
51238545 ACAGGTGAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
57 1 0.01
58 64 0.58
59 44 0.40
60 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (57 bp):
AAAATTTTGAAAGATAATCAGTTAGGGATGTGAATTGCAAGCTATTTTATACTTACG
Found at i:51238915 original size:138 final size:136
Alignment explanation
Indices: 51238632--51239414 Score: 478
Period size: 138 Copynumber: 5.7 Consensus size: 136
51238622 AGGAGCTTTA
* * * * ** * * *
51238632 CTCTCATTAACTATGTTGGATGCTGCGGCTCTTTGCCTACAAGCCTTAATAT-AAAACTGGGAGC
1 CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
** ** * * * * *
51238696 TTGCTCTTTCTAATTGTGTTGGAAGCTGCGGCTCTTCA-TTGGCAAGCCTTAGTATGACAACTGA
66 TTTATCTCACTAATTGTGTTGGAGGCTGCGGCTCTTCACCT-ACAAGCCTTAATATGAAAACTGA
51238760 GAG-CTTTG
130 -AGTC-TTG
* * * * *
51238768 CTCTCACTAACTGTGTTGGAGGCTGTAGCTCTTCGCCTGTAAACCTTAATATGACAGTTTAGAGC
1 CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
* *
51238833 TTTAATCTCACTAATTGTGTTGGAGGTTGCGGCTCTTTACCTACAAGCCTTAATATGAAAACTAG
66 TTT-ATCTCACTAATTGTGTTGGAGGCTGCGGCTCTTCACCTACAAGCCTTAATATGAAAACT-G
*
51238898 AAGTCTTA
129 AAGTCTTG
* *** * * * * * * *
51238906 CTCTTACTAACTATGTTGGAAATTGTGGCTCTTCACCGGTGAGCATTAGTATGACAGTTGGGAGC
1 CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
* * * * * * * *
51238971 --T-T-T-GCTAACTGTGTTGGATGCTGCGACTTTTCACGTACAAGCATTAATAT-AACAGCTAG
66 TTTATCTCACTAATTGTGTTGGAGGCTGCGGCTCTTCACCTACAAGCCTTAATATGAA-AACT--
** *
51239030 GATTTTTTG
128 GAAGTCTTG
* ** * * *
51239039 -TCTCACTAACTGTGTTGGAGGCTGTGGCTCTTCGCCTACAAGCCTTAATGTGATAGCTGAAAGC
1 CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
* * * * * * * ***
51239103 TTTGGTTTCATTAATTGTGTTGGAGGATACAGCTCTTCGCCTTTGAGCCTTAATAT-AACAATCT
66 TTT-ATCTCACTAATTGTGTTGGAGGCTGCGGCTCTTCACCTACAAGCCTTAATATGAA-AA-CT
*
51239167 GAAG-CTTTT
128 GAAGTC-TTG
** * * * * * *
51239176 CTCTCGGTAACTATGTTGGAGGTTGCGGCTCTTCACCTGCAAGCCTTAATATGACAACTGAAAGC
1 CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
* * * ** * * *
51239241 TTTACTCTCACTGACTGTGTTGGAGGTTGCAAC-CTTCACCTGCAAGCCTTAATAAGACAACTGG
66 TTTA-TCTCACTAATTGTGTTGGAGGCTGCGGCTCTTCACCTACAAGCCTTAATATGAAAACT--
*
51239305 GAACT-TTG
128 GAAGTCTTG
* * * * * *
51239313 CTCTCGCTAACTATGTTGGAGGATGTGACTCTTCGCTTGTGAGCCTTAATATGACAGCTAAGAGC
1 CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
* * ** * *
51239378 TTTGCTCTCGCTAGCTATGTTGGAGGCTGCAGCTCTT
66 TTT-ATCTCACTAATTGTGTTGGAGGCTGCGGCTCTT
51239415 TGCCTGAAAA
Statistics
Matches: 488, Mismatches: 136, Indels: 44
0.73 0.20 0.07
Matches are distributed among these distances:
131 2 0.00
132 88 0.18
133 6 0.01
134 2 0.00
136 47 0.10
137 114 0.23
138 223 0.46
139 6 0.01
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (136 bp):
CTCTCACTAACTATGTTGGAGGCTGTGGCTCTTCGCCTGTAAGCCTTAATATGACAGCTGAGAGC
TTTATCTCACTAATTGTGTTGGAGGCTGCGGCTCTTCACCTACAAGCCTTAATATGAAAACTGAA
GTCTTG
Found at i:51239431 original size:69 final size:69
Alignment explanation
Indices: 51238563--51239414 Score: 358
Period size: 69 Copynumber: 12.5 Consensus size: 69
51238553 GAGTTTTCAA
* * * * * * * * ** *
51238563 CTCTCACTAACTATGTTGGAAGCTGCAGCTC-TCAGTCGGTAAGCCTTAGTATGATAGTTAGGAG
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCA-CCTGCAAGCCTTAATATGACAACTAAGAG
*
51238627 CTTTA
65 CTTTG
** * * * ** * * **
51238632 CTCTCATTAACTATGTTGGATGCTGCGGCTCTTTGCCTACAAGCCTTAATAT-AAAACTGGGAGC
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAGAGC
51238696 -TTG
66 TTTG
** * * * * * * * *
51238699 CTCTTTCTAATTGTGTTGGAAGCTGCGGCTCTTCA-TTGGCAAGCCTTAGTATGACAACTGAGAG
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCT-GCAAGCCTTAATATGACAACTAAGAG
51238763 CTTTG
65 CTTTG
* * * * * * * ** *
51238768 CTCTCACTAACTGTGTTGGAGGCTGTAGCTCTTCGCCTGTAAACCTTAATATGACAGTTTAGAGC
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAGAGC
*
51238833 TTTA
66 TTTG
* * * * * * * *
51238837 ATCTCACTAATTGTGTTGGAGGTTGCGGCTCTTTACCTACAAGCCTTAATATGAAAACT-AGAAG
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAG-AG
*
51238901 -TCTTA
65 CT-TTG
** ** ** * ** * * ** **
51238906 CTCTTACTAACTATGTTGGAAATTGTGGCTCTTCACCGGTGAGCATTAGTATGACAGTTGGGAGC
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAGAGC
51238971 --T-
66 TTTG
* * * * * * * * * *
51238972 -T-T-GCTAACTGTGTTGGATGCTGC-GACTTTTCACGTACAAGCATTAATATAACAGCTAGGAT
1 CTCTCGCTAACTATGTTGGAGGTTGCAG-CTCTTCACCTGCAAGCCTTAATATGACAACTAAGA-
**
51239033 TTTTTG
64 GCTTTG
* * * ** * * * * *
51239039 -TCTCACTAACTGTGTTGGAGGCTGTGGCTCTTCGCCTACAAGCCTTAATGTGATAGCTGAA-AG
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACT-AAGAG
51239102 CTTTG
65 CTTTG
* * ** * * * * * *** * *
51239107 GTTTCATTAATTGTGTTGGAGGATACAGCTCTTCGCCTTTGAGCCTTAATATAACAATCTGA-AG
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAA-CTAAGAG
*
51239171 CTTTT
65 CTTTG
* *
51239176 CTCTCGGTAACTATGTTGGAGGTTGCGGCTCTTCACCTGCAAGCCTTAATATGACAACTGAA-AG
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACT-AAGAG
*
51239240 CTTTA
65 CTTTG
* * * * * ** *
51239245 CTCTCACTGACTGTGTTGGAGGTTGCAAC-CTTCACCTGCAAGCCTTAATAAGACAACTGGGAAC
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAGAGC
51239309 TTTG
66 TTTG
* * ** *
51239313 CTCTCGCTAACTATGTTGGAGGATGTG-A-CTCTTCGCTTGTGAGCCTTAATATGACAGCTAAGA
1 CTCTCGCTAACTATGTTGGAGG-T-TGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAGA
51239376 GCTTTG
64 GCTTTG
* *
51239382 CTCTCGCTAGCTATGTTGGAGGCTGCAGCTCTT
1 CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTT
51239415 TGCCTGAAAA
Statistics
Matches: 594, Mismatches: 162, Indels: 54
0.73 0.20 0.07
Matches are distributed among these distances:
62 1 0.00
63 40 0.07
64 1 0.00
65 1 0.00
66 2 0.00
67 45 0.08
68 82 0.14
69 413 0.70
70 9 0.02
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (69 bp):
CTCTCGCTAACTATGTTGGAGGTTGCAGCTCTTCACCTGCAAGCCTTAATATGACAACTAAGAGC
TTTG
Found at i:51244438 original size:42 final size:41
Alignment explanation
Indices: 51244327--51244450 Score: 133
Period size: 41 Copynumber: 3.0 Consensus size: 41
51244317 GTGTCAATGC
** *
51244327 CATATCCCAGACATGGTCTTACATGGGACCTCATATCGATG
1 CATATCCCAGACATGGTCTTACATGAAATCTCATATCGATG
* * * *
51244368 CATGTCCTAGACATGATCTTACACGAAATCTCATATC-AGTG
1 CATATCCCAGACATGGTCTTACATGAAATCTCATATCGA-TG
* * *
51244409 TCATATCCCAGATATGGTCTTACATGAAATCACATACCGATG
1 -CATATCCCAGACATGGTCTTACATGAAATCTCATATCGATG
51244451 TTGATGCCAT
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
40 1 0.02
41 32 0.48
42 32 0.48
43 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (41 bp):
CATATCCCAGACATGGTCTTACATGAAATCTCATATCGATG
Found at i:51248059 original size:23 final size:25
Alignment explanation
Indices: 51248028--51248085 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
51248018 CGGATGGCCA
* *
51248028 TATATCAGGAAGTTTA-AAAGAGCC
1 TATATCAGGAAGCTCACAAAGAGCC
51248052 -ATATCAGGAAGCTCACAAAGAGCC
1 TATATCAGGAAGCTCACAAAGAGCC
*
51248076 TATGTCAGGA
1 TATATCAGGA
51248086 CAATCATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.45
24 8 0.28
25 8 0.28
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (25 bp):
TATATCAGGAAGCTCACAAAGAGCC
Found at i:51252378 original size:21 final size:21
Alignment explanation
Indices: 51252354--51252395 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
51252344 AATCTTTGGT
51252354 TCAGATACTTTAGTATCCAAC
1 TCAGATACTTTAGTATCCAAC
51252375 TCAGATACTTTAGTATCCAAC
1 TCAGATACTTTAGTATCCAAC
51252396 ACATATGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (21 bp):
TCAGATACTTTAGTATCCAAC
Found at i:51252838 original size:5 final size:5
Alignment explanation
Indices: 51252828--51252857 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
51252818 GATGAAACAG
51252828 AAAGA AAAGA AAA-A AAAGA AAAGA AAAGA A
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA A
51252858 TAAATTTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:51252847 original size:14 final size:14
Alignment explanation
Indices: 51252828--51252854 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51252818 GATGAAACAG
51252828 AAAGAAAAGAAAAA
1 AAAGAAAAGAAAAA
51252842 AAAGAAAAGAAAA
1 AAAGAAAAGAAAA
51252855 GAATAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAGAAAAGAAAAA
Found at i:51266691 original size:19 final size:19
Alignment explanation
Indices: 51266667--51266705 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
51266657 TAAAATTTTA
*
51266667 ATATTTTATTT-TATAGAAT
1 ATATTTT-TTTATATAAAAT
51266686 ATATTTTTTTATATAAAAT
1 ATATTTTTTTATATAAAAT
51266705 A
1 A
51266706 AAGTTCCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
ATATTTTTTTATATAAAAT
Found at i:51266695 original size:17 final size:17
Alignment explanation
Indices: 51266666--51266698 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51266656 CTAAAATTTT
51266666 AATATTTTATTTTATAG
1 AATATTTTATTTTATAG
51266683 AATATATTT-TTTTATA
1 AATAT-TTTATTTTATA
51266699 TAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
AATATTTTATTTTATAG
Found at i:51269728 original size:17 final size:17
Alignment explanation
Indices: 51269708--51269741 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51269698 AAAAATACAT
51269708 AAATAAATTTAAATTTA
1 AAATAAATTTAAATTTA
* *
51269725 AAATATATTTATATTTA
1 AAATAAATTTAAATTTA
51269742 TATTTTTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAATAAATTTAAATTTA
Found at i:51277098 original size:28 final size:28
Alignment explanation
Indices: 51277045--51277099 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
51277035 ATTTTACATC
* *
51277045 AATAAAATTAACATAACCTTTTTTTAAA
1 AATAAAATTAACACAACATTTTTTTAAA
51277073 AATAAAATTAACACAA-ATTTTATTTAA
1 AATAAAATTAACACAACATTTT-TTTAA
51277100 GTGAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (28 bp):
AATAAAATTAACACAACATTTTTTTAAA
Found at i:51277446 original size:32 final size:30
Alignment explanation
Indices: 51277391--51277449 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 30
51277381 AATTTTTTAA
*
51277391 ATAATATATTTTAATTTCAATAATTAACGT
1 ATAATATATTTTAATTTAAATAATTAACGT
*
51277421 ATAATGATATTTATTATTTAAATAATTAA
1 ATAAT-ATATTT-TAATTTAAATAATTAA
51277450 ATATAATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 6 0.24
32 14 0.56
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (30 bp):
ATAATATATTTTAATTTAAATAATTAACGT
Found at i:51277455 original size:31 final size:30
Alignment explanation
Indices: 51277391--51277456 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 30
51277381 AATTTTTTAA
* *
51277391 ATAATATATTTTAATTTCAATAATTAACGT
1 ATAATATATTTTAATTTAAATAATTAACAT
*
51277421 ATAATGATATTTATTATTTAAATAATTAA-AT
1 ATAAT-ATATTT-TAATTTAAATAATTAACAT
51277452 ATAAT
1 ATAAT
51277457 TCAAATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 5 0.16
31 12 0.39
32 14 0.45
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (30 bp):
ATAATATATTTTAATTTAAATAATTAACAT
Found at i:51277479 original size:22 final size:22
Alignment explanation
Indices: 51277429--51277486 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
51277419 GTATAATGAT
*
51277429 ATTTATT-ATTTAAATA-ATTA
1 ATTTATTAATTCAAATATATTA
*
51277449 A-ATA-TAATTCAAATATATTA
1 ATTTATTAATTCAAATATATTA
51277469 ATTTATTAATTCAAATAT
1 ATTTATTAATTCAAATAT
51277487 TATAATAGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 1 0.03
19 10 0.32
20 6 0.19
21 2 0.06
22 12 0.39
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATTAATTCAAATATATTA
Found at i:51278363 original size:16 final size:16
Alignment explanation
Indices: 51278342--51278376 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
51278332 CAAATCGTAT
51278342 TTGTTTGAAAAATATA
1 TTGTTTGAAAAATATA
51278358 TTGTTTGAAAAATATA
1 TTGTTTGAAAAATATA
51278374 TTG
1 TTG
51278377 ACTAAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (16 bp):
TTGTTTGAAAAATATA
Found at i:51285827 original size:18 final size:19
Alignment explanation
Indices: 51285796--51285836 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
51285786 AAGTTCTAAT
* *
51285796 AAATAATATTAATTTTTAA
1 AAATAATATAAATTTATAA
51285815 AAAT-ATATAAATTTATAA
1 AAATAATATAAATTTATAA
51285833 AAAT
1 AAAT
51285837 TATCTTACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATAATATAAATTTATAA
Found at i:51286748 original size:23 final size:23
Alignment explanation
Indices: 51286701--51286748 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
51286691 TTGATTAAAT
* *
51286701 TAAAATTATTTTTATTTATTTTA
1 TAAAATAATTTTTATTTATTATA
51286724 TAAAATAATTTTTATTT-TGTATA
1 TAAAATAATTTTTATTTAT-TATA
51286747 TA
1 TA
51286749 TCTAAGAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TAAAATAATTTTTATTTATTATA
Found at i:51290055 original size:40 final size:40
Alignment explanation
Indices: 51289992--51290085 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
51289982 CCATCTCCGA
* *
51289992 CCAACCCAACACACC-A-TGTGGGGATAGAATCAACCCA-
1 CCAACCCTACACACCAAGTATGGGGATAGAATCAACCCAT
* *
51290029 CTCAACCCTACATACCAAGTATGGGGATATAATCAACCCAT
1 C-CAACCCTACACACCAAGTATGGGGATAGAATCAACCCAT
51290070 CCAACCCTACACACCA
1 CCAACCCTACACACCA
51290086 CAAGGTATCG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
37 1 0.02
38 12 0.25
39 1 0.02
40 33 0.69
41 1 0.02
ACGTcount: A:0.37, C:0.36, G:0.12, T:0.15
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAGAATCAACCCAT
Found at i:51290483 original size:17 final size:18
Alignment explanation
Indices: 51290450--51290483 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51290440 TATGCCCTGC
*
51290450 CCGTGTGGGCCCCCACGA
1 CCGTGTGGGCCCACACGA
51290468 CCGTGT-GGCCCACACG
1 CCGTGTGGGCCCACACG
51290484 GCCTAACTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.44, G:0.32, T:0.12
Consensus pattern (18 bp):
CCGTGTGGGCCCACACGA
Found at i:51291748 original size:47 final size:48
Alignment explanation
Indices: 51291632--51291796 Score: 226
Period size: 47 Copynumber: 3.5 Consensus size: 48
51291622 GGGCCTTACA
* * * * *
51291632 ATGTCCTAGATATGGTCTTACACTGGCATACATATCATCACTGATGCC
1 ATGTCCCAGACATGGTTTTACACTGGCACACATATCATCACCGATGCC
*
51291680 ATGTCCCAGACATGGTTTTACACTGGCACATATATCATCACCGATG-C
1 ATGTCCCAGACATGGTTTTACACTGGCACACATATCATCACCGATGCC
* * *
51291727 ATGTCCCAGACACGGTTTTACACTGGCACACAAATCATCGCCGATGCC
1 ATGTCCCAGACATGGTTTTACACTGGCACACATATCATCACCGATGCC
*
51291775 AT-TCCCAGACATGGTCTTACAC
1 ATGTCCCAGACATGGTTTTACAC
51291797 AGAATCTCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 61 0.59
48 43 0.41
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGTCCCAGACATGGTTTTACACTGGCACACATATCATCACCGATGCC
Found at i:51304680 original size:48 final size:48
Alignment explanation
Indices: 51304609--51305024 Score: 372
Period size: 48 Copynumber: 8.7 Consensus size: 48
51304599 GGGTAACTTA
* * * * *
51304609 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
* * *
51304657 CCGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATCTCAATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
* * **
51304705 CCGATGCCATGTCCCAGACATGATCTTACACTAGCGCTCATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
* * * * *
51304753 CTGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
* * **
51304801 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-T-TGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAT-G
* * * * * * *
51304848 CTGACGCCATGTTCCAAATATGGTCTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
* * ** * * *
51304896 CCGATGCCATGTCCCAGAGATGTTCTTACACCGGCTCTTATAACATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
* * * * * **
51304944 TCGATGCCATGTTCCA-AGCGTGGTCTTACATTGGCTCTCATAT-TGTAG
1 CCGATGCCATGTCCCAGA-CATGGTCTTACACTAGCTCTCATATCAAT-G
* * *
51304992 CCGACGCCATGTTCCAAACATGGTCTTACACTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTA
51305025 ACAGACATAT
Statistics
Matches: 297, Mismatches: 65, Indels: 12
0.79 0.17 0.03
Matches are distributed among these distances:
46 1 0.00
47 39 0.13
48 255 0.86
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATG
Found at i:51304970 original size:191 final size:192
Alignment explanation
Indices: 51304609--51305024 Score: 509
Period size: 191 Copynumber: 2.2 Consensus size: 192
51304599 GGGTAACTTA
* * * * *
51304609 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATGTCGAGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCCCATGTCGAGGCCGACGCCATGTCCCAA
* * *
51304674 ATATGGTCTTACACTAGCTCTCATCTCAATACCGATGCCATGTCCCAGACATGATCTTACACTAG
66 ATATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTCCCAGACATGATCTTACACTAG
* * *
51304739 CGCTCATATCAACACTGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTG
131 CGCTCATATCAACACTGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATAACATAG
* * * * *
51304801 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-TTGTGGCTGACGCCATGTTCCAA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCCCATGTCGAGGCCGACGCCATGTCCCAA
* * * *
51304865 ATATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGAGATGTTCTTACAC-CG
66 ATATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTCCCAGACATGATCTTACACTAG
* * * * ***
51304929 -GCTCTTAT-AACATTGTCGATGCCATGTTCCAAG-CGTGGTCTTACATTGGCTCTCATATTGTA
131 CGCTCATATCAACA--CT-GATGCCATG-TCCAAGACATGGTCTTACACTGGCTCTCATAACATA
51304991 G
192 G
*
51304992 CCGACGCCATGTTCCAAACATGGTCTTACACTA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTA
51305025 ACAGACATAT
Statistics
Matches: 192, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
188 4 0.02
189 7 0.04
190 2 0.01
191 137 0.71
192 42 0.22
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (192 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCCCATGTCGAGGCCGACGCCATGTCCCAA
ATATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTCCCAGACATGATCTTACACTAG
CGCTCATATCAACACTGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATAACATAG
Done.