Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 178 of 259
Found at i:57829172 original size:32 final size:32
Alignment explanation
Indices: 57829136--57829254 Score: 163
Period size: 32 Copynumber: 3.8 Consensus size: 32
57829126 AAATGAGTGG
57829136 TTTTGTGAAATGATAACAAATATCAACTTTCA
1 TTTTGTGAAATGATAACAAATATCAACTTTCA
*
57829168 TTTTGTGAAATGCTAACAAAT-TACAAC-TTCAA
1 TTTTGTGAAATGATAACAAATAT-CAACTTTC-A
* *
57829200 TTTTGTAAAATGATAACAAATATCAACTTTAA
1 TTTTGTGAAATGATAACAAATATCAACTTTCA
*
57829232 TTTTGTTAAATGATAAC-AATATC
1 TTTTGTGAAATGATAACAAATATC
57829255 CCTCTGAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
31 10 0.13
32 65 0.83
33 3 0.04
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (32 bp):
TTTTGTGAAATGATAACAAATATCAACTTTCA
Found at i:57832238 original size:42 final size:42
Alignment explanation
Indices: 57832174--57832255 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
57832164 TTTTTGAGGC
*
57832174 TTTTCATAACTCAACATCAAAGACGAAGTGTTTTCTCAAAAT
1 TTTTCATAACTCAACATCAAAGACCAAGTGTTTTCTCAAAAT
* *
57832216 TTTTCATAATTCAACATGAAAGACCAAGTGTTTTCTCAAA
1 TTTTCATAACTCAACATCAAAGACCAAGTGTTTTCTCAAA
57832256 TGATTTTGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (42 bp):
TTTTCATAACTCAACATCAAAGACCAAGTGTTTTCTCAAAAT
Found at i:57833562 original size:30 final size:30
Alignment explanation
Indices: 57833528--57833590 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
57833518 ACTTATTTTA
57833528 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
57833558 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
57833588 TTG
1 TTG
57833591 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:57833603 original size:30 final size:30
Alignment explanation
Indices: 57833528--57833607 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
57833518 ACTTATTTTA
**
57833528 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTAAGTTATTATTTTAAAGGCAT
** *
57833558 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTAAGTTATTATTTTAAAGGCAT
*
57833588 TTGCTT-GTTAAGTTA-TATTT
1 TTG-TTAATTAAGTTATTATTT
57833608 ATCTTAGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
29 5 0.11
30 38 0.84
31 2 0.04
ACGTcount: A:0.24, C:0.04, G:0.15, T:0.57
Consensus pattern (30 bp):
TTGTTAATTAAGTTATTATTTTAAAGGCAT
Found at i:57833727 original size:11 final size:11
Alignment explanation
Indices: 57833711--57833740 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
57833701 TATATATATT
57833711 TAAAAATTATA
1 TAAAAATTATA
*
57833722 TAAAAATAATA
1 TAAAAATTATA
57833733 TAAAAATT
1 TAAAAATT
57833741 TAATACGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:57836182 original size:12 final size:12
Alignment explanation
Indices: 57836165--57836199 Score: 63
Period size: 11 Copynumber: 3.0 Consensus size: 12
57836155 TGTTCATAAT
57836165 TTTAATATTAAA
1 TTTAATATTAAA
57836177 TTTAATATT-AA
1 TTTAATATTAAA
57836188 TTTAATATTAAA
1 TTTAATATTAAA
57836200 GTGATTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:57840814 original size:24 final size:24
Alignment explanation
Indices: 57840787--57840839 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
57840777 AATTTAGTCA
*
57840787 TTTTTATTTTTA-TTGCATTTTATT
1 TTTTTATTTTTAGTTGAATTTT-TT
*
57840811 TTTTTATTTTTAGTTTAATTTTTT
1 TTTTTATTTTTAGTTGAATTTTTT
57840835 TTTTT
1 TTTTT
57840840 CTAATTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (24 bp):
TTTTTATTTTTAGTTGAATTTTTT
Found at i:57846931 original size:43 final size:44
Alignment explanation
Indices: 57846884--57846966 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
57846874 TCTTTCTATT
* *
57846884 ATTATTAGGTATCTTATT-TATTTCTTTATTGTTTATTATTATG
1 ATTATTAGGTATCTTATTCTATTTATTTACTGTTTATTATTATG
* * *
57846927 ATTATTAGTTATTTTATTCTCTTTATTTACTGTTTATTAT
1 ATTATTAGGTATCTTATTCTATTTATTTACTGTTTATTAT
57846967 CTATTTTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 16 0.47
44 18 0.53
ACGTcount: A:0.23, C:0.06, G:0.07, T:0.64
Consensus pattern (44 bp):
ATTATTAGGTATCTTATTCTATTTATTTACTGTTTATTATTATG
Found at i:57849708 original size:20 final size:21
Alignment explanation
Indices: 57849665--57849710 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
57849655 ACTGTTTTGT
57849665 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
57849685 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
57849704 TATGGGC
1 TATGGGC
57849711 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:57856324 original size:29 final size:30
Alignment explanation
Indices: 57856291--57856350 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
57856281 TTCGATCCAA
*
57856291 TGTGTAATGTTACACAT-TAACTTTGATTT
1 TGTGTAATGTTACACATGAAACTTTGATTT
* * *
57856320 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGTAATGTTACACATGAAACTTTGATTT
57856350 T
1 T
57856351 ATTCAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.52
Consensus pattern (30 bp):
TGTGTAATGTTACACATGAAACTTTGATTT
Found at i:57858688 original size:14 final size:14
Alignment explanation
Indices: 57858652--57858694 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
57858642 ACTAAAAAAC
*
57858652 AAATTCAAGAATAAAA
1 AAATTCAA-AAT-TAA
57858668 AAATTCAAAATTAA
1 AAATTCAAAATTAA
*
57858682 AATTTCAAAATTA
1 AAATTCAAAATTA
57858695 GATAAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 14 0.56
15 3 0.12
16 8 0.32
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (14 bp):
AAATTCAAAATTAA
Found at i:57858763 original size:31 final size:31
Alignment explanation
Indices: 57858724--57858792 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
57858714 AATTAAAAGG
* * *
57858724 TGAA-AGATCGATTGAATAAACAAATGGATA
1 TGAATAGATCAATCGAATAAACAAATAGATA
57858754 TGAATAGATCAATCGAATAAACAAATAGATA
1 TGAATAGATCAATCGAATAAACAAATAGATA
57858785 TGAATAGA
1 TGAATAGA
57858793 AGATAGTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.23
Consensus pattern (31 bp):
TGAATAGATCAATCGAATAAACAAATAGATA
Found at i:57863319 original size:18 final size:18
Alignment explanation
Indices: 57863298--57863363 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
57863288 TCCATCAGTT
57863298 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
57863316 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
57863334 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
*
57863352 CGAACATCATTT
1 TGAACATCATTT
57863364 CTCACATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:57865818 original size:12 final size:12
Alignment explanation
Indices: 57865801--57865825 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57865791 GAAGATGAGA
57865801 AGAACAAATCAG
1 AGAACAAATCAG
57865813 AGAACAAATCAG
1 AGAACAAATCAG
57865825 A
1 A
57865826 CAAGAAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.16, T:0.08
Consensus pattern (12 bp):
AGAACAAATCAG
Found at i:57870222 original size:20 final size:20
Alignment explanation
Indices: 57870194--57870241 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
57870184 GTCCAATTTT
*
57870194 TTATTTTTAAAAATAATTAA
1 TTATATTTAAAAATAATTAA
* * *
57870214 TTTTATTTAATACTAATTAA
1 TTATATTTAAAAATAATTAA
57870234 TTATATTT
1 TTATATTT
57870242 GACTACAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATATTTAAAAATAATTAA
Found at i:57870405 original size:23 final size:27
Alignment explanation
Indices: 57870356--57870408 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
57870346 TTATTGATAT
57870356 AAATAATATAATATATAAACCAAATGAA
1 AAATAATATAATATATAAACC-AATGAA
57870384 AAATAATAT-AT-TATAAA-C-ATGAA
1 AAATAATATAATATATAAACCAATGAA
57870407 AA
1 AA
57870409 CAAGTCAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 7 0.28
25 1 0.04
26 6 0.24
27 2 0.08
28 9 0.36
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (27 bp):
AAATAATATAATATATAAACCAATGAA
Found at i:57872866 original size:20 final size:21
Alignment explanation
Indices: 57872841--57872899 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
57872831 AAAAATATAA
57872841 ATTTTGGATTTTTTATAAA-T
1 ATTTTGGATTTTTTATAAATT
* * *
57872861 ATTTT-GAATTTTGAAAAATT
1 ATTTTGGATTTTTTATAAATT
*
57872881 ATTTTGAATTTTTTTATAA
1 ATTTTGGA-TTTTTTATAA
57872900 TTTTTGTTGA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 10 0.34
20 11 0.38
21 1 0.03
22 7 0.24
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTTTGGATTTTTTATAAATT
Found at i:57873695 original size:27 final size:27
Alignment explanation
Indices: 57873657--57873710 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
57873647 TGACAATTGG
*
57873657 CATTGTCACAACTTAAGCACGATGTAT
1 CATTGTCACAACTCAAGCACGATGTAT
57873684 CATTGTCACAACTCAAGCACGATGTAT
1 CATTGTCACAACTCAAGCACGATGTAT
57873711 TTAGAGTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (27 bp):
CATTGTCACAACTCAAGCACGATGTAT
Found at i:57878181 original size:48 final size:48
Alignment explanation
Indices: 57878129--57878225 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
57878119 TAAACTGTTA
57878129 GTTCTAGTGCTTATGACGATTCCGGATTTGTGGAATCACTCATTTTCT
1 GTTCTAGTGCTTATGACGATTCCGGATTTGTGGAATCACTCATTTTCT
57878177 GTTCTAGTGCTTATGACGATTCCGGATTTGTGGAATCACTCATTTTCT
1 GTTCTAGTGCTTATGACGATTCCGGATTTGTGGAATCACTCATTTTCT
57878225 G
1 G
57878226 CCTCATTCTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (48 bp):
GTTCTAGTGCTTATGACGATTCCGGATTTGTGGAATCACTCATTTTCT
Found at i:57888461 original size:12 final size:12
Alignment explanation
Indices: 57888444--57888510 Score: 50
Period size: 12 Copynumber: 5.5 Consensus size: 12
57888434 GTTTTTTAAA
57888444 AAAATAATATAT
1 AAAATAATATAT
*
57888456 AAAATAAAAAGTATGT
1 AAAAT---AA-TATAT
*
57888472 AAAATAATTTAT
1 AAAATAATATAT
57888484 AAAATAAT-TAT
1 AAAATAATATAT
*
57888495 ATAAT-ATATA-
1 AAAATAATATAT
57888505 AAAATA
1 AAAATA
57888511 TCAATTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.14
11 9 0.20
12 16 0.36
13 2 0.05
15 2 0.05
16 9 0.20
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (12 bp):
AAAATAATATAT
Found at i:57888628 original size:12 final size:12
Alignment explanation
Indices: 57888611--57888635 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57888601 TTTTAAAATT
57888611 ATGAATAATATA
1 ATGAATAATATA
57888623 ATGAATAATATA
1 ATGAATAATATA
57888635 A
1 A
57888636 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:57888692 original size:11 final size:11
Alignment explanation
Indices: 57888676--57888721 Score: 56
Period size: 11 Copynumber: 3.9 Consensus size: 11
57888666 TATACATAAC
57888676 ATATAATAAAA
1 ATATAATAAAA
*
57888687 AAATAATAAGTAA
1 ATATAATAA--AA
57888700 TATATAATAAAA
1 -ATATAATAAAA
57888712 ATATAATAAA
1 ATATAATAAA
57888722 TGTTATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 18 0.60
12 2 0.07
13 2 0.07
14 8 0.27
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:57888706 original size:25 final size:25
Alignment explanation
Indices: 57888671--57888755 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 25
57888661 TACGATATAC
*
57888671 ATAACATATAATAAAAAAATAATAA
1 ATAATATATAATAAAAAAATAATAA
* *
57888696 GTAATATATAATAAAAATATAATAA
1 ATAATATATAATAAAAAAATAATAA
**
57888721 ATGTTATATAATAAAATAAA-ATATAA
1 ATAATATATAATAAAA-AAATA-ATAA
57888747 AT-ATATATA
1 ATAATATATA
57888756 GGAAAATAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
25 42 0.84
26 8 0.16
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (25 bp):
ATAATATATAATAAAAAAATAATAA
Found at i:57895260 original size:17 final size:18
Alignment explanation
Indices: 57895226--57895261 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
57895216 TTAATTTTCC
*
57895226 CTTTTTCTTTTCTCATTT
1 CTTTTTCTTTCCTCATTT
57895244 CTTTTTCTTTCCT-ATTT
1 CTTTTTCTTTCCTCATTT
57895261 C
1 C
57895262 GTTCCACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (18 bp):
CTTTTTCTTTCCTCATTT
Found at i:57895370 original size:23 final size:23
Alignment explanation
Indices: 57895338--57895405 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 23
57895328 TACTTAATTA
*
57895338 ATAATTAATATAATATATTATAA-T
1 ATAATAAATAT-ATATATTA-AAGT
*
57895362 -TAATAAATATCTTATACTTAAAGT
1 ATAATAAATAT-ATATA-TTAAAGT
57895386 ATAAGTAAATATATATATTA
1 ATAA-TAAATATATATATTA
57895406 CATTTGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
23 15 0.42
24 7 0.19
25 7 0.19
26 7 0.19
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (23 bp):
ATAATAAATATATATATTAAAGT
Found at i:57895376 original size:18 final size:19
Alignment explanation
Indices: 57895338--57895382 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
57895328 TACTTAATTA
57895338 ATAATTAATATAATATATT
1 ATAATTAATATAATATATT
*
57895357 ATAATTAATA-AATATCTT
1 ATAATTAATATAATATATT
*
57895375 ATACTTAA
1 ATAATTAA
57895383 AGTATAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAATTAATATAATATATT
Found at i:57897017 original size:17 final size:16
Alignment explanation
Indices: 57896984--57897014 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57896974 GCGCTGAAAC
57896984 ATATTATGTCAAAAAG
1 ATATTATGTCAAAAAG
*
57897000 ATATTGTGTCAAAAA
1 ATATTATGTCAAAAA
57897015 AGAACAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.32
Consensus pattern (16 bp):
ATATTATGTCAAAAAG
Found at i:57899769 original size:17 final size:17
Alignment explanation
Indices: 57899747--57899807 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
57899737 ACAATAATAT
57899747 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
57899764 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
57899781 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
57899795 AAAATATATATAT
1 AAAATATATATAT
57899808 TAAATTCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:57900449 original size:24 final size:24
Alignment explanation
Indices: 57900421--57900466 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
57900411 TCAAAATGCA
*
57900421 ATTTTTATTTTTTAAAATTTTTTT
1 ATTTTTATTTTTTAAAAATTTTTT
57900445 ATTTTTATTTTTTAAAAATTTT
1 ATTTTTATTTTTTAAAAATTTT
57900467 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTAAAAATTTTTT
Found at i:57901738 original size:10 final size:11
Alignment explanation
Indices: 57901712--57901738 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
57901702 ACTATTAGTA
57901712 ATTTTTTAAAT
1 ATTTTTTAAAT
57901723 ATTTTTTAAAT
1 ATTTTTTAAAT
57901734 ATTTT
1 ATTTT
57901739 ACTATACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTTTTAAAT
Found at i:57904223 original size:14 final size:16
Alignment explanation
Indices: 57904199--57904230 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
57904189 TATTTAAAAG
57904199 ATAACATTAAAA-GAA
1 ATAACATTAAAATGAA
57904214 ATAA-ATTAAAATGAA
1 ATAACATTAAAATGAA
57904229 AT
1 AT
57904231 GAAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (16 bp):
ATAACATTAAAATGAA
Found at i:57914624 original size:19 final size:19
Alignment explanation
Indices: 57914582--57914623 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
57914572 CTAAAAATAT
* *
57914582 TAAAATAAATATTTATTAA
1 TAAAATAAAAATATATTAA
57914601 TAAAATAAAAATATATT-A
1 TAAAATAAAAATATATTAA
57914619 TAAAA
1 TAAAA
57914624 AAGTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAATAAAAATATATTAA
Found at i:57914750 original size:11 final size:11
Alignment explanation
Indices: 57914736--57914786 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
57914726 AAATAACAAC
57914736 AACAAAATAAT
1 AACAAAATAAT
*
57914747 AACAATATAAT
1 AACAAAATAAT
57914758 AACAAAATAAT
1 AACAAAATAAT
* * *
57914769 AGCAAAATGAC
1 AACAAAATAAT
57914780 AACAAAA
1 AACAAAA
57914787 CAACAGGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.69, C:0.12, G:0.04, T:0.16
Consensus pattern (11 bp):
AACAAAATAAT
Found at i:57914755 original size:36 final size:36
Alignment explanation
Indices: 57914697--57914767 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
57914687 TAATAAAATT
* ** * *
57914697 AACAATAAAATAAGAATTATATAATATCCAAATAAC
1 AACAACAAAATAAGAACAATATAATAACAAAATAAC
*
57914733 AACAACAAAATAATAACAATATAATAACAAAATAA
1 AACAACAAAATAAGAACAATATAATAACAAAATAA
57914768 TAGCAAAATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.66, C:0.11, G:0.01, T:0.21
Consensus pattern (36 bp):
AACAACAAAATAAGAACAATATAATAACAAAATAAC
Found at i:57920954 original size:17 final size:18
Alignment explanation
Indices: 57920932--57920975 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
57920922 TCAACAGTTG
57920932 TATTTA-AAAAATAATTA
1 TATTTATAAAAATAATTA
* *
57920949 TATTTATCAAAATAATTG
1 TATTTATAAAAATAATTA
57920967 TATTTATAA
1 TATTTATAA
57920976 TGCATCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
TATTTATAAAAATAATTA
Found at i:57921688 original size:33 final size:33
Alignment explanation
Indices: 57921646--57921711 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
57921636 AAAATAAGTT
57921646 TAAAAATATAAAATCTTCAATTAGTTATGAAAA
1 TAAAAATATAAAATCTTCAATTAGTTATGAAAA
*
57921679 TAAAAATATAAAATCTTCTATTAGTTATGAAAA
1 TAAAAATATAAAATCTTCAATTAGTTATGAAAA
57921712 ATTAGTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (33 bp):
TAAAAATATAAAATCTTCAATTAGTTATGAAAA
Found at i:57921911 original size:31 final size:31
Alignment explanation
Indices: 57921849--57921913 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
57921839 TCTAATAGTG
* *
57921849 ACTTAAATAAAAATTTCTGAATAATTTAATA
1 ACTTAAATAAAAATTTCTAAATAATTCAATA
* *
57921880 ACTTAAATGAAAACTTTC-AAATAGTTCAATA
1 ACTTAAAT-AAAAATTTCTAAATAATTCAATA
57921911 ACT
1 ACT
57921914 ATTTTATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 21 0.72
32 8 0.28
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (31 bp):
ACTTAAATAAAAATTTCTAAATAATTCAATA
Found at i:57937860 original size:13 final size:13
Alignment explanation
Indices: 57937844--57937876 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
57937834 CAATGCTTTT
57937844 GAAAAGTGCTATA
1 GAAAAGTGCTATA
*
57937857 GAAAAGTGCTATT
1 GAAAAGTGCTATA
57937870 GAAAAGT
1 GAAAAGT
57937877 TTGGTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (13 bp):
GAAAAGTGCTATA
Found at i:57943443 original size:22 final size:23
Alignment explanation
Indices: 57943386--57943443 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
57943376 GTGATTATAT
* *
57943386 TTTATTTCTATTTCCACAGGGTAG
1 TTTAGTTCTA-TTCCACAAGGTAG
*
57943410 GTTAGTTC-ATTCCACAAGGTAG
1 TTTAGTTCTATTCCACAAGGTAG
57943432 TTTA-TTCTATTC
1 TTTAGTTCTATTC
57943444 TGTGACTGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.10
22 19 0.66
23 1 0.03
24 6 0.21
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (23 bp):
TTTAGTTCTATTCCACAAGGTAG
Found at i:57947642 original size:19 final size:19
Alignment explanation
Indices: 57947591--57947661 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
57947581 AAAATTACAA
* * *
57947591 AAAAATCAAAGTAATTTTC
1 AAAATTCAAAATAATTTTT
*
57947610 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
57947630 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
57947648 AGAAATTCTAAAAT
1 A-AAATTC-AAAAT
57947662 TTATATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 6 0.14
19 17 0.40
20 20 0.47
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:57947663 original size:18 final size:19
Alignment explanation
Indices: 57947618--57947666 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
57947608 TCAAAATTTG
*
57947618 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
57947637 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
*
57947656 TAAA-ATTTATA
1 AAAATATTTATA
57947667 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:57947690 original size:19 final size:18
Alignment explanation
Indices: 57947657--57947703 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
57947647 TAGAAATTCT
*
57947657 AAAATTTATATTTTTTAA
1 AAAATTTAAATTTTTTAA
57947675 AAAATTATAAATTTTTTAA
1 AAAATT-TAAATTTTTTAA
*
57947694 AAAATCTAAA
1 AAAATTTAAA
57947704 AAAATATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AAAATTTAAATTTTTTAA
Found at i:57947703 original size:18 final size:19
Alignment explanation
Indices: 57947657--57947698 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
57947647 TAGAAATTCT
*
57947657 AAAATT-TATATTTTTTAA
1 AAAATTATAAATTTTTTAA
57947675 AAAATTATAAATTTTTTAA
1 AAAATTATAAATTTTTTAA
57947694 AAAAT
1 AAAAT
57947699 CTAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAATTATAAATTTTTTAA
Found at i:57947715 original size:20 final size:20
Alignment explanation
Indices: 57947692--57947729 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57947682 TAAATTTTTT
57947692 AAAAAATCTAAAAAAATATA
1 AAAAAATCTAAAAAAATATA
* *
57947712 AAAAAATTTAATAAAATA
1 AAAAAATCTAAAAAAATA
57947730 ATAATTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAAATCTAAAAAAATATA
Found at i:57948052 original size:21 final size:21
Alignment explanation
Indices: 57948028--57948069 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
57948018 TTACCTTTTC
57948028 TAAAGTTAAAA-GTCAAAACTA
1 TAAAGTTAAAAGGT-AAAACTA
57948049 TAAAGTTAAAAGGTAAAACTA
1 TAAAGTTAAAAGGTAAAACTA
57948070 CTTTGTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.24
Consensus pattern (21 bp):
TAAAGTTAAAAGGTAAAACTA
Found at i:57949546 original size:21 final size:21
Alignment explanation
Indices: 57949522--57949573 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
57949512 AGACAGGGAC
57949522 ACACGCCCGTGTGGAAGGGTT
1 ACACGCCCGTGTGGAAGGGTT
**
57949543 ACACGCTGGTGTGGAAGGGTT
1 ACACGCCCGTGTGGAAGGGTT
57949564 ACACGCCCGT
1 ACACGCCCGT
57949574 ATGTCTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.25, G:0.37, T:0.19
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGTT
Found at i:57950840 original size:48 final size:48
Alignment explanation
Indices: 57950769--57951052 Score: 216
Period size: 48 Copynumber: 5.9 Consensus size: 48
57950759 AGGGTAAATT
* *
57950769 GCCGATG-CATGTCCCAGATATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* * *** ** * *
57950816 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTTTTAACTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
** * * * * * *
57950864 ATCGATGCCATGTCCCAGTCATGATCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-GTCGAG
* * * * *
57950912 GTCGATGCCATATCTCAGACATGGTCTTACACTAG-TACACATGTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATGTCGAG
* * * * * * * *
57950960 ACCGATGCCATCTCCCAGACAAGGTCTTAAACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-GTCGAG
*
57951008 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTC
57951053 ACCTAAATAC
Statistics
Matches: 174, Mismatches: 56, Indels: 13
0.72 0.23 0.05
Matches are distributed among these distances:
47 10 0.06
48 161 0.93
49 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
Found at i:57951050 original size:96 final size:96
Alignment explanation
Indices: 57950770--57951053 Score: 356
Period size: 96 Copynumber: 3.0 Consensus size: 96
57950760 GGGTAAATTG
* * * *
57950770 CCGATG-CATGTCCCAGATATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATATCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATATCCCA
* **** **
57950833 AACATGGTCTTACACTAGCTTTTAACTCAATA
65 GACATGGTCTTACACTAGCACACATGTCAATA
* * * * *
57950865 TCGATGCCATGTCCCAGTCATGATCTTACACTGGCTCTCATAATGTGGTCGATGCCATATCTCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATATCCCAG
*
57950930 ACATGGTCTTACACTAGTACACATGTCAATA
66 ACATGGTCTTACACTAGCACACATGTCAATA
* * * *
57950961 CCGATGCCATCTCCCAGACAAGGTCTTAAACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATATCCCAG
57951026 ACATGGTCTTACACTAGCACACATGTCA
66 ACATGGTCTTACACTAGCACACATGTCA
57951054 CCTAAATACC
Statistics
Matches: 160, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
95 5 0.03
96 154 0.96
97 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATATCCCAG
ACATGGTCTTACACTAGCACACATGTCAATA
Found at i:57951646 original size:30 final size:30
Alignment explanation
Indices: 57951610--57951666 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
57951600 ACCAAGATTC
57951610 ATTTTCTTCCATAAAAATTCAGCAAAATTT
1 ATTTTCTTCCATAAAAATTCAGCAAAATTT
57951640 ATTTTCTTCCATAAAAATTCAGCAAAA
1 ATTTTCTTCCATAAAAATTCAGCAAAA
57951667 AACATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.37
Consensus pattern (30 bp):
ATTTTCTTCCATAAAAATTCAGCAAAATTT
Found at i:57953380 original size:41 final size:40
Alignment explanation
Indices: 57953309--57953387 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 40
57953299 TGTCGTAACT
**
57953309 TATGGTGTGTAGGGATGGATGGGTCAATTTTATTCCCCATA
1 TATGGTGTGTAGGGATGGATAAGTCAATTTTA-TCCCCATA
*
57953350 TATGGTGTGTAGGGATTGG-TAAGTCGATTTTATCCCCA
1 TATGGTGTGTAGGGA-TGGATAAGTCAATTTTATCCCCA
57953388 CATGGTGTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 6 0.18
41 25 0.74
42 3 0.09
ACGTcount: A:0.22, C:0.13, G:0.29, T:0.37
Consensus pattern (40 bp):
TATGGTGTGTAGGGATGGATAAGTCAATTTTATCCCCATA
Found at i:57962535 original size:22 final size:22
Alignment explanation
Indices: 57962510--57962554 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
57962500 AGCTCTAAAA
57962510 CCCATAAAATGTCTAAAATTTT
1 CCCATAAAATGTCTAAAATTTT
57962532 CCCATAAAATGTCTAAAATTTT
1 CCCATAAAATGTCTAAAATTTT
57962554 C
1 C
57962555 GGTGGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.20, G:0.04, T:0.36
Consensus pattern (22 bp):
CCCATAAAATGTCTAAAATTTT
Found at i:57967298 original size:17 final size:18
Alignment explanation
Indices: 57967276--57967314 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
57967266 TAATTTTTAA
*
57967276 AAAAATAATAATAA-ATT
1 AAAAATAATAAAAACATT
*
57967293 AAAAATACTAAAAACATT
1 AAAAATAATAAAAACATT
57967311 AAAA
1 AAAA
57967315 TAAATGTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATAATAAAAACATT
Found at i:57967438 original size:17 final size:18
Alignment explanation
Indices: 57967412--57967446 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
57967402 CTAAAATAGT
57967412 AACAAAATTA-ACAATAA
1 AACAAAATTATACAATAA
*
57967429 AACAAGATTATACAATAA
1 AACAAAATTATACAATAA
57967447 CTAAACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (18 bp):
AACAAAATTATACAATAA
Found at i:57972153 original size:23 final size:23
Alignment explanation
Indices: 57972107--57972163 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
57972097 TTGTATAAGT
* *
57972107 AAATAATAATTATTATTAAATATA
1 AAATAATAA-TATAACTAAATATA
*
57972131 ATATAATAATATAACTAAATATA
1 AAATAATAATATAACTAAATATA
57972154 AAATAA-AATA
1 AAATAATAATA
57972164 AAAAGAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 4 0.14
23 17 0.59
24 8 0.28
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
AAATAATAATATAACTAAATATA
Found at i:57973122 original size:6 final size:6
Alignment explanation
Indices: 57973090--57973128 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
57973080 TGTGTACCGC
* * *
57973090 TACTGC TACTGC TACTGT TACTGT TACTAT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
57973129 GGTGTATTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:57976748 original size:111 final size:111
Alignment explanation
Indices: 57976554--57976775 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
57976544 CGGATTTATT
57976554 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
1 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
57976619 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
66 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
57976665 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
1 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
57976730 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
66 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
57976776 GAACTGAAAG
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (111 bp):
CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
Found at i:57988502 original size:4 final size:4
Alignment explanation
Indices: 57988495--57988572 Score: 156
Period size: 4 Copynumber: 19.5 Consensus size: 4
57988485 CTTAAAAAAA
57988495 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
57988543 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
57988573 GTTGGTGGTA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:57989426 original size:30 final size:30
Alignment explanation
Indices: 57989370--57989426 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
57989360 AGGCACTTCT
*
57989370 ACACGGGTGATCCACACGCTCGTGTGTGAC
1 ACACGGGTGATCCACACGCCCGTGTGTGAC
*
57989400 ACACGGGTAGA-CCACACGCCCTTGTGT
1 ACACGGGT-GATCCACACGCCCGTGTGT
57989427 CATGGCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (30 bp):
ACACGGGTGATCCACACGCCCGTGTGTGAC
Found at i:57994810 original size:22 final size:22
Alignment explanation
Indices: 57994769--57994812 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
57994759 TTCTTCTAAA
57994769 ATTATTTAAAATAATATAAAAT
1 ATTATTTAAAATAATATAAAAT
57994791 ATTATATTAATAA-AAT-TAAAAT
1 ATTAT-TTAA-AATAATATAAAAT
57994813 TAAAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 7 0.35
24 2 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTATTTAAAATAATATAAAAT
Found at i:57997965 original size:55 final size:55
Alignment explanation
Indices: 57997881--57997997 Score: 207
Period size: 55 Copynumber: 2.1 Consensus size: 55
57997871 GTTGTTTCTT
57997881 TTATACCATTCTTAAATTACTCATTAATCTTCATGAATTTTTAAATAAAAAATAA
1 TTATACCATTCTTAAATTACTCATTAATCTTCATGAATTTTTAAATAAAAAATAA
* *
57997936 TTATATCATTCTTAAATTACTCATTAATCTTCATGAATTTTTAAATAAAAGATAA
1 TTATACCATTCTTAAATTACTCATTAATCTTCATGAATTTTTAAATAAAAAATAA
57997991 TATATAC
1 T-TATAC
57997998 TTAAACACGT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
55 54 0.93
56 4 0.07
ACGTcount: A:0.43, C:0.12, G:0.03, T:0.43
Consensus pattern (55 bp):
TTATACCATTCTTAAATTACTCATTAATCTTCATGAATTTTTAAATAAAAAATAA
Found at i:57997980 original size:29 final size:29
Alignment explanation
Indices: 57997892--57997981 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
57997882 TATACCATTC
57997892 TTAAATTACTCATTAATCTTCATGAATTT
1 TTAAATTACTCATTAATCTTCATGAATTT
*** * * *
57997921 TTAAA-TAAAAAATAAT-TAT-AT-CATTC
1 TTAAATTACTCATTAATCT-TCATGAATTT
57997947 TTAAATTACTCATTAATCTTCATGAATTT
1 TTAAATTACTCATTAATCTTCATGAATTT
57997976 TTAAAT
1 TTAAAT
57997982 AAAAGATAAT
Statistics
Matches: 44, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
26 8 0.18
27 11 0.25
28 11 0.25
29 14 0.32
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46
Consensus pattern (29 bp):
TTAAATTACTCATTAATCTTCATGAATTT
Found at i:58013469 original size:155 final size:153
Alignment explanation
Indices: 58013244--58013542 Score: 365
Period size: 153 Copynumber: 1.9 Consensus size: 153
58013234 TGAAAGTTTA
* * * *
58013244 TCATCTTTATGCAGACGTTGATGTTGTCAAGCCTTCTTCCATCTTCCATCTGACCATGGTTGATC
1 TCATCTTTATGCAGACATTAATGATGTCAAGCCTTCTCCCATCTTCCATCTGACCATGGTTGATC
**
58013309 ACGGATTTTCCGCA-CTCAATG-GCACACATCCATCAGTTCATGAG-ACATGCATTCAGCTCAGC
66 ACGGA-TTT--G-ATCTCAATGAGCACACATCCATCAGTTCATG-GTACATGCATTCAGCAAAGC
58013371 CTCAGCACATATTTGTTGTGAATTTTTT
126 CTCAGCACATATTTGTTGTGAATTTTTT
* *
58013399 TCATCTTTATGCA-ACCATTAATGATGTCGATCCTTCTCCCA-CTTCCAGTCTGACCATGGTTGA
1 TCATCTTTATGCAGA-CATTAATGATGTCAAGCCTTCTCCCATCTTCCA-TCTGACCATGGTTGA
** * ** * *
58013462 TTGCGGATTTGATTTCCCTGAGCACATATCCATCATTTCATGGTACATGCATTCAGCAAAGCCTC
64 TCACGGATTTGATCTCAATGAGCACACATCCATCAGTTCATGGTACATGCATTCAGCAAAGCCTC
58013527 AGCACATATTTGTTGT
129 AGCACATATTTGTTGT
58013543 CAATAACTTT
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
151 1 0.01
152 6 0.05
153 54 0.44
154 10 0.08
155 53 0.43
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (153 bp):
TCATCTTTATGCAGACATTAATGATGTCAAGCCTTCTCCCATCTTCCATCTGACCATGGTTGATC
ACGGATTTGATCTCAATGAGCACACATCCATCAGTTCATGGTACATGCATTCAGCAAAGCCTCAG
CACATATTTGTTGTGAATTTTTT
Found at i:58019785 original size:31 final size:31
Alignment explanation
Indices: 58019750--58019815 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
58019740 AAAATTACTT
58019750 AATAACCCAATGACTTAAATAAAAACTTTCA
1 AATAACCCAATGACTTAAATAAAAACTTTCA
** * * *
58019781 AATAATTCACTGGCTTAAATGAAAACTTTCA
1 AATAACCCAATGACTTAAATAAAAACTTTCA
58019812 AATA
1 AATA
58019816 GTTCAATGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (31 bp):
AATAACCCAATGACTTAAATAAAAACTTTCA
Found at i:58020284 original size:20 final size:20
Alignment explanation
Indices: 58020256--58020294 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
58020246 AACAAAAAAT
*
58020256 TAAATTAAA-ATGAAATAGAA
1 TAAAATAAAGATG-AATAGAA
58020276 TAAAATAAAGATGAATAGA
1 TAAAATAAAGATGAATAGA
58020295 TCTAATATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (20 bp):
TAAAATAAAGATGAATAGAA
Found at i:58026216 original size:38 final size:37
Alignment explanation
Indices: 58026132--58026204 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
58026122 GTAAAAAAAG
58026132 AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGCA
1 AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGCA
*
58026169 AAAGAAAAGAGAATTTTTTATTGATGTAGACAGTGC
1 AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGC
58026205 GAATGGAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.29
Consensus pattern (37 bp):
AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGCA
Found at i:58026855 original size:19 final size:20
Alignment explanation
Indices: 58026815--58026853 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
58026805 AAGGAGTATG
*
58026815 TTCTGAAATGGAAAAAAAAA
1 TTCTGAAATAGAAAAAAAAA
58026835 TTCTGAAATAGAAAAAAAA
1 TTCTGAAATAGAAAAAAAA
58026854 TTTGGAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.62, C:0.05, G:0.13, T:0.21
Consensus pattern (20 bp):
TTCTGAAATAGAAAAAAAAA
Found at i:58028396 original size:3 final size:3
Alignment explanation
Indices: 58028388--58028423 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
58028378 AAATAGATAT
*
58028388 TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
58028424 GAAATAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:58028566 original size:33 final size:33
Alignment explanation
Indices: 58028499--58028567 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
58028489 ACACTTGTAA
*
58028499 AAATATATATATAATTACTTAAAATTTAAGTAT
1 AAATATATATATAATTACTTAAAATTTAAATAT
*
58028532 AAATATATTTATAATTA-TTAATTAA-TTAAATAT
1 AAATATATATATAATTACTTAA--AATTTAAATAT
58028565 AAA
1 AAA
58028568 ATAAATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 4 0.12
33 26 0.81
34 2 0.06
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (33 bp):
AAATATATATATAATTACTTAAAATTTAAATAT
Found at i:58029198 original size:17 final size:18
Alignment explanation
Indices: 58029176--58029209 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
58029166 TAAATGAGTT
58029176 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
58029193 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
58029210 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:58031182 original size:17 final size:17
Alignment explanation
Indices: 58031145--58031182 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
58031135 TTATTTTTAT
*
58031145 TATTATTATCGTATTAC
1 TATTATTATCATATTAC
58031162 TATTATTATCATCATTA-
1 TATTATTATCAT-ATTAC
58031179 TATT
1 TATT
58031183 GTTTCTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.55
Consensus pattern (17 bp):
TATTATTATCATATTAC
Found at i:58032758 original size:21 final size:21
Alignment explanation
Indices: 58032734--58032786 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
58032724 TATATGTGTT
*
58032734 GTATCAGGTACCTCGTGTATC
1 GTATCAGGCACCTCGTGTATC
*
58032755 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTATC
* *
58032776 GTTTTAGGCAC
1 GTATCAGGCAC
58032787 TTTATGTGTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.17, C:0.25, G:0.26, T:0.32
Consensus pattern (21 bp):
GTATCAGGCACCTCGTGTATC
Found at i:58038280 original size:112 final size:113
Alignment explanation
Indices: 58038079--58038309 Score: 367
Period size: 112 Copynumber: 2.0 Consensus size: 113
58038069 AAATATAAAA
* * **
58038079 TTTTGGGGTCAAAGTTAAAATGCTTAAATTAAATTAGTACTTTTTTGAGGGGCCAAATTAAAAAA
1 TTTTGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAAAGGGGCCAAATTAAAAAA
* * *
58038144 AATCATTTGACCGACGTTTAAAAAAGG-TTAAATTG-ATTTTTTTTAAG
66 AATCATTTGACCAAAGTCTAAAAAAGGCTT-AATTGAATTTTTTTTAAG
58038191 TTTTGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAAAGGGGCCACAATTAAAAA
1 TTTTGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAAAGGGGCCA-AATTAAAAA
58038256 AAATCATTTGACCAAAGTCTAAAAAAGGCTTAATTGAATTTTTTTTAAG
65 AAATCATTTGACCAAAGTCTAAAAAAGGCTTAATTGAATTTTTTTTAAG
58038305 TTTTG
1 TTTTG
58038310 AGAGGGGCTA
Statistics
Matches: 109, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
112 51 0.47
113 39 0.36
114 19 0.17
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (113 bp):
TTTTGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAAAGGGGCCAAATTAAAAAA
AATCATTTGACCAAAGTCTAAAAAAGGCTTAATTGAATTTTTTTTAAG
Found at i:58039656 original size:19 final size:19
Alignment explanation
Indices: 58039629--58039679 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 19
58039619 AAAGTTTTAT
* *
58039629 TTTAATATTTTTCATAAGC
1 TTTACTATTTTTCACAAGC
*
58039648 TTTACTATTATTACACAAGC
1 TTTACTATT-TTTCACAAGC
*
58039668 TTTTCT-TTTTTC
1 TTTACTATTTTTC
58039680 TTTAACTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 3 0.12
19 10 0.38
20 13 0.50
ACGTcount: A:0.25, C:0.16, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTACTATTTTTCACAAGC
Found at i:58041489 original size:11 final size:11
Alignment explanation
Indices: 58041473--58041523 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
58041463 ATACGAAAAT
58041473 ATAAAAAGAAA
1 ATAAAAAGAAA
58041484 ATAAAAAGAAA
1 ATAAAAAGAAA
* *
58041495 ACAAATAAAAAGA
1 ATAAA-AAGAA-A
*
58041508 AAAAAAAGAAA
1 ATAAAAAGAAA
58041519 A-AAAA
1 ATAAAA
58041524 TTAGAGTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 4 0.12
11 17 0.50
12 8 0.24
13 5 0.15
ACGTcount: A:0.84, C:0.02, G:0.08, T:0.06
Consensus pattern (11 bp):
ATAAAAAGAAA
Found at i:58041502 original size:15 final size:15
Alignment explanation
Indices: 58041476--58041520 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
58041466 CGAAAATATA
58041476 AAAAGAAAATAAAAAG
1 AAAA-AAAATAAAAAG
*
58041492 AAAACAAATAAAAAG
1 AAAAAAAATAAAAAG
*
58041507 AAAAAAAAGAAAAA
1 AAAAAAAATAAAAA
58041521 AAATTAGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.84, C:0.02, G:0.09, T:0.04
Consensus pattern (15 bp):
AAAAAAAATAAAAAG
Found at i:58041503 original size:26 final size:24
Alignment explanation
Indices: 58041468--58041524 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
58041458 TATATATACG
*
58041468 AAAATATAAAAAGAAAATAAAAAGAA
1 AAAAAATAAAAAG-AAA-AAAAAGAA
*
58041494 AACAAATAAAAAGAAAAAAAAGAA
1 AAAAAATAAAAAGAAAAAAAAGAA
58041518 AAAAAAT
1 AAAAAAT
58041525 TAGAGTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 14 0.50
25 3 0.11
26 11 0.39
ACGTcount: A:0.82, C:0.02, G:0.07, T:0.09
Consensus pattern (24 bp):
AAAAAATAAAAAGAAAAAAAAGAA
Found at i:58042388 original size:27 final size:28
Alignment explanation
Indices: 58042332--58042388 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
58042322 TGCATTTTTC
58042332 ATATTAATATATATATGCTTTTAATATT
1 ATATTAATATATATATGCTTTTAATATT
* *
58042360 ATATTATTATGTATATG-TTTTAATATT
1 ATATTAATATATATATGCTTTTAATATT
58042387 AT
1 AT
58042389 TAGCTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (28 bp):
ATATTAATATATATATGCTTTTAATATT
Found at i:58042563 original size:21 final size:21
Alignment explanation
Indices: 58042522--58042563 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
58042512 TCTAATATAA
* *
58042522 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
58042543 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
58042564 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:58046339 original size:11 final size:11
Alignment explanation
Indices: 58046323--58046347 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
58046313 TATTATGCCT
58046323 AAAAAAAACAA
1 AAAAAAAACAA
58046334 AAAAAAAACAA
1 AAAAAAAACAA
58046345 AAA
1 AAA
58046348 GGGTGATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:58047494 original size:159 final size:159
Alignment explanation
Indices: 58047200--58047610 Score: 700
Period size: 159 Copynumber: 2.6 Consensus size: 159
58047190 TCATTTCTGT
*
58047200 GAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAAC
1 GAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAAC
*
58047265 TCATATTGCGAAAGGTGAGTTGAGCGTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTTTTA
66 TCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTTTTA
58047330 TGTCTGTTTTCTAAATCAACTCATATTGC
131 TGTCTGTTTTCTAAATCAACTCATATTGC
58047359 GAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAAC
1 GAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAAC
58047424 TCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTTTTA
66 TCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTTTTA
58047489 TGTCTGTTTTCTAAATCAACTCATATTGC
131 TGTCTGTTTTCTAAATCAACTCATATTGC
* * * * *
58047518 GAGAGGTAAGTTGAGCCTCGAGGTACGCTGAGGTATTTTCAATTATT-T-TTTGTCAAAAAAATC
1 GAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA--ATTCTACTT-TCAAAAAAATC
* *
58047581 AACTCATATTGCTAGAGGTGAGTTGAGCCT
63 AACTCATATTGCGAAAGGTGAGTTGAGCCT
58047611 CGGGGCACGC
Statistics
Matches: 240, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
159 197 0.82
160 40 0.17
161 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (159 bp):
GAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAAC
TCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTTTTA
TGTCTGTTTTCTAAATCAACTCATATTGC
Found at i:58047613 original size:234 final size:231
Alignment explanation
Indices: 58047342--58047864 Score: 678
Period size: 234 Copynumber: 2.2 Consensus size: 231
58047332 TCTGTTTTCT
*
58047342 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATT-CT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-AATTACT
* * * *
58047406 ACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTCACGTGTTGA-GTC
65 -CTTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGG---ACATGCTGAGGT-
* *
58047469 ACTTTCAATTTCTGTTTTT-ATGTCTGTTTTC-TAAATCAACTCATATTGCGAGAGGTAAGTTGA
125 ACTTTCAATTTCTGTTTTTAATGTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGA
* * * *
58047532 GCCTCGAGGTACGCTGAGGTATTTTCAATTATTTTTTGTCAAAA
190 GCCTCGAGGCACGCTGAGGTATTTTCAATTACTGTTTGGC--AA
* *
58047576 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTC
*** * * *
58047641 TTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTTAGCCTCAGGACATGCTGAGGTATTTTC
66 TTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACATGCTGAGGTACTTTC
* * *
58047706 GATTTCTGTTTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
131 AATTTCTGTTTTT-AATGTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC
*
58047771 GGGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAA
195 GAGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAA
* * * * *
58047808 AGATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC
58047865 GATTTCTGTT
Statistics
Matches: 254, Mismatches: 29, Indels: 14
0.86 0.10 0.05
Matches are distributed among these distances:
231 24 0.09
232 55 0.22
233 51 0.20
234 124 0.49
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (231 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTC
TTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACATGCTGAGGTACTTTC
AATTTCTGTTTTTAATGTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCG
AGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAA
Found at i:58047696 original size:73 final size:73
Alignment explanation
Indices: 58047501--58047875 Score: 387
Period size: 73 Copynumber: 4.9 Consensus size: 73
58047491 TCTGTTTTCT
* *
58047501 AAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGAGGTAC-GCTGAGGTATTTTCAATTATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGG-ACAGCTGAGGTATTTTCAATTACT
* *
58047565 TTTTGTCAAAA
64 GTTTGGC-AAA
* * *
58047576 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
58047641 TTTGGC-AA
65 TTTGGCAAA
* * * *
58047649 AAATCAACTCATACTGCGAGAGGTGAGTTTAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
**
58047714 TTTTTCAATTTATGTTTTCAA
65 TTTGGC-----A-------AA
* *
58047735 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
58047800 TTTGGC-AA
65 TTTGGCAAA
* * * *
58047808 AGATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
58047873 TTT
65 TTT
58047876 TTCAATTTAT
Statistics
Matches: 252, Mismatches: 33, Indels: 32
0.79 0.10 0.10
Matches are distributed among these distances:
73 127 0.50
74 2 0.01
75 59 0.23
86 64 0.25
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTCAATTACTGT
TTGGCAAA
Found at i:58047757 original size:159 final size:162
Alignment explanation
Indices: 58047574--58048232 Score: 694
Period size: 159 Copynumber: 4.0 Consensus size: 162
58047564 TTTTTGTCAA
*
58047574 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGG-GGCACGCTGAGGTATTTTCAA-TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTGGCACGCTGAGGTATTTTCAAGTT
*
58047637 ACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTTAGCCTCAGGACATGCTGAGGTAT
66 ACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
*
58047702 TTTCGATTTCTGTTTTTCAATTTATG-TTTTC
131 TTTCAATTTCTGTTTTTCAATTTATGCTTTTC
58047733 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GGCACGCTGAGGTATTTTCAA-TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTGGCACGCTGAGGTATTTTCAAGTT
*
58047796 ACTGTTTGGCAAAGATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
66 ACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
*
58047861 TTTCGATTTCTGTTTTTCAATTTATG-TTTTC
131 TTTCAATTTCTGTTTTTCAATTTATGCTTTTC
* * * * * * *
58047892 AAAAATCAA-TGCATATTGCTAAAGGTGAATTGAGTCTCAGGTCGTATAGC-GAGGTATTTTCAA
1 AAAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTC-GGTGGCA-CGCTGAGGTATTTTCAA
* * * * * * * * *
58047955 TTTA-TGTTT-TCAAAAATTAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATACGCCGA
63 GTTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACAT--GCTGA
** * * *
58048018 GGTATTTTCAATAGACGTTTTTTTTCAATTTCTGCTTCTC
126 GGTATTTTCAAT-TTC--TGTTTTTCAATTTATGCTTTTC
* * * **
58048058 AAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TGGCACGCTGAGGTATTTTCA
*** * * * *
58048123 AGTT-CTGCTTTTTAAAAAAAAAACAATTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCGCA
62 AGTTACTG---TTT-GGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
* *
58048186 CGCTGAGGTATTTTCAATTTTTCGTTTTTCAATTTATGCTTTTC
120 TGCTGAGGTATTTTCAATTTCT-GTTTTTCAATTTATGCTTTTC
58048230 AAA
1 AAA
58048233 TTCTACTTTC
Statistics
Matches: 421, Mismatches: 52, Indels: 44
0.81 0.10 0.09
Matches are distributed among these distances:
158 1 0.00
159 188 0.45
160 41 0.10
161 20 0.05
162 20 0.05
163 1 0.00
165 14 0.03
166 4 0.01
168 4 0.01
169 51 0.12
170 1 0.00
171 1 0.00
172 21 0.05
173 2 0.00
174 50 0.12
176 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (162 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTGGCACGCTGAGGTATTTTCAAGTT
ACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
TTTCAATTTCTGTTTTTCAATTTATGCTTTTC
Found at i:58047782 original size:86 final size:87
Alignment explanation
Indices: 58047628--58047802 Score: 255
Period size: 86 Copynumber: 2.0 Consensus size: 87
58047618 CGCTGAGGTA
* *
58047628 TTTTCAATTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTTAGCCTCAGGACATG
1 TTTTCAATTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
58047693 CTGAGGTATTTTCGATTTCTGT
66 CTGAGGTATTTTCAATTACTGT
* * * *
58047715 TTTTCAATTTA-TGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAA-TTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACAC
58047778 GCTGAGGTATTTTCAATTACTGT
65 GCTGAGGTATTTTCAATTACTGT
58047801 TT
1 TT
58047803 GGCAAAGATC
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
86 64 0.81
87 12 0.15
88 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (87 bp):
TTTTCAATTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATTTTCAATTACTGT
Found at i:58047995 original size:74 final size:74
Alignment explanation
Indices: 58047874--58048029 Score: 244
Period size: 74 Copynumber: 2.1 Consensus size: 74
58047864 CGATTTCTGT
*
58047874 TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGTCTCAGGTCGTAT
1 TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGCCTCAGGTC--AT
58047939 A-G-CGAGGTA
64 ACGCCGAGGTA
* * *
58047948 TTTTCAATTTATGTTTTCAAAAATTAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATAC
1 TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGCCTCAGGTCATAC
58048013 GCCGAGGTA
66 GCCGAGGTA
58048022 TTTTCAAT
1 TTTTCAAT
58048030 AGACGTTTTT
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
72 3 0.04
73 1 0.01
74 72 0.95
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (74 bp):
TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGCCTCAGGTCATAC
GCCGAGGTA
Found at i:58048169 original size:79 final size:78
Alignment explanation
Indices: 58048039--58048202 Score: 229
Period size: 79 Copynumber: 2.1 Consensus size: 78
58048029 TAGACGTTTT
* * ** * * *
58048039 TTTTCAATTTCTGCTTCTCAAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTT
1 TTTTCAAGTTCTGCTTCTAAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTC
58048104 ACACGCTGAGGTA
66 ACACGCTGAGGTA
* *
58048117 TTTTCAAGTTCTGCTTTTTAAAAAAAAAACAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT
1 TTTTCAAGTTCTGC-TTCTAAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT
*
58048182 CGCACGCTGAGGTA
65 CACACGCTGAGGTA
58048196 TTTTCAA
1 TTTTCAA
58048203 TTTTTCGTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
78 13 0.17
79 62 0.83
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (78 bp):
TTTTCAAGTTCTGCTTCTAAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTC
ACACGCTGAGGTA
Found at i:58048392 original size:89 final size:90
Alignment explanation
Indices: 58048222--58048392 Score: 236
Period size: 89 Copynumber: 1.9 Consensus size: 90
58048212 TTTCAATTTA
* * * * *
58048222 TGCTTTTCAAATTCTACTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGT
1 TGCTTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCT
* * *
58048287 CATATGTTGAGGTATTTTCAAAATC
66 CACATGCTGAGCTATTTTCAAAATC
* *
58048312 TGCTTTTCAAATT-AAGTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGTCTTAGCT
1 TGCTTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCT
*
58048376 CACGTGCTGAGCTATTT
66 CACATGCTGAGCTATTT
58048393 CTGTTTTAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
89 57 0.81
90 13 0.19
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (90 bp):
TGCTTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCT
CACATGCTGAGCTATTTTCAAAATC
Found at i:58061036 original size:13 final size:13
Alignment explanation
Indices: 58061009--58061041 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58060999 TGTATTTTCA
58061009 TATTAT-TATTAT
1 TATTATATATTAT
*
58061021 TATTATATATTTT
1 TATTATATATTAT
58061034 TATTATAT
1 TATTATAT
58061042 GCACATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTATATATTAT
Found at i:58067963 original size:26 final size:26
Alignment explanation
Indices: 58067858--58067949 Score: 166
Period size: 26 Copynumber: 3.5 Consensus size: 26
58067848 TGATACAAAT
*
58067858 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
58067884 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
58067910 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
58067936 TGATAATGGGTTAG
1 TGATAATGGGTTAG
58067950 ATAAGAATTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:58070900 original size:20 final size:22
Alignment explanation
Indices: 58070858--58070903 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
58070848 AAGTAGTATA
* *
58070858 TATATATTTTGACTATTTCATG
1 TATATATTTCGAATATTTCATG
58070880 TATATATTTCGAATA-TT-ATG
1 TATATATTTCGAATATTTCATG
58070900 TATA
1 TATA
58070904 GTATATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 13 0.59
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.52
Consensus pattern (22 bp):
TATATATTTCGAATATTTCATG
Found at i:58072510 original size:29 final size:28
Alignment explanation
Indices: 58072477--58072541 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
58072467 ATCTTATAAT
* *
58072477 TTGATTATTTTAATACTACAAGGGCTAAA
1 TTGATTA-TTTAATAATACAAGGACTAAA
* *
58072506 TTGATCTATTTAATAATAGAAGGACTAAT
1 TTGAT-TATTTAATAATACAAGGACTAAA
58072535 TTGATTA
1 TTGATTA
58072542 GATACCAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 2 0.06
29 27 0.87
30 2 0.06
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (28 bp):
TTGATTATTTAATAATACAAGGACTAAA
Found at i:58074674 original size:2 final size:2
Alignment explanation
Indices: 58074661--58074705 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
58074651 TCAATTCTTT
* * * *
58074661 TA TA TA TG TA TA TA TA TA CA TA TA TA CA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58074703 TA T
1 TA T
58074706 TATTTTTCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:58076347 original size:10 final size:10
Alignment explanation
Indices: 58076332--58076356 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
58076322 ATTTTTATTG
58076332 AATTAAATAT
1 AATTAAATAT
58076342 AATTAAATAT
1 AATTAAATAT
58076352 AATTA
1 AATTA
58076357 GTTAACATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTAAATAT
Found at i:58077867 original size:12 final size:12
Alignment explanation
Indices: 58077850--58077892 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
58077840 CTCTTAAACC
58077850 TATTTAAATTAA
1 TATTTAAATTAA
58077862 TATTTATAATTAA
1 TATTTA-AATTAA
*
58077875 -ATTTTAAATAAA
1 TA-TTTAAATTAA
58077887 TATTTA
1 TATTTA
58077893 TTAATTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 16 0.59
13 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TATTTAAATTAA
Found at i:58079296 original size:17 final size:17
Alignment explanation
Indices: 58079274--58079307 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
58079264 CTTACCTTCA
58079274 TTTTTTTTATTTTTTAT
1 TTTTTTTTATTTTTTAT
58079291 TTTTTTTTATTTTTTAT
1 TTTTTTTTATTTTTTAT
58079308 AAATGAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTTATTTTTTAT
Found at i:58089777 original size:21 final size:21
Alignment explanation
Indices: 58089753--58089808 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 21
58089743 TTAAATAATA
58089753 ATTAAAATTTATTAAGTATAT
1 ATTAAAATTTATTAAGTATAT
* *
58089774 ATT-AAGTAT-TTAAGTATAT
1 ATTAAAATTTATTAAGTATAT
58089793 ATATCAAAATTATATT
1 AT-T-AAAATT-TATT
58089809 TATCTTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
19 12 0.46
20 5 0.19
21 3 0.12
22 3 0.12
23 1 0.04
24 2 0.08
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (21 bp):
ATTAAAATTTATTAAGTATAT
Found at i:58103028 original size:14 final size:16
Alignment explanation
Indices: 58103005--58103043 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
58102995 ATAAGAAAAT
58103005 TATT-TAAATTT-TAA
1 TATTATAAATTTATAA
58103019 T-TTATAAATTTATAA
1 TATTATAAATTTATAA
58103034 TATTA-AAATT
1 TATTATAAATT
58103044 ATTTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 8 0.36
15 9 0.41
16 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATAAATTTATAA
Found at i:58103153 original size:21 final size:18
Alignment explanation
Indices: 58103129--58103176 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
58103119 GTTTAGTGAC
*
58103129 TTAAATTATTTTATTAAATAA
1 TTAAATAATTTT-TT-AA-AA
58103150 TT-AATAATTTTTTAAAA
1 TTAAATAATTTTTTAAAA
58103167 TTAAATAATT
1 TTAAATAATT
58103177 AAAATATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 4 0.16
18 9 0.36
19 2 0.08
20 8 0.32
21 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTAAATAATTTTTTAAAA
Found at i:58106393 original size:6 final size:6
Alignment explanation
Indices: 58106382--58106407 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
58106372 ACACCGTAGG
58106382 GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GT
58106408 CATAATCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:58107339 original size:8 final size:8
Alignment explanation
Indices: 58107328--58107365 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
58107318 ATTATTTCTT
58107328 TTATTATA
1 TTATTATA
58107336 TTATTA-A
1 TTATTATA
*
58107343 GTATTATA
1 TTATTATA
58107351 TTATTATAA
1 TTATTAT-A
58107360 TTATTA
1 TTATTA
58107366 ATTTCTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 13 0.50
9 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (8 bp):
TTATTATA
Found at i:58107339 original size:20 final size:19
Alignment explanation
Indices: 58107303--58107341 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
58107293 TTTCTTTTTT
* *
58107303 TTTCTTTATTCTTTTATTA
1 TTTCTTTATTATATTATTA
58107322 TTTCTTTTATTATATTATTA
1 TTTC-TTTATTATATTATTA
58107342 AGTATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTCTTTATTATATTATTA
Found at i:58111052 original size:27 final size:27
Alignment explanation
Indices: 58111022--58111094 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
58111012 ATGAAATGCT
*
58111022 CCGAAGAGCCACTATCACTAAGTTGCA
1 CCGAAGTGCCACTATCACTAAGTTGCA
* * *
58111049 CCGAAGTGCCTCTATCACTGATTTGCA
1 CCGAAGTGCCACTATCACTAAGTTGCA
* *
58111076 CCAAAGTGCCACAATCACT
1 CCGAAGTGCCACTATCACT
58111095 TTATGCGTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (27 bp):
CCGAAGTGCCACTATCACTAAGTTGCA
Found at i:58112616 original size:15 final size:15
Alignment explanation
Indices: 58112579--58112622 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
58112569 ATACTAACAT
*
58112579 TATATAATTAAAATA
1 TATATTATTAAAATA
* *
58112594 TTTA-TATTATAATA
1 TATATTATTAAAATA
58112608 TATATTATTAAAATA
1 TATATTATTAAAATA
58112623 ATAATTAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATTATTAAAATA
Found at i:58112626 original size:21 final size:20
Alignment explanation
Indices: 58112602--58112646 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 20
58112592 TATTTATATT
58112602 ATAATATATATT-ATTAAAATA
1 ATAATATA-ATTAATT-AAATA
58112623 ATAAT-TAATTAATTAAATA
1 ATAATATAATTAATTAAATA
58112642 A-AATA
1 ATAATA
58112647 AAATATCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 3 0.14
19 9 0.41
20 5 0.23
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATATAATTAATTAAATA
Found at i:58112629 original size:12 final size:13
Alignment explanation
Indices: 58112579--58112630 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
58112569 ATACTAACAT
58112579 TATATAATTAAAA
1 TATATAATTAAAA
*
58112592 TATTTATATTATAATA
1 TATATA-ATTA-AA-A
*
58112608 TATATTATTAAAA
1 TATATAATTAAAA
58112621 TA-ATAATTAA
1 TATATAATTAA
58112631 TTAATTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
12 7 0.22
13 8 0.25
14 6 0.19
15 6 0.19
16 5 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATAATTAAAA
Found at i:58112883 original size:29 final size:29
Alignment explanation
Indices: 58112838--58112899 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
58112828 TCCTTTCCAC
**
58112838 CTTTGATTATTTCCACTTTAGTCCTTCAA
1 CTTTGATTATTTCCACTTTAACCCTTCAA
*
58112867 CTTTG-TTAATTTTCACTTTAACCCTTCAA
1 CTTTGATT-ATTTCCACTTTAACCCTTCAA
58112896 CTTT
1 CTTT
58112900 TGAATATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.21, C:0.24, G:0.05, T:0.50
Consensus pattern (29 bp):
CTTTGATTATTTCCACTTTAACCCTTCAA
Found at i:58113863 original size:17 final size:17
Alignment explanation
Indices: 58113833--58113873 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
58113823 AAAATAATTA
58113833 AATAAATAATTTAAAAT
1 AATAAATAATTTAAAAT
*
58113850 TATAAA-AATATTAAAAT
1 AATAAATAAT-TTAAAAT
58113867 AATAAAT
1 AATAAAT
58113874 TAGTTCAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAAATAATTTAAAAT
Found at i:58114363 original size:19 final size:18
Alignment explanation
Indices: 58114330--58114368 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
58114320 GTTTAAATTT
58114330 TAAATTTAAATAACTCAAA
1 TAAATTTAAATAACT-AAA
58114349 TAAA-TTAAATAAACTAAA
1 TAAATTTAAAT-AACTAAA
58114367 TA
1 TA
58114369 TAAAAACTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATTTAAATAACTAAA
Found at i:58114521 original size:18 final size:18
Alignment explanation
Indices: 58114484--58114527 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
58114474 CTTTCCCTTC
*
58114484 AAAATTTTTTATCCCC-A
1 AAAATTTTTGATCCCCAA
*
58114501 AAAATTTTTGCTCCCCTAA
1 AAAATTTTTGATCCCC-AA
58114520 AAAATTTT
1 AAAATTTT
58114528 ACTTTCTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 14 0.61
19 9 0.39
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.41
Consensus pattern (18 bp):
AAAATTTTTGATCCCCAA
Found at i:58115573 original size:4 final size:4
Alignment explanation
Indices: 58115564--58115609 Score: 56
Period size: 4 Copynumber: 11.2 Consensus size: 4
58115554 TAAATTACCT
* * *
58115564 TTTC TTTC TTTC GTTC TTTC TTTC TTTC TTTTC TTTT TTTT TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTTC T
58115610 GTTTGTTTCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:58116517 original size:104 final size:104
Alignment explanation
Indices: 58116298--58116526 Score: 280
Period size: 104 Copynumber: 2.2 Consensus size: 104
58116288 AATCTTTGCC
* * *
58116298 CTAGATACGAAAATTCAGGATCCTAGAGACAAATGTTTTAGGGAAAACAAAGAGTGTGTGTAATA
1 CTAGATACGAAAA-TCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTGTATAATA
58116363 TAGGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
65 TAGGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
* * * * * * * * *
58116403 CAAAAAACGAAAAGCAGGGTCCTGGTGATAAATATTTTAGGGAAAACGAAGAGTTTGTATAATAT
1 CTAGATACGAAAATCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTGTATAATAT
* ** * *
58116468 AGGTTACAATCATTTGAATGTTGATCGATGTTCAAAGCTT
66 AGGTTACAAACATTTGAACATTGATCGATGGTC-AAGATT
58116508 -TAGATACGAAAATCAGGGT
1 CTAGATACGAAAATCAGGGT
58116527 TTGAGCAACA
Statistics
Matches: 102, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
104 87 0.85
105 15 0.15
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (104 bp):
CTAGATACGAAAATCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTGTATAATAT
AGGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
Found at i:58124617 original size:16 final size:15
Alignment explanation
Indices: 58124591--58124625 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
58124581 TGATGTGAAT
58124591 AATATAAAATATTAA
1 AATATAAAATATTAA
*
58124606 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
58124622 AATA
1 AATA
58124626 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:58124797 original size:20 final size:20
Alignment explanation
Indices: 58124740--58124799 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
58124730 AATACTACAT
58124740 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
58124759 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
58124782 AAATATGTACATAATATA
1 AAATATGTACATAATATA
58124800 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:58124860 original size:26 final size:24
Alignment explanation
Indices: 58124806--58124893 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 24
58124796 TATAGTGTAA
* *
58124806 AAAATACATACATAATAT-A-ATT
1 AAAATATATACATAAGATAACATT
58124828 AAAATATATACATAAGATAACATGT
1 AAAATATATACATAAGATAACAT-T
* * **
58124853 AAATATATATAAATAATATAGTATT
1 AAA-ATATATACATAAGATAACATT
58124878 AAAGATATATACATAA
1 AAA-ATATATACATAA
58124894 AATAGTATAA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
22 16 0.30
23 1 0.02
24 2 0.04
25 19 0.35
26 16 0.30
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.32
Consensus pattern (24 bp):
AAAATATATACATAAGATAACATT
Found at i:58124886 original size:25 final size:25
Alignment explanation
Indices: 58124776--58124986 Score: 140
Period size: 23 Copynumber: 8.9 Consensus size: 25
58124766 TACGTGATAA
* *
58124776 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * * *
58124801 TGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* *
58124825 -ATTAAA-ATATATACATAAGATAA
1 TATTAAAGATATATACATAATATAG
* * *
58124848 CATGTAAATATATATAAATAATATAG
1 TAT-TAAAGATATATACATAATATAG
*
58124874 TATTAAAGATATATACATAAAATAG
1 TATTAAAGATATATACATAATATAG
* *
58124899 TA-T-AATATATATACGTAATATAG
1 TATTAAAGATATATACATAATATAG
* * *
58124922 AATT-TAGA-ATATACCTAATATA-
1 TATTAAAGATATATACATAATATAG
* * *
58124944 T-TAAAAGA-ATATATATAATATAA
1 TATTAAAGATATATACATAATATAG
*
58124967 TATT-AAGAAATATA-ATAATA
1 TATTAAAGATATATACATAATA
58124987 ACAAAAAAAG
Statistics
Matches: 149, Mismatches: 28, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
21 1 0.01
22 29 0.19
23 46 0.31
24 12 0.08
25 45 0.30
26 16 0.11
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Found at i:58124906 original size:48 final size:49
Alignment explanation
Indices: 58124776--58124984 Score: 152
Period size: 48 Copynumber: 4.4 Consensus size: 49
58124766 TACGTGATAA
* * * * *
58124776 TATTAAAAATATGTACATAATATAGTGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAAAATA-TGTAAAATATATATACATAATATAG
* *
58124825 -ATTAAA-ATATATACATAAGATAACATGT-AAATATATATAAATAATATAG
1 TATTAAAGATATATACAT-A-A-AATATGTAAAATATATATACATAATATAG
* *
58124874 TATTAAAGATATATACATAAAATA-GTATAATATATATACGTAATATAG
1 TATTAAAGATATATACATAAAATATGTAAAATATATATACATAATATAG
* * * * * * *
58124922 AATT-TAGA-ATATACCTAATATAT-TAAAAGA-ATATATATAATATAA
1 TATTAAAGATATATACATAAAATATGTAAAATATATATACATAATATAG
*
58124967 TATT-AAGAAATATA-ATAA
1 TATTAAAGATATATACATAA
58124985 TAACAAAAAA
Statistics
Matches: 129, Mismatches: 22, Indels: 22
0.75 0.13 0.13
Matches are distributed among these distances:
45 21 0.16
46 22 0.17
47 14 0.11
48 48 0.37
49 5 0.04
50 9 0.07
51 10 0.08
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (49 bp):
TATTAAAGATATATACATAAAATATGTAAAATATATATACATAATATAG
Found at i:58124984 original size:23 final size:25
Alignment explanation
Indices: 58124941--58124986 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
58124931 TATACCTAAT
58124941 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
58124966 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
58124987 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:58125505 original size:30 final size:30
Alignment explanation
Indices: 58125464--58125562 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
58125454 TAGGTACAAG
58125464 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
58125494 AGGTAGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
58125524 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
58125554 TGGTGGTGG
1 TGGTGGTGG
58125563 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:58126390 original size:87 final size:87
Alignment explanation
Indices: 58126189--58126413 Score: 249
Period size: 87 Copynumber: 2.6 Consensus size: 87
58126179 TGATTCTTTA
* * * *
58126189 CTCGGCATGTGATCCCGA-GCTCAACTCATTTCTCGTAATATGAATTGAATCTTTAAAACTAGAC
1 CTCGGTATGTGA-CCCGAGGCTCAACTCATTTCTCGTAATATGAGTTG-ATTTTTAAAACTAGAA
* *
58126253 ATTAAAAATAGAAATTGAAAATAG
64 ATTAAAAACAGAAATTGAAAATAC
* * * * * *
58126277 CTCAGTACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAC-A-AAAT
1 CTCGGTATGTGACCCGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTAAAACTAGAAA-
* **
58126340 TTGTAAAACAGATTTTGAAAATAC
65 TT-AAAAACAGAAATTGAAAATAC
*
58126364 CTCGGTATGTGACCCGAGGCTCAACTCATTTATCGTAATATGAGTTGATT
1 CTCGGTATGTGACCCGAGGCTCAACTCATTTCTCGTAATATGAGTTGATT
58126414 CTTGAAAAGC
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
85 2 0.02
86 3 0.03
87 72 0.64
88 35 0.31
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (87 bp):
CTCGGTATGTGACCCGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTAAAACTAGAAAT
TAAAAACAGAAATTGAAAATAC
Found at i:58126691 original size:78 final size:74
Alignment explanation
Indices: 58126339--58126969 Score: 587
Period size: 71 Copynumber: 8.3 Consensus size: 74
58126329 TAAAACAAAA
* ** * * * ** * *
58126339 TTTGTAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCATTTATCGTAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAG--CGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
58126404 TGAGTTGA-TT
64 TGAGTTGATTT
* * * *
58126414 CTTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
58126479 AGTTGATTT
66 AGTTGATTT
** * * *
58126488 TTTGATGAACAGAAATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACAT
1 TTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
58126552 AAGTTGATTTT
65 GAGTTGA-TTT
* *
58126563 TTTGAAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATA
58126628 TGAGTTGATTTT
64 TGAGTTGA-TTT
* * *
58126640 TTTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTG-AAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAAT
58126705 ATGAGTTGATTT
63 ATGAGTTGATTT
* * *
58126717 TTTGAAAAACAGAAATTCAAAACACCTCAGCATGT---GAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
58126779 AGTTGA-TT
66 AGTTGATTT
* * ** *
58126787 TTTGAAAAACATAAATTAAGCAGAAATTGAAAATACCTCAACGGGTCTTGAAGCTCAACTCACCT
1 TTTG--------AAA--AA-CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCT
*
58126852 CTCACAATATGAGTTGATTT
55 CTCGCAATATGAGTTGATTT
** * ** * ** * *
58126872 TTTG---ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTTAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
58126934 AGTTGATTT
66 AGTTGATTT
58126943 TTTGAATTAAAACAGAAATTGAAAATA
1 TTTG-A--AAAACAGAAATTGAAAATA
58126970 GAAATGGAAA
Statistics
Matches: 466, Mismatches: 62, Indels: 54
0.80 0.11 0.09
Matches are distributed among these distances:
70 6 0.01
71 92 0.20
72 1 0.00
73 39 0.08
74 58 0.12
75 51 0.11
76 19 0.04
77 86 0.18
78 54 0.12
80 2 0.00
81 21 0.05
84 31 0.07
85 6 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (74 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTT
Done.