Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 157 of 259
Found at i:51314955 original size:15 final size:15
Alignment explanation
Indices: 51314920--51314971 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
51314910 TTAAGAATTT
*
51314920 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51314934 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51314948 TATTTAATAATAAT-
1 TATTTAATTATAATA
51314962 TATGTTAATT
1 TAT-TTAATT
51314972 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51315005 original size:120 final size:120
Alignment explanation
Indices: 51314858--51315087 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
51314848 TTTGAGAAAA
51314858 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
51314923 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
51314978 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
51315043 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
51315088 TAAATATGAT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (120 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:51315053 original size:61 final size:61
Alignment explanation
Indices: 51314868--51315055 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
51314858 TTATAGTATC
51314868 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
51314929 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
51314988 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
51315049 ATATATT
1 ATATATT
51315056 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:51315070 original size:16 final size:16
Alignment explanation
Indices: 51315049--51315090 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51315039 TTATTAAATT
*
51315049 ATATATTTTAATTATA
1 ATATATTTTAATAATA
51315065 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
51315080 AT-TATGTTTAA
1 ATATAT-TTTAA
51315091 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:51315075 original size:15 final size:15
Alignment explanation
Indices: 51315040--51315081 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51315030 TTAAGAATTT
*
51315040 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51315054 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51315068 TATTTAATAATAAT
1 TATTTAATTATAAT
51315082 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51315316 original size:45 final size:43
Alignment explanation
Indices: 51315216--51315325 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
51315206 TTTTCCATTA
51315216 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
51315255 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
51315300 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
51315326 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:51315327 original size:16 final size:16
Alignment explanation
Indices: 51315306--51315371 Score: 114
Period size: 16 Copynumber: 4.1 Consensus size: 16
51315296 GATTTGCTAT
*
51315306 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
51315322 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
51315338 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51315354 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51315370 TA
1 TA
51315372 TAGCGAACCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.35, C:0.36, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:51316237 original size:144 final size:144
Alignment explanation
Indices: 51315856--51316240 Score: 470
Period size: 144 Copynumber: 2.7 Consensus size: 144
51315846 AAGAGGGTAA
* * * * * * *
51315856 ATTGCCGATGCCATGTCCCAGACATGATCTTACACTGACTCCCATGTCGAGGCCGATGCCAT-TT
1 ATTGCTGATGCCATGTTCCAGACATGATCTTACACTGGCTCTCATATTGTGGCCGATGCCATGTT
* * * * *
51315920 CCCAAACATGGTCTTATACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTAC
66 -CCAAACATGGTCTTATACTAGCACACATATCAATACCGATGCCATGTCCCAGACATGGTCTTAC
* * *
51315985 ACTTGCTGTCATAAT
130 ACTGGCTCTCATAAC
* * * * * *
51316000 A-TGGTCGACGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATTGTGGCCGACGCTATG
1 ATTGCT-GATGCCATGTTCC-AGACATGATCTTACACTGGCTCTCATATTGTGGCCGATGCCATG
* ***
51316063 TTCCAAACATGGTCTTATACAAGTGTACATATCAATACCGATGCCATGTCCCAGACATGGTCTTA
64 TTCCAAACATGGTCTTATACTAGCACACATATCAATACCGATGCCATGTCCCAGACATGGTCTTA
51316128 CACTGGCTCTCATAAC
129 CACTGGCTCTCATAAC
* *
51316144 ATTGCTGATGCCATGTTCCAAACATGTTCTTACACTGGCTCTCATATTGTGGCCGATGCCATGTT
1 ATTGCTGATGCCATGTTCCAGACATGATCTTACACTGGCTCTCATATTGTGGCCGATGCCATGTT
*
51316209 CCAAACATGGTCTTACACTAGCACACATATCA
66 CCAAACATGGTCTTATACTAGCACACATATCA
51316241 CCCAAATGTC
Statistics
Matches: 200, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
143 4 0.02
144 188 0.94
145 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (144 bp):
ATTGCTGATGCCATGTTCCAGACATGATCTTACACTGGCTCTCATATTGTGGCCGATGCCATGTT
CCAAACATGGTCTTATACTAGCACACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACA
CTGGCTCTCATAAC
Found at i:51316238 original size:48 final size:48
Alignment explanation
Indices: 51315859--51316230 Score: 308
Period size: 48 Copynumber: 7.8 Consensus size: 48
51315849 AGGGTAAATT
* * * * * *
51315859 GCCGATGCCATGTCCCAGACATGATCTTACACT-GACTCCCATGTCGA-G
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAG-CTCTCATAT-TATG
* * * *
51315907 GCCGATGCCAT-TTCCCAAACATGGTCTTATACTAGCTCTCGTCTCAAT-
1 GCCGATGCCATGTT-CCAAACATGGTCTTACACTAGCTCTCATAT-TATG
* * * * *
51315955 GCCGATGCCATGTCCCAGACATGGTCTTACACTTGCTGTCATAATATG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATTATG
* * * *
51316003 GTCGACGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATTGTG
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATTATG
* * * * * *
51316051 GCCGACGCTATGTTCCAAACATGGTCTTATACAAG-TGTACATATCAAT-
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-CATAT-TATG
* * * * ** *
51316099 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATTATG
* * * *
51316147 GCTGATGCCATGTTCCAAACATGTTCTTACACTGGCTCTCATATTGTG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATTATG
51316195 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGC
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGC
51316231 ACACATATCA
Statistics
Matches: 258, Mismatches: 55, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
47 9 0.03
48 241 0.93
49 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATTATG
Found at i:51322237 original size:24 final size:25
Alignment explanation
Indices: 51322197--51322253 Score: 98
Period size: 24 Copynumber: 2.3 Consensus size: 25
51322187 TATATTTTAT
*
51322197 ATATCATACCACAACAAAATACAAA
1 ATATTATACCACAACAAAATACAAA
51322222 ATATTATA-CACAACAAAATACAAA
1 ATATTATACCACAACAAAATACAAA
51322246 ATATTATA
1 ATATTATA
51322254 ATGTCAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 24 0.77
25 7 0.23
ACGTcount: A:0.60, C:0.18, G:0.00, T:0.23
Consensus pattern (25 bp):
ATATTATACCACAACAAAATACAAA
Found at i:51323617 original size:21 final size:22
Alignment explanation
Indices: 51323587--51323646 Score: 88
Period size: 21 Copynumber: 2.8 Consensus size: 22
51323577 TTAAAAATAT
51323587 AAATTATATAAATTATTTAAAA
1 AAATTATATAAATTATTTAAAA
*
51323609 AAA-TATATAAATT-TATAAAA
1 AAATTATATAAATTATTTAAAA
*
51323629 AAATTATAAAAATTATTT
1 AAATTATATAAATTATTT
51323647 CACATCCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 9 0.27
21 19 0.58
22 5 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATTATATAAATTATTTAAAA
Found at i:51323640 original size:30 final size:29
Alignment explanation
Indices: 51323579--51323640 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
51323569 TTTTGAAATT
** *
51323579 AAAAATATAAATTATATAAATTATTTAAA
1 AAAAATATAAATTATATAAAAAAATTAAA
*
51323608 AAAATATATAAATT-TATAAAAAAATTATA
1 AAAA-ATATAAATTATATAAAAAAATTAAA
51323637 AAAA
1 AAAA
51323641 TTATTTCACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (29 bp):
AAAAATATAAATTATATAAAAAAATTAAA
Found at i:51324534 original size:7 final size:7
Alignment explanation
Indices: 51324522--51324553 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
51324512 CATGATTTTG
51324522 ATTTAAT
1 ATTTAAT
51324529 ATTTAAT
1 ATTTAAT
51324536 ATTTAAT
1 ATTTAAT
51324543 ATTTAAT
1 ATTTAAT
51324550 ATTT
1 ATTT
51324554 TATAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:51325506 original size:31 final size:30
Alignment explanation
Indices: 51325482--51325543 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
51325472 AATTACCTAC
51325482 AAAAAG-TATGGAAAACATATTAATTACGA
1 AAAAAGATATGGAAAACATATTAATTACGA
** *
51325511 AAGGAGATATGGAAAACATATTAATTATGA
1 AAAAAGATATGGAAAACATATTAATTACGA
51325541 AAA
1 AAA
51325544 TAGACATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.24
Consensus pattern (30 bp):
AAAAAGATATGGAAAACATATTAATTACGA
Found at i:51343179 original size:55 final size:55
Alignment explanation
Indices: 51343087--51343228 Score: 133
Period size: 55 Copynumber: 2.6 Consensus size: 55
51343077 CGACATGACT
* ** * * * * * *
51343087 GTGGTCGAGCCTGCCAAAACAACACTGGCATGCGACACGCCCGTGTGGAAGAACC
1 GTGGTCGAACCTGTTAAAATAACACGGGCGTGCGACACGCACGTGTCGAACAACC
* * *
51343142 GTGG-CTGAACCTGTTAAAATAACACGGGCGTGTGACACGCACGTGTCTAACACCC
1 GTGGTC-GAACCTGTTAAAATAACACGGGCGTGCGACACGCACGTGTCGAACAACC
* * *
51343197 GTGGTCGAACCTGTTAGATTGACACGGGCGTG
1 GTGGTCGAACCTGTTAAAATAACACGGGCGTG
51343229 GGATTTCCCA
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 1 0.01
55 68 0.97
56 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.30, T:0.18
Consensus pattern (55 bp):
GTGGTCGAACCTGTTAAAATAACACGGGCGTGCGACACGCACGTGTCGAACAACC
Found at i:51350759 original size:6 final size:6
Alignment explanation
Indices: 51350748--51350774 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
51350738 GAATCTAAAA
51350748 CTGTAT CTGTAT CTGTAT CTGTAT CTG
1 CTGTAT CTGTAT CTGTAT CTGTAT CTG
51350775 ACTAAGCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.48
Consensus pattern (6 bp):
CTGTAT
Found at i:51355457 original size:4 final size:5
Alignment explanation
Indices: 51355400--51355456 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
51355390 CTCTTTCCCT
*
51355400 TTTTC TTTTC ATTTTC TTTTAC ATTTT- TATTC TTCTTTC TTTTC TTTTC
1 TTTTC TTTTC -TTTTC TTTT-C -TTTTC TTTTC -T-TTTC TTTTC TTTTC
51355449 TTTTC TTT
1 TTTTC TTT
51355457 CACTTGTTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 3 0.07
5 26 0.59
6 8 0.18
7 7 0.16
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:51356071 original size:63 final size:63
Alignment explanation
Indices: 51356000--51356162 Score: 202
Period size: 63 Copynumber: 2.6 Consensus size: 63
51355990 CGTGTGGCAA
* *
51356000 GCCGTGTGACTCACTGTTTGCCATTAAGGACCACATGGGCCAGAGAC-TAGGGTGTGTGTTCAG
1 GCCGTGTGACTCACTGTTTGCAATTAAGGACCACATGGGCCAGAGACAT-GGGTGTGTGTCCAG
* * * * * **
51356063 GCTGTGTGACTTACTGTTTGCTATTAGGGACCATACAGGCCAGAGACATGGGTGTGTGTCCAG
1 GCCGTGTGACTCACTGTTTGCAATTAAGGACCACATGGGCCAGAGACATGGGTGTGTGTCCAG
* * *
51356126 GCCGTGTGACTCACTGTTTACAATTCAGGACAACATG
1 GCCGTGTGACTCACTGTTTGCAATTAAGGACCACATG
51356163 AGCAAATGAC
Statistics
Matches: 81, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
63 80 0.99
64 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (63 bp):
GCCGTGTGACTCACTGTTTGCAATTAAGGACCACATGGGCCAGAGACATGGGTGTGTGTCCAG
Found at i:51371356 original size:47 final size:47
Alignment explanation
Indices: 51371178--51371793 Score: 1029
Period size: 47 Copynumber: 12.9 Consensus size: 47
51371168 TAGTATGGCG
*
51371178 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
51371227 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
51371276 TAATGGCCGATGTGATGAATTTGAAAGTGTATATATGTGATAA-GCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51371322 TAAT-GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
51371370 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
51371419 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51371466 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51371513 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51371560 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
51371607 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
51371656 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
51371703 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
51371750 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51371794 TCCCGAAGGG
Statistics
Matches: 546, Mismatches: 15, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
45 23 0.04
46 7 0.01
47 315 0.58
48 7 0.01
49 194 0.36
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:51371444 original size:143 final size:143
Alignment explanation
Indices: 51371178--51371793 Score: 1064
Period size: 143 Copynumber: 4.3 Consensus size: 143
51371168 TAGTATGGCG
* *
51371178 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
51371243 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51371308 ATATGTGATAA-GCC
129 ATATGTGATAAGGCC
51371322 TAAT-GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
51371386 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51371451 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
51371466 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
51371529 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51371594 ATGTGATAAGGCC
131 ATGTGATAAGGCC
51371607 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
51371672 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
51371737 ATGTGACAGGGCC
131 ATGTGATAAGGCC
* * * * *
51371750 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51371794 TCCCGAAGGG
Statistics
Matches: 458, Mismatches: 10, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
141 104 0.23
142 1 0.00
143 318 0.69
144 11 0.02
145 24 0.05
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCC
Found at i:51373385 original size:120 final size:120
Alignment explanation
Indices: 51373167--51373438 Score: 391
Period size: 120 Copynumber: 2.3 Consensus size: 120
51373157 GAGAATTGAG
* * * *
51373167 AGTGAAATGTCCGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* ** *
51373232 AAGAGCATTCATGCTAGTGATGTATCCGCGCTAAGTCCCAAAGAGCATTCGTGCT
66 AAGAGCATTCATGCTAGTGATATATCCGCGCTAAACCCCAAAGAGCATTCGTGAT
*
51373287 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* * * *
51373352 AAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGAT
66 AAGAGCATTCATGCTAGTGATATATCCGCGCTAAACCCCAAAGAGCATTCGTGAT
* * * *
51373407 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCTCGAAGAGCA
51373439 ATCATGCTGG
Statistics
Matches: 134, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 134 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCATGCTAGTGATATATCCGCGCTAAACCCCAAAGAGCATTCGTGAT
Found at i:51373450 original size:40 final size:40
Alignment explanation
Indices: 51373176--51373438 Score: 337
Period size: 40 Copynumber: 6.6 Consensus size: 40
51373166 GAGTGAAATG
* *
51373176 TCCGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
51373216 TCTGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
51373256 TCCGCGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
51373296 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
51373336 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * * *
51373376 TCCGTGCTAAACCCCGAAGAGCATTTGTGATGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
51373416 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
51373439 ATCATGCTGG
Statistics
Matches: 191, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 191 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:51377183 original size:49 final size:49
Alignment explanation
Indices: 51377126--51377788 Score: 1143
Period size: 49 Copynumber: 13.8 Consensus size: 49
51377116 CGTAATGACT
*
51377126 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377175 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377224 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377273 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* *
51377322 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAAGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377369 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377418 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377467 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
*
51377514 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377563 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377610 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
51377659 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* * * *
51377706 GATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* * *
51377753 AACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51377789 TCCCGAAGGG
Statistics
Matches: 590, Mismatches: 16, Indels: 18
0.95 0.03 0.03
Matches are distributed among these distances:
47 233 0.39
48 1 0.00
49 356 0.60
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:51377374 original size:96 final size:97
Alignment explanation
Indices: 51377126--51377788 Score: 1112
Period size: 96 Copynumber: 6.9 Consensus size: 97
51377116 CGTAATGACT
*
51377126 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377191 AAGTGTATATATATGTGATAAGGCCTAATGGCC
65 AAGTGTATATATATGTGATAAGGCCTAATGGCC
51377224 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377289 AAGTGTATATATATGTGATAAGGCCTAATGGCC
65 AAGTGTATATATATGTGATAAGGCCTAATGGCC
* *
51377322 GATGTGATGAATGTGAAAGTG-TATATATGTGATAAAGCCTAATAGCCGATGTGATGAATGTGAA
1 GATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51377386 AGTGTATATATATGTGATAAGGCCTAATGGCC
66 AGTGTATATATATGTGATAAGGCCTAATGGCC
51377418 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377483 AAGTG--TATATATGTGATAAGGCCTAATGGCC
65 AAGTGTATATATATGTGATAAGGCCTAATGGCC
*
51377514 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377579 AAGTG--TATATATGTGATAAGGCCTAATGGCC
65 AAGTGTATATATATGTGATAAGGCCTAATGGCC
51377610 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377675 AAGTG--TATATATGTGATAAGGCCTAATGGCC
65 AAGTGTATATATATGTGATAAGGCCTAATGGCC
* * * * * * *
51377706 GATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 GATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51377770 AGTGTATA-A-ATGTGATAAG
66 AGTGTATATATATGTGATAAG
51377789 TCCCGAAGGG
Statistics
Matches: 547, Mismatches: 14, Indels: 12
0.95 0.02 0.02
Matches are distributed among these distances:
94 50 0.09
95 1 0.00
96 333 0.61
98 163 0.30
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
GATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:51377412 original size:145 final size:145
Alignment explanation
Indices: 51377126--51377788 Score: 1140
Period size: 145 Copynumber: 4.6 Consensus size: 145
51377116 CGTAATGACT
*
51377126 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377191 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
66 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
51377256 GATAAGGCCTAATGGCC
129 GATAAGGCCTAATGGCC
51377273 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
51377338 AAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51377403 TAAGGCCTAATGGCC
131 TAAGGCCTAATGGCC
51377418 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377483 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
51377548 TAAGGCCTAATGGTC
131 TAAGGCCTAATGGCC
51377563 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51377626 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
66 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
51377689 GATAAGGCCTAATGGCC
129 GATAAGGCCTAATGGCC
* * * * * * *
51377706 GATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
51377769 AAGTGTATAAATGTGATAAG
66 AAGTGTATATATGTGATAAG
51377789 TCCCGAAGGG
Statistics
Matches: 499, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
141 14 0.03
143 133 0.27
145 283 0.57
147 69 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
TAAGGCCTAATGGCC
Found at i:51379032 original size:13 final size:13
Alignment explanation
Indices: 51379016--51379048 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51379006 TTTGATTAAA
*
51379016 TTAGTTAATTAGT
1 TTAGATAATTAGT
51379029 TTAGATAATTAGT
1 TTAGATAATTAGT
51379042 TTA-ATAA
1 TTAGATAA
51379049 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:51379339 original size:5 final size:5
Alignment explanation
Indices: 51379329--51379353 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51379319 TTTTTCTTGA
51379329 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
51379354 TACTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:51382108 original size:37 final size:36
Alignment explanation
Indices: 51382036--51382113 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
51382026 TTATTACGAA
* * * *
51382036 GTCTTACCTGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCGGACAAAATCCCCACACGAAGTCATCGG
*
51382072 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTA-CCGGACAAAATCCCCACACGAAGTCATCGG
51382109 GTCTT
1 GTCTT
51382114 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 6 0.17
37 30 0.83
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (36 bp):
GTCTTACCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51382310 original size:47 final size:47
Alignment explanation
Indices: 51382232--51382769 Score: 914
Period size: 47 Copynumber: 11.3 Consensus size: 47
51382222 CCCTTCGGGA
* * * * * *
51382232 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51382279 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51382326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51382373 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
51382422 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
51382471 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51382518 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
51382567 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51382614 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
51382663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51382710 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51382757 CTTATCACATATA
1 CTTATCACATATA
51382770 CTTTCACGTA
Statistics
Matches: 472, Mismatches: 13, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
47 283 0.60
49 189 0.40
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51382429 original size:96 final size:95
Alignment explanation
Indices: 51382232--51382769 Score: 920
Period size: 96 Copynumber: 5.6 Consensus size: 95
51382222 CCCTTCGGGA
* * * * * * * *
51382232 CTTATCACATTTAT-ACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
51382296 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
51382326 CTTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--A
51382390 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
51382422 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51382487 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
51382518 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51382583 ACTTTCACATTCATCACATCTGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
51382614 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51382679 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
51382710 CTTATCACATATAT-ACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
51382770 CTTTCACGTA
Statistics
Matches: 429, Mismatches: 11, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
94 98 0.23
96 284 0.66
98 47 0.11
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (95 bp):
CTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51388339 original size:14 final size:15
Alignment explanation
Indices: 51388320--51388349 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51388310 TGAATCCTCC
51388320 TATTTTATT-TTATT
1 TATTTTATTCTTATT
51388334 TATTTTATTCTTATT
1 TATTTTATTCTTATT
51388349 T
1 T
51388350 TTCTTTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTTTATTCTTATT
Found at i:51391298 original size:13 final size:13
Alignment explanation
Indices: 51391277--51391315 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
51391267 CTTTGCTTTT
* *
51391277 ATTAATTTAGTTA
1 ATTAGTTTAGATA
51391290 ATTAGTTTAGATA
1 ATTAGTTTAGATA
51391303 ATTAGTTTA-ATA
1 ATTAGTTTAGATA
51391315 A
1 A
51391316 ACAAACTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (13 bp):
ATTAGTTTAGATA
Found at i:51395738 original size:21 final size:22
Alignment explanation
Indices: 51395693--51395743 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
51395683 AATTTTTTTA
51395693 AAATATCAAATATTAAAATATT
1 AAATATCAAATATTAAAATATT
51395715 AAA-ATCAAATATTAAAA-ATGT
1 AAATATCAAATATTAAAATAT-T
51395736 AAATATCA
1 AAATATCA
51395744 TTAAACATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 2 0.07
21 18 0.67
22 7 0.26
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATATCAAATATTAAAATATT
Found at i:51395873 original size:16 final size:17
Alignment explanation
Indices: 51395837--51395873 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
51395827 AATTTCACTT
*
51395837 TAATAATAAATTTTAAA
1 TAATAATAAATTGTAAA
51395854 -AATAAT-AATTGTAAA
1 TAATAATAAATTGTAAA
51395869 TAATA
1 TAATA
51395874 TTCTTCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTGTAAA
Found at i:51400072 original size:28 final size:28
Alignment explanation
Indices: 51400040--51400096 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
51400030 CATAAACGAA
51400040 AGTAAAACAATTTAAAGTATGTGTAGCC
1 AGTAAAACAATTTAAAGTATGTGTAGCC
51400068 AGTAAAACAATTTAAAGTATGTGTAGCC
1 AGTAAAACAATTTAAAGTATGTGTAGCC
51400096 A
1 A
51400097 CCGTTGAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.28
Consensus pattern (28 bp):
AGTAAAACAATTTAAAGTATGTGTAGCC
Found at i:51404896 original size:34 final size:34
Alignment explanation
Indices: 51404842--51404925 Score: 114
Period size: 34 Copynumber: 2.5 Consensus size: 34
51404832 ACTATTATTA
* * * *
51404842 AAATAGGCTCGGGCCCAGACTGCTACTGTTACTG
1 AAATGGGCTCAGGCCCAGACTGCAACTGTTAATG
*
51404876 AAATGGGCTCAGGCCTAGACTGCAACTGTTAATG
1 AAATGGGCTCAGGCCCAGACTGCAACTGTTAATG
*
51404910 AAATGGGCTAAGGCCC
1 AAATGGGCTCAGGCCC
51404926 TAATTGAGAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (34 bp):
AAATGGGCTCAGGCCCAGACTGCAACTGTTAATG
Found at i:51413960 original size:79 final size:81
Alignment explanation
Indices: 51413820--51414004 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
51413810 TTGAATGATG
* * *
51413820 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATTCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
51413884 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51413899 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51413961 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
51413979 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51414005 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:51414018 original size:40 final size:40
Alignment explanation
Indices: 51413821--51414004 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
51413811 TGAATGATGT
* * * *
51413821 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
51413861 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
51413901 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
51413939 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51413980 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51414005 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51414026 original size:79 final size:79
Alignment explanation
Indices: 51413873--51414037 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
51413863 GGACTAAGAT
* * **
51413873 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
51413938 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51413952 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
51414015 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51414031 CCGAAGG
1 CCGAAGG
51414038 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51415445 original size:14 final size:15
Alignment explanation
Indices: 51415409--51415449 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
51415399 GATTAGTCCC
51415409 AAATCATAATAAACT
1 AAATCATAATAAACT
**
51415424 TGAT-ATAATAAA-T
1 AAATCATAATAAACT
51415437 AAATCATAATAAA
1 AAATCATAATAAA
51415450 ATATACCAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 3 0.14
14 16 0.76
15 2 0.10
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.29
Consensus pattern (15 bp):
AAATCATAATAAACT
Found at i:51417197 original size:18 final size:18
Alignment explanation
Indices: 51417154--51417198 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
51417144 GATATTAATT
*
51417154 ATTATAAAATAATATTTT
1 ATTATAAAATAATATTTG
51417172 ATTATAAAATTAAT-TTTG
1 ATTATAAAA-TAATATTTG
*
51417190 ATTGTAAAA
1 ATTATAAAA
51417199 AAAAAATTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (18 bp):
ATTATAAAATAATATTTG
Found at i:51423901 original size:104 final size:105
Alignment explanation
Indices: 51423687--51423872 Score: 288
Period size: 104 Copynumber: 1.8 Consensus size: 105
51423677 TGATTAAAAT
* * * *
51423687 TAATCACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAAATTTAACATT
*
51423752 AAACCTTATTAAAATAATAAAATGTTTATAAACATTAAGA
66 AAACCTTATTAAAATAATAAAATGTTTAAAAACATTAAGA
* *
51423792 TAATCACTTTAATATTAAATTAATAAAATA-CTATTAAGATAAGTATTAAATTAAATTTAACATT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAAATTTAACATT
51423856 AAA-C-TATTAAAATAATA
66 AAACCTTATTAAAATAATA
51423873 TTATTTTTGA
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
102 13 0.17
103 1 0.01
104 32 0.43
105 29 0.39
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (105 bp):
TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAAATTTAACATT
AAACCTTATTAAAATAATAAAATGTTTAAAAACATTAAGA
Found at i:51428030 original size:35 final size:41
Alignment explanation
Indices: 51427990--51428082 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 41
51427980 AAAAATTATA
* *
51427990 AAAAAAAATTAAA-ATGAT-AATAAAGA-AAAA-TG-AAAT
1 AAAAAGAATTAAATAAGATAAATAAAGATAAAAGTGAAAAT
*
51428026 AAAAAGTACTTAAATAAGATAAATAAAGATAAAAGTGAAAAT
1 AAAAAG-AATTAAATAAGATAAATAAAGATAAAAGTGAAAAT
*
51428068 AAAAATAA-TAAATAA
1 AAAAAGAATTAAATAA
51428083 AAAGTTTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
36 5 0.11
37 6 0.13
38 4 0.09
39 8 0.17
40 11 0.24
41 3 0.07
42 9 0.20
ACGTcount: A:0.70, C:0.01, G:0.09, T:0.20
Consensus pattern (41 bp):
AAAAAGAATTAAATAAGATAAATAAAGATAAAAGTGAAAAT
Found at i:51439495 original size:50 final size:50
Alignment explanation
Indices: 51439420--51439552 Score: 198
Period size: 50 Copynumber: 2.7 Consensus size: 50
51439410 AGCTATTGTG
**
51439420 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGG-TGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATAATT
*
51439470 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATT
* *
51439520 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
51439553 TGCGTACCAG
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
49 34 0.44
50 43 0.56
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATT
Found at i:51443123 original size:50 final size:50
Alignment explanation
Indices: 51443048--51443187 Score: 194
Period size: 50 Copynumber: 2.8 Consensus size: 50
51443038 AGCTATTGTG
**
51443048 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGG-TGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATAATT
* *
51443098 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATT
* * *
51443148 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
51443188 TAGATAGCTT
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
49 39 0.48
50 42 0.52
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATT
Found at i:51446646 original size:47 final size:47
Alignment explanation
Indices: 51446592--51446785 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
51446582 TTAGGATTTT
** * **
51446592 ATGTGATGAATGTGAATGTGTATATATAAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51446639 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
51446686 ATGTGATGAATGTGAGCATGCATATGTGTGATTAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
51446733 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51446780 ATGTGA
1 ATGTGA
51446786 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51446692 original size:22 final size:22
Alignment explanation
Indices: 51446621--51446692 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
51446611 GTATATATAA
51446621 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
51446643 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
51446668 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
51446690 GAT
1 GAT
51446693 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:51446818 original size:48 final size:48
Alignment explanation
Indices: 51446755--51446987 Score: 387
Period size: 48 Copynumber: 4.8 Consensus size: 48
51446745 TGAACATGCA
51446755 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
51446803 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
51446851 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
51446899 CATATGTGTTAAAGCAGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
51446949 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
51446988 GGCGATGTGC
Statistics
Matches: 172, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.01
48 127 0.74
49 4 0.02
50 39 0.23
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:51447036 original size:146 final size:143
Alignment explanation
Indices: 51446756--51447027 Score: 363
Period size: 146 Copynumber: 1.9 Consensus size: 143
51446746 GAACATGCAT
* *
51446756 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
* * * *
51446821 ATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
66 ATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGT-AAGCCGAACGACCAATGTGAAATA
51446886 TGTATGAGATATGC
130 TGTATGAGATATGC
*
51446900 ATATGTGTTAAAGCAGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCAGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* * * *
51446964 CGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATAT-T-GT-GGCCGAACGACCAATGTGA
63 CGAATGGCTAATGTGAAATATGTAGGAGATAT--GTATATGTGGTAAGCCGAACGACCAATGTGA
51447026 AA
126 AA
51447028 GGTGTGTATT
Statistics
Matches: 112, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
143 1 0.01
144 42 0.38
145 2 0.02
146 60 0.54
147 1 0.01
148 6 0.05
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (143 bp):
ATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAGCCGAACGACCAATGTGAAATAT
GTATGAGATATGC
Found at i:51447241 original size:37 final size:37
Alignment explanation
Indices: 51447133--51447241 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
51447123 GGAAATATAT
* *
51447133 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
51447170 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
51447207 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
51447242 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:51449082 original size:40 final size:40
Alignment explanation
Indices: 51448999--51449301 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
51448989 TTGAATGCTG
* * * * * *
51448999 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
51449039 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
51449079 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
51449119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
51449159 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
51449199 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51449239 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51449278 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51449302 TGAACGAGGA
Statistics
Matches: 239, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
39 35 0.15
40 196 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:51456369 original size:40 final size:40
Alignment explanation
Indices: 51456286--51456588 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
51456276 TTGAATGCTG
* * * * * *
51456286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
51456326 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
51456366 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
51456406 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
51456446 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
51456486 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51456526 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51456565 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51456589 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:51458262 original size:16 final size:16
Alignment explanation
Indices: 51458241--51458280 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
51458231 CTTATCAACA
51458241 GAGTACCAGCACAGAG
1 GAGTACCAGCACAGAG
51458257 GAGTACCAGCACAGAG
1 GAGTACCAGCACAGAG
*
51458273 GCGTACCA
1 GAGTACCA
51458281 ACAAACTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.30, T:0.07
Consensus pattern (16 bp):
GAGTACCAGCACAGAG
Found at i:51458781 original size:62 final size:62
Alignment explanation
Indices: 51458684--51458816 Score: 194
Period size: 62 Copynumber: 2.1 Consensus size: 62
51458674 TAGGCACACA
* * * *
51458684 CCCATGTCCCTGGTCTTGTGGTTCTAAAGTGTAAATAATAAGTTGCACGACCTGGACACATG
1 CCCATGTCCCTAGCCGTGTGGTTCTAAAGTGTAAATAATAAGTTACACGACCTGGACACATG
* * * *
51458746 CCCATGTCCCTAGCCGTGTGGTTCTAAAGTGTAAATAGTGAGTTACATGGCCTGGACACATG
1 CCCATGTCCCTAGCCGTGTGGTTCTAAAGTGTAAATAATAAGTTACACGACCTGGACACATG
51458808 CCCATGTCC
1 CCCATGTCC
51458817 TTGCCCGTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (62 bp):
CCCATGTCCCTAGCCGTGTGGTTCTAAAGTGTAAATAATAAGTTACACGACCTGGACACATG
Found at i:51466812 original size:24 final size:24
Alignment explanation
Indices: 51466751--51466816 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
51466741 TGATGGATTT
*
51466751 TAGCCATTTGATTTGGCTTGTAAA
1 TAGCCATGTGATTTGGCTTGTAAA
* *
51466775 T-G--ATGTGTAATTTGGGTTGTGAA
1 TAGCCATGTG--ATTTGGCTTGTAAA
51466798 TAGCCATGTGATTTGGCTT
1 TAGCCATGTGATTTGGCTT
51466817 ATCTTGGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
21 4 0.12
23 14 0.42
24 10 0.30
26 5 0.15
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (24 bp):
TAGCCATGTGATTTGGCTTGTAAA
Found at i:51467964 original size:12 final size:13
Alignment explanation
Indices: 51467934--51467974 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
51467924 AATTAGCCAG
51467934 AAAAAA-TTATAT
1 AAAAAATTTATAT
*
51467946 AATAAATTTATA-
1 AAAAAATTTATAT
*
51467958 AAAAAATTGATAT
1 AAAAAATTTATAT
51467971 AAAA
1 AAAA
51467975 TGTTAATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (13 bp):
AAAAAATTTATAT
Found at i:51468088 original size:126 final size:128
Alignment explanation
Indices: 51467858--51468115 Score: 450
Period size: 126 Copynumber: 2.0 Consensus size: 128
51467848 AGAAACAACT
* *
51467858 TTTTTCGCTAAATAAAAAAAAACAGCCTAATTGACAAACTAAAAAAACAAACATCATATATAGCT
1 TTTTTCGCTAAATAAAAAAAAACAACCTAATTGACAAACTAAAAAAACAAACAGCATATATAGCT
* *
51467923 AAATTAGCCAGAAAAAATTATATAATAAATTTATAAAAAAATTGATATAAAATGTTAATATGA
66 AAATTAGCCAGAAAAAATTATATAATAAATTTATAAAAAAATCGATATAAAATGTTAATAAGA
51467986 TTTTT-GCTAAAT-AAAAAAAACAACCTAATTGACAAACTAAAAAAACAAACAGCATATATAGCT
1 TTTTTCGCTAAATAAAAAAAAACAACCTAATTGACAAACTAAAAAAACAAACAGCATATATAGCT
51468049 AAATTAGCCAGAAAAAAATTATATAATAAATTTAT-AAAAAATCGATATAAAATGTTAATAAGA
66 AAATTAGCCAG-AAAAAATTATATAATAAATTTATAAAAAAATCGATATAAAATGTTAATAAGA
51468112 TTTT
1 TTTT
51468116 GATTGCAATG
Statistics
Matches: 125, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
126 90 0.72
127 30 0.24
128 5 0.04
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (128 bp):
TTTTTCGCTAAATAAAAAAAAACAACCTAATTGACAAACTAAAAAAACAAACAGCATATATAGCT
AAATTAGCCAGAAAAAATTATATAATAAATTTATAAAAAAATCGATATAAAATGTTAATAAGA
Found at i:51472085 original size:38 final size:38
Alignment explanation
Indices: 51472043--51472115 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
51472033 GTTAACACTG
*
51472043 CGACTGTTAAACT-AAAAGCATGTGAAGCATGTCTACTA
1 CGACTATTAAACTGAAAA-CATGTGAAGCATGTCTACTA
* * *
51472081 CGACTATTGAACTGAATACATGTTAAGCATGTCTA
1 CGACTATTAAACTGAAAACATGTGAAGCATGTCTA
51472116 TTGTTACTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
38 27 0.90
39 3 0.10
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (38 bp):
CGACTATTAAACTGAAAACATGTGAAGCATGTCTACTA
Found at i:51472314 original size:22 final size:22
Alignment explanation
Indices: 51472248--51472314 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
51472238 AATAATTTGT
*
51472248 AAACACTAGTGGTTCAT-C-CA
1 AAACACTGGTGGTTCATCCACA
* *
51472268 AAACTTACTGG-GGATTTATCTACA
1 AAAC--ACTGGTGG-TTCATCCACA
51472292 AAACACTGGTGGTTCATCCACA
1 AAACACTGGTGGTTCATCCACA
51472314 A
1 A
51472315 CCTACTAGCA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
20 4 0.11
21 2 0.06
22 22 0.61
23 2 0.06
24 6 0.17
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (22 bp):
AAACACTGGTGGTTCATCCACA
Found at i:51474018 original size:91 final size:91
Alignment explanation
Indices: 51473852--51474024 Score: 224
Period size: 91 Copynumber: 1.9 Consensus size: 91
51473842 TTTGTAGATA
* * *
51473852 AACCACCAAAAGGTGTAGGTTAATATGCTGCTAGATAGTTGTGAATACATAACATAATTACATAT
1 AACCACCAAAAGGTGTAGGTTAATACGCTGCTAGATAGTTATGAATACATAACATAATTACAGAT
51473917 AAAAGATGCCAGATAATGGGTGGGCG
66 AAAAGATGCCAGATAATGGGTGGGCG
* * * **
51473943 AACCACC-AAAGGTTGTAGTTTAATACGCT-ATCAGATGGTTATGAATACATAACATTTTTACAG
1 AACCACCAAAAGG-TGTAGGTTAATACGCTGCT-AGATAGTTATGAATACATAACATAATTACAG
* *
51474006 ATAGAAGTTGCCAGATAAT
64 ATAAAAGATGCCAGATAAT
51474025 ATGTGGATGA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 6 0.09
91 64 0.91
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (91 bp):
AACCACCAAAAGGTGTAGGTTAATACGCTGCTAGATAGTTATGAATACATAACATAATTACAGAT
AAAAGATGCCAGATAATGGGTGGGCG
Found at i:51483086 original size:28 final size:28
Alignment explanation
Indices: 51483053--51483111 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
51483043 TTAAAATCCC
51483053 TTTGTGGTTTGATAAAAACTTTAGTATG
1 TTTGTGGTTTGATAAAAACTTTAGTATG
51483081 TTTGTGGTTTGATAAAAACTTTAGTATG
1 TTTGTGGTTTGATAAAAACTTTAGTATG
51483109 TTT
1 TTT
51483112 ATAGTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.49
Consensus pattern (28 bp):
TTTGTGGTTTGATAAAAACTTTAGTATG
Found at i:51483121 original size:24 final size:26
Alignment explanation
Indices: 51483064--51483118 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 26
51483054 TTGTGGTTTG
* *
51483064 ATAAAAACTTTAGTATGTTTGTGGTTT
1 ATAAAAACTTTAGTATGTTTATAG-TT
51483091 GATAAAAACTTTAGTATGTTTATAGTT
1 -ATAAAAACTTTAGTATGTTTATAGTT
51483118 A
1 A
51483119 AAATCCTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 2 0.08
28 22 0.88
ACGTcount: A:0.35, C:0.04, G:0.16, T:0.45
Consensus pattern (26 bp):
ATAAAAACTTTAGTATGTTTATAGTT
Found at i:51485408 original size:24 final size:24
Alignment explanation
Indices: 51485381--51485436 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
51485371 TCCTAAAATC
*
51485381 TCTCCATAATCCTCTCCTTGATTT
1 TCTCCACAATCCTCTCCTTGATTT
* * *
51485405 TCTCCCCAATCTTCTCCTTGATTC
1 TCTCCACAATCCTCTCCTTGATTT
*
51485429 CCTCCACA
1 TCTCCACA
51485437 TAACACTCTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.41, G:0.04, T:0.39
Consensus pattern (24 bp):
TCTCCACAATCCTCTCCTTGATTT
Found at i:51491779 original size:27 final size:27
Alignment explanation
Indices: 51491727--51491779 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
51491717 ATCATAACAC
* *
51491727 AAATCAGTCATTTACCCTCGAGGGGTA
1 AAATCAGTCATTTACCCTAGAAGGGTA
*
51491754 AAAT-AGTCATTTTACCCTATAAGGGT
1 AAATCAGTCA-TTTACCCTAGAAGGGT
51491780 GTTTTGGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (27 bp):
AAATCAGTCATTTACCCTAGAAGGGTA
Found at i:51497128 original size:268 final size:251
Alignment explanation
Indices: 51496729--51497500 Score: 1145
Period size: 268 Copynumber: 3.0 Consensus size: 251
51496719 CCAAATGGTG
* * * *
51496729 CAACGGGCACAGTGATGTTCCA-AGAATGTACGAGTTCAATATGAACCAGTATAGGTATGTATGT
1 CAACGGGCACAGTAATGTT--AGAGAATGTACGAGTTCGATATGAACCAGTACAGGTATGTATAT
51496793 ATGTAAATCATGTA-AAATTTGGATCTATGAATTTGTGATTCCATAATTAACTTTGTTGGTGATT
64 ATGTAAA-CATGTAGAAA-TTGGATCTATGAATTTGTGATTCCATAATTAACTTTGTTGGTGATT
* * * * *
51496857 ACATGTTATGTTAATGAGACTAAGTTGAGTTGCATTATAATTTAAATTGCTCGCTTAATTATGGT
127 ACATGTTAGGTTAATGAGACTAAATTGAGTTGCATTATAATTTAAATTACTTGCTTAATTGTGGT
* * * *
51496922 TTATTGGTAAGTTATATTTGCAATTATACAAACTTACTAAGCCTAATTGCTTACTGTGTT
192 TGATTGGTAAGTTATATTTGCAGTTATACGAACTTACTAAGCCTAATTGCTTACTTTGTT
*
51496982 CAACGGGCACAGTGATGTTACGAGAATGTACGAGTTCGATAT-AGACCAGTACAAGTATGTATGT
1 CAACGGGCACAGTAATGTTA-GAGAATGTACGAGTTCGATATGA-ACCAGTAC-AG---GTATGT
*
51497046 ATGTATGTAAATCATGTAGAAATTGGATCTATGAAATTTCTATGAATTTGTGATTCCATAATTAA
60 ATATATGTAAA-CATGTAGAAATT-G------G--A--TCTATGAATTTGTGATTCCATAATTAA
*
51497111 CTTTGTTGGAGATTACATGTTAGGTTAATGAGACTAAATTGAGTTGCATTATAATTTAAATTACT
113 CTTTGTTGGTGATTACATGTTAGGTTAATGAGACTAAATTGAGTTGCATTATAATTTAAATTACT
*
51497176 TGCTTAATTGTGGTTGATTGGTCAGTTATATTTGCAGTTATACGAACTTACTAAGCCTAATTGCT
178 TGCTTAATTGTGGTTGATTGGTAAGTTATATTTGCAGTTATACGAACTTACTAAGCCTAATTGCT
51497241 TACTTTGTT
243 TACTTTGTT
51497250 CAACGGGCACAGTAATGTTAGAGAATGTACGAGTTCGATATGAACCAGTACAGGTATGTATATAT
1 CAACGGGCACAGTAATGTTAGAGAATGTACGAGTTCGATATGAACCAGTACAGGTATGTATATAT
*
51497315 GTAAACATGTAGAAATTGGATCTATGAATTTGTGATTTCATAATTAACTTTGTTGGTGATTACAT
66 GTAAACATGTAGAAATTGGATCTATGAATTTGTGATTCCATAATTAACTTTGTTGGTGATTACAT
*
51497380 GTTAGGTTAATGAGACTAAATTGAGTTGCATTATAATTTAAAATACTTGCTTAATTGTGGTTGAT
131 GTTAGGTTAATGAGACTAAATTGAGTTGCATTATAATTTAAATTACTTGCTTAATTGTGGTTGAT
*
51497445 TGGTAATTTATATTTGCAGTTATACGAACTTACTAAGCCTAATTGCTTACTTTGTT
196 TGGTAAGTTATATTTGCAGTTATACGAACTTACTAAGCCTAATTGCTTACTTTGTT
51497501 TACTTTTCCA
Statistics
Matches: 479, Mismatches: 20, Indels: 42
0.89 0.04 0.08
Matches are distributed among these distances:
251 162 0.34
252 1 0.00
253 46 0.10
254 2 0.00
255 1 0.00
257 26 0.05
258 4 0.01
261 1 0.00
262 12 0.03
263 16 0.03
264 1 0.00
266 3 0.01
267 29 0.06
268 175 0.37
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.38
Consensus pattern (251 bp):
CAACGGGCACAGTAATGTTAGAGAATGTACGAGTTCGATATGAACCAGTACAGGTATGTATATAT
GTAAACATGTAGAAATTGGATCTATGAATTTGTGATTCCATAATTAACTTTGTTGGTGATTACAT
GTTAGGTTAATGAGACTAAATTGAGTTGCATTATAATTTAAATTACTTGCTTAATTGTGGTTGAT
TGGTAAGTTATATTTGCAGTTATACGAACTTACTAAGCCTAATTGCTTACTTTGTT
Found at i:51501046 original size:23 final size:23
Alignment explanation
Indices: 51501020--51501064 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51501010 CACTTAGTTC
* *
51501020 AGTCTAATACAAAGGTGTTCGAT
1 AGTCCAATACAAAGGTGCTCGAT
*
51501043 AGTCCAATACGAAGGTGCTCGA
1 AGTCCAATACAAAGGTGCTCGA
51501065 CATTTCCGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (23 bp):
AGTCCAATACAAAGGTGCTCGAT
Found at i:51515601 original size:38 final size:38
Alignment explanation
Indices: 51515559--51515644 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 38
51515549 AAGCATATGG
* * * * *
51515559 AGCATGTCTATTGCAACTGTTGAACTAAATATATGTTA
1 AGCATATCTATTACAACTGTTAAACTAAATACATGTCA
**
51515597 AGCATATCTATTATTACTGTTAAACTAAATACATGTCA
1 AGCATATCTATTACAACTGTTAAACTAAATACATGTCA
51515635 AGCATATCTA
1 AGCATATCTA
51515645 CTGTTTTTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (38 bp):
AGCATATCTATTACAACTGTTAAACTAAATACATGTCA
Found at i:51517615 original size:30 final size:30
Alignment explanation
Indices: 51517573--51517635 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
51517563 ATAAAATATG
51517573 AAAAATATGGGCAAAACCATAAAAAT-TAAA
1 AAAAATATGGGCAAAACCAT-AAAATCTAAA
*
51517603 AAAAATGA-GGGCAAAACTATAAAATCTAAA
1 AAAAAT-ATGGGCAAAACCATAAAATCTAAA
51517633 AAA
1 AAA
51517636 CAGGGACAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 5 0.17
30 24 0.80
31 1 0.03
ACGTcount: A:0.63, C:0.10, G:0.11, T:0.16
Consensus pattern (30 bp):
AAAAATATGGGCAAAACCATAAAATCTAAA
Found at i:51517726 original size:28 final size:28
Alignment explanation
Indices: 51517551--51517911 Score: 77
Period size: 28 Copynumber: 13.0 Consensus size: 28
51517541 TTTGTAAAGC
* *
51517551 AGGGGAAAAACTATAAAAT-ATGAAAAAT
1 AGGGGCAAAACTATAAAATCA-AAAAAAT
* * *
51517579 ATGGGCAAAACCATAAAAATTAAAAAAA-
1 AGGGGCAAAACTAT-AAAATCAAAAAAAT
* *
51517607 ATGAGGGCAAAACTATAAAATCTAAAAAAC
1 A-G-GGGCAAAACTATAAAATCAAAAAAAT
* * * * *
51517637 A-GGG-ACAATTGTCAAATCTAAAAAAT
1 AGGGGCAAAACTATAAAATCAAAAAAAT
* * **
51517663 AGAAGG-AAAA-TGA-AAATTTTGAAAAAAT
1 AG-GGGCAAAACT-ATAAA-ATCAAAAAAAT
***
51517691 AATAGCAAAACTATAAAATCAAAAAAAT
1 AGGGGCAAAACTATAAAATCAAAAAAAT
* * * *
51517719 AGGGGCAAAATTCTAAAATTTGAAAATAA-
1 AGGGGCAAAACTATAAAA--TCAAAAAAAT
* * *
51517748 A-GGGTAAAACTGTAAAATC-TAAAAA-
1 AGGGGCAAAACTATAAAATCAAAAAAAT
* * * * **
51517773 A---GAAAAATTGTCAAATCTGAAAAAT
1 AGGGGCAAAACTATAAAATCAAAAAAAT
** * ***
51517798 AGACGCAAAATTATAAAAT-TTGAAAAT
1 AGGGGCAAAACTATAAAATCAAAAAAAT
*
51517825 AGGGGTAAAACTATAAAATCAAAAAAAAT
1 AGGGGCAAAACTATAAAATC-AAAAAAAT
* * * * * *
51517854 ATGGGAAAAATTGTAAAATTTAGAAAAAT
1 AGGGGCAAAACTATAAAA-TCAAAAAAAT
* * * *
51517883 AGGGGTAAAATTATAAAATCTAAGAAAT
1 AGGGGCAAAACTATAAAATCAAAAAAAT
51517911 A
1 A
51517912 AGGGACACAT
Statistics
Matches: 243, Mismatches: 68, Indels: 44
0.68 0.19 0.12
Matches are distributed among these distances:
23 13 0.05
24 5 0.02
25 6 0.02
26 19 0.08
27 28 0.12
28 84 0.35
29 67 0.28
30 21 0.09
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (28 bp):
AGGGGCAAAACTATAAAATCAAAAAAAT
Found at i:51517744 original size:29 final size:29
Alignment explanation
Indices: 51517697--51517911 Score: 116
Period size: 29 Copynumber: 7.8 Consensus size: 29
51517687 AAATAATAGC
* * *
51517697 AAAACTATAAAATC-AAAAAAATAGGGGC
1 AAAATTATAAAATCTGAAAAAATAGGGGT
* *
51517725 AAAATTCTAAAATTTGAAAATAA-A-GGGT
1 AAAATTATAAAATCTGAAAA-AATAGGGGT
* * *
51517753 AAAACTGTAAAATCT--AAAAA-A---GA
1 AAAATTATAAAATCTGAAAAAATAGGGGT
* * ** *
51517776 AAAATTGTCAAATCTG-AAAAATAGACGC
1 AAAATTATAAAATCTGAAAAAATAGGGGT
*
51517804 AAAATTATAAAATTTG--AAAATAGGGGT
1 AAAATTATAAAATCTGAAAAAATAGGGGT
* ** * *
51517831 AAAACTATAAAATCAAAAAAAATATGGGA
1 AAAATTATAAAATCTGAAAAAATAGGGGT
* *
51517860 AAAATTGTAAAAT-TTAGAAAAATAGGGGT
1 AAAATTATAAAATCTGA-AAAAATAGGGGT
*
51517889 AAAATTATAAAATCT-AAGAAATA
1 AAAATTATAAAATCTGAAAAAATA
51517912 AGGGACACAT
Statistics
Matches: 144, Mismatches: 32, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
23 14 0.10
24 5 0.03
25 4 0.03
26 3 0.02
27 20 0.14
28 47 0.33
29 48 0.33
30 3 0.02
ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23
Consensus pattern (29 bp):
AAAATTATAAAATCTGAAAAAATAGGGGT
Found at i:51517788 original size:23 final size:23
Alignment explanation
Indices: 51517753--51517796 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
51517743 AATAAAGGGT
51517753 AAAACTGTAAAATCTAAAAAAGA
1 AAAACTGTAAAATCTAAAAAAGA
* * *
51517776 AAAATTGTCAAATCTGAAAAA
1 AAAACTGTAAAATCTAAAAAA
51517797 TAGACGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.09, G:0.09, T:0.20
Consensus pattern (23 bp):
AAAACTGTAAAATCTAAAAAAGA
Found at i:51520387 original size:26 final size:26
Alignment explanation
Indices: 51520358--51520414 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
51520348 CCCTTAACAT
*
51520358 AATTTTGAAGATTTTACCCCTAGTAA
1 AATTTTGAAGATTTTACCCATAGTAA
* * *
51520384 AATTTTGACGATTTTGCCCATTGTAA
1 AATTTTGAAGATTTTACCCATAGTAA
51520410 AATTT
1 AATTT
51520415 CTAGAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (26 bp):
AATTTTGAAGATTTTACCCATAGTAA
Found at i:51520578 original size:6 final size:6
Alignment explanation
Indices: 51520563--51520597 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
51520553 GCTAATGGGT
* *
51520563 CATTTC CATTTT CATTTA CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
51520598 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.20, C:0.26, G:0.00, T:0.54
Consensus pattern (6 bp):
CATTTC
Found at i:51520586 original size:18 final size:18
Alignment explanation
Indices: 51520563--51520597 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51520553 GCTAATGGGT
*
51520563 CATTTCCATTTTCATTTA
1 CATTTCCATTTCCATTTA
51520581 CATTTCCATTTCCATTT
1 CATTTCCATTTCCATTT
51520598 TTGGAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.00, T:0.54
Consensus pattern (18 bp):
CATTTCCATTTCCATTTA
Found at i:51533600 original size:25 final size:25
Alignment explanation
Indices: 51533566--51533643 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
51533556 CGGTAAGATT
* *
51533566 TTTGACAATTTTACCCATAGTAAAA
1 TTTGATAATTTTGCCCATAGTAAAA
51533591 TTTGATAATTTTGCCCATAGTAAAA
1 TTTGATAATTTTGCCCATAGTAAAA
* *
51533616 TTTGATAATTTTGCCCTTACTAAAA
1 TTTGATAATTTTGCCCATAGTAAAA
51533641 TTT
1 TTT
51533644 CAAGAAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (25 bp):
TTTGATAATTTTGCCCATAGTAAAA
Found at i:51534633 original size:14 final size:16
Alignment explanation
Indices: 51534602--51534634 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
51534592 TTTATTCATA
51534602 AATATTTATATCATTG
1 AATATTTATATCATTG
51534618 AATA-TTATAT-ATTG
1 AATATTTATATCATTG
51534632 AAT
1 AAT
51534635 TTAAGTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 6 0.35
16 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (16 bp):
AATATTTATATCATTG
Found at i:51538339 original size:26 final size:26
Alignment explanation
Indices: 51538303--51538359 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
51538293 ACAAACAGAA
*
51538303 ACAAATACAG-ATCCAGATTCAGGTAT
1 ACAAATACAGAAT-CAGATTCAGATAT
51538329 -CAAATTACAGAATCAGATTCAGATAT
1 ACAAA-TACAGAATCAGATTCAGATAT
51538355 ACAAA
1 ACAAA
51538360 ATCCTAACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 4 0.15
26 17 0.63
27 6 0.22
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (26 bp):
ACAAATACAGAATCAGATTCAGATAT
Found at i:51540614 original size:23 final size:22
Alignment explanation
Indices: 51540558--51540614 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 22
51540548 ATCCTATAAT
51540558 TATTTCTG-AA-ACTTAGATAG
1 TATTTCTGAAACACTTAGATAG
*
51540578 TATATTTTGAAAACACTATAGATAG
1 TAT-TTCTG-AAACACT-TAGATAG
51540603 TATTTCTGAAAC
1 TATTTCTGAAAC
51540615 TGTATTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
23 6 0.20
24 7 0.23
25 10 0.33
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (22 bp):
TATTTCTGAAACACTTAGATAG
Found at i:51541640 original size:12 final size:12
Alignment explanation
Indices: 51541623--51541648 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51541613 CAGACCTACC
51541623 ACACGGGTGACT
1 ACACGGGTGACT
51541635 ACACGGGTGACT
1 ACACGGGTGACT
51541647 AC
1 AC
51541649 TCGCACACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.15
Consensus pattern (12 bp):
ACACGGGTGACT
Found at i:51543294 original size:23 final size:22
Alignment explanation
Indices: 51543238--51543294 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 22
51543228 ATCCTATAAT
51543238 TATTTCTG-AA-ACTTAGATAG
1 TATTTCTGAAACACTTAGATAG
*
51543258 TATATTTTGAAAACACTATAGATAG
1 TAT-TTCTG-AAACACT-TAGATAG
51543283 TATTTCTGAAAC
1 TATTTCTGAAAC
51543295 TGTATTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
23 6 0.20
24 7 0.23
25 10 0.33
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (22 bp):
TATTTCTGAAACACTTAGATAG
Found at i:51544320 original size:12 final size:12
Alignment explanation
Indices: 51544303--51544328 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51544293 CAGACCTACC
51544303 ACACGGGTGACT
1 ACACGGGTGACT
51544315 ACACGGGTGACT
1 ACACGGGTGACT
51544327 AC
1 AC
51544329 TCGCACACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.15
Consensus pattern (12 bp):
ACACGGGTGACT
Found at i:51545974 original size:23 final size:22
Alignment explanation
Indices: 51545918--51545974 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 22
51545908 ATCCTATAAT
51545918 TATTTCTG-AA-ACTTAGATAG
1 TATTTCTGAAACACTTAGATAG
*
51545938 TATATTTTGAAAACACTATAGATAG
1 TAT-TTCTG-AAACACT-TAGATAG
51545963 TATTTCTGAAAC
1 TATTTCTGAAAC
51545975 TGTATTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
23 6 0.20
24 7 0.23
25 10 0.33
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (22 bp):
TATTTCTGAAACACTTAGATAG
Found at i:51551066 original size:5 final size:5
Alignment explanation
Indices: 51551058--51551083 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51551048 TTTTATTTTA
51551058 TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT T
51551084 TTGATTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:51553937 original size:42 final size:42
Alignment explanation
Indices: 51553877--51553959 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
51553867 ATGACTTCAT
51553877 TTTTTTTCATTTCATTTTTACACAAATACCCATTTATATCCA
1 TTTTTTTCATTTCATTTTTACACAAATACCCATTTATATCCA
*
51553919 TTTTTTTCATTTCGTTTTTACACAAATACCCATTTATATCC
1 TTTTTTTCATTTCATTTTTACACAAATACCCATTTATATCC
51553960 TACCGGCTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.22, G:0.01, T:0.51
Consensus pattern (42 bp):
TTTTTTTCATTTCATTTTTACACAAATACCCATTTATATCCA
Found at i:51558321 original size:43 final size:42
Alignment explanation
Indices: 51558273--51558428 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
51558263 AGCTCATGCA
* * *
51558273 ATGCCAACGTCCCATACATAGTCTTACATGTAATCAAATTTCG
1 ATGCCAACATCCCAAACATGGTCTTACATGTAATCAAA-TTCG
* * * *
51558316 ATGCC-ACTGTCCCAAACAGGGTCTTACATGAAATCAAATACG
1 ATGCCAAC-ATCCCAAACATGGTCTTACATGTAATCAAATTCG
* * *
51558358 ATGCCAACATCCC--AGATGTGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACATCCCAAACATG-GTCTTACATGT-AATCA-AATTCG
51558401 ATGCCAACATCCCAAACATGGTCTTACA
1 ATGCCAACATCCCAAACATGGTCTTACA
51558429 CGATATCACT
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
40 3 0.03
41 9 0.10
42 19 0.20
43 50 0.54
44 8 0.09
45 4 0.04
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (42 bp):
ATGCCAACATCCCAAACATGGTCTTACATGTAATCAAATTCG
Found at i:51560966 original size:20 final size:20
Alignment explanation
Indices: 51560943--51560982 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51560933 AATTTAAAGT
51560943 ACATTAAAACTTTATCTTTA
1 ACATTAAAACTTTATCTTTA
51560963 ACATTAAAACTTTATCTTTA
1 ACATTAAAACTTTATCTTTA
51560983 TCATGATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (20 bp):
ACATTAAAACTTTATCTTTA
Found at i:51563237 original size:26 final size:26
Alignment explanation
Indices: 51563201--51563310 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
51563191 TGATACAAAT
51563201 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
51563227 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
51563253 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
51563279 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
51563305 TGATAA
1 TGATAA
51563311 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:51569006 original size:26 final size:26
Alignment explanation
Indices: 51568970--51569079 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
51568960 TGATACAAAT
51568970 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
51568996 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
51569022 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
51569048 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
51569074 TGATAA
1 TGATAA
51569080 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:51571825 original size:3 final size:3
Alignment explanation
Indices: 51571817--51571854 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
51571807 TGTCATTTGC
51571817 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
51571855 AACACGTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:51582999 original size:50 final size:50
Alignment explanation
Indices: 51582944--51583046 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
51582934 TTAAAAGAAA
* *
51582944 AAAGAAAATATCCATAGATATTCAAATGAGTACGGTGTATTTTGCAATTC
1 AAAGAAAATATCCATAGATATTCAAACGAGTACGGTGTATTTTGAAATTC
51582994 AAAGAAAATATCCATAGATATTCAAACGAGTACGGTGTATTTTGAAATTC
1 AAAGAAAATATCCATAGATATTCAAACGAGTACGGTGTATTTTGAAATTC
51583044 AAA
1 AAA
51583047 TGATAACAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.30
Consensus pattern (50 bp):
AAAGAAAATATCCATAGATATTCAAACGAGTACGGTGTATTTTGAAATTC
Found at i:51593610 original size:13 final size:12
Alignment explanation
Indices: 51593592--51593651 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 12
51593582 AAATAATTCA
51593592 AAATTTAAAAAT
1 AAATTTAAAAAT
*
51593604 CAAATTT-AAACT
1 -AAATTTAAAAAT
**
51593616 AGAATTTAAATTT
1 A-AATTTAAAAAT
51593629 AAAATTTAAAAATT
1 -AAATTTAAAAA-T
51593643 AAATTTAAA
1 AAATTTAAA
51593652 CTAGAATTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
11 1 0.03
12 9 0.24
13 26 0.68
14 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (12 bp):
AAATTTAAAAAT
Found at i:51593623 original size:12 final size:12
Alignment explanation
Indices: 51593606--51593667 Score: 63
Period size: 12 Copynumber: 5.0 Consensus size: 12
51593596 TTAAAAATCA
51593606 AATTTAAACTAG
1 AATTTAAACTAG
* *
51593618 AATTTAAATTTAA
1 AATTTAAA-CTAG
*
51593631 AATTTAAAAATTA-
1 AATTT--AAACTAG
51593644 AATTTAAACTAG
1 AATTTAAACTAG
51593656 AATTTAAACTAG
1 AATTTAAACTAG
51593668 TTACAGAGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
11 5 0.12
12 20 0.47
13 12 0.28
14 3 0.07
15 3 0.07
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (12 bp):
AATTTAAACTAG
Found at i:51593633 original size:38 final size:38
Alignment explanation
Indices: 51593586--51593663 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
51593576 ATCACTAAAT
51593586 AATTCAAAATTTAAAAATCAAATTTAAACTAGAATTTA
1 AATTCAAAATTTAAAAATCAAATTTAAACTAGAATTTA
* *
51593624 AATTTAAAATTTAAAAATTAAATTTAAACTAGAATTTA
1 AATTCAAAATTTAAAAATCAAATTTAAACTAGAATTTA
51593662 AA
1 AA
51593664 CTAGTTACAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (38 bp):
AATTCAAAATTTAAAAATCAAATTTAAACTAGAATTTA
Found at i:51594235 original size:23 final size:23
Alignment explanation
Indices: 51594192--51594272 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 23
51594182 TAATGTTCAC
* *
51594192 GAACATGTTCATTTAA-TTTAATT
1 GAACATGTTCA-TGAACATTAATT
* *
51594215 GGACATGTTCATGAACATTAAAT
1 GAACATGTTCATGAACATTAATT
51594238 GAACATGTTCATGAACATATAATT
1 GAACATGTTCATGAACAT-TAATT
*
51594262 GAACATATTCA
1 GAACATGTTCA
51594273 CAATGTTAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 3 0.06
23 32 0.65
24 14 0.29
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (23 bp):
GAACATGTTCATGAACATTAATT
Found at i:51594251 original size:12 final size:12
Alignment explanation
Indices: 51594217--51594255 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
51594207 ATTTAATTGG
51594217 ACATGTTCATGA
1 ACATGTTCATGA
**
51594229 ACAT-TAAATGA
1 ACATGTTCATGA
51594240 ACATGTTCATGA
1 ACATGTTCATGA
51594252 ACAT
1 ACAT
51594256 ATAATTGAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (12 bp):
ACATGTTCATGA
Found at i:51594738 original size:22 final size:21
Alignment explanation
Indices: 51594712--51594761 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
51594702 AAATATTAAA
51594712 AATAATATTTTTAT-AATTTTTT
1 AATAAT-TTTTT-TGAATTTTTT
51594734 AATAATTTTTTTGAA-TTTTT
1 AATAATTTTTTTGAATTTTTT
51594754 AA-AATTTT
1 AATAATTTT
51594762 AAAAGATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 6 0.22
20 8 0.30
21 7 0.26
22 6 0.22
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
AATAATTTTTTTGAATTTTTT
Found at i:51627739 original size:14 final size:14
Alignment explanation
Indices: 51627720--51627750 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
51627710 TACCAAAGCT
51627720 TGTCTAATTGATAG
1 TGTCTAATTGATAG
51627734 TGTCTAATTGATAG
1 TGTCTAATTGATAG
51627748 TGT
1 TGT
51627751 GTTGACTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (14 bp):
TGTCTAATTGATAG
Found at i:51632619 original size:13 final size:13
Alignment explanation
Indices: 51632601--51632628 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51632591 GCAATAGAAG
51632601 ATGAATTAGCTGA
1 ATGAATTAGCTGA
51632614 ATGAATTAGCTGA
1 ATGAATTAGCTGA
51632627 AT
1 AT
51632629 ATAGAACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (13 bp):
ATGAATTAGCTGA
Found at i:51634478 original size:98 final size:98
Alignment explanation
Indices: 51634309--51634506 Score: 360
Period size: 98 Copynumber: 2.0 Consensus size: 98
51634299 AAAGATATCT
51634309 TATTGAATAATGATTATAAACATATATTCACACAAACTATAATCATGCATTAGTCCTCAAAATCA
1 TATTGAATAATGATTATAAACATATATTCACACAAACTATAATCATGCATTAGTCCTCAAAATCA
51634374 TTGATATGCATATAATATAAATACACACAATTA
66 TTGATATGCATATAATATAAATACACACAATTA
* * *
51634407 TATTGAATAATGGTTATAAGCATATATTCGCACAAACTATAATCATGCATTAGTCCTCAAAATCA
1 TATTGAATAATGATTATAAACATATATTCACACAAACTATAATCATGCATTAGTCCTCAAAATCA
*
51634472 TTGATATGCATATAATATATATACACACAATTA
66 TTGATATGCATATAATATAAATACACACAATTA
51634505 TA
1 TA
51634507 ATAATAGAAA
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (98 bp):
TATTGAATAATGATTATAAACATATATTCACACAAACTATAATCATGCATTAGTCCTCAAAATCA
TTGATATGCATATAATATAAATACACACAATTA
Found at i:51636523 original size:13 final size:14
Alignment explanation
Indices: 51636497--51636525 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51636487 ACTAACGACG
51636497 AATTAAACCATTAT
1 AATTAAACCATTAT
51636511 AATTAAA-CATTAT
1 AATTAAACCATTAT
51636524 AA
1 AA
51636526 ATATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:51638357 original size:27 final size:27
Alignment explanation
Indices: 51638327--51638504 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
51638317 ATATTGAGCC
* *
51638327 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
51638354 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
51638381 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
51638409 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
51638436 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
51638463 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
51638490 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51638505 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:51638439 original size:55 final size:54
Alignment explanation
Indices: 51638327--51638504 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
51638317 ATATTGAGCC
* * * * *
51638327 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
51638381 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
51638436 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
51638490 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51638505 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:51644813 original size:16 final size:16
Alignment explanation
Indices: 51644792--51645188 Score: 127
Period size: 16 Copynumber: 24.8 Consensus size: 16
51644782 ATTAAGTTAA
*
51644792 GTAAGTCATGTATTAT
1 GTAAGTTATGTATTAT
51644808 GTAAGTTATGTAAATTAT
1 GTAAGTTATGT--ATTAT
* *
51644826 GTAAGTTATGAATTTT
1 GTAAGTTATGTATTAT
** **
51644842 G-ATCTT-TAAATTAT
1 GTAAGTTATGTATTAT
51644856 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
51644872 GTAAGTTATGAAATT-T
1 GTAAGTTATG-TATTAT
**
51644888 G-ATCTTTAAAT-TATTAT
1 GTA-AGTT--ATGTATTAT
51644905 GTAAGTTATGTAAATTAT
1 GTAAGTTATGT--ATTAT
* *
51644923 GTAACTTATGAAATT-T
1 GTAAGTTATG-TATTAT
* *
51644939 G-ATGGATTA--AATTAT
1 GTA-AG-TTATGTATTAT
*
51644954 GTAAGTTATGAAATT-T
1 GTAAGTTATG-TATTAT
*
51644970 G-AACTTTAAAT-TATTAT
1 GTAA-GTT--ATGTATTAT
51644987 GTAAGTTATGTAAATTAT
1 GTAAGTTATGT--ATTAT
* *
51645005 GTAACTTATGAAATT-T
1 GTAAGTTATG-TATTAT
* **
51645021 G---GTCTTTAAATTAT
1 GTAAGT-TATGTATTAT
*
51645035 GTAAGTTATGTATCAT
1 GTAAGTTATGTATTAT
*
51645051 GTAAGTTATGAAATT-T
1 GTAAGTTATG-TATTAT
** **
51645067 G-ATCTT-TAAATTAT
1 GTAAGTTATGTATTAT
*
51645081 GTAAGTCATGTATTAT
1 GTAAGTTATGTATTAT
51645097 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
51645113 GTAAGTTAAGTAAATTAT
1 GTAAGTTATGT--ATTAT
*
51645131 GTAAGTTATGAAATT-T
1 GTAAGTTATG-TATTAT
* **
51645147 G-AACTT-TAAATTAT
1 GTAAGTTATGTATTAT
51645161 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
51645177 GTAAATTATGTA
1 GTAAGTTATGTA
51645189 AATTATGTGA
Statistics
Matches: 282, Mismatches: 54, Indels: 90
0.66 0.13 0.21
Matches are distributed among these distances:
13 13 0.05
14 24 0.09
15 30 0.11
16 120 0.43
17 31 0.11
18 64 0.23
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:51644816 original size:9 final size:9
Alignment explanation
Indices: 51644784--51645201 Score: 123
Period size: 9 Copynumber: 45.7 Consensus size: 9
51644774 TAAGTATAAT
*
51644784 TAAGTTAAG
1 TAAGTTATG
*
51644793 TAAGTCATG
1 TAAGTTATG
51644802 T-A-TTATG
1 TAAGTTATG
51644809 TAAGTTATG
1 TAAGTTATG
*
51644818 TAAATTATG
1 TAAGTTATG
51644827 TAAGTTATG
1 TAAGTTATG
* *
51644836 -AATTTTGATCTT
1 TAA-GTT-A--TG
*
51644848 TAAATTATG
1 TAAGTTATG
51644857 TAAGTTATG
1 TAAGTTATG
51644866 T-A-TTATG
1 TAAGTTATG
51644873 TAAGTTATG
1 TAAGTTATG
* * *
51644882 AAATTTGATCTT
1 TAAGTT-A--TG
*
51644894 TAAATTATTATG
1 T-AA--GTTATG
51644906 TAAGTTATG
1 TAAGTTATG
*
51644915 TAAATTATG
1 TAAGTTATG
*
51644924 TAACTTATG
1 TAAGTTATG
* *
51644933 AAATTTGATGG
1 TAAGTT-AT-G
*
51644944 ATTAAATTATG
1 --TAAGTTATG
51644955 TAAGTTATG
1 TAAGTTATG
*
51644964 -AAATT-TG
1 TAAGTTATG
* **
51644971 -AACTTTAAA
1 TAA-GTTATG
*
51644980 TTA-TTATG
1 TAAGTTATG
51644988 TAAGTTATG
1 TAAGTTATG
*
51644997 TAAATTATG
1 TAAGTTATG
*
51645006 TAACTTATG
1 TAAGTTATG
* * * *
51645015 AAATTTGGTCTT
1 TAA---GTTATG
*
51645027 TAAATTATG
1 TAAGTTATG
51645036 TAAGTTATG
1 TAAGTTATG
*
51645045 T-A-TCATG
1 TAAGTTATG
51645052 TAAGTTATG
1 TAAGTTATG
* * *
51645061 AAATTTGATCTT
1 TAAGTT-A--TG
*
51645073 TAAATTATG
1 TAAGTTATG
*
51645082 TAAGTCATG
1 TAAGTTATG
51645091 T-A-TTATG
1 TAAGTTATG
51645098 TAAGTTATG
1 TAAGTTATG
51645107 T-A-TTATG
1 TAAGTTATG
*
51645114 TAAGTTAAG
1 TAAGTTATG
*
51645123 TAAATTATG
1 TAAGTTATG
51645132 TAAGTTATG
1 TAAGTTATG
* * *
51645141 AAATTTGAACTT
1 TAAGTT--A-TG
*
51645153 TAAATTATG
1 TAAGTTATG
51645162 TAAGTTATG
1 TAAGTTATG
51645171 T-A-TTATG
1 TAAGTTATG
*
51645178 TAAATTATG
1 TAAGTTATG
*
51645187 TAAATTATG
1 TAAGTTATG
*
51645196 TGAGTT
1 TAAGTT
51645202 GCTGGTGAAC
Statistics
Matches: 300, Mismatches: 69, Indels: 80
0.67 0.15 0.18
Matches are distributed among these distances:
7 37 0.12
8 25 0.08
9 191 0.64
10 7 0.02
11 7 0.02
12 22 0.07
13 8 0.03
14 1 0.00
15 2 0.01
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:51644883 original size:46 final size:46
Alignment explanation
Indices: 51644803--51645106 Score: 328
Period size: 46 Copynumber: 6.7 Consensus size: 46
51644793 TAAGTCATGT
*
51644803 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAA
1 ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCTTTAA
51644851 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTT-AA
* **
51644898 TTATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGATGGATTAA
1 --ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGAT-CTTTAA
* **
51644949 ATTATGTAAGTTATG----A---AA-TT-TGAACTTT-A-AATT-A
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
* *
51644983 -TTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCTTTAA
1 ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCTTTAA
*
51645030 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
*
51645076 ATTATGTAAGTCATGTATTATGTAAGTTATG
1 ATTATGTAAGTTATGTATTATGTAAGTTATG
51645107 TATTATGTAA
Statistics
Matches: 220, Mismatches: 15, Indels: 44
0.79 0.05 0.16
Matches are distributed among these distances:
33 14 0.06
34 1 0.00
35 3 0.01
37 1 0.00
38 7 0.03
39 3 0.01
40 2 0.01
42 2 0.01
43 3 0.01
44 7 0.03
46 85 0.39
47 3 0.01
48 31 0.14
49 31 0.14
51 25 0.11
52 2 0.01
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (46 bp):
ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
Found at i:51644969 original size:82 final size:81
Alignment explanation
Indices: 51644867--51645044 Score: 311
Period size: 82 Copynumber: 2.2 Consensus size: 81
51644857 TAAGTTATGT
*
51644867 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
*
51644932 GAAATTTGATGGATTAA
66 GAAATTTGAT-CATTAA
51644949 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
* *
51645014 GAAATTTGGTCTTTAA
66 GAAATTTGATCATTAA
51645030 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
51645045 TATCATGTAA
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
81 19 0.21
82 73 0.79
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.46
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
GAAATTTGATCATTAA
Found at i:51644999 original size:179 final size:174
Alignment explanation
Indices: 51644802--51645192 Score: 551
Period size: 179 Copynumber: 2.2 Consensus size: 174
51644792 GTAAGTCATG
* *
51644802 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAAATTATGTAAGTTATGT
1 TATTATGTAAGTTATGTAAATTATGTAAATTATGAAATTTGATCTTTAAATTATGTAAGTTATGT
* *
51644867 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
66 ATCATGTAAGTTATGAAATTTGATCTTT-AA--ATTATGTAAGTCATGT--ATTATGTAACTTAT
* *
51644932 GAAATT-TG-A-TGGATTAAATTATGTAAGTTATGAAATTTGAACTTTAAA
126 G-AATTATGAAGTGAAGTAAATTATGTAAGTTATGAAATTTGAACTTT-AA
* *
51644980 TTATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATG
1 -TATTATGTAAGTTATGTAAATTATGTAAATTATGAAATTTGATCTTTAAATTATGTAAGTTATG
* *
51645045 TATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAAGTTATGTAT
65 TATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAACTTATGAAT
*
51645110 TATGTAAGTTAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
130 TATG-AAGTGAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
51645156 -ATTATGTAAGTTATGT--ATTATGTAAATTATGTAAATT
1 TATTATGTAAGTTATGTAAATTATGTAAATTATG-AAATT
51645193 ATGTGAGTTG
Statistics
Matches: 196, Mismatches: 11, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
172 14 0.07
173 8 0.04
174 32 0.16
176 18 0.09
177 33 0.17
178 2 0.01
179 89 0.45
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.46
Consensus pattern (174 bp):
TATTATGTAAGTTATGTAAATTATGTAAATTATGAAATTTGATCTTTAAATTATGTAAGTTATGT
ATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAACTTATGAATT
ATGAAGTGAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
Found at i:51645141 original size:80 final size:78
Alignment explanation
Indices: 51645030--51645188 Score: 255
Period size: 80 Copynumber: 2.0 Consensus size: 78
51645020 TGGTCTTTAA
* *
51645030 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATT
1 ATTATGTAAGTTAAGTATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTATT
*
51645095 ATGTAAGTTATGT
66 ATGTAAATTATGT
* *
51645108 ATTATGTAAGTTAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGTA
1 ATTATGTAAGTTAAGT--ATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTA
51645173 TTATGTAAATTATGT
64 TTATGTAAATTATGT
51645188 A
1 A
51645189 AATTATGTGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
78 15 0.20
80 59 0.80
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (78 bp):
ATTATGTAAGTTAAGTATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTATT
ATGTAAATTATGT
Found at i:51645170 original size:30 final size:30
Alignment explanation
Indices: 51644915--51645086 Score: 102
Period size: 31 Copynumber: 5.5 Consensus size: 30
51644905 GTAAGTTATG
* ***
51644915 TAAATTATGTAACTTATGAAATTTGATGGAT
1 TAAATTATGTAAGTTATGAAATTTGA-ACTT
51644946 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
51644976 TAAATTATTATGTAAGTTATGTAAATTATGTAACTT
1 T-AA--ATTATGTAAGTTATG-AAATT-TG-AACTT
* *
51645012 ATGAAATT-TG---GTCT-TTAAATTATGTAAGTT
1 -T-AAATTATGTAAGT-TATGAAATT-TG-AACTT
** * *
51645042 ATGTATCATGTAAGTTATGAAATTTGATCTT
1 -TAAATTATGTAAGTTATGAAATTTGAACTT
51645073 TAAATTATGTAAGT
1 TAAATTATGTAAGT
51645087 CATGTATTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 27
0.72 0.10 0.17
Matches are distributed among these distances:
29 2 0.02
30 30 0.27
31 33 0.29
32 4 0.04
33 23 0.21
34 7 0.06
35 5 0.04
36 5 0.04
37 3 0.03
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGAACTT
Found at i:51645243 original size:17 final size:17
Alignment explanation
Indices: 51645221--51645254 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51645211 CTTGAAAAAA
51645221 ATATATTACTTTTGAAT
1 ATATATTACTTTTGAAT
51645238 ATATATTACTTTTGAAT
1 ATATATTACTTTTGAAT
51645255 TAGAAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTACTTTTGAAT
Found at i:51646717 original size:14 final size:14
Alignment explanation
Indices: 51646698--51646726 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51646688 ATACAATTTA
51646698 ATTTTACTTCATAT
1 ATTTTACTTCATAT
51646712 ATTTTACTTCATAT
1 ATTTTACTTCATAT
51646726 A
1 A
51646727 ATTATTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTACTTCATAT
Found at i:51647767 original size:27 final size:26
Alignment explanation
Indices: 51647692--51647768 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 26
51647682 AATATTTTAG
* *
51647692 TTTACCAAATTACTGAAATACCCTTGA
1 TTTACAAAATTA-TGAAATACCCTCGA
* ** **
51647719 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTATGAAA-TACCCTCGA
51647746 TTTACAAAATTATTGAAATACCC
1 TTTACAAAATTA-TGAAATACCC
51647769 CTGTAGGGTA
Statistics
Matches: 36, Mismatches: 12, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
26 3 0.08
27 30 0.83
28 3 0.08
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (26 bp):
TTTACAAAATTATGAAATACCCTCGA
Found at i:51647783 original size:27 final size:27
Alignment explanation
Indices: 51647760--51647921 Score: 207
Period size: 27 Copynumber: 6.0 Consensus size: 27
51647750 CAAAATTATT
*
51647760 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51647787 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51647814 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
51647841 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51647868 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* ** * *
51647895 GAGATACCATTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
51647922 ATTTTGCCCC
Statistics
Matches: 119, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:51647795 original size:54 final size:53
Alignment explanation
Indices: 51647698--51647902 Score: 159
Period size: 54 Copynumber: 3.8 Consensus size: 53
51647688 TTAGTTTACC
* ** * *
51647698 AAATTACTGAAATACCCTTG-ACTTGTAAAATTACC-AAAGTACCCTCGATTTA-CA
1 AAATTACTGAAATACCCCTGTA-GGGTAGAATTACCGAAA-TACCCTC--TGTAGCA
* * *
51647752 AAATTATTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCC-CTGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTCTGTA--GCA
* * *
51647806 GAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT-TGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTCTGTA--GCA
* * * * *
51647860 AAAATACCGAAATACCCCTATAGGGTAGAATTATCGAGATACC
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
51647903 ATTGTGGGGT
Statistics
Matches: 126, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
51 3 0.02
53 1 0.01
54 118 0.94
55 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (53 bp):
AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTCTGTAGCA
Found at i:51648281 original size:26 final size:27
Alignment explanation
Indices: 51648245--51648311 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
51648235 ACTGATCGAT
*
51648245 GGCTGAGTGCCAATCAT-GTTACCGAA
1 GGCTGTGTGCCAATCATAGTTACCGAA
* * * *
51648271 GGCTGTGTGCCAAACATATTTGCCTAA
1 GGCTGTGTGCCAATCATAGTTACCGAA
51648298 GGCTGTGTGCCAAT
1 GGCTGTGTGCCAAT
51648312 ATATGATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 15 0.44
27 19 0.56
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (27 bp):
GGCTGTGTGCCAATCATAGTTACCGAA
Found at i:51648347 original size:32 final size:32
Alignment explanation
Indices: 51648310--51648375 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
51648300 CTGTGTGCCA
51648310 ATATATGATTATTGACGACTCGTGTCTATCAT
1 ATATATGATTATTGACGACTCGTGTCTATCAT
*
51648342 ATATATGATTATTGATGACTCGTGTCTATCAT
1 ATATATGATTATTGACGACTCGTGTCTATCAT
51648374 AT
1 AT
51648376 TTACTCAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (32 bp):
ATATATGATTATTGACGACTCGTGTCTATCAT
Found at i:51648518 original size:22 final size:22
Alignment explanation
Indices: 51648466--51648528 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
51648456 GCCAATTATT
*
51648466 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
51648488 CT-ACGTATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
51648510 CTGATTATGG-TTGTGTGCC
1 CTGATTATGGCTT-TGTGCC
51648529 GTTATTGTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
21 3 0.09
22 31 0.89
23 1 0.03
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:51648625 original size:27 final size:26
Alignment explanation
Indices: 51648595--51648674 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
51648585 ATTCTGTTAA
* *
51648595 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
51648622 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
51648649 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
51648675 ACAGCCATGC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
26 5 0.10
27 43 0.90
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:51648802 original size:6 final size:6
Alignment explanation
Indices: 51648793--51648897 Score: 72
Period size: 6 Copynumber: 16.8 Consensus size: 6
51648783 TTGCATTCAC
* * **
51648793 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCAA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
51648843 ATTCTG ATTCTG ATTTTGG ATTCTG ATTCT- ATCACTTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCT-G ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG
51648893 ATTCT
1 ATTCT
51648898 CATTTTAATT
Statistics
Matches: 77, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
5 5 0.06
6 57 0.74
7 11 0.14
8 4 0.05
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:51648824 original size:25 final size:25
Alignment explanation
Indices: 51648796--51648857 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
51648786 CATTCACATT
* **
51648796 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCAAATA
*
51648821 CTGATTCTGATTCTGTCACCAAATT
1 CTGATTCTGATTCTGTCACCAAATA
51648846 CTGATTCTGATT
1 CTGATTCTGATT
51648858 TTGGATTCTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCAAATA
Done.